Psyllid ID: psy13945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEEcccccEEEEEccccccEEEEccccccEEEEEEccccEEEEccccccEEEEEccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEccccEEEEEEcccccEEEccccccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccccc
Coil and Loop (DISEMBL)
lirciavsssgswiaiGQASGVLTLLDlrtgtslaswkghegEILQLvtaddgtlisSSLDQTISAwhtndgslkcniqgptepvh
Flexible Loop (DISEMBL)
LIRCIAvsssgswiaiGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWhtndgslkcniqgptepvh
Low Complexity Region (SEG)
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH
Disordered region (IsUnstruct)
**RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDG*L************
Disordered Region (DISOPRED)
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG******
Disordered Region (DISEMBL)
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNI********
Disordered Region (DISPRO)
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q562E7	1941	WD repeat-containing prot	yes	N/A	1.0	0.044	0.360	1e-11
Q5ND34	1934	WD repeat-containing prot	yes	N/A	1.0	0.044	0.383	2e-11
D4A929	1933	WD repeat-containing prot	yes	N/A	1.0	0.044	0.360	5e-11
P74598	348	Uncharacterized WD repeat	N/A	N/A	0.767	0.189	0.358	7e-06
Q55FJ0	2179	Probable inactive serine/	no	N/A	0.767	0.030	0.313	1e-05
Q8YV57	1683	Uncharacterized WD repeat	yes	N/A	0.976	0.049	0.317	2e-05
P36037	715	Protein DOA1 OS=Saccharom	yes	N/A	0.930	0.111	0.308	3e-05
P49695	742	Probable serine/threonine	yes	N/A	0.918	0.106	0.35	7e-05
Q6TEN6	724	WD repeat-containing prot	no	N/A	0.860	0.102	0.293	0.0002
Q5ZLL7	751	WD repeat-containing prot	no	N/A	0.860	0.098	0.293	0.0003

>sp|Q562E7|WDR81_HUMAN WD repeat-containing protein 81 OS=Homo sapiens GN=WDR81 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            L+R +A+S SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   L+SSS 
Sbjct: 1788 LVRALAISPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSS 1847

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D +++ W   +     + +  ++P+H
Sbjct: 1848 DHSLTVWKELEQKPTHHYKSASDPIH 1873

Homo sapiens (taxid: 9606)

>sp|Q5ND34|WDR81_MOUSE WD repeat-containing protein 81 OS=Mus musculus GN=Wdr81 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   LISSS 
Sbjct: 1781 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLISSSS 1840

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D +++ W   +     + +  ++P+H
Sbjct: 1841 DHSLTVWKELEQKPTHHYKSASDPIH 1866

Mus musculus (taxid: 10090)

>sp|D4A929|WDR81_RAT WD repeat-containing protein 81 OS=Rattus norvegicus GN=Wdr81 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   ++SSS 
Sbjct: 1780 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVIVSSSS 1839

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D +++ W   +     + +  ++P+H
Sbjct: 1840 DHSLTVWKELEQKPTHHYKSASDPIH 1865

Rattus norvegicus (taxid: 10116)

>sp|P74598|Y1491_SYNY3 Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1491 PE=4 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
           I  IAVS +  W+A     G + + DL  G  + + +GH+G +L L  + DG TL S + 
Sbjct: 275 INTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLRGHQGWVLSLAFSPDGNTLYSGAE 334

Query: 61  DQTISAW 67
           D+T+  W
Sbjct: 335 DKTVKIW 341

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q55FJ0|LVSG_DICDI Probable inactive serine/threonine-protein kinase lvsG OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 20/86 (23%)

Query: 2    IRCIAVSS--------------------SGSWIAIGQASGVLTLLDLRTGTSLASWKGHE 41
            IRCIA S+                    + +W+A G +SG++TLLD RTGT L  WK H 
Sbjct: 1994 IRCIATSNDHLIGSNSNQFSSSSFIASATPTWVATGSSSGMITLLDTRTGTILEQWKSHH 2053

Query: 42   GEILQLVTADDGTLISSSLDQTISAW 67
               +  + A     + S  D+++  W
Sbjct: 2054 DSPVNKLIAQGSRYLISCGDKSVIQW 2079

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 2    IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
            I  I+ +  G  IA   A   + +  +R G +L +  GH+ E+ ++  + DG TL S+S 
Sbjct: 1407 IYGISFTPQGDLIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASR 1466

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPV 85
            D T+  W+ +DG  K  ++G T+ V
Sbjct: 1467 DNTVKLWNVSDGKFKKTLKGHTDEV 1491

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P36037|DOA1_YEAST Protein DOA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DOA1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1   LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
           ++R +AV   G +I+     G++ L+D+ TG  L +++GHE  +  +    +G ++S   
Sbjct: 181 VVRHLAVVDDGHFISCSN-DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE 239

Query: 61  DQTISAWHTNDGSLKCNIQGP 81
           D+T+  W   +GSLK  I  P
Sbjct: 240 DRTVRIWSKENGSLKQVITLP 260

Participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. May act by preventing the interaction between CDC48 and the E4 enzyme UFD2, leading to prevent multiubiquitination of substrates and subsequent degradation. Essential for maintaining cellular ubiquitin levels.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 5   IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SLDQT 63
           IA S  GS +A G   G   L ++ TGT  A  KGH   +  +  + DG++++S S D T
Sbjct: 549 IAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGT 608

Query: 64  ISAWHTNDGSLKCNIQGPTE 83
           I  W    G  +  +Q P E
Sbjct: 609 IRLWDVATGKERDVLQAPAE 628

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6TEN6|WDR91_DANRE WD repeat-containing protein 91 OS=Danio rerio GN=wdr91 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
           I C A + +G+ +  G A G++ L D++   S  SWK H+GE+  +  + D+ T+ S   
Sbjct: 542 INCTAFNHNGNLLVTGAADGIIRLFDMQRYESALSWKAHDGEVYSVEFSYDENTVFSIGE 601

Query: 61  DQTISAWHTNDGSLK 75
           D     W+ +   +K
Sbjct: 602 DGKFVQWNIHRCGVK 616

Danio rerio (taxid: 7955)

>sp|Q5ZLL7|WDR91_CHICK WD repeat-containing protein 91 OS=Gallus gallus GN=WDR91 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
           I C A + +G+ +  G A G++ L D++      SWK H+GE+  +  + D+ T+ S   
Sbjct: 569 INCTAFNHNGNLLVTGAADGIVRLFDMQQHECAMSWKAHDGEVYSVEFSYDENTVYSIGE 628

Query: 61  DQTISAWHTNDGSLK 75
           D     W+ +   LK
Sbjct: 629 DGKFIQWNIHKSGLK 643

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
242017341	1892	conserved hypothetical protein [Pediculu	1.0	0.045	0.627	2e-26
189240288	1900	PREDICTED: similar to CG6734 CG6734-PA [	1.0	0.045	0.604	4e-26
270012356	1938	hypothetical protein TcasGA2_TC006498 [T	1.0	0.044	0.604	5e-26
328783581	1938	PREDICTED: hypothetical protein LOC10057	1.0	0.044	0.651	1e-25
350423796	1941	PREDICTED: hypothetical protein LOC10074	1.0	0.044	0.651	2e-25
383862113	1937	PREDICTED: uncharacterized protein LOC10	1.0	0.044	0.639	3e-25
345493502	1617	PREDICTED: hypothetical protein LOC10011	1.0	0.053	0.627	5e-25
332030767	1955	WD repeat-containing protein 81 [Acromyr	1.0	0.043	0.639	6e-25
307184438	1961	WD repeat-containing protein 81 [Campono	1.0	0.043	0.639	9e-25
307201885	1961	WD repeat-containing protein 81 [Harpegn	1.0	0.043	0.639	1e-24

>gi|242017341|ref|XP_002429148.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514021|gb|EEB16410.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIR + VS  G WIA+GQASG+LT+LD+RTG  L+SWKGHE E+LQL T +D  L+SSSL
Sbjct: 1738 LIRSVCVSPDGYWIAVGQASGLLTVLDVRTGMVLSSWKGHEAEVLQLATVNDNILMSSSL 1797

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQT+SAW+ +DG  K  ++GP EPVH
Sbjct: 1798 DQTVSAWNASDGKFKFFMKGPAEPVH 1823

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240288|ref|XP_973124.2| PREDICTED: similar to CG6734 CG6734-PA [Tribolium castaneum]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRC+AV+ SG+W+A GQ+SG +T+LD RTG  +++WK HE E+LQLV AD+ TLISSSL
Sbjct: 1746 LIRCLAVAPSGAWVATGQSSGTITVLDTRTGLVISTWKAHESEVLQLVAADNSTLISSSL 1805

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI  W+ +DG  K +++G TEPVH
Sbjct: 1806 DQTIGVWNASDGKFKFHLRGATEPVH 1831

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012356|gb|EFA08804.1| hypothetical protein TcasGA2_TC006498 [Tribolium castaneum]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRC+AV+ SG+W+A GQ+SG +T+LD RTG  +++WK HE E+LQLV AD+ TLISSSL
Sbjct: 1784 LIRCLAVAPSGAWVATGQSSGTITVLDTRTGLVISTWKAHESEVLQLVAADNSTLISSSL 1843

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI  W+ +DG  K +++G TEPVH
Sbjct: 1844 DQTIGVWNASDGKFKFHLRGATEPVH 1869

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783581|ref|XP_003250313.1| PREDICTED: hypothetical protein LOC100576958 [Apis mellifera]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAV+ SG W+A+GQASG LT+LD+RTG  +ASWKGHE EILQL   ++ TLISSSL
Sbjct: 1784 LIRCIAVAPSGYWVALGQASGFLTILDIRTGLIIASWKGHECEILQLEAVNETTLISSSL 1843

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D+TI+ W   DG LK +++G TEPVH
Sbjct: 1844 DETIAVWSALDGKLKFHMKGSTEPVH 1869

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423796|ref|XP_003493594.1| PREDICTED: hypothetical protein LOC100748268 [Bombus impatiens]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAV+ SG W+A+GQASG LT+LD+RTG  +ASWKGHE EILQL   ++ TLISSSL
Sbjct: 1787 LIRCIAVAPSGYWVALGQASGFLTILDIRTGLIIASWKGHECEILQLEAINETTLISSSL 1846

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D+TI+ W   DG LK +++G TEPVH
Sbjct: 1847 DETIAVWSALDGKLKFHMKGSTEPVH 1872

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862113|ref|XP_003706528.1| PREDICTED: uncharacterized protein LOC100878009 [Megachile rotundata]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAV+ SG W+A+GQASG LT+LD+RTG  +ASWKGHE EILQL   ++ T+ISSSL
Sbjct: 1783 LIRCIAVAPSGYWVALGQASGFLTILDIRTGLIIASWKGHECEILQLEAINETTIISSSL 1842

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            D+TI+ W   DG LK +++G TEPVH
Sbjct: 1843 DETIAVWSALDGKLKFHMKGSTEPVH 1868

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493502|ref|XP_001601532.2| PREDICTED: hypothetical protein LOC100117231 [Nasonia vitripennis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            L+RCIAV+ SG W+A+GQASG LT+LD+RTG  +ASWKGHE EILQL   ++ T+ISSSL
Sbjct: 1463 LVRCIAVAPSGHWVALGQASGFLTILDIRTGLIIASWKGHECEILQLEALNETTIISSSL 1522

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI+ W   DG LK  ++G TEP+H
Sbjct: 1523 DQTIAVWSAVDGKLKFYLKGVTEPIH 1548

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030767|gb|EGI70443.1| WD repeat-containing protein 81 [Acromyrmex echinatior]

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAVS S +W+A+GQASG LT+LD RTG  +ASWKGHE EILQL   ++ T++SSSL
Sbjct: 1801 LIRCIAVSPSTNWVALGQASGFLTILDTRTGLIIASWKGHECEILQLEAINETTIVSSSL 1860

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI+ W   DG LK +++G TEPVH
Sbjct: 1861 DQTIAVWSAIDGKLKFHMKGATEPVH 1886

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184438|gb|EFN70847.1| WD repeat-containing protein 81 [Camponotus floridanus]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAV+ SG+W+A+GQASG LT+LD RTG  +ASWKGHE EILQL   ++ T++SSSL
Sbjct: 1807 LIRCIAVAPSGNWVALGQASGFLTILDTRTGLIIASWKGHECEILQLEAINETTIVSSSL 1866

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI+ W   DG LK +++G TEPVH
Sbjct: 1867 DQTIAVWSAIDGKLKFHMKGATEPVH 1892

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201885|gb|EFN81514.1| WD repeat-containing protein 81 [Harpegnathos saltator]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1    LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
            LIRCIAV+ SG W+A+GQASG LT+LD RTG  +ASWKGHE EILQL   ++ T++SSSL
Sbjct: 1807 LIRCIAVAPSGYWVALGQASGFLTILDTRTGLIIASWKGHECEILQLEAINETTIVSSSL 1866

Query: 61   DQTISAWHTNDGSLKCNIQGPTEPVH 86
            DQTI+ W   DG LK +++G TEPVH
Sbjct: 1867 DQTIAVWSAVDGKLKFHMKGATEPVH 1892

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
FB|FBgn0032395	1953	CG6734 [Drosophila melanogaste	0.988	0.043	0.423	7e-15
UNIPROTKB|F1N971	370	WDR81 "Uncharacterized protein	1.0	0.232	0.406	3e-13
UNIPROTKB|A7Z049	894	WDR81 "Uncharacterized protein	1.0	0.096	0.372	3e-11
MGI|MGI:2681828	1934	Wdr81 "WD repeat domain 81" [M	1.0	0.044	0.383	4.7e-11
UNIPROTKB|E2R4W6	1933	WDR81 "Uncharacterized protein	1.0	0.044	0.372	5.9e-11
UNIPROTKB|Q562E7	1941	WDR81 "WD repeat-containing pr	1.0	0.044	0.360	6e-11
RGD|1311334	1933	Wdr81 "WD repeat domain 81" [R	1.0	0.044	0.360	9.7e-11
TAIR|locus:1006230455	1639	AT5G18525 [Arabidopsis thalian	0.697	0.036	0.45	6e-08
UNIPROTKB|P74598	348	sll1491 "Uncharacterized WD re	0.767	0.189	0.358	2.2e-07
UNIPROTKB|D6RFX4	194	GNB2L1 "Guanine nucleotide-bin	0.860	0.381	0.342	4.1e-07

FB|FBgn0032395 CG6734 [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:     2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLD 61
             +RC+AV+ SG+W+A G +SG +  LD RTG  + SW+  E ++LQL    D  L+SS+LD
Sbjct:  1799 VRCLAVAPSGNWLAAGLSSGCIVQLDTRTGMVINSWRPMECDLLQLAAPSDQFLVSSALD 1858

Query:    62 QTISAWHTNDGSLKCNIQGPTEPVH 86
              +++ WH  DG +   ++ P EP H
Sbjct:  1859 HSLAVWHALDGIMHYQLKPPPEPAH 1883

GO:0016230 "sphingomyelin phosphodiesterase activator activity" evidence=ISS

UNIPROTKB|F1N971 WDR81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 35/86 (40%), Positives = 52/86 (60%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             LIRC+AVS +G  +  G +SG + LLD RTG  +  W  HEG+ILQ+  A+   LISSS 
Sbjct:   215 LIRCLAVSPNGRSVMAGFSSGFIVLLDTRTGLIMRGWPAHEGDILQIKAAEGNVLISSSS 274

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  +EP+H
Sbjct:   275 DHSMTVWKELEQKPLHHYKSASEPIH 300

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

UNIPROTKB|A7Z049 WDR81 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   L+SSS 
Sbjct:   741 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSILVSSSS 800

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  ++P+H
Sbjct:   801 DHSLTVWKELEPKPTHHYKSASDPIH 826

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

MGI|MGI:2681828 Wdr81 "WD repeat domain 81" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 33/86 (38%), Positives = 50/86 (58%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   LISSS 
Sbjct:  1781 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLISSSS 1840

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  ++P+H
Sbjct:  1841 DHSLTVWKELEQKPTHHYKSASDPIH 1866

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|E2R4W6 WDR81 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   L+SSS 
Sbjct:  1780 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSS 1839

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  ++P+H
Sbjct:  1840 DHSLTVWKELEQKPMHHYKSASDPIH 1865

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q562E7 WDR81 "WD repeat-containing protein 81" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             L+R +A+S SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   L+SSS 
Sbjct:  1788 LVRALAISPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLVSSSS 1847

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  ++P+H
Sbjct:  1848 DHSLTVWKELEQKPTHHYKSASDPIH 1873

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

RGD|1311334 Wdr81 "WD repeat domain 81" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 31/86 (36%), Positives = 50/86 (58%)

Query:     1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
             L+R +AVS SG  +  G +SG + LLD RTG  L  W  HEG+ILQ+   +   ++SSS 
Sbjct:  1780 LVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVIVSSSS 1839

Query:    61 DQTISAWHTNDGSLKCNIQGPTEPVH 86
             D +++ W   +     + +  ++P+H
Sbjct:  1840 DHSLTVWKELEQKPTHHYKSASDPIH 1865

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA;ISO

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:1006230455 AT5G18525 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query:     8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAW 67
             S S SWIA G +SG   L DLR    ++SW+ H+G + +LV  +   L+SSSLD+T+  W
Sbjct:  1480 SVSPSWIAAGFSSGQCRLFDLRENGFISSWRAHDGYVTKLVAPESHLLVSSSLDKTLRIW 1539

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB|P74598 sll1491 "Uncharacterized WD repeat-containing protein sll1491" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query:     2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
             I  IAVS +  W+A     G + + DL  G  + + +GH+G +L L  + DG TL S + 
Sbjct:   275 INTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLRGHQGWVLSLAFSPDGNTLYSGAE 334

Query:    61 DQTISAW 67
             D+T+  W
Sbjct:   335 DKTVKIW 341

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

UNIPROTKB|D6RFX4 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query:     5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT 63
             + +SS G +   G   G L L DL TGT+   + GH  ++L +  ++D+  ++S S D+T
Sbjct:    28 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 87

Query:    64 ISAWHTNDGSLKCNIQ 79
             I  W+T  G  K  +Q
Sbjct:    88 IKLWNTL-GVCKYTVQ 102

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0090003 "regulation of establishment of protein localization to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	86
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 6e-09
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSSL 60
           +  +A S  G  +    + G + L DL TG  L + +GHE  +  +  + DG L+ S S 
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239

Query: 61  DQTISAWHTNDGSLKCNIQGPTEPVH 86
           D TI  W    G     + G T  V 
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHTNSVT 265

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 2  IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVT-ADDGTLISSSL 60
          + C+A S  G  +A G   G + + DL TG  L + KGH G +  +   AD   L S S 
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
          D+TI  W    G     + G T  V
Sbjct: 72 DKTIRLWDLETGECVRTLTGHTSYV 96

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSSL 60
           +R +A S+ G+++A G +   + L DL TG  + +  GH   +  +  + DG ++ SSS 
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 61  DQTISAWHTNDGSLKCNIQGPTEPV 85
           D+TI  W    G     ++G T+ V
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWV 138

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSSL 60
           +  +A S  G  ++       + + D+ TG  L + +GH   +  +  + DGT + SSS 
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155

Query: 61  DQTISAWHTNDGSLKCNIQGPTEPVH 86
           D TI  W    G     + G T  V+
Sbjct: 156 DGTIKLWDLRTGKCVATLTGHTGEVN 181

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
           +  +A S  G+++A     G + L DLRTG  +A+  GH GE+  +  + DG  L+SSS 
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 61  DQTISAWHTNDGSLKCNIQGPTEPVH 86
           D TI  W  + G     ++G    V+
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVN 223

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
           +  +A S  G  +A G   G + + DLRTG  + +  GH   +  L  + DG  L S S 
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281

Query: 61  DQTISAW 67
           D TI  W
Sbjct: 282 DGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 2   IRCIAVSSSGSWIAIGQAS-GVLTLLDLRTGTSLAS-WKGHEGEILQLVTADDGTLISSS 59
           +  +A S  G  +    +S G + L DL TG  L S   GH   ++   + D   L S S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 60  LDQTISAWHT-NDGSLKCNIQGPTEPV 85
            D TI  W   +  SL   + G +  V
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSV 287

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG0271|consensus	480		99.86
KOG0263|consensus	707		99.85
KOG0266|consensus	456		99.84
KOG0272|consensus	459		99.83
KOG0271|consensus	480		99.81
KOG0319|consensus	775		99.8
KOG0266|consensus	456		99.79
KOG0272|consensus	459		99.78
KOG0279|consensus	315		99.78
KOG0284|consensus	464		99.77
PTZ00421	493	coronin; Provisional	99.77
KOG0316|consensus	307		99.76
PTZ00421	493	coronin; Provisional	99.76
KOG0292|consensus	1202		99.76
KOG0286|consensus	343		99.75
KOG0295|consensus	406		99.75
KOG0319|consensus	775		99.74
KOG0265|consensus	338		99.73
KOG0279|consensus	315		99.73
KOG0285|consensus	460		99.73
KOG0291|consensus	893		99.73
KOG0263|consensus	707		99.73
KOG0285|consensus	460		99.72
KOG0276|consensus	794		99.72
KOG0318|consensus	603		99.72
KOG0275|consensus	508		99.71
KOG0308|consensus	735		99.71
PTZ00420	568	coronin; Provisional	99.7
KOG0315|consensus	311		99.67
KOG0292|consensus	1202		99.66
KOG0289|consensus	506		99.66
KOG0273|consensus	524		99.65
KOG0275|consensus	508		99.65
KOG0291|consensus	893		99.64
KOG0643|consensus	327		99.64
KOG0265|consensus	338		99.64
KOG0284|consensus	464		99.63
KOG1273|consensus	405		99.63
KOG0286|consensus	343		99.63
PTZ00420	568	coronin; Provisional	99.62
KOG0281|consensus	499		99.62
KOG0273|consensus	524		99.61
KOG0281|consensus	499		99.61
KOG0299|consensus	479		99.6
KOG0316|consensus	307		99.6
KOG0276|consensus	794		99.6
KOG0647|consensus	347		99.59
KOG0973|consensus	942		99.59
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.59
KOG0315|consensus	311		99.59
KOG0645|consensus	312		99.58
KOG0282|consensus	503		99.58
KOG0313|consensus	423		99.58
KOG0649|consensus	325		99.57
KOG0274|consensus	537		99.57
KOG0302|consensus	440		99.57
KOG0645|consensus	312		99.57
KOG2394|consensus	636		99.57
PLN00181	793	protein SPA1-RELATED; Provisional	99.56
KOG0295|consensus	406		99.55
KOG0282|consensus	503		99.55
KOG0264|consensus	422		99.55
KOG1446|consensus	311		99.55
KOG0294|consensus	362		99.55
KOG0310|consensus	487		99.54
KOG0274|consensus	537		99.54
KOG0264|consensus	422		99.54
KOG0647|consensus	347		99.54
KOG0306|consensus	888		99.54
KOG0278|consensus	334		99.53
KOG0308|consensus	735		99.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.52
KOG0306|consensus	888		99.52
PLN00181	793	protein SPA1-RELATED; Provisional	99.51
KOG0310|consensus	487		99.51
KOG0277|consensus	311		99.5
KOG0296|consensus	399		99.49
KOG0283|consensus	712		99.49
KOG0772|consensus	641		99.48
KOG0640|consensus	430		99.48
KOG0283|consensus	712		99.48
KOG0296|consensus	399		99.47
KOG1407|consensus	313		99.47
KOG0646|consensus	476		99.46
KOG0293|consensus	519		99.46
KOG0318|consensus	603		99.46
KOG0313|consensus	423		99.45
KOG0267|consensus	825		99.45
KOG1034|consensus	385		99.45
KOG0639|consensus	705		99.45
KOG1009|consensus	434		99.45
KOG0300|consensus	481		99.45
KOG0269|consensus	839		99.43
KOG0294|consensus	362		99.42
KOG0267|consensus	825		99.41
KOG0302|consensus	440		99.41
KOG0277|consensus	311		99.41
KOG3914|consensus	390		99.41
KOG0303|consensus	472		99.4
KOG0289|consensus	506		99.4
KOG0644|consensus	1113		99.39
KOG1446|consensus	311		99.38
KOG0299|consensus	479		99.38
KOG0639|consensus	705		99.37
KOG1274|consensus	933		99.37
KOG0640|consensus	430		99.37
KOG0303|consensus	472		99.36
KOG0305|consensus	484		99.36
KOG1034|consensus	385		99.35
KOG0278|consensus	334		99.34
KOG4283|consensus	397		99.34
KOG2111|consensus	346		99.33
KOG4283|consensus	397		99.32
KOG0293|consensus	519		99.3
KOG0643|consensus	327		99.3
KOG0269|consensus	839		99.3
KOG0771|consensus	398		99.3
KOG0641|consensus	350		99.3
KOG0646|consensus	476		99.29
KOG0305|consensus	484		99.29
KOG1445|consensus	1012		99.28
KOG0973|consensus	942		99.28
KOG0288|consensus	459		99.28
KOG0288|consensus	459		99.26
KOG0322|consensus	323		99.26
KOG1408|consensus	1080		99.25
KOG0301|consensus	745		99.25
KOG1408|consensus	1080		99.23
KOG1310|consensus	758		99.23
KOG1007|consensus	370		99.22
KOG1407|consensus	313		99.21
KOG0641|consensus	350		99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
KOG1539|consensus	910		99.21
KOG1539|consensus	910		99.2
KOG2110|consensus	391		99.2
KOG1036|consensus	323		99.19
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.19
KOG2445|consensus	361		99.19
KOG2048|consensus	691		99.18
KOG1332|consensus	299		99.18
KOG0301|consensus	745		99.17
KOG2394|consensus	636		99.16
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.16
KOG3881|consensus	412		99.15
KOG0321|consensus	720		99.12
KOG1538|consensus	1081		99.12
KOG1445|consensus	1012		99.1
KOG0642|consensus	577		99.09
KOG0300|consensus	481		99.09
KOG2919|consensus	406		99.08
KOG2110|consensus	391		99.08
KOG1063|consensus	764		99.06
KOG1007|consensus	370		99.06
KOG1036|consensus	323		99.03
KOG0270|consensus	463		99.03
COG2319	466	FOG: WD40 repeat [General function prediction only	99.01
KOG1272|consensus	545		99.0
KOG4547|consensus	541		99.0
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.0
KOG0268|consensus	433		98.95
KOG1332|consensus	299		98.94
KOG2048|consensus	691		98.94
KOG2055|consensus	514		98.93
KOG0268|consensus	433		98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.89
KOG4378|consensus	673		98.86
KOG1273|consensus	405		98.86
KOG0290|consensus	364		98.86
KOG0290|consensus	364		98.85
KOG0322|consensus	323		98.84
KOG0772|consensus	641		98.83
KOG0974|consensus	967		98.82
KOG4328|consensus	498		98.82
KOG1274|consensus	933		98.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG2096|consensus	420		98.78
KOG2096|consensus	420		98.77
KOG0307|consensus	1049		98.76
KOG1334|consensus	559		98.76
KOG1009|consensus	434		98.75
KOG0270|consensus	463		98.74
KOG2695|consensus	425		98.74
KOG0642|consensus	577		98.74
KOG1063|consensus	764		98.74
KOG0321|consensus	720		98.72
KOG0307|consensus	1049		98.72
KOG2111|consensus	346		98.71
KOG0974|consensus	967		98.71
KOG2445|consensus	361		98.7
KOG0280|consensus	339		98.7
KOG2919|consensus	406		98.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.7
KOG4328|consensus	498		98.69
KOG2106|consensus	626		98.68
KOG4227|consensus	609		98.68
KOG0649|consensus	325		98.67
KOG1963|consensus	792		98.67
KOG3881|consensus	412		98.66
KOG2139|consensus	445		98.65
KOG0650|consensus	733		98.64
KOG1524|consensus	737		98.64
KOG2055|consensus	514		98.62
KOG1188|consensus	376		98.61
KOG1523|consensus	361		98.6
KOG2321|consensus	703		98.59
COG2319	466	FOG: WD40 repeat [General function prediction only	98.59
KOG2106|consensus	626		98.59
KOG0644|consensus	1113		98.58
KOG4227|consensus	609		98.54
KOG0280|consensus	339		98.52
KOG1310|consensus	758		98.49
KOG0650|consensus	733		98.49
KOG4378|consensus	673		98.43
KOG1523|consensus	361		98.42
KOG1963|consensus	792		98.38
KOG1587|consensus	555		98.36
KOG2695|consensus	425		98.35
KOG1409|consensus	404		98.33
KOG0771|consensus	398		98.3
KOG1272|consensus	545		98.29
KOG1240|consensus	1431		98.28
KOG1538|consensus	1081		98.28
KOG4714|consensus	319		98.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.26
KOG1188|consensus	376		98.2
PRK05137	435	tolB translocation protein TolB; Provisional	98.18
PRK01742	429	tolB translocation protein TolB; Provisional	98.17
COG4946	668	Uncharacterized protein related to the periplasmic	98.15
PRK01742	429	tolB translocation protein TolB; Provisional	98.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.1
KOG1587|consensus	555		98.09
KOG1645|consensus	463		98.07
KOG1517|consensus	1387		98.06
KOG1517|consensus	1387		98.05
PRK11028	330	6-phosphogluconolactonase; Provisional	98.02
KOG2315|consensus	566		98.02
KOG4547|consensus	541		98.01
PRK03629	429	tolB translocation protein TolB; Provisional	97.98
PRK11028	330	6-phosphogluconolactonase; Provisional	97.97
PRK02889	427	tolB translocation protein TolB; Provisional	97.94
KOG4532|consensus	344		97.93
KOG1275|consensus	1118		97.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.91
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.88
PRK04922	433	tolB translocation protein TolB; Provisional	97.88
KOG1524|consensus	737		97.87
KOG1832|consensus	1516		97.87
KOG2079|consensus	1206		97.86
KOG1240|consensus	1431		97.86
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.84
KOG1064|consensus	2439		97.83
KOG4640|consensus	665		97.77
PRK03629	429	tolB translocation protein TolB; Provisional	97.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.75
PRK00178	430	tolB translocation protein TolB; Provisional	97.74
KOG2321|consensus	703		97.73
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.71
KOG1064|consensus	2439		97.69
KOG2041|consensus	1189		97.67
KOG1334|consensus	559		97.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.64
PRK04792	448	tolB translocation protein TolB; Provisional	97.62
KOG4497|consensus	447		97.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.58
PRK01029	428	tolB translocation protein TolB; Provisional	97.57
PRK02889	427	tolB translocation protein TolB; Provisional	97.45
KOG2315|consensus	566		97.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.44
PRK01029	428	tolB translocation protein TolB; Provisional	97.4
KOG4649|consensus	354		97.4
KOG4532|consensus	344		97.38
KOG1409|consensus	404		97.37
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.37
PRK05137	435	tolB translocation protein TolB; Provisional	97.37
KOG1354|consensus	433		97.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.35
KOG4497|consensus	447		97.35
PRK04922	433	tolB translocation protein TolB; Provisional	97.31
KOG2139|consensus	445		97.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.2
KOG2314|consensus	698		97.12
KOG2079|consensus	1206		97.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.11
KOG4190|consensus	1034		97.06
PRK00178	430	tolB translocation protein TolB; Provisional	97.04
KOG4640|consensus	665		97.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.03
KOG0309|consensus	1081		97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.88
KOG3914|consensus	390		96.85
KOG1354|consensus	433		96.84
KOG4190|consensus	1034		96.81
KOG1275|consensus	1118		96.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.69
KOG3617|consensus	1416		96.65
KOG1912|consensus	1062		96.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.43
KOG4714|consensus	319		96.41
PRK04792	448	tolB translocation protein TolB; Provisional	96.41
KOG0309|consensus	1081		96.39
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.12
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.06
KOG2314|consensus	698		96.0
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.98
COG4946	668	Uncharacterized protein related to the periplasmic	95.91
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.86
KOG2395|consensus	644		95.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.75
KOG0882|consensus	558		95.55
KOG2444|consensus	238		95.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.43
PRK04043	419	tolB translocation protein TolB; Provisional	95.26
PRK02888	635	nitrous-oxide reductase; Validated	95.22
KOG2066|consensus	846		95.16
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.13
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.05
KOG2066|consensus	846		94.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.93
KOG2444|consensus	238		94.9
KOG3621|consensus	726		94.73
KOG1912|consensus	1062		94.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.83
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.48
KOG2041|consensus	1189		93.26
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.21
KOG1832|consensus	1516		93.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.92
KOG2114|consensus	933		92.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	92.5
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	92.31
KOG3621|consensus	726		92.12
KOG4649|consensus	354		92.11
KOG1920|consensus	1265		92.06
PRK04043	419	tolB translocation protein TolB; Provisional	91.82
COG5167	776	VID27 Protein involved in vacuole import and degra	91.77
PRK02888	635	nitrous-oxide reductase; Validated	91.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.13
KOG4499|consensus	310		91.06
KOG1645|consensus	463		90.87
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.48
KOG0882|consensus	558		90.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	90.13
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.97
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	89.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	89.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.35
KOG3616|consensus	1636		89.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.0
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.98
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.52
KOG3617|consensus	1416		88.21
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	88.21
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	88.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.08
KOG1920|consensus	1265		87.5
KOG1916|consensus	1283		87.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	86.76
KOG4499|consensus	310		86.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	84.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	84.22
KOG2114|consensus	933		83.6
PHA02713	557	hypothetical protein; Provisional	82.99
KOG2377|consensus	657		82.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	82.04
COG3391	381	Uncharacterized conserved protein [Function unknow	81.69
PRK13616	591	lipoprotein LpqB; Provisional	81.29
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.16
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	80.06

>KOG0271|consensus

Probab=99.86  E-value=2.4e-21  Score=104.21  Aligned_cols=85  Identities=26%  Similarity=0.418  Sum_probs=79.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE-Eee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK-CNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~   78 (86)
                      +|-|+.|+|+|..+++|+.|.++++||..+..+..++++|...|.|++ +|++..+++|+.|+.|++||.++|+++ ..+
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            578999999999999999999999999999999999999999999999 999999999999999999999988766 678


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|...|
T Consensus       197 ~gH~K~I  203 (480)
T KOG0271|consen  197 RGHKKWI  203 (480)
T ss_pred             cCcccce
Confidence            8887665

>KOG0263|consensus

Probab=99.85  E-value=5.4e-21  Score=108.87  Aligned_cols=84  Identities=26%  Similarity=0.529  Sum_probs=80.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.|+.|+|+..++++|+.|.++++||..++.....+.+|..+|.++. +|+|..+++|+.|+.|.+||+..+..+..+.+
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~  617 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG  617 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence            56899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |++.|
T Consensus       618 Ht~ti  622 (707)
T KOG0263|consen  618 HTGTI  622 (707)
T ss_pred             ccCce
Confidence            97765

>KOG0266|consensus

Probab=99.84  E-value=1.3e-19  Score=101.46  Aligned_cols=85  Identities=26%  Similarity=0.468  Sum_probs=79.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEc-cCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDL-RTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .|..++|+||+.++++++.|.++++||+ ..+..+.++.+|...|+++. +|.+..+++++.|+++++||++++++...+
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence            3789999999999999999999999999 45578899999999999999 999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|.+.|
T Consensus       285 ~~hs~~i  291 (456)
T KOG0266|consen  285 KGHSDGI  291 (456)
T ss_pred             eccCCce
Confidence            9999876

>KOG0272|consensus

Probab=99.83  E-value=3.4e-20  Score=100.44  Aligned_cols=85  Identities=28%  Similarity=0.333  Sum_probs=81.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|.+++|++||.++++|+.|..-+|||++++..+..+.+|..+|..+. +|+|..+++|+.|+++++||++....+..+-
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip  384 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP  384 (459)
T ss_pred             ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence            367999999999999999999999999999999999999999999999 9999999999999999999999998999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|++.|
T Consensus       385 AH~nlV  390 (459)
T KOG0272|consen  385 AHSNLV  390 (459)
T ss_pred             cccchh
Confidence            998766

>KOG0271|consensus

Probab=99.81  E-value=2.2e-19  Score=96.86  Aligned_cols=84  Identities=32%  Similarity=0.533  Sum_probs=80.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |..+.|+||+++|++++.|..|++||-++++.+..+++|-..|+.++ +.+.+++++++.|.++++|++++.+..+.+-+
T Consensus       370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG  449 (480)
T KOG0271|consen  370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG  449 (480)
T ss_pred             eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence            67899999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |.+.|
T Consensus       450 h~DEV  454 (480)
T KOG0271|consen  450 HADEV  454 (480)
T ss_pred             CCceE
Confidence            98776

>KOG0319|consensus

Probab=99.80  E-value=1.2e-18  Score=99.48  Aligned_cols=84  Identities=25%  Similarity=0.380  Sum_probs=80.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |+|++++|+..+|++|+.|++.++|+++......++++|+..++++. ++..+.+++++.|.+|++|.+.+..|+++|.|
T Consensus       466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            78999999999999999999999999998889999999999999999 89999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |+..|
T Consensus       546 H~~aV  550 (775)
T KOG0319|consen  546 HTSAV  550 (775)
T ss_pred             cccee
Confidence            99876

>KOG0266|consensus

Probab=99.79  E-value=9.2e-18  Score=94.20  Aligned_cols=83  Identities=30%  Similarity=0.526  Sum_probs=76.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe--EEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS--LKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~   77 (86)
                      +|++++|+|+++++++|+.|+++++||+.++++...+.+|.+.|.+++ .+++..+++++.|+.+++||+.++.  +...
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            478999999999999999999999999999999999999999999999 8999999999999999999999988  5677


Q ss_pred             ecCCCC
Q psy13945         78 IQGPTE   83 (86)
Q Consensus        78 ~~~~~~   83 (86)
                      +.++..
T Consensus       328 ~~~~~~  333 (456)
T KOG0266|consen  328 LSGAEN  333 (456)
T ss_pred             ccCCCC
Confidence            766544

>KOG0272|consensus

Probab=99.78  E-value=2.4e-19  Score=97.24  Aligned_cols=84  Identities=19%  Similarity=0.339  Sum_probs=80.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |..++|+|+|+++.+++-|.+-++||+.++.++....+|...|++++ .++|..+++|+.|..-++||+++|.++-.+.+
T Consensus       264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             heeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence            66899999999999999999999999999999888899999999999 99999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |...|
T Consensus       344 H~k~I  348 (459)
T KOG0272|consen  344 HIKEI  348 (459)
T ss_pred             cccce
Confidence            98776

>KOG0279|consensus

Probab=99.78  E-value=5.9e-18  Score=88.13  Aligned_cols=80  Identities=18%  Similarity=0.332  Sum_probs=74.6

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|+|+.|+|+  ...|++++.|+++++||+.+-+....+-+|++.+..+. +|||..+++|+.|+.+.+||++.++++..
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            4899999997  68899999999999999999999899999999999999 99999999999999999999999999888


Q ss_pred             ecC
Q psy13945         78 IQG   80 (86)
Q Consensus        78 ~~~   80 (86)
                      +.+
T Consensus       230 l~a  232 (315)
T KOG0279|consen  230 LEA  232 (315)
T ss_pred             ccC
Confidence            753

>KOG0284|consensus

Probab=99.77  E-value=1.1e-18  Score=94.59  Aligned_cols=85  Identities=22%  Similarity=0.359  Sum_probs=79.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|++++|+|+...|++.++|+++++||....+....+++|..-|.+++ +|....+++++.|..|++||.+++.|+.++.
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence            478999999999999999999999999998888888899999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus       262 ~HKntV  267 (464)
T KOG0284|consen  262 GHKNTV  267 (464)
T ss_pred             hccceE
Confidence            887654

>PTZ00421 coronin; Provisional

Probab=99.77  E-value=8.2e-17  Score=90.97  Aligned_cols=83  Identities=19%  Similarity=0.317  Sum_probs=75.7

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .|.+++|+|++ ..+++++.|+++++||+.+++....+.+|...|.++. ++++..+++++.|+.|++||++++..+..+
T Consensus       127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            37789999975 6899999999999999999988888888999999999 999999999999999999999999988888


Q ss_pred             cCCCC
Q psy13945         79 QGPTE   83 (86)
Q Consensus        79 ~~~~~   83 (86)
                      .+|..
T Consensus       207 ~~H~~  211 (493)
T PTZ00421        207 EAHAS  211 (493)
T ss_pred             ecCCC
Confidence            88764

>KOG0316|consensus

Probab=99.76  E-value=1.1e-17  Score=85.81  Aligned_cols=86  Identities=19%  Similarity=0.420  Sum_probs=81.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|..+.|+-||++.++.+.|.++++|+...+..+.++.+|..+|..++ ..++..+++++.|..+.+||..+|+..+.++
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r   98 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR   98 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence            578899999999999999999999999999999999999999999999 8999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy13945         80 GPTEPVH   86 (86)
Q Consensus        80 ~~~~~v~   86 (86)
                      +|...||
T Consensus        99 gH~aqVN  105 (307)
T KOG0316|consen   99 GHLAQVN  105 (307)
T ss_pred             cccceee
Confidence            9988764

>PTZ00421 coronin; Provisional

Probab=99.76  E-value=6.7e-17  Score=91.33  Aligned_cols=85  Identities=13%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCC-------ceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~   70 (86)
                      +|.+++|+| +++++++++.|++|++||+.++       +.+..+.+|...|.++. +|++ ..+++++.|+.|++||++
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            478999999 8899999999999999998754       24567888999999999 8875 689999999999999999


Q ss_pred             CCeEEEeecCCCCCC
Q psy13945         71 DGSLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~~~~~~~v   85 (86)
                      ++..+..+.+|.+.|
T Consensus       157 tg~~~~~l~~h~~~V  171 (493)
T PTZ00421        157 RGKAVEVIKCHSDQI  171 (493)
T ss_pred             CCeEEEEEcCCCCce
Confidence            999998898887765

>KOG0292|consensus

Probab=99.76  E-value=9.4e-18  Score=98.04  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=81.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ||.+++|+|...++++|++|-.|++|+.+..+++.++.+|..-|..+. ++.-+|+++++.|.+|++|+..+++|+..+.
T Consensus        53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             ccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence            688999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      ||.-.|
T Consensus       133 GHnHYV  138 (1202)
T KOG0292|consen  133 GHNHYV  138 (1202)
T ss_pred             cCceEE
Confidence            997554

>KOG0286|consensus

Probab=99.75  E-value=8.1e-17  Score=84.54  Aligned_cols=85  Identities=21%  Similarity=0.476  Sum_probs=77.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ++.|+.|-+| ..|++++.|.+.-+||+++++....+.+|.+-|.++. +| ++..+++|+.|...++||+|.+.+.+.|
T Consensus       147 ylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  147 YLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             eeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            3678888874 5578889999999999999999999999999999999 88 8999999999999999999999999999


Q ss_pred             cCCCCCCC
Q psy13945         79 QGPTEPVH   86 (86)
Q Consensus        79 ~~~~~~v~   86 (86)
                      .+|.+.|+
T Consensus       226 ~ghesDIN  233 (343)
T KOG0286|consen  226 EGHESDIN  233 (343)
T ss_pred             cccccccc
Confidence            99988764

>KOG0295|consensus

Probab=99.75  E-value=9e-17  Score=86.22  Aligned_cols=73  Identities=15%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCC
Q psy13945         12 SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   84 (86)
                      +.+.+++.|+++++||+.++.++.++.+|...|..++ +|.|.+++++..|+++++||+++++|..++..|+.-
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf  378 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF  378 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence            5889999999999999999999999999999999999 999999999999999999999999999999887643

>KOG0319|consensus

Probab=99.74  E-value=3.6e-17  Score=93.60  Aligned_cols=84  Identities=18%  Similarity=0.391  Sum_probs=79.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.++.|++..+.+++++.|+++++|.+++..+++++.+|...|.... -.++..+++++.|+.+++|+++++.|..++..
T Consensus       508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence            67999999999999999999999999999999999999999998888 67899999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |.+.|
T Consensus       588 H~Drv  592 (775)
T KOG0319|consen  588 HNDRV  592 (775)
T ss_pred             cccee
Confidence            98875

>KOG0265|consensus

Probab=99.73  E-value=1.3e-16  Score=83.89  Aligned_cols=85  Identities=25%  Similarity=0.413  Sum_probs=75.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |..+.|+|+|.++++|+.|..|.+|+... .+-.-.+++|.+.|..+. ..++..+++++.|.+++.||.++|++.+.++
T Consensus        50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            67899999999999999999999999653 333566789999999999 9999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy13945         80 GPTEPVH   86 (86)
Q Consensus        80 ~~~~~v~   86 (86)
                      +|.+-|+
T Consensus       130 ~h~~~vN  136 (338)
T KOG0265|consen  130 GHTSFVN  136 (338)
T ss_pred             cccceee
Confidence            9986553

>KOG0279|consensus

Probab=99.73  E-value=7.2e-17  Score=84.18  Aligned_cols=85  Identities=15%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC-ccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH-EGEILQLV-TAD--DGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      |.+++|++|++.|++|++|.++.+|+............. .+.|.|+. +|+  ...+++++.|+++++||+++-+....
T Consensus       108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~  187 (315)
T KOG0279|consen  108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT  187 (315)
T ss_pred             eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence            679999999999999999999999997755443333333 78899999 887  78899999999999999999998899


Q ss_pred             ecCCCCCCC
Q psy13945         78 IQGPTEPVH   86 (86)
Q Consensus        78 ~~~~~~~v~   86 (86)
                      +.+|+..++
T Consensus       188 ~~gh~~~v~  196 (315)
T KOG0279|consen  188 FIGHSGYVN  196 (315)
T ss_pred             cccccccEE
Confidence            999987653

>KOG0285|consensus

Probab=99.73  E-value=1.3e-16  Score=85.81  Aligned_cols=84  Identities=19%  Similarity=0.400  Sum_probs=77.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.|++.+|....++++++|.++++||+++...+..+.+|...|..+. .|....+++++.|.+|++||++.|+...++..
T Consensus       238 V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~  317 (460)
T KOG0285|consen  238 VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH  317 (460)
T ss_pred             eEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec
Confidence            68999999999999999999999999999999999999999999999 88889999999999999999999988888877


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |...|
T Consensus       318 hkksv  322 (460)
T KOG0285|consen  318 HKKSV  322 (460)
T ss_pred             cccee
Confidence            76544

>KOG0291|consensus

Probab=99.73  E-value=2.2e-16  Score=91.01  Aligned_cols=81  Identities=27%  Similarity=0.423  Sum_probs=76.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+++++++|||+++++|++|+.|++||...+-+..++..|+..|+.+. +..+..+++.+.|++++.||+..+++.++|.
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            368999999999999999999999999999999999999999999999 8999999999999999999999998888886


Q ss_pred             CC
Q psy13945         80 GP   81 (86)
Q Consensus        80 ~~   81 (86)
                      ..
T Consensus       432 ~P  433 (893)
T KOG0291|consen  432 SP  433 (893)
T ss_pred             CC
Confidence            54

>KOG0263|consensus

Probab=99.73  E-value=3.1e-17  Score=93.94  Aligned_cols=85  Identities=16%  Similarity=0.290  Sum_probs=81.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ||..+.|+|-|-+|++++.|++-++|......++..+.+|..-|.|+. +|+..++++|+.|.++++||..+|..++.|.
T Consensus       495 PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~  574 (707)
T KOG0263|consen  495 PVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT  574 (707)
T ss_pred             ceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence            688999999999999999999999999998888889999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      ||.+.|
T Consensus       575 GH~~~V  580 (707)
T KOG0263|consen  575 GHKGPV  580 (707)
T ss_pred             CCCCce
Confidence            999876

>KOG0285|consensus

Probab=99.72  E-value=3.6e-17  Score=87.94  Aligned_cols=85  Identities=22%  Similarity=0.405  Sum_probs=79.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.|+++.|.++.|++|+.|+++.+||+.+++...++.+|...|..++ ++-..++.+++.|+++++||++..+.++.+.
T Consensus       153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh  232 (460)
T KOG0285|consen  153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH  232 (460)
T ss_pred             eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc
Confidence            588999999999999999999999999999999999999999999999 9999999999999999999999999888888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|-+.|
T Consensus       233 GHlS~V  238 (460)
T KOG0285|consen  233 GHLSGV  238 (460)
T ss_pred             ccccee
Confidence            887665

>KOG0276|consensus

Probab=99.72  E-value=1.5e-17  Score=94.22  Aligned_cols=86  Identities=21%  Similarity=0.234  Sum_probs=77.6

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e--CCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T--ADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|.+++|+| |.+.+++++.|+++++|.+....+-.++.+|...|.|+. -  ++.+.+++|+.|.++++||+++..|++
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH
Confidence            378999999 557899999999999999988888889999999999998 4  467799999999999999999999999


Q ss_pred             eecCCCCCCC
Q psy13945         77 NIQGPTEPVH   86 (86)
Q Consensus        77 ~~~~~~~~v~   86 (86)
                      ++.||...|+
T Consensus       222 TLeGHt~Nvs  231 (794)
T KOG0276|consen  222 TLEGHTNNVS  231 (794)
T ss_pred             Hhhcccccce
Confidence            9999988763

>KOG0318|consensus

Probab=99.72  E-value=4.1e-16  Score=86.97  Aligned_cols=78  Identities=27%  Similarity=0.517  Sum_probs=73.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe---CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK---GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      |.|+.|+|||.++++.+.|+++.+||-.+++.+..+.   +|++.|+.+. +|++..+++.+.|.++++||..++.+.++
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            6899999999999999999999999999999988887   8999999999 99999999999999999999999888877


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       273 ~~  274 (603)
T KOG0318|consen  273 WP  274 (603)
T ss_pred             ee
Confidence            64

>KOG0275|consensus

Probab=99.71  E-value=2.1e-18  Score=92.03  Aligned_cols=86  Identities=23%  Similarity=0.419  Sum_probs=81.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.|+.|+.|.+.+++|+.||.+++|.+.++.++.++. +|...|.++. +.++..+++++.|.++++..+..|+++..|
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf  344 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF  344 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence            57899999999999999999999999999999998886 7999999999 899999999999999999999999999999


Q ss_pred             cCCCCCCC
Q psy13945         79 QGPTEPVH   86 (86)
Q Consensus        79 ~~~~~~v~   86 (86)
                      ++|++.|+
T Consensus       345 rGHsSyvn  352 (508)
T KOG0275|consen  345 RGHSSYVN  352 (508)
T ss_pred             cCcccccc
Confidence            99998874

>KOG0308|consensus

Probab=99.71  E-value=2.2e-16  Score=89.67  Aligned_cols=85  Identities=27%  Similarity=0.356  Sum_probs=79.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++.++.|..|++|+..+.+++||-.+++.+..+++|...|..+. ..++..+++++.|++|++||+.+.+|+.++.
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            467889999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|.+.|
T Consensus       253 vH~e~V  258 (735)
T KOG0308|consen  253 VHKEGV  258 (735)
T ss_pred             eccCce
Confidence            998764

>PTZ00420 coronin; Provisional

Probab=99.70  E-value=2.5e-15  Score=86.00  Aligned_cols=83  Identities=6%  Similarity=0.071  Sum_probs=72.0

Q ss_pred             CeeEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSW-IAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .|.+++|+|++.. +++++.|+++++||+.+++....+. +...|.++. ++++..+++++.|+.+++||++++..+..+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            3789999998875 5688999999999999888766655 457799999 999999999999999999999999999989


Q ss_pred             cCCCCC
Q psy13945         79 QGPTEP   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      .+|.+.
T Consensus       206 ~gH~g~  211 (568)
T PTZ00420        206 HIHDGG  211 (568)
T ss_pred             ecccCC
Confidence            888754

>KOG0315|consensus

Probab=99.67  E-value=4.2e-15  Score=76.97  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..+.+|||+.++++.+.|.++++|+.++. +....+.+|+..++... +.++.++++++.|++.++|+++.++.+....
T Consensus       218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            567889999999999999999999999877 55677788998999888 8999999999999999999999999999888


Q ss_pred             CCCC
Q psy13945         80 GPTE   83 (86)
Q Consensus        80 ~~~~   83 (86)
                      +|..
T Consensus       298 gh~K  301 (311)
T KOG0315|consen  298 GHHK  301 (311)
T ss_pred             Cccc
Confidence            8753

>KOG0292|consensus

Probab=99.66  E-value=1.4e-16  Score=93.36  Aligned_cols=85  Identities=21%  Similarity=0.404  Sum_probs=80.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.+++|+|..+.++++-..|.|.+||.+=+..+.++..|.++|..+. +|..+.+++|+.|..|++|++.+.+|++++.+
T Consensus        12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G   91 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG   91 (1202)
T ss_pred             ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence            56899999999999999999999999998888999999999999999 99999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         81 PTEPVH   86 (86)
Q Consensus        81 ~~~~v~   86 (86)
                      |-+.||
T Consensus        92 HlDYVR   97 (1202)
T KOG0292|consen   92 HLDYVR   97 (1202)
T ss_pred             ccceeE
Confidence            988874

>KOG0289|consensus

Probab=99.66  E-value=1.2e-15  Score=83.59  Aligned_cols=77  Identities=21%  Similarity=0.356  Sum_probs=71.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +++.+|+|||-.+.+|..|+.+++||++.......|.+|.++|..++ +.+|-++++++.|+.+++||+|..+.++++
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee
Confidence            67899999999999999999999999999998999999999999999 889999999999999999999977655554

>KOG0273|consensus

Probab=99.65  E-value=3.4e-15  Score=82.43  Aligned_cols=85  Identities=22%  Similarity=0.386  Sum_probs=77.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC---------CCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD---------DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~---------~~~~~~~~~~~~i~~~~~~   70 (86)
                      +|.++.|.|.+.++++++.|+++++|..........+.+|.+.|+.+. +|.         +..+++++.|+++++||+.
T Consensus       361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            478999999999999999999999999888888888999999999888 764         3468999999999999999


Q ss_pred             CCeEEEeecCCCCCC
Q psy13945         71 DGSLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~~~~~~~v   85 (86)
                      .+.+++.|..|+.+|
T Consensus       441 ~gv~i~~f~kH~~pV  455 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPV  455 (524)
T ss_pred             CCceeEeeccCCCce
Confidence            999999999999877

>KOG0275|consensus

Probab=99.65  E-value=8.4e-17  Score=86.05  Aligned_cols=84  Identities=21%  Similarity=0.410  Sum_probs=72.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE--------EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA--------SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.|..|+|||+++++|+-||.+-+|+..+++...        .+.-+...|.|+. +.+..++++|+.|+.|++|.+++|
T Consensus       216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence            4688999999999999999999999998877633        3344567899999 899999999999999999999999


Q ss_pred             eEEEeec-CCCCCC
Q psy13945         73 SLKCNIQ-GPTEPV   85 (86)
Q Consensus        73 ~~~~~~~-~~~~~v   85 (86)
                      .|+..|. +|+..|
T Consensus       296 ~ClRrFdrAHtkGv  309 (508)
T KOG0275|consen  296 QCLRRFDRAHTKGV  309 (508)
T ss_pred             hHHHHhhhhhccCe
Confidence            9999886 777655

>KOG0291|consensus

Probab=99.64  E-value=7.2e-15  Score=84.96  Aligned_cols=85  Identities=24%  Similarity=0.434  Sum_probs=76.8

Q ss_pred             CeeEEEECCCCCEEEEEeCC-CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQAS-GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|..++|+..|..++.|+.. |.+.||+.....-+.+.++|...+.+++ +||++.+++|+.|++|++||.+.+.|+.+|
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF  388 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF  388 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence            46788898889888877654 7999999988888888899999999999 999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      ..|++.|
T Consensus       389 teHts~V  395 (893)
T KOG0291|consen  389 TEHTSGV  395 (893)
T ss_pred             ccCCCce
Confidence            9999876

>KOG0643|consensus

Probab=99.64  E-value=1.1e-14  Score=76.02  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=75.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |++.+.|+.+|-++++.+.|.+..+|-..+++.+.++.+|.+.|++++ ..+...+++|+.|.++++||..+|+++..+.
T Consensus        12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence            678999999999999999999999999889999999999999999999 8999999999999999999999999887765

>KOG0265|consensus

Probab=99.64  E-value=2.7e-15  Score=79.10  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=68.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|..+.|.+|++.+++.+.|++++.||..+++.+.++++|...+.++. .. ...++.+++.|+++++||+|+..+++++
T Consensus        92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            478899999999999999999999999999999999999999998887 44 3445568899999999999977666655

>KOG0284|consensus

Probab=99.63  E-value=2.4e-16  Score=85.68  Aligned_cols=84  Identities=21%  Similarity=0.371  Sum_probs=77.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.+++|+|...++++++.|..|++||.+++.++.++.+|+..|..+. .+++.++++++.|..++++|+++-+-++.+++
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence            67999999999999999999999999999999999999999999999 89999999999999999999997777788888


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |...|
T Consensus       305 Hkkdv  309 (464)
T KOG0284|consen  305 HKKDV  309 (464)
T ss_pred             chhhh
Confidence            87654

>KOG1273|consensus

Probab=99.63  E-value=3e-15  Score=79.67  Aligned_cols=77  Identities=29%  Similarity=0.406  Sum_probs=72.8

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|+.|++.|.+++.|..+|.+.+||..+......+.+|-.+|.++. +++++.+++++.|..+.+||+..|.+++.++
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            5899999999999999999999999999888888999999999999 9999999999999999999999998887765

>KOG0286|consensus

Probab=99.63  E-value=1.1e-14  Score=76.70  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=73.1

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |.+++++| +++.+++|+.|+..++||++.+...+.|.+|..-|.++. +|++.-+++|+.|++.++||+|....+..+.
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence            67899999 899999999999999999999999999999999999999 9999999999999999999999887777665

>PTZ00420 coronin; Provisional

Probab=99.62  E-value=5.8e-14  Score=80.56  Aligned_cols=79  Identities=15%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCc--------eEEEEeCCccceEEEE-eCCCCe-EEEEeCCCCEEEEeC
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGT--------SLASWKGHEGEILQLV-TADDGT-LISSSLDQTISAWHT   69 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~~i~~~~~   69 (86)
                      +|.+++|+|+ +.++++++.|+++++||+.++.        ....+.+|...|.++. +|++.. +++++.|+.+++||+
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            4789999996 7899999999999999987532        2345678999999999 998765 468999999999999


Q ss_pred             CCCeEEEeec
Q psy13945         70 NDGSLKCNIQ   79 (86)
Q Consensus        70 ~~~~~~~~~~   79 (86)
                      ++++....+.
T Consensus       156 ~tg~~~~~i~  165 (568)
T PTZ00420        156 ENEKRAFQIN  165 (568)
T ss_pred             CCCcEEEEEe
Confidence            9887666554

>KOG0281|consensus

Probab=99.62  E-value=5.2e-16  Score=83.56  Aligned_cols=82  Identities=21%  Similarity=0.315  Sum_probs=71.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      |+.+.|  |.++|++++.|.++++|+..+++.+.++.+|+-.|.|+. ..+..+++|+.|.+|++||+..|.|+..++||
T Consensus       323 VNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ-Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH  399 (499)
T KOG0281|consen  323 VNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ-YRDRLVVSGSSDNTIRLWDIECGACLRVLEGH  399 (499)
T ss_pred             eeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehh-ccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence            455555  567999999999999999999999999999988887764 45788999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         82 TEPVH   86 (86)
Q Consensus        82 ~~~v~   86 (86)
                      .+-|+
T Consensus       400 EeLvR  404 (499)
T KOG0281|consen  400 EELVR  404 (499)
T ss_pred             HHhhh
Confidence            87653

>KOG0273|consensus

Probab=99.61  E-value=1.4e-14  Score=80.07  Aligned_cols=82  Identities=20%  Similarity=0.441  Sum_probs=75.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |++++|+.+|.++++|..+|.+++|+ ..+..+.++..|+++|.++. ...+.++++++-|+++.+||..++...+.+.-
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            78999999999999999999999999 56888888889999999999 99999999999999999999999999888887


Q ss_pred             CCCC
Q psy13945         81 PTEP   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      |+.+
T Consensus       317 ~s~~  320 (524)
T KOG0273|consen  317 HSAP  320 (524)
T ss_pred             ccCC
Confidence            7654

>KOG0281|consensus

Probab=99.61  E-value=7e-16  Score=83.08  Aligned_cols=81  Identities=25%  Similarity=0.412  Sum_probs=70.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      |.|+.+  |...+++|..|.++++||..+......+.+|.+.|.|+. .+.+.+++|+.|.++++||.++++++.++.+|
T Consensus       200 VYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq-yd~rviisGSSDsTvrvWDv~tge~l~tlihH  276 (499)
T KOG0281|consen  200 VYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ-YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH  276 (499)
T ss_pred             eEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee-ccceEEEecCCCceEEEEeccCCchhhHHhhh
Confidence            345544  678899999999999999998888999999999999986 34559999999999999999999999999988


Q ss_pred             CCCC
Q psy13945         82 TEPV   85 (86)
Q Consensus        82 ~~~v   85 (86)
                      .+.|
T Consensus       277 ceaV  280 (499)
T KOG0281|consen  277 CEAV  280 (499)
T ss_pred             ccee
Confidence            8765

>KOG0299|consensus

Probab=99.60  E-value=2.8e-15  Score=82.40  Aligned_cols=84  Identities=27%  Similarity=0.434  Sum_probs=77.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.+++.++||+++++|+.+..+.+|+..+.+.+..+.+|.+.|.++. ......+++++.|..+++|++.....+.++.+
T Consensus       205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence            56899999999999999999999999999999999999999999999 67777889999999999999998888888889


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |++.|
T Consensus       285 Hqd~v  289 (479)
T KOG0299|consen  285 HQDGV  289 (479)
T ss_pred             Cccce
Confidence            98765

>KOG0316|consensus

Probab=99.60  E-value=8.8e-15  Score=75.40  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=71.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC--eEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG--SLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~   78 (86)
                      |..++.+.|+..+++++.|..+.+||..++++..++++|..+|..+. ..+...+++++.|..+++||.+..  ++++.+
T Consensus        62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence            45667788999999999999999999999999999999999999999 888999999999999999999864  577766


Q ss_pred             cCCCC
Q psy13945         79 QGPTE   83 (86)
Q Consensus        79 ~~~~~   83 (86)
                      ....+
T Consensus       142 dea~D  146 (307)
T KOG0316|consen  142 DEAKD  146 (307)
T ss_pred             hhhcC
Confidence            54433

>KOG0276|consensus

Probab=99.60  E-value=3.4e-14  Score=81.09  Aligned_cols=86  Identities=24%  Similarity=0.413  Sum_probs=78.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT-SLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++.+|..++++++++|-+|++||.+... +.+++.+|..-|.++. .| +...+++++.|+++++|.+-+..+.++
T Consensus        99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT  178 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT  178 (794)
T ss_pred             ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence            47899999999999999999999999998654 4688999999999999 66 688999999999999999999999999


Q ss_pred             ecCCCCCCC
Q psy13945         78 IQGPTEPVH   86 (86)
Q Consensus        78 ~~~~~~~v~   86 (86)
                      +.+|...|+
T Consensus       179 l~gHekGVN  187 (794)
T KOG0276|consen  179 LEGHEKGVN  187 (794)
T ss_pred             eeccccCcc
Confidence            999998875

>KOG0647|consensus

Probab=99.59  E-value=5.2e-14  Score=74.46  Aligned_cols=78  Identities=21%  Similarity=0.292  Sum_probs=66.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      ||.+++|+.||..+++|+.|+.+++||+.++.. ..+..|..+|..+. -+.  ...+++|+.|.+|+.||.++..++.+
T Consensus        74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen   74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT  152 (347)
T ss_pred             CeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence            688999999999999999999999999998854 45567889998887 443  45789999999999999998877766


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       153 ~~  154 (347)
T KOG0647|consen  153 LQ  154 (347)
T ss_pred             ee
Confidence            64

>KOG0973|consensus

Probab=99.59  E-value=3.5e-14  Score=83.94  Aligned_cols=85  Identities=25%  Similarity=0.520  Sum_probs=76.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC-------C-----------ceEEEEeCCccceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT-------G-----------TSLASWKGHEGEILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~-----------~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~   61 (86)
                      .|.|+.|++||+++++|++|+.+.+|....       +           ++...+++|...|..+. +|++.++++++.|
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            478999999999999999999999998662       1           23567789999999999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         62 QTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      ++|.+|+.++.+.+..+++|.+.|
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~V  174 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLV  174 (942)
T ss_pred             ceEEEEccccceeeeeeecccccc
Confidence            999999999999999999998765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.59  E-value=1.5e-13  Score=71.70  Aligned_cols=84  Identities=33%  Similarity=0.557  Sum_probs=73.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++.+++++.++.+.+|+..+++....+..+...+..+. .+++..+++++.++.+.+|++..++....+.
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~   90 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT   90 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence            588999999999999999999999999988887777888888888888 8888899999999999999999877777776


Q ss_pred             CCCCC
Q psy13945         80 GPTEP   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      .|...
T Consensus        91 ~~~~~   95 (289)
T cd00200          91 GHTSY   95 (289)
T ss_pred             ccCCc
Confidence            66543

>KOG0315|consensus

Probab=99.59  E-value=2.4e-14  Score=74.26  Aligned_cols=76  Identities=20%  Similarity=0.483  Sum_probs=65.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      |+.+.|..||+..++|++||++++||++.......++ +..+|.++. +|+...++++..++.|++||+....+...+
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            6889999999999999999999999998855555544 568999999 999999999999999999999876555444

>KOG0645|consensus

Probab=99.58  E-value=2.2e-13  Score=71.30  Aligned_cols=85  Identities=22%  Similarity=0.371  Sum_probs=75.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC---CeE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG--TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND---GSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~   74 (86)
                      .|..++|+|.|+++++++.|.++.+|.-..+  ++..++.+|...|.+++ ++++.+|++++.|..+=+|.+..   -.|
T Consensus        63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence            4789999999999999999999999975543  56788999999999999 99999999999999999999863   368


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      ...+..|+..|
T Consensus       143 ~aVL~~HtqDV  153 (312)
T KOG0645|consen  143 IAVLQEHTQDV  153 (312)
T ss_pred             Eeeeccccccc
Confidence            88899988655

>KOG0282|consensus

Probab=99.58  E-value=2.1e-15  Score=83.30  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=71.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|..++|+.+|..+.+++-|+.+++||+++|.+..++.- .....++. +|++ ..++.|+.|+.|+.||+++++.++.+
T Consensus       260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            467889999999999999999999999999999888763 45668888 8886 78899999999999999999877776


Q ss_pred             cCCCCC
Q psy13945         79 QGPTEP   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      ..|-..
T Consensus       339 d~hLg~  344 (503)
T KOG0282|consen  339 DRHLGA  344 (503)
T ss_pred             Hhhhhh
Confidence            655443

>KOG0313|consensus

Probab=99.58  E-value=2.2e-14  Score=77.64  Aligned_cols=85  Identities=26%  Similarity=0.411  Sum_probs=73.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC--c-eEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCe-E
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG--T-SLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGS-L   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~-~   74 (86)
                      ++.++.++|...++++|+.+..+++||.+++  . +...+.+|+..|.++. +|. ..+|++++.|+++++||.|.-. +
T Consensus       302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p  381 (423)
T KOG0313|consen  302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP  381 (423)
T ss_pred             ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence            3578999999999999999999999998754  2 3577889999999999 875 6678899999999999999765 8


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+.+|.+.|
T Consensus       382 lydI~~h~DKv  392 (423)
T KOG0313|consen  382 LYDIAGHNDKV  392 (423)
T ss_pred             ceeeccCCceE
Confidence            89999997765

>KOG0649|consensus

Probab=99.57  E-value=1.3e-13  Score=71.57  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=70.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |+++...|..+.++.++.|+.++-||+++++....+++|+.-+.++. ......+++|+.|+++++||.+++++++.+..
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            56777888777677777899999999999999999999999999999 77788899999999999999999999988764

>KOG0274|consensus

Probab=99.57  E-value=1.1e-13  Score=79.15  Aligned_cols=84  Identities=27%  Similarity=0.414  Sum_probs=69.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      |.++.+...+..+++|+.|.++++||..++++...+.+|...+.++. .....+++|+.|.+|++|++.++.++..+.+|
T Consensus       252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h  330 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGH  330 (537)
T ss_pred             ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE-ccCceEeeccCCceEEEEeccCcceEEEeccc
Confidence            56777776678899999999999999999999999999988887774 34556667888999999999989999988888


Q ss_pred             CCCCC
Q psy13945         82 TEPVH   86 (86)
Q Consensus        82 ~~~v~   86 (86)
                      .+.|+
T Consensus       331 ~~~V~  335 (537)
T KOG0274|consen  331 TGPVN  335 (537)
T ss_pred             cccEE
Confidence            87764

>KOG0302|consensus

Probab=99.57  E-value=3.2e-14  Score=77.07  Aligned_cols=84  Identities=20%  Similarity=0.336  Sum_probs=68.8

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC---CeE
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND---GSL   74 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~   74 (86)
                      |..++|+|.. ..|++++.|+.|++||++.+.  .....++|..-|..+. +....++++|+.++++++||+|+   +.+
T Consensus       260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence            5678899854 678999999999999998763  2334478989999888 77767899999999999999985   567


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..|+.|..+|
T Consensus       340 VA~fk~Hk~pI  350 (440)
T KOG0302|consen  340 VATFKYHKAPI  350 (440)
T ss_pred             ceeEEeccCCe
Confidence            88888888776

>KOG0645|consensus

Probab=99.57  E-value=2.5e-13  Score=71.07  Aligned_cols=83  Identities=19%  Similarity=0.407  Sum_probs=72.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC-CC--eE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN-DG--SL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~--~~   74 (86)
                      |.|++|+++|+++++.++|+.+.+|.+..+   ++...+..|.+-|..+. +|...+|++++.|.+|++|.-. ..  .+
T Consensus       108 VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c  187 (312)
T KOG0645|consen  108 VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC  187 (312)
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE
Confidence            679999999999999999999999998744   34677888999999999 9999999999999999999866 32  68


Q ss_pred             EEeecCCCCC
Q psy13945         75 KCNIQGPTEP   84 (86)
Q Consensus        75 ~~~~~~~~~~   84 (86)
                      .+++.+|.+.
T Consensus       188 ~~tl~g~~~T  197 (312)
T KOG0645|consen  188 VQTLDGHENT  197 (312)
T ss_pred             EEEecCccce
Confidence            8999988754

>KOG2394|consensus

Probab=99.57  E-value=1.7e-14  Score=81.02  Aligned_cols=85  Identities=22%  Similarity=0.342  Sum_probs=77.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|...+|+|||+++++.+.|+.++|+|..+.+++..++..-+...|+. +||+.++++|+.|-.+.+|.+..++.+..-.
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence            367889999999999999999999999998888888777778889999 9999999999999999999999999988888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus       372 GHkSWV  377 (636)
T KOG2394|consen  372 GHKSWV  377 (636)
T ss_pred             ccccce
Confidence            898776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.56  E-value=3.1e-13  Score=80.32  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|++ ++..+++++.|+++++||+.+++.+..+.+|...|.++. +| ++..+++++.|+.+++||++++.++..+
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            56788876 478899999999999999998888888899999999999 75 7889999999999999999988887776


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       615 ~~~  617 (793)
T PLN00181        615 KTK  617 (793)
T ss_pred             ecC
Confidence            543

>KOG0295|consensus

Probab=99.55  E-value=3.5e-14  Score=76.51  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=78.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.++.|-|.|.++++.+.|.++++|+..++.+..++.+|.+.|..++ ..|+..+++++.|.++++|-..++.|...++.
T Consensus       196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~  275 (406)
T KOG0295|consen  196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE  275 (406)
T ss_pred             eeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc
Confidence            67899999999999999999999999999999999999999999999 99999999999999999999999988888888


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |+-.|
T Consensus       276 hEh~v  280 (406)
T KOG0295|consen  276 HEHPV  280 (406)
T ss_pred             cccce
Confidence            86543

>KOG0282|consensus

Probab=99.55  E-value=5.6e-15  Score=81.63  Aligned_cols=78  Identities=19%  Similarity=0.399  Sum_probs=71.8

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      |+++.|.| .+.++++++.|+.|++|++.. +.++.++.+|..+|..+. +.++..+++++.|..+++||.++|+++..|
T Consensus       217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f  296 (503)
T KOG0282|consen  217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF  296 (503)
T ss_pred             cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence            56778888 889999999999999999875 888999999999999999 899999999999999999999999999887


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       297 ~  297 (503)
T KOG0282|consen  297 H  297 (503)
T ss_pred             e
Confidence            4

>KOG0264|consensus

Probab=99.55  E-value=1.8e-13  Score=75.08  Aligned_cols=85  Identities=29%  Similarity=0.502  Sum_probs=69.2

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCc-eEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCC-C---
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGT-SLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTND-G---   72 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~-~---   72 (86)
                      +|.|++|+| ++..|++|+.|++|.+||+++.+ .+..+.+|...|..+. +|+ ...+++++.|+.+.+||+.. +   
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            478999999 55778899999999999998754 5788999999999999 886 66778999999999999853 1   


Q ss_pred             ----------eEEEeecCCCCCC
Q psy13945         73 ----------SLKCNIQGPTEPV   85 (86)
Q Consensus        73 ----------~~~~~~~~~~~~v   85 (86)
                                +.++.-.||...|
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV  376 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKV  376 (422)
T ss_pred             ChhhhccCCcceeEEecCccccc
Confidence                      1345556777665

>KOG1446|consensus

Probab=99.55  E-value=3.9e-13  Score=71.20  Aligned_cols=79  Identities=25%  Similarity=0.400  Sum_probs=65.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce--------------------------------------------EEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS--------------------------------------------LAS   36 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------~~~   36 (86)
                      .|+++.|+++|.++++.+.|-.+++||...++.                                            +.-
T Consensus        16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY   95 (311)
T KOG1446|consen   16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY   95 (311)
T ss_pred             ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence            378999999999999988888999998765532                                            222


Q ss_pred             EeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         37 WKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        37 ~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.||...|.++. +|-+..+++++.|.+|++||++..+|...+.
T Consensus        96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen   96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence            668888999999 9999999999999999999999777766554

>KOG0294|consensus

Probab=99.55  E-value=1.6e-13  Score=73.02  Aligned_cols=84  Identities=26%  Similarity=0.375  Sum_probs=73.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC--CeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD--GTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|++++.  +++++++|+.|.+|++||......+..+..|.+.|+++. .+..  .++++++.|+.|.+|+...=.++..
T Consensus        45 sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s  122 (362)
T KOG0294|consen   45 SITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS  122 (362)
T ss_pred             ceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence            3566766  589999999999999999999999999999999999998 5443  4899999999999999988889999


Q ss_pred             ecCCCCCCC
Q psy13945         78 IQGPTEPVH   86 (86)
Q Consensus        78 ~~~~~~~v~   86 (86)
                      +++|...|+
T Consensus       123 lK~H~~~Vt  131 (362)
T KOG0294|consen  123 LKAHKGQVT  131 (362)
T ss_pred             ecccccccc
Confidence            999988764

>KOG0310|consensus

Probab=99.54  E-value=2.6e-14  Score=79.04  Aligned_cols=85  Identities=21%  Similarity=0.416  Sum_probs=74.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.++.|..||+++++|+..|.++++|..+...+..+.+|+.++..+. +| ++..+++|++|..+++||+.+......+.
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            57889999999999999999999999776666778889999999998 66 56677899999999999999888766889


Q ss_pred             CCCCCCC
Q psy13945         80 GPTEPVH   86 (86)
Q Consensus        80 ~~~~~v~   86 (86)
                      +|+++|+
T Consensus       151 ~htDYVR  157 (487)
T KOG0310|consen  151 GHTDYVR  157 (487)
T ss_pred             CCcceeE
Confidence            9999875

>KOG0274|consensus

Probab=99.54  E-value=6.7e-14  Score=79.96  Aligned_cols=82  Identities=30%  Similarity=0.562  Sum_probs=73.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~   78 (86)
                      +|.++..+  +..+++|+.|++|.+||..+++++..+.+|...|+++. ... ..+++|+.|.+|++||+++. +|+.++
T Consensus       333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  333 PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence            46777775  88999999999999999999999999999999999986 444 88899999999999999999 999999


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|.+.|
T Consensus       410 ~~h~~~v  416 (537)
T KOG0274|consen  410 QGHTSLV  416 (537)
T ss_pred             cCCcccc
Confidence            9998755

>KOG0264|consensus

Probab=99.54  E-value=4.7e-14  Score=77.24  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC-CeEE
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND-GSLK   75 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~-~~~~   75 (86)
                      |..++|++ +..+|++.+.|+.+.+||.+  +.+......+|...+.|++ .| ++..+++++.|+++.+||+|+ ..++
T Consensus       230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l  309 (422)
T KOG0264|consen  230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL  309 (422)
T ss_pred             eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence            56788887 44678899999999999998  4555677788999999999 66 577788999999999999997 4688


Q ss_pred             EeecCCCCCC
Q psy13945         76 CNIQGPTEPV   85 (86)
Q Consensus        76 ~~~~~~~~~v   85 (86)
                      ..+.+|.+.|
T Consensus       310 h~~e~H~dev  319 (422)
T KOG0264|consen  310 HTFEGHEDEV  319 (422)
T ss_pred             eeccCCCcce
Confidence            8999998765

>KOG0647|consensus

Probab=99.54  E-value=1.2e-13  Score=73.17  Aligned_cols=84  Identities=20%  Similarity=0.471  Sum_probs=67.7

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccC-CceE-EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRT-GTSL-ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      .|.+++|+| ...++++++.|++|++|++.. +... .....+.+++.++. +.++..+++++.|+.+++||+.+++. .
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~  107 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-S  107 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-e
Confidence            378899999 567788999999999999875 3333 33445788999999 99999999999999999999998844 4


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+..|..+|
T Consensus       108 ~v~~Hd~pv  116 (347)
T KOG0647|consen  108 QVAAHDAPV  116 (347)
T ss_pred             eeeecccce
Confidence            445676665

>KOG0306|consensus

Probab=99.54  E-value=1.6e-13  Score=79.62  Aligned_cols=84  Identities=20%  Similarity=0.362  Sum_probs=79.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.|+.+|||+++++.+=.|.++.+|=+++.+.-..+-+|.-+|.|+. +|++..+++|+.|..+++|.+.-|.|-+.+.+
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence            67999999999999999999999999999998888999999999999 99999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |.+.|
T Consensus       591 HdDSv  595 (888)
T KOG0306|consen  591 HDDSV  595 (888)
T ss_pred             ccCce
Confidence            98875

>KOG0278|consensus

Probab=99.53  E-value=9.8e-14  Score=72.19  Aligned_cols=74  Identities=24%  Similarity=0.379  Sum_probs=67.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      |.+..++|+...+++|+++..++.||..+++.+..+ ++|.++|.|+. +|++..+++|+.|++|++|+...++..
T Consensus       227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            567788999999999999999999999999999886 88999999999 999999999999999999998766543

>KOG0308|consensus

Probab=99.53  E-value=8.8e-14  Score=79.47  Aligned_cols=86  Identities=21%  Similarity=0.426  Sum_probs=74.4

Q ss_pred             CeeEEEE-CCCCCEEEEEeCCCeEEEEEccCCce----------EEEEe-CCccceEEEE-eCCCCeEEEEeCCCCEEEE
Q psy13945          1 LIRCIAV-SSSGSWIAIGQASGVLTLLDLRTGTS----------LASWK-GHEGEILQLV-TADDGTLISSSLDQTISAW   67 (86)
Q Consensus         1 ~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~   67 (86)
                      +|.|+++ .++..++++|+.|+.|.+||+.++..          ...+. ++...|++++ .+.+..+++|+..+-+++|
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW  198 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence            4789999 88899999999999999999987632          11222 6778999999 8999999999999999999


Q ss_pred             eCCCCeEEEeecCCCCCCC
Q psy13945         68 HTNDGSLKCNIQGPTEPVH   86 (86)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v~   86 (86)
                      |.++++.+..++||++.|+
T Consensus       199 Dprt~~kimkLrGHTdNVr  217 (735)
T KOG0308|consen  199 DPRTCKKIMKLRGHTDNVR  217 (735)
T ss_pred             ccccccceeeeeccccceE
Confidence            9999999999999998874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.52  E-value=2e-12  Score=67.56  Aligned_cols=85  Identities=25%  Similarity=0.417  Sum_probs=73.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+.++.|+++++++++++.++.+.+||..+++....+..+...+.++. ++++..++++..++.+.+||++.++....+.
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  174 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT  174 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence            367899999988888888899999999988888888888888899999 8888888888889999999999888887777


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|...+
T Consensus       175 ~~~~~i  180 (289)
T cd00200         175 GHTGEV  180 (289)
T ss_pred             cCcccc
Confidence            766443

>KOG0306|consensus

Probab=99.52  E-value=5.9e-14  Score=81.29  Aligned_cols=85  Identities=14%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ||.|+..+||+.++++++.|..+++|-++-|.+-..+.+|...|.++. -|....+.+++.|+.++.||...-.+++.+.
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            789999999999999999999999999999999999999999999999 8999999999999999999998889999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       632 ~H~~ev  637 (888)
T KOG0306|consen  632 GHHSEV  637 (888)
T ss_pred             cchhee
Confidence            987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.51  E-value=1.3e-12  Score=77.78  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=69.5

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCCe-EEE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDGS-LKC   76 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~~-~~~   76 (86)
                      +|.+++|+| ++.++++++.|+.+++||+.++.....+..+ ..+.++. . +++..+++++.|+.|++||++... .+.
T Consensus       577 ~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~  655 (793)
T PLN00181        577 RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC  655 (793)
T ss_pred             CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence            478999996 7889999999999999999988887777654 5677777 4 568899999999999999998765 566


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+.+|...|
T Consensus       656 ~~~~h~~~V  664 (793)
T PLN00181        656 TMIGHSKTV  664 (793)
T ss_pred             EecCCCCCE
Confidence            777887654

>KOG0310|consensus

Probab=99.51  E-value=8.4e-13  Score=73.24  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=66.0

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCC-eEEE
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDG-SLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~-~~~~   76 (86)
                      |+..+.|+|+ +..+++|++|+.+++||+.+..++..+.+|+.-|.+.+ +|. ..++++|+.|++|++||++.. ..+.
T Consensus       112 pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~  191 (487)
T KOG0310|consen  112 PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV  191 (487)
T ss_pred             ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence            5778889985 46788999999999999999888778899999999999 765 557889999999999999876 5555


Q ss_pred             ee
Q psy13945         77 NI   78 (86)
Q Consensus        77 ~~   78 (86)
                      ++
T Consensus       192 el  193 (487)
T KOG0310|consen  192 EL  193 (487)
T ss_pred             Ee
Confidence            55

>KOG0277|consensus

Probab=99.50  E-value=5.4e-13  Score=69.47  Aligned_cols=84  Identities=23%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCC-CeEEEe
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTND-GSLKCN   77 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~-~~~~~~   77 (86)
                      |....|+| ..+++++++.|+++++||++..-....+.+|..++.+.. + .+...+++++.|+.|+.||++. ..++.+
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence            56788998 557899999999999999875433334888988999988 5 5788899999999999999987 457788


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.+|.-.|
T Consensus       230 L~gh~~AV  237 (311)
T KOG0277|consen  230 LNGHGLAV  237 (311)
T ss_pred             ecCCceEE
Confidence            88886444

>KOG0296|consensus

Probab=99.49  E-value=2.3e-12  Score=69.68  Aligned_cols=79  Identities=14%  Similarity=0.294  Sum_probs=73.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++.+++.+|+.+++++|+.|-.-.+|++.++..+..+.+|+..|.++. +.++.++++|+.++.+++|+..++.....+.
T Consensus        66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence            478899999999999999999999999999999999999999999999 8999999999999999999999887666653

>KOG0283|consensus

Probab=99.49  E-value=3.7e-13  Score=78.02  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      |..+.|+. +.+|++++.|.++++|++...+++..|. |...|+|++ +| |.++|++|+.|+.+++|++...+..
T Consensus       372 ILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv  445 (712)
T KOG0283|consen  372 ILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV  445 (712)
T ss_pred             heeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE
Confidence            56788887 5678899999999999999888888766 899999999 76 7899999999999999999776544

>KOG0772|consensus

Probab=99.48  E-value=1.3e-13  Score=77.28  Aligned_cols=80  Identities=21%  Similarity=0.301  Sum_probs=65.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce---EEEEeCCcc--ceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-Ce
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS---LASWKGHEG--EILQLV-TADDGTLISSSLDQTISAWHTND-GS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~--~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~   73 (86)
                      +++.++|++|+.+|++|..||.|.+|+.....+   ...-.+|..  .|+|+. +++++.|++.+.|.++++||+++ .+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            467899999999999999999999999754332   233356765  899999 99999999999999999999987 45


Q ss_pred             EEEeecC
Q psy13945         74 LKCNIQG   80 (86)
Q Consensus        74 ~~~~~~~   80 (86)
                      ++.+..+
T Consensus       399 pL~~~tg  405 (641)
T KOG0772|consen  399 PLNVRTG  405 (641)
T ss_pred             chhhhcC
Confidence            6665554

>KOG0640|consensus

Probab=99.48  E-value=1.9e-13  Score=73.02  Aligned_cols=79  Identities=23%  Similarity=0.362  Sum_probs=69.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE---EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA---SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|.++.|+|.|.+++.|.+..++++||+.+.++..   .-..|++.|.++. ++.+.++++++.|+.|++||--.++|+.
T Consensus       218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~  297 (430)
T KOG0640|consen  218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR  297 (430)
T ss_pred             eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence            57899999999999999999999999998876633   2345788999999 9999999999999999999998888887


Q ss_pred             eec
Q psy13945         77 NIQ   79 (86)
Q Consensus        77 ~~~   79 (86)
                      ++.
T Consensus       298 t~~  300 (430)
T KOG0640|consen  298 TIG  300 (430)
T ss_pred             HHH
Confidence            774

>KOG0283|consensus

Probab=99.48  E-value=2.4e-13  Score=78.78  Aligned_cols=84  Identities=25%  Similarity=0.436  Sum_probs=65.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC--------------------------------C-----------------
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT--------------------------------G-----------------   31 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------~-----------------   31 (86)
                      +|.++.|++||+++++|+.|+.|+||.+..                                .                 
T Consensus       269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~  348 (712)
T KOG0283|consen  269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV  348 (712)
T ss_pred             cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence            488999999999999999999999997654                                0                 


Q ss_pred             -----------ceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         32 -----------TSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        32 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                                 ++...+.+|...|..+.......|++++.|.++++|++....|+..|. |.+.|
T Consensus       349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV  412 (712)
T KOG0283|consen  349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV  412 (712)
T ss_pred             cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCee
Confidence                       011124455555655553356778899999999999999999999995 77765

>KOG0296|consensus

Probab=99.47  E-value=2.6e-12  Score=69.51  Aligned_cols=78  Identities=15%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |..+.|+|-++.+++|+.||.+.+|.+......+.+.+|+.++.+-. .|++..++++..|++|++|+..++.+++.+.
T Consensus       151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            45688999999999999999999999998888889999999999988 8999999999999999999999999888876

>KOG1407|consensus

Probab=99.47  E-value=6e-13  Score=69.47  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=71.0

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      -|+.|+|+|+++++|+.|-.+.+||++..-+...+..+..+|..+. +.+++++++++.|..|-+=+.++|..+..+.
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence            4889999999999999999999999998888888999999999999 8999999999999999999999988777664

>KOG0646|consensus

Probab=99.46  E-value=5.4e-13  Score=73.73  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=75.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC---------
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN---------   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~---------   70 (86)
                      +|.+++-+|+|.+++.|...+.+++|.+.+|..+..+.+|.+.|+++. +.++.++++++.|+.|.+|.+.         
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence            478999999999999998999999999999999999999999999999 8999999999999999999763         


Q ss_pred             CCeEEEeecCCCCCC
Q psy13945         71 DGSLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~~~~~~~v   85 (86)
                      +-+++..|.+|.-.|
T Consensus       163 ~~~p~~~f~~HtlsI  177 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSI  177 (476)
T ss_pred             CccceeeeccCccee
Confidence            235777788886554

>KOG0293|consensus

Probab=99.46  E-value=1.1e-12  Score=72.17  Aligned_cols=86  Identities=21%  Similarity=0.359  Sum_probs=74.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e---CCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T---ADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|++.+.+.|+++++..-.+..+.+||++....+.++.+|+..-+-+. .   .+...+++|+.|++|++|+..+++.+.
T Consensus       397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence            578999999999999999999999999998888888889887655554 2   345688999999999999999999999


Q ss_pred             eecCCCCCCC
Q psy13945         77 NIQGPTEPVH   86 (86)
Q Consensus        77 ~~~~~~~~v~   86 (86)
                      ++.||...|+
T Consensus       477 ~LsGHs~~vN  486 (519)
T KOG0293|consen  477 VLSGHSKTVN  486 (519)
T ss_pred             eecCCcceee
Confidence            9999987664

>KOG0318|consensus

Probab=99.46  E-value=2.4e-12  Score=72.36  Aligned_cols=85  Identities=20%  Similarity=0.275  Sum_probs=70.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE-EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~   77 (86)
                      +|++++|+||+.+|++++..+.+.+||..++++. ..+.-|..+|.+++ +|+..++++|+.|..|.+|++..- +.+..
T Consensus       489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i  568 (603)
T KOG0318|consen  489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII  568 (603)
T ss_pred             CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence            5789999999999999999999999999888773 44555899999999 999999999999999999998753 33333


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      ..+|...|
T Consensus       569 knAH~~gV  576 (603)
T KOG0318|consen  569 KNAHLGGV  576 (603)
T ss_pred             ccccccCc
Confidence            44565544

>KOG0313|consensus

Probab=99.45  E-value=2.3e-12  Score=70.00  Aligned_cols=83  Identities=18%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC---eEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG---SLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~~~   76 (86)
                      +|.++.|++ ...+++++.|++|+.||+.++....++.+ +....++. .+...++++|+.|..+++||.+++   ...+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~  339 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ  339 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence            578899988 67789999999999999999888777665 46678999 999999999999999999999864   4667


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .|.+|++.|
T Consensus       340 s~~gH~nwV  348 (423)
T KOG0313|consen  340 SLIGHKNWV  348 (423)
T ss_pred             eeecchhhh
Confidence            889998765

>KOG0267|consensus

Probab=99.45  E-value=4.2e-14  Score=81.50  Aligned_cols=85  Identities=21%  Similarity=0.295  Sum_probs=78.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.++.|+++..++++|..+|+|++||+...+...++.+|...+.+++ +|.+.++++++.|..+.+||++..-|.+.+.
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence            578999999999999999999999999999999999999999999999 9999999999999999999999888999888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       152 s~~~vv  157 (825)
T KOG0267|consen  152 SHTRVV  157 (825)
T ss_pred             CCccee
Confidence            887654

>KOG1034|consensus

Probab=99.45  E-value=1.3e-12  Score=70.03  Aligned_cols=70  Identities=20%  Similarity=0.404  Sum_probs=62.2

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEE---eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASW---KGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      .|+.+.++|+. +++++++.|..+++|++++..++..+   .+|...|.++. ++++..+++++.|+++++|++.
T Consensus       137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            36678889976 68999999999999999999886555   56889999999 9999999999999999999987

>KOG0639|consensus

Probab=99.45  E-value=1.1e-13  Score=77.69  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=68.2

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      ..++.+||.+..++...||.|.|||+.+...+..+.+|...+.|+. ++++..+.+|+.|++++.||+++++.++
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence            3578899999999999999999999999999999999999999999 9999999999999999999999876543

>KOG1009|consensus

Probab=99.45  E-value=2.3e-12  Score=70.41  Aligned_cols=86  Identities=23%  Similarity=0.402  Sum_probs=74.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc--------C--------CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR--------T--------GTSLASWKGHEGEILQLV-TADDGTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~--------~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~   63 (86)
                      +|+++.|+|+|.++++|++++.+.+|-..        +        ..+...+.+|...++.++ ++++..+++++.|..
T Consensus        67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns  146 (434)
T KOG1009|consen   67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS  146 (434)
T ss_pred             eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence            47899999999999999999999999754        2        112345667888999999 999999999999999


Q ss_pred             EEEEeCCCCeEEEeecCCCCCCC
Q psy13945         64 ISAWHTNDGSLKCNIQGPTEPVH   86 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~~~~~~v~   86 (86)
                      +++||...|.....+.+|...|+
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEEEEeccceeEeeccccccccc
Confidence            99999999999999999987664

>KOG0300|consensus

Probab=99.45  E-value=3.7e-13  Score=72.24  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=75.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~   79 (86)
                      |.+..|-..|..+++++.|.+..+||+++++++..+.+|........ +|...++++.+.|.+.++||++.. ..+..|.
T Consensus       275 V~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  275 VSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             eEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            45667777889999999999999999999999999999999999888 999999999999999999999853 5667899


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|++.|
T Consensus       355 GHtdtV  360 (481)
T KOG0300|consen  355 GHTDTV  360 (481)
T ss_pred             ccccce
Confidence            998776

>KOG0269|consensus

Probab=99.43  E-value=4.7e-13  Score=77.71  Aligned_cols=71  Identities=28%  Similarity=0.397  Sum_probs=62.6

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      |..+.|+| .+..|+++.+.|.+.+||++. ......+.+|.++|.++. +|+..++++|+.|+.+++|+..+.
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence            67899998 567899999999999999874 445677889999999999 999999999999999999998754

>KOG0294|consensus

Probab=99.42  E-value=3.9e-12  Score=67.89  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             CeeEEEECCCCC--EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGS--WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .|+++.|.++..  .+++++.||.+.+|+...-+....+++|.+.|+.++ +|.+.+-++.+.|+.+++|++-.|+.-
T Consensus        85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a  162 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA  162 (362)
T ss_pred             ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence            378899988764  789999999999999998888999999999999999 999999999999999999999776533

>KOG0267|consensus

Probab=99.41  E-value=8.2e-13  Score=76.40  Aligned_cols=84  Identities=21%  Similarity=0.343  Sum_probs=76.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +..+.|+|-+.+.+.|+.|+-+.+||.+...+...+.+|...+..+. .|++.+++.++.|..+++||...|+....|..
T Consensus       115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~  194 (825)
T KOG0267|consen  115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS  194 (825)
T ss_pred             cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence            56788999999999999999999999998888888888888888888 99999999999999999999999999999988


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |...+
T Consensus       195 ~e~~v  199 (825)
T KOG0267|consen  195 HEGKV  199 (825)
T ss_pred             ccccc
Confidence            87665

>KOG0302|consensus

Probab=99.41  E-value=4.3e-12  Score=69.09  Aligned_cols=69  Identities=26%  Similarity=0.498  Sum_probs=60.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEcc---CCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLR---TGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~   70 (86)
                      |+.+.|+..-.+|++|+++|++++||++   .++++..++.|+.+|+++. +|. ...++.++.|.+|.+||+.
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            6788999888899999999999999987   4567789999999999999 875 6677889999999999985

>KOG0277|consensus

Probab=99.41  E-value=8.5e-12  Score=65.13  Aligned_cols=82  Identities=17%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      |.++.|++ .++.+++++-|++|++|+......+.++.+|...|+... +|. ...+++++.|+++++||++..-....+
T Consensus       107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i  186 (311)
T KOG0277|consen  107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI  186 (311)
T ss_pred             eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence            56778887 445688889999999999888888999999999999999 875 778899999999999999864333336


Q ss_pred             cCCCC
Q psy13945         79 QGPTE   83 (86)
Q Consensus        79 ~~~~~   83 (86)
                      ..|..
T Consensus       187 ~ah~~  191 (311)
T KOG0277|consen  187 EAHNS  191 (311)
T ss_pred             Eeccc
Confidence            66653

>KOG3914|consensus

Probab=99.41  E-value=1.9e-12  Score=70.46  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=64.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..++++||++.|+++++|..|++-....--.+..+ .||+..|..+.-.++..+++++.|+++++||+++|+++..+.
T Consensus       154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            468999999999999999999999887654445444 679999988874455668999999999999999999886653

>KOG0303|consensus

Probab=99.40  E-value=4.6e-12  Score=69.35  Aligned_cols=81  Identities=10%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |.-+.|+|.. +.+++++.|.++.+|+..+++.+.++. |...|+++. +.++..+++.+.|..|++||.+.++.+..-.
T Consensus       134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            4568899865 567788889999999999999988877 999999999 8999999999999999999999999998887


Q ss_pred             CCCC
Q psy13945         80 GPTE   83 (86)
Q Consensus        80 ~~~~   83 (86)
                      +|.+
T Consensus       213 ~heG  216 (472)
T KOG0303|consen  213 AHEG  216 (472)
T ss_pred             cccC
Confidence            7754

>KOG0289|consensus

Probab=99.40  E-value=1.2e-11  Score=68.33  Aligned_cols=86  Identities=15%  Similarity=0.306  Sum_probs=75.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|+.+..+|.|.++++++++++.-+.|.+++..+......  .-.+.+.. +||+..|.+|..|+.+++||+........
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~  384 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK  384 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence            4788899999999999999999999999998887665542  23577888 99999999999999999999999888899


Q ss_pred             ecCCCCCCC
Q psy13945         78 IQGPTEPVH   86 (86)
Q Consensus        78 ~~~~~~~v~   86 (86)
                      |-+|+++|.
T Consensus       385 Fpght~~vk  393 (506)
T KOG0289|consen  385 FPGHTGPVK  393 (506)
T ss_pred             CCCCCCcee
Confidence            999988763

>KOG0644|consensus

Probab=99.39  E-value=1.6e-13  Score=80.58  Aligned_cols=85  Identities=26%  Similarity=0.536  Sum_probs=80.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.|+.|...|+++++|++|..++||...+..+...+.+|.+.+..++ +.+..++++++.|..|++|.+.++.++.++.
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr  271 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR  271 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence            478999999999999999999999999999999999999999999999 8888899999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|++.|
T Consensus       272 ghtgav  277 (1113)
T KOG0644|consen  272 GHTGAV  277 (1113)
T ss_pred             ccccce
Confidence            999776

>KOG1446|consensus

Probab=99.38  E-value=7e-11  Score=62.87  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=67.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc--ceE-EEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG--EIL-QLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~v~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      .+.+.|+|||..++.+...+.+++.|.-.|.....+..+..  .+. ... .|++..+++++.|++|.+|+++++..+..
T Consensus       190 w~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  190 WTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             eeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence            36789999999999999999999999999998888876543  222 223 59999999999999999999999999988


Q ss_pred             ecC
Q psy13945         78 IQG   80 (86)
Q Consensus        78 ~~~   80 (86)
                      +++
T Consensus       270 ~~~  272 (311)
T KOG1446|consen  270 LRG  272 (311)
T ss_pred             ecC
Confidence            877

>KOG0299|consensus

Probab=99.38  E-value=4.8e-12  Score=70.02  Aligned_cols=85  Identities=22%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE----EE-------------E-eCCccceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL----AS-------------W-KGHEGEILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~-------------~-~~~~~~v~~~~-~~~~~~~~~~~~~   61 (86)
                      ++.++++++|+.+.++++.+++|.=|++.+++..    .+             - ++|...+.+++ ++++.++++++.|
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d  223 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD  223 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence            4789999999999999999999999998766521    11             1 25677888999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         62 QTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      ..+.+|+.++.++++.+.+|++.|
T Consensus       224 ~~v~Iw~~~t~ehv~~~~ghr~~V  247 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVFKGHRGAV  247 (479)
T ss_pred             ceEEEecCcccchhhcccccccce
Confidence            999999999999999999999876

>KOG0639|consensus

Probab=99.37  E-value=3.6e-12  Score=71.78  Aligned_cols=85  Identities=21%  Similarity=0.330  Sum_probs=70.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE--EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA--SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.++.+.|||+.+++|+.-.++.+||+.......  .+.......+.++ +|+....+++..|+.|.+||+++...+..
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq  546 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ  546 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence            46788999999999999999999999987554422  2222234556778 89999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      |.+|++.+
T Consensus       547 fqGhtDGa  554 (705)
T KOG0639|consen  547 FQGHTDGA  554 (705)
T ss_pred             ccCCCCCc
Confidence            99998764

>KOG1274|consensus

Probab=99.37  E-value=8.6e-12  Score=73.62  Aligned_cols=79  Identities=33%  Similarity=0.492  Sum_probs=73.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |+.+++++-+|.+++.|++|..|++.+..+......+++|+.+|.++. +|.+..+++...||.+.+|++.++.+...+.
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            578999999999999999999999999999888899999999999999 9999999999999999999999887666554

>KOG0640|consensus

Probab=99.37  E-value=4.6e-12  Score=67.85  Aligned_cols=81  Identities=25%  Similarity=0.385  Sum_probs=69.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCcc-ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEG-EILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~-~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      .|+++.+++.+++.++++.||.|++||--...++.++. +|.+ .|.+.. ..++..+++.+.|..+++|.+.+++++..
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE  342 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence            47899999999999999999999999977777776664 4654 555555 68999999999999999999999999998


Q ss_pred             ecCC
Q psy13945         78 IQGP   81 (86)
Q Consensus        78 ~~~~   81 (86)
                      +.|.
T Consensus       343 YtGA  346 (430)
T KOG0640|consen  343 YTGA  346 (430)
T ss_pred             EecC
Confidence            8653

>KOG0303|consensus

Probab=99.36  E-value=3.8e-12  Score=69.67  Aligned_cols=84  Identities=17%  Similarity=0.265  Sum_probs=70.2

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCC-------ceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~   70 (86)
                      +|..++|+| +.+.|++|++|.++.+|++...       +....+.+|..+|-.++ +|. .+.+++++.|+++.+|+..
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            466788998 5678999999999999998743       33677889999999999 886 6677899999999999999


Q ss_pred             CCeEEEeecCCCCCC
Q psy13945         71 DGSLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~~~~~~~v   85 (86)
                      +++.+-++. |.+.|
T Consensus       163 tgeali~l~-hpd~i  176 (472)
T KOG0303|consen  163 TGEALITLD-HPDMV  176 (472)
T ss_pred             CCceeeecC-CCCeE
Confidence            999887776 76654

>KOG0305|consensus

Probab=99.36  E-value=9.6e-12  Score=70.17  Aligned_cols=85  Identities=24%  Similarity=0.405  Sum_probs=68.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE------------------------------------------EEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA------------------------------------------SWK   38 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------------------------------------~~~   38 (86)
                      .|+++.|+++|..|+.|..+|.+.+||..+.+.+.                                          .+.
T Consensus       219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~  298 (484)
T KOG0305|consen  219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQ  298 (484)
T ss_pred             ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhh
Confidence            37889999999999999999999999864321111                                          144


Q ss_pred             CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         39 GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        39 ~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      +|.+.|..+. ++++..+++|+.|+.+.+||.....+...+..|...|
T Consensus       299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV  346 (484)
T KOG0305|consen  299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV  346 (484)
T ss_pred             cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence            5677788888 8999999999999999999998888888888887765

>KOG1034|consensus

Probab=99.35  E-value=1.1e-11  Score=66.54  Aligned_cols=75  Identities=23%  Similarity=0.477  Sum_probs=65.9

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCeEEEeec---CCCCCC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGSLKCNIQ---GPTEPV   85 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~v   85 (86)
                      ..+++.++..|.|++.|...++....+.+|.+.|..+. .|. .+++++++.|..|++|++++..|+..|.   +|++.|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            46788888999999999999999999999999999999 876 5677899999999999999999998875   566554

>KOG0278|consensus

Probab=99.34  E-value=1.6e-12  Score=67.76  Aligned_cols=78  Identities=22%  Similarity=0.454  Sum_probs=67.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |..++|+.|.+++++|+.++.++++|+... .+...+.+|.+.|..+. ......+++...|+++++||.+++..++.+.
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            578999999999999999999999998744 34667888999999888 6677777888999999999999999888775

>KOG4283|consensus

Probab=99.34  E-value=2.3e-11  Score=64.87  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC---CCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA---DDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~---~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      |..+.|-| |.-.+.+++.|+++++||..+.++...+. ..+.|++-+ +|   ...+++.|..+.+|+++|+..|.+.+
T Consensus       104 iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            56777877 55678899999999999999888877766 467788777 65   35577888899999999999999999


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+.+|++.|
T Consensus       183 ~LsGHr~~v  191 (397)
T KOG4283|consen  183 TLSGHRDGV  191 (397)
T ss_pred             eeccccCce
Confidence            999999875

>KOG2111|consensus

Probab=99.33  E-value=8.7e-11  Score=62.86  Aligned_cols=71  Identities=23%  Similarity=0.396  Sum_probs=63.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEEEeC--CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGV-LTLLDLRTGTSLASWKG--HEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .|.|++++.+|.++++++..|+ |++||..+++.+..++.  ....+++++ +|+..+++..+..+++.++.++.
T Consensus       183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            4789999999999999999988 68999999999888764  345799999 99999999999999999998875

>KOG4283|consensus

Probab=99.32  E-value=4e-11  Score=63.98  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             EEEECC---CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCC-eEEEe
Q psy13945          4 CIAVSS---SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDG-SLKCN   77 (86)
Q Consensus         4 ~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~-~~~~~   77 (86)
                      .-+++|   .-.++++|.++-.|++.|+..+.....+.+|.+.|.++. +|...++ ++++.|+.+++||++.. -|+..
T Consensus       148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~  227 (397)
T KOG4283|consen  148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV  227 (397)
T ss_pred             hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE
Confidence            344555   246788999999999999999999999999999999999 9887765 69999999999999864 67777


Q ss_pred             ecCCC
Q psy13945         78 IQGPT   82 (86)
Q Consensus        78 ~~~~~   82 (86)
                      +..|.
T Consensus       228 lD~hn  232 (397)
T KOG4283|consen  228 LDQHN  232 (397)
T ss_pred             eeccc
Confidence            77665

>KOG0293|consensus

Probab=99.30  E-value=2.8e-11  Score=66.79  Aligned_cols=78  Identities=17%  Similarity=0.351  Sum_probs=68.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce---EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS---LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      |.-+.|+++|+++++++.|.+.-+|++.....   ..++.+|..+|..+. +|+.+.+++++.+..+.+||..+|.++..
T Consensus       227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~  306 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL  306 (519)
T ss_pred             EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence            56689999999999999999999998764433   578889999999999 99999999999999999999999887766


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       307 y~  308 (519)
T KOG0293|consen  307 YP  308 (519)
T ss_pred             cc
Confidence            53

>KOG0643|consensus

Probab=99.30  E-value=5.1e-11  Score=62.70  Aligned_cols=78  Identities=24%  Similarity=0.266  Sum_probs=69.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceE-EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++...|.|-+..|++|..+|.|..||.++++.. ..-..|...|..+. +++..++++++.|.+-++||.++.++++++.
T Consensus       150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            567889999999999999999999999998664 44466888999999 9999999999999999999999988887765

>KOG0269|consensus

Probab=99.30  E-value=9.8e-12  Score=72.46  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=72.4

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC-CeEEE
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND-GSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~   76 (86)
                      .+++++|++- -.++++|+.|++++.||++..+...++.+..+.|..+. +| .+..|+++...|.+.+||+|. .++..
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~  214 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK  214 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence            3678999874 46789999999999999998888888888888999999 76 477889999999999999986 56777


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+.+|.+.|
T Consensus       215 k~~AH~GpV  223 (839)
T KOG0269|consen  215 KLTAHNGPV  223 (839)
T ss_pred             HhhcccCce
Confidence            788887765

>KOG0771|consensus

Probab=99.30  E-value=1.1e-11  Score=67.76  Aligned_cols=76  Identities=22%  Similarity=0.349  Sum_probs=67.4

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+++|+.+|..+++++.||++++|+.+....+.....|...|..+. +|++..+++-+.| ..++|+.+++.++....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            3689999999999999999999999888887777788999999999 9999999999999 99999999986555443

>KOG0641|consensus

Probab=99.30  E-value=5.9e-11  Score=61.50  Aligned_cols=78  Identities=14%  Similarity=0.273  Sum_probs=65.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEEEeC--C-----ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKG--H-----EGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         9 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~-----~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      =++..+++|+.|.++++||++......++..  |     ...|.++. .|.+++++++-.|....++|++.+++++.+..
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p  271 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP  271 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC
Confidence            3677899999999999999987766655432  1     24677888 89999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         81 PTEPVH   86 (86)
Q Consensus        81 ~~~~v~   86 (86)
                      |+..|+
T Consensus       272 hsadir  277 (350)
T KOG0641|consen  272 HSADIR  277 (350)
T ss_pred             Ccccee
Confidence            987764

>KOG0646|consensus

Probab=99.29  E-value=2.5e-11  Score=67.34  Aligned_cols=79  Identities=23%  Similarity=0.296  Sum_probs=66.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC----------------ceEEEEeCCcc--ceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG----------------TSLASWKGHEG--EILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~--~v~~~~-~~~~~~~~~~~~~   61 (86)
                      ++.+++..|.++.++.|..+|.+.+.++...                .....+.+|..  .|+|++ +-|+..+++|+.|
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            4679999999999999999999998876422                22455677777  999999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeec
Q psy13945         62 QTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~   79 (86)
                      +.+++||+...++++++.
T Consensus       299 g~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  299 GKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCEEEEecchHHHHHHHh
Confidence            999999998888777665

>KOG0305|consensus

Probab=99.29  E-value=5.1e-11  Score=67.35  Aligned_cols=78  Identities=21%  Similarity=0.300  Sum_probs=67.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEe--CCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSS--LDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~   77 (86)
                      |..+.|++|++++++|+.|..+.+||.........+..|...|..++ +|- ...|++|+  .|+.|++|+..++..+..
T Consensus       304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            67899999999999999999999999977778888899999999999 774 66677665  578999999999887776


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       384 vd  385 (484)
T KOG0305|consen  384 VD  385 (484)
T ss_pred             cc
Confidence            54

>KOG1445|consensus

Probab=99.28  E-value=3.6e-12  Score=73.58  Aligned_cols=84  Identities=20%  Similarity=0.304  Sum_probs=72.5

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCC-------ceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |+.+.|.| |.+.++.+.+|+.|++|.+..+       +....+.+|..+|+++. +| ....+++++.|.+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            67888988 7788999999999999997632       33567889999999999 76 577889999999999999999


Q ss_pred             CeEEEeecCCCCCC
Q psy13945         72 GSLKCNIQGPTEPV   85 (86)
Q Consensus        72 ~~~~~~~~~~~~~v   85 (86)
                      .+....+.+|++.|
T Consensus       710 ~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQI  723 (1012)
T ss_pred             hhhhheeccCcCce
Confidence            98888899998876

>KOG0973|consensus

Probab=99.28  E-value=6.1e-11  Score=70.79  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |..+.|+|++.++++++.|.+|.+|+..+.+.+..+.+|...|..+. .|-+.++++-+.|+++++|+..+
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d  202 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD  202 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence            67899999999999999999999999999988999999999999999 99999999999999999999655

>KOG0288|consensus

Probab=99.28  E-value=2.6e-12  Score=70.45  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=68.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|+.+.|.+++..+++++.|+.+++|+........++.+|+.+|.++. ......+++++.|.+++.||+....|..+.
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~  299 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV  299 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence            478899999999999999999999999999999999999999999998 655555899999999999999877666543

>KOG0288|consensus

Probab=99.26  E-value=4.5e-11  Score=65.74  Aligned_cols=66  Identities=21%  Similarity=0.362  Sum_probs=59.1

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc--ceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG--EILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +.+.|+|++.++++|+.+|.|++|++.++++...+.....  .|.++. .|.|..+++++.+..+.+|.
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            5678999999999999999999999999999887776544  599999 99999999999999999983

>KOG0322|consensus

Probab=99.26  E-value=1.8e-11  Score=64.23  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=63.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      |..+.+.||+..+++++.|+.+++|..++..++..++-|...|.+++ +|+...++.++.|.+|.+|++
T Consensus       254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            45678899999999999999999999999999999999999999999 999999999999999999985

>KOG1408|consensus

Probab=99.25  E-value=1e-11  Score=72.47  Aligned_cols=84  Identities=29%  Similarity=0.386  Sum_probs=73.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e-CC--CCeEEEEeCCCCEEEEeCCC-CeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T-AD--DGTLISSSLDQTISAWHTND-GSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~--~~~~~~~~~~~~i~~~~~~~-~~~~~   76 (86)
                      +.+++.+|+|+.+++|++.|.+++|++...+....+.+|...|.|+. + |.  ..++++++.|..|.++|... ...++
T Consensus       462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q  541 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ  541 (1080)
T ss_pred             eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh
Confidence            57899999999999999999999999998888888999999999998 4 53  55778999999999999864 56778


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      ++.+|++.|
T Consensus       542 tld~HSssI  550 (1080)
T KOG1408|consen  542 TLDGHSSSI  550 (1080)
T ss_pred             hhcccccce
Confidence            888998766

>KOG0301|consensus

Probab=99.25  E-value=5e-11  Score=68.93  Aligned_cols=81  Identities=27%  Similarity=0.402  Sum_probs=66.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +|.+++.-|++ .+++|+.|.+|++|.-  ++.+.++.+|..-|..+.-.+...+++++.|+.|+.|++ +|+++..+.+
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~g  217 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHG  217 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeec
Confidence            35667777776 7889999999999964  677888999999888887445567789999999999998 7888888888


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |++.|
T Consensus       218 htn~v  222 (745)
T KOG0301|consen  218 HTNFV  222 (745)
T ss_pred             cceEE
Confidence            88654

>KOG1408|consensus

Probab=99.23  E-value=2.3e-10  Score=67.16  Aligned_cols=84  Identities=21%  Similarity=0.390  Sum_probs=74.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC---CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG---HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +..++..|...++++++.|..|++|++..++....|++   +.+....+. .|.+.++++.+.|.++.++|+.+++|+..
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            45778889999999999999999999999999888876   334455666 89999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.||.+.|
T Consensus       679 m~GHsE~V  686 (1080)
T KOG1408|consen  679 MTGHSEAV  686 (1080)
T ss_pred             hcCcchhe
Confidence            99998876

>KOG1310|consensus

Probab=99.23  E-value=7.5e-11  Score=67.26  Aligned_cols=70  Identities=20%  Similarity=0.348  Sum_probs=61.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |.|+.|+.||.++++|++|..+.|||....+.+..+ .+|...|+++. -|  +...+++|..|..|+++|+..
T Consensus        53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            679999999999999999999999998877776655 57999999998 55  467888999999999999873

>KOG1007|consensus

Probab=99.22  E-value=4.1e-11  Score=63.69  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             EEEECC--CCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCC-CeEEEe
Q psy13945          4 CIAVSS--SGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TADDG-TLISSSLDQTISAWHTND-GSLKCN   77 (86)
Q Consensus         4 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~   77 (86)
                      +-+|+|  |++.+++.+ ++++..||.++.+....+ .+|.+.|..+. .|+.+ .+++++.|+.+++||.+. ..+++.
T Consensus       175 sg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  175 SGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             ccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            346777  677766654 889999999988776655 46888999999 88855 567999999999999984 678888


Q ss_pred             ecCCCC
Q psy13945         78 IQGPTE   83 (86)
Q Consensus        78 ~~~~~~   83 (86)
                      +.+|+-
T Consensus       254 l~~HsH  259 (370)
T KOG1007|consen  254 LPGHSH  259 (370)
T ss_pred             cCCCce
Confidence            888864

>KOG1407|consensus

Probab=99.21  E-value=1.7e-10  Score=60.61  Aligned_cols=84  Identities=18%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.-++|+.++.+++.....|.+.+......+++..+.+|.....|+. .|+++.+++|+.|..+.+||+..-.|.+.+.-
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR  229 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR  229 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc
Confidence            35678888888888877789999999888899999999999999999 99999999999999999999987777666655


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      +.-+|
T Consensus       230 ldwpV  234 (313)
T KOG1407|consen  230 LDWPV  234 (313)
T ss_pred             ccCce
Confidence            54443

>KOG0641|consensus

Probab=99.21  E-value=8.9e-10  Score=57.25  Aligned_cols=71  Identities=24%  Similarity=0.361  Sum_probs=66.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +|..++..|.|+++++|..|..-.+||++.+..++.+-.|...|.++. +|....+++++.|..|++-|+..
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            467899999999999999999999999999999999999999999999 99999999999999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=1.9e-09  Score=55.15  Aligned_cols=73  Identities=18%  Similarity=0.376  Sum_probs=56.5

Q ss_pred             eeEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC------CCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL------DQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~------~~~i~~~~~~~   71 (86)
                      +..+.|+|+|++++.++.   .|.+.+||..+.+.+.....  ..+..+. +|+++.++++..      |..+++|++. 
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-  179 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-  179 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-
Confidence            568999999999998764   46799999998777766543  3367888 999999998764      6788999984 


Q ss_pred             CeEEEe
Q psy13945         72 GSLKCN   77 (86)
Q Consensus        72 ~~~~~~   77 (86)
                      |+.+..
T Consensus       180 G~~l~~  185 (194)
T PF08662_consen  180 GRLLYK  185 (194)
T ss_pred             CeEeEe
Confidence            555543

>KOG1539|consensus

Probab=99.21  E-value=3.9e-10  Score=66.54  Aligned_cols=67  Identities=21%  Similarity=0.355  Sum_probs=58.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC-CCEEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD-QTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~-~~i~~~~   68 (86)
                      .|+.++|||||+.+++++.|++|++||+.++..+-.+.- ..+..++. +|+++.+++...| .-|.+|-
T Consensus       578 ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  578 RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            378999999999999999999999999999998877663 56678888 9999999999888 5789995

>KOG1539|consensus

Probab=99.20  E-value=3.8e-11  Score=70.60  Aligned_cols=77  Identities=26%  Similarity=0.391  Sum_probs=67.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.++.++.....++.+.++..|+++|..+.+....+.+|..+++.+. +|+++|+++++.|++|++||+-++.++-.+
T Consensus       537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence            45566666777788888999999999999999999999999999999 999999999999999999999988766443

>KOG2110|consensus

Probab=99.20  E-value=1.1e-09  Score=59.65  Aligned_cols=71  Identities=20%  Similarity=0.342  Sum_probs=61.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEEEeCCc--cceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGV-LTLLDLRTGTSLASWKGHE--GEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~--~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ++.+++|+++|.+++++++.|+ |+|+.+.++..+..++...  -.|+++. +++.+++.+.+...+|.++.+..
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            4679999999999999999987 6899999999988887533  4678888 89999999999999999998764

>KOG1036|consensus

Probab=99.19  E-value=6.6e-10  Score=59.28  Aligned_cols=74  Identities=26%  Similarity=0.298  Sum_probs=61.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      |+.+++|.+ ...+++|+.|+.|+.+|+.+++... +..|...+.++. .+....+++|++|++|++||.++.....
T Consensus        56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~  130 (323)
T KOG1036|consen   56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG  130 (323)
T ss_pred             ceeeeeccC-CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc
Confidence            577888887 4568899999999999998877643 355889999999 8889999999999999999998643333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.19  E-value=3.2e-10  Score=43.59  Aligned_cols=37  Identities=30%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945         32 TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus        32 ~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      ++...+.+|...|.++. +|++..+++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46778899999999999 99999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2445|consensus

Probab=99.19  E-value=6.8e-10  Score=59.49  Aligned_cols=68  Identities=22%  Similarity=0.462  Sum_probs=59.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC----CceEEEEeCCccceEEEE--eCC-CCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT----GTSLASWKGHEGEILQLV--TAD-DGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~--~~~-~~~~~~~~~~~~i~~~~~   69 (86)
                      |+++.|.+.|+.+++++.|+++.|||...    -.....++.|.+.|..+.  +|+ |+.+++++.|+++.+|.-
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            78999999999999999999999999642    234567889999999998  565 899999999999999974

>KOG2048|consensus

Probab=99.18  E-value=3e-10  Score=65.61  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-----eC---CccceEEEEeCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-----KG---HEGEILQLVTADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~---~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      .|.+++|++++..++.|+.||.|++||...+......     ..   ...-|+++.+.....+++|...|++.+||...+
T Consensus       156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence            3679999999999999999999999999887765411     11   223466666556778899999999999999999


Q ss_pred             eEEEeecCCCCCC
Q psy13945         73 SLKCNIQGPTEPV   85 (86)
Q Consensus        73 ~~~~~~~~~~~~v   85 (86)
                      ..++.+..|...|
T Consensus       236 TLiqS~~~h~adV  248 (691)
T KOG2048|consen  236 TLIQSHSCHDADV  248 (691)
T ss_pred             chhhhhhhhhcce
Confidence            8888877776544

>KOG1332|consensus

Probab=99.18  E-value=1.3e-10  Score=60.57  Aligned_cols=81  Identities=20%  Similarity=0.377  Sum_probs=64.2

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccceEEEE--eC-CCCeEEEEeCCCCEEEEeCCCCeEE--E
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGEILQLV--TA-DDGTLISSSLDQTISAWHTNDGSLK--C   76 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~~~~--~   76 (86)
                      +....-|..+++.+.|++|+++.....   ..+..+.+|.++|..+.  +| -+..+++++.|+++.+|.-.+++..  .
T Consensus        17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY   96 (299)
T ss_pred             hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence            344556889999999999999998743   45788999999999998  56 4899999999999999998887533  2


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      ....|...|
T Consensus        97 e~~~h~~SV  105 (299)
T KOG1332|consen   97 EHAAHSASV  105 (299)
T ss_pred             hhhhhcccc
Confidence            344565554

>KOG0301|consensus

Probab=99.17  E-value=1.8e-09  Score=62.74  Aligned_cols=74  Identities=24%  Similarity=0.422  Sum_probs=63.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |+++++-+++. |++.++||.|+.|++ +++.+..+.+|+..++++. .++...+++++.|+++++|+..  .+.+.+.
T Consensus       182 VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  182 VRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT  256 (745)
T ss_pred             eeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence            56778777655 677888999999997 7899999999999999999 8999999999999999999874  6666654

>KOG2394|consensus

Probab=99.16  E-value=4.6e-10  Score=63.79  Aligned_cols=47  Identities=19%  Similarity=0.408  Sum_probs=43.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV   48 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~   48 (86)
                      ..|++|+|||++|++|++|--|.||....++++..-.+|+..|..++
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va  381 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA  381 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence            46999999999999999999999999999999999899999888776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.16  E-value=3.7e-09  Score=54.11  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=58.1

Q ss_pred             CeeEEEECCCCCEEE--EEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGSWIA--IGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~~~   74 (86)
                      +|.+++|+|+|..++  .|..+..+.+||.+ .+.+..+.  ...+..+. +|++..++.++.+   +.+.+||.++.+.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            478999999998754  35566799999986 44444443  45667888 9999999988754   5699999998887


Q ss_pred             EEeec
Q psy13945         75 KCNIQ   79 (86)
Q Consensus        75 ~~~~~   79 (86)
                      +....
T Consensus       138 i~~~~  142 (194)
T PF08662_consen  138 ISTFE  142 (194)
T ss_pred             eeccc
Confidence            77664

>KOG3881|consensus

Probab=99.15  E-value=2.4e-10  Score=62.55  Aligned_cols=76  Identities=28%  Similarity=0.395  Sum_probs=68.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +++++..-|+++.+++|...+.+..+|.+.++.... +.+..+.+.++. +|..+.+++++.|..++++|+.+...+.
T Consensus       249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            478889999999999999999999999999998876 788899999999 9999999999999999999998855443

>KOG0321|consensus

Probab=99.12  E-value=3.2e-10  Score=65.37  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE--EeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS--WKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +|..+.|.|...+|++++.|.+++.||+...+....  +.+|...+.++. .+ +...|++|+.|+.+.+||++-
T Consensus       102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            467889999667899999999999999998888766  889999999998 66 577889999999999999874

>KOG1538|consensus

Probab=99.12  E-value=9.9e-10  Score=64.27  Aligned_cols=68  Identities=25%  Similarity=0.435  Sum_probs=61.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |..++|-|||..++.+. +..+.+||...|..++++++|+..|++++ +.+|..+++|+.|..+.+|...
T Consensus        15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             hheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            57899999998777665 45899999999999999999999999999 9999999999999999999864

>KOG1445|consensus

Probab=99.10  E-value=8.7e-10  Score=64.16  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=71.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-CeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND-GSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~   79 (86)
                      +.++.|+|..--|......+.+++||+.+.+.+..+.+|...|.+.. +.++..+++.+.|..|+++|.+. .++++...
T Consensus       131 vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te  210 (1012)
T KOG1445|consen  131 VECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTE  210 (1012)
T ss_pred             EEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccc
Confidence            67899999665555566689999999999999999999999999999 99999999999999999999986 57888888


Q ss_pred             CCCC
Q psy13945         80 GPTE   83 (86)
Q Consensus        80 ~~~~   83 (86)
                      +|.+
T Consensus       211 ~H~~  214 (1012)
T KOG1445|consen  211 GHGG  214 (1012)
T ss_pred             cccc
Confidence            8864

>KOG0642|consensus

Probab=99.09  E-value=4.7e-10  Score=63.73  Aligned_cols=68  Identities=26%  Similarity=0.498  Sum_probs=58.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC--------CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT--------GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      |+.+.|.+....+++++.++++.+|++..        -+.+.+|++|.++|.|+. ..++..+++|+.|+.|++|++
T Consensus       297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            34567888888899999999999999832        234788999999999999 999999999999999999954

>KOG0300|consensus

Probab=99.09  E-value=8.2e-10  Score=59.75  Aligned_cols=69  Identities=20%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGT-SLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +.++-+|..+++++++.|.+.++||....- ....|++|...|.+..+..+..+++++.|.++++||+++
T Consensus       318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             cccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence            345567888999999999999999987433 357889999999988765677789999999999999975

>KOG2919|consensus

Probab=99.08  E-value=1.2e-09  Score=59.03  Aligned_cols=81  Identities=16%  Similarity=0.274  Sum_probs=59.7

Q ss_pred             eeEEEECCCCCEEEEEeC-CCeEEEEEccCC-ceEEEEeCC----ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-Ce
Q psy13945          2 IRCIAVSSSGSWIAIGQA-SGVLTLLDLRTG-TSLASWKGH----EGEILQLV-TADDGTLISSSLDQTISAWHTND-GS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~~----~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~   73 (86)
                      |+.+.|.++|+.+++|.+ +-.|..||++.. ..+..+..|    +++|. .. .|++.++++|+.++.|++||... +.
T Consensus       253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCC
Confidence            788999999999888776 568999998753 333344333    33443 34 78999999999999999999987 66


Q ss_pred             EEEeecCCCC
Q psy13945         74 LKCNIQGPTE   83 (86)
Q Consensus        74 ~~~~~~~~~~   83 (86)
                      .+..+..|.+
T Consensus       332 ~~sv~~~~sd  341 (406)
T KOG2919|consen  332 EVSVTGNYSD  341 (406)
T ss_pred             cccccccccc
Confidence            5555554444

>KOG2110|consensus

Probab=99.08  E-value=5.8e-09  Score=56.99  Aligned_cols=77  Identities=18%  Similarity=0.318  Sum_probs=63.4

Q ss_pred             EEEECCCCCEEEE--EeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCC-EEEEeCCCCeEEEeec
Q psy13945          4 CIAVSSSGSWIAI--GQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT-ISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         4 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~   79 (86)
                      +++++.++.+++-  ....|.|.+||..+.+....+.+|++.+.+++ +++|.++++++..|+ ||++.+.+|..+..|+
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            3344445556663  23358899999999998899999999999999 999999999999997 5899999999888886


Q ss_pred             C
Q psy13945         80 G   80 (86)
Q Consensus        80 ~   80 (86)
                      .
T Consensus       214 R  214 (391)
T KOG2110|consen  214 R  214 (391)
T ss_pred             C
Confidence            3

>KOG1063|consensus

Probab=99.06  E-value=2.2e-09  Score=62.48  Aligned_cols=71  Identities=18%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce----EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS----LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      |+.++|+||++++++.++|.+..+|.......    ....+.|+--|+... +|++..+++++.|.++.+|.....
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            78999999999999999999999998753322    233567887888888 899999999999999999988765

>KOG1007|consensus

Probab=99.06  E-value=1.6e-09  Score=57.83  Aligned_cols=69  Identities=13%  Similarity=0.233  Sum_probs=57.8

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~   70 (86)
                      |..+.|+|+.+ .++++++|+.+++||.+. ..++..+.+|...|+++. .|. .+++++++.|..+.+|...
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            56788999875 578899999999999874 556778889999999999 765 5667899999999999764

>KOG1036|consensus

Probab=99.03  E-value=7.7e-09  Score=55.35  Aligned_cols=74  Identities=24%  Similarity=0.380  Sum_probs=60.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      |+.+.|+|.+..++.++.||.+++||.........+. ++.++.+..+.+...+++|+.|+.|+.+|+.++...+
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCccee
Confidence            7899999988888889999999999988765444444 6777777775567788999999999999998776444

>KOG0270|consensus

Probab=99.03  E-value=2.5e-09  Score=59.45  Aligned_cols=68  Identities=24%  Similarity=0.274  Sum_probs=58.1

Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCC
Q psy13945          4 CIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         4 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .++|+..- +.+++|+.|.+|.+||+.++++...+..|.++|.++. ++. ...+++|+.|+++.+.|.|.
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            34455443 5688999999999999999999999998999999999 764 77788999999999999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.01  E-value=4.9e-08  Score=53.29  Aligned_cols=83  Identities=33%  Similarity=0.593  Sum_probs=69.5

Q ss_pred             eeEEEECCCCCEEEEEeC-CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCCCeEEE-e
Q psy13945          2 IRCIAVSSSGSWIAIGQA-SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTNDGSLKC-N   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~-~   77 (86)
                      |..++|++++..++.++. ++.+.+|+...+.....+..|...+.++. .|++. .+++++.|+.+.+||.+.+.... .
T Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~  237 (466)
T COG2319         158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST  237 (466)
T ss_pred             EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence            567999999998888875 99999999988788888888899999999 88887 55566899999999988777777 5


Q ss_pred             ecCCCCC
Q psy13945         78 IQGPTEP   84 (86)
Q Consensus        78 ~~~~~~~   84 (86)
                      +.+|...
T Consensus       238 ~~~~~~~  244 (466)
T COG2319         238 LSGHSDS  244 (466)
T ss_pred             cCCCCcc
Confidence            7777654

>KOG1272|consensus

Probab=99.00  E-value=6.6e-10  Score=62.24  Aligned_cols=74  Identities=14%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.-+|-+-.+-.|...|+|.+|.....+++..+..|.+.|.+++ .++|.++++.+.|..+++||++.-..+.++
T Consensus       257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            44456666677899999999999888888888899999999999 999999999999999999999876544443

>KOG4547|consensus

Probab=99.00  E-value=1.5e-08  Score=57.88  Aligned_cols=83  Identities=14%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.++.++.+...|.+++.|..+..|+.........+.+.+..+.++. .|++..++++  .++|.+||+++++.+..|.+
T Consensus       105 v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftg  182 (541)
T KOG4547|consen  105 VNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTG  182 (541)
T ss_pred             ceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecC
Confidence            56677777778899999999999999999999999998888889999 9998888766  46899999999999999999


Q ss_pred             CCCCCC
Q psy13945         81 PTEPVH   86 (86)
Q Consensus        81 ~~~~v~   86 (86)
                      |.+.|+
T Consensus       183 h~s~v~  188 (541)
T KOG4547|consen  183 HGSPVR  188 (541)
T ss_pred             CCcceE
Confidence            998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.00  E-value=4e-08  Score=52.40  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             EEEECCCCCEEEE-EeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEE-eCCCCEEEEeCCCCeEEEeecC
Q psy13945          4 CIAVSSSGSWIAI-GQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISS-SLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .++|+|+++.++. ...+..+.+||..+++...... +...+.++. +|++..++++ ..++.|.+||+++++++..+..
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            5778999987544 4456689999998877765443 345678888 8999988775 5689999999999998877753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268|consensus

Probab=98.95  E-value=1.9e-09  Score=58.93  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|..++|+|.|+-|++|+-|.+|+++....+.....+ ....+.|.++. +-|...+++|+.|+.|++|.....+.
T Consensus       274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            4789999999999999999999999998766543222 12346789999 99999999999999999998764443

>KOG1332|consensus

Probab=98.94  E-value=3.8e-09  Score=55.27  Aligned_cols=86  Identities=16%  Similarity=0.265  Sum_probs=63.6

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCC--ce-EEEEeCCccceEEEE-eCC---C-----------CeEEEEeC
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTG--TS-LASWKGHEGEILQLV-TAD---D-----------GTLISSSL   60 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~~~~~v~~~~-~~~---~-----------~~~~~~~~   60 (86)
                      .|++++|.|.  |-.+++++.||.|.+.+.+..  .. .....+|.-.|.++. .|.   +           ..|++++.
T Consensus       104 SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc  183 (299)
T KOG1332|consen  104 SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC  183 (299)
T ss_pred             cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence            3678899884  467899999999999987643  22 233456777788887 554   2           34899999


Q ss_pred             CCCEEEEeCCCCeE--EEeecCCCCCCC
Q psy13945         61 DQTISAWHTNDGSL--KCNIQGPTEPVH   86 (86)
Q Consensus        61 ~~~i~~~~~~~~~~--~~~~~~~~~~v~   86 (86)
                      |+.+++|....+..  -+.|.+|.+-||
T Consensus       184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  184 DNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             ccceeeeecCCcchhhhhhhhhcchhhh
Confidence            99999999987642  245788887664

>KOG2048|consensus

Probab=98.94  E-value=6.8e-08  Score=56.32  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=63.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE--EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA--SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|.+++.+|.+..+..|+++|.+..++...++...  .+...++++.++. .+++..+++|+.|+.|++||...+..+.
T Consensus       112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            47889999999999999999988887777666543  3344668999999 8999999999999999999998876665

>KOG2055|consensus

Probab=98.93  E-value=4.2e-08  Score=55.17  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc-ceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG-EILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |..++|+.|++.++..+.+|.|++||+....++.++..... .-.+++ ++++.++++|+..+.+.+||..+
T Consensus       347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            67889999999999888899999999999988888875322 124556 78999999999999999999653

>KOG0268|consensus

Probab=98.90  E-value=2.2e-09  Score=58.69  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=62.1

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGT-SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.++|+|++-.++++++|..++.+|..... ++....+|...|..++ +|.|.-+++|+.|.+|+++..+.+
T Consensus       233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            578999988889999999999999987644 4667788999999999 999999999999999999988654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=9e-09  Score=39.43  Aligned_cols=27  Identities=33%  Similarity=0.582  Sum_probs=25.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLD   27 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~   27 (86)
                      +|.+++|+|+++++++++.|+.+++||
T Consensus        13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   13 SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEEecccccceeeCCCCEEEEEC
Confidence            588999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.89  E-value=2.4e-07  Score=49.44  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=57.3

Q ss_pred             eeEEEECCCCCEE-EEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWI-AIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|+|+++.+ +++..++.+++||..+++....+..+.. +..+. +|++..++ ++..++.+.+||+++++.+..+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence            3568899999865 5677889999999988877665554333 34566 78887665 5556889999999987776665


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       112 ~  112 (300)
T TIGR03866       112 P  112 (300)
T ss_pred             e
Confidence            4

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378|consensus

Probab=98.86  E-value=3.7e-08  Score=56.11  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-CeEEEe
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND-GSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~   77 (86)
                      |...++|+|.++ +|++.+-|..|.+||....+...++. ...+...++ .++|..++.|...+.+..||++. ..++.+
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            456789999765 67789999999999988666655554 456778888 89999999999999999999985 567778


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +..|...|
T Consensus       289 ~sah~~sV  296 (673)
T KOG4378|consen  289 RSAHDASV  296 (673)
T ss_pred             eeecccce
Confidence            87787655

>KOG1273|consensus

Probab=98.86  E-value=1.3e-07  Score=51.32  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD   51 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~   51 (86)
                      ||.+++|++||+.+++++.|-.+.+||+..+.+...++ ...+|+... +|.
T Consensus        67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~  117 (405)
T KOG1273|consen   67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPR  117 (405)
T ss_pred             ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccc
Confidence            68999999999999999999999999999998877766 456677666 553

>KOG0290|consensus

Probab=98.86  E-value=1.2e-07  Score=51.02  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCce---EEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTS---LASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      |+++..|+. |-++|.+.+-|.+-.+||+.++..   -..+-+|.++|+.++ . .....|++.+.||.++++|+|..+.
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            456667765 567899999999999999987633   345567999999999 4 3467889999999999999987554


Q ss_pred             E
Q psy13945         75 K   75 (86)
Q Consensus        75 ~   75 (86)
                      -
T Consensus       232 S  232 (364)
T KOG0290|consen  232 S  232 (364)
T ss_pred             c
Confidence            3

>KOG0290|consensus

Probab=98.85  E-value=4.8e-08  Score=52.42  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCc------------------------------------------------
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGT------------------------------------------------   32 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~------------------------------------------------   32 (86)
                      |..++|..++ ..|++.+.||.++++|++..+                                                
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t  278 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT  278 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence            6788898866 468888999999999986321                                                


Q ss_pred             eEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCC
Q psy13945         33 SLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTND   71 (86)
Q Consensus        33 ~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ...++++|+..|..++ .|. ...+++++.|.+..+||+.+
T Consensus       279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            1233667888899999 774 77899999999999999864

>KOG0322|consensus

Probab=98.84  E-value=1.1e-08  Score=54.18  Aligned_cols=86  Identities=14%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC--CceE--EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT--GTSL--ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~--~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.++.|.+.-..-+.|+.+..+.+|.+..  +...  ....-.+..+..+. .||+..++++++|+.|+++..++..++
T Consensus       207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL  286 (323)
T KOG0322|consen  207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL  286 (323)
T ss_pred             cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch
Confidence            355666665444456677777788887652  3322  12222334566677 899999999999999999999999999


Q ss_pred             EeecCCCCCCC
Q psy13945         76 CNIQGPTEPVH   86 (86)
Q Consensus        76 ~~~~~~~~~v~   86 (86)
                      -.++.|++.|+
T Consensus       287 AVLkyHsagvn  297 (323)
T KOG0322|consen  287 AVLKYHSAGVN  297 (323)
T ss_pred             hhhhhhhccee
Confidence            99999988764

>KOG0772|consensus

Probab=98.83  E-value=2e-08  Score=57.23  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=52.8

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCce-EEEEe--C---CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTS-LASWK--G---HEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~~~~--~---~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ++|-+|+|+. +.+++.+.|+++++||+...+. ...++  .   ..-.+.+.. ++++.+++.++.|+.|.+|+...
T Consensus       271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS  348 (641)
T ss_pred             eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence            5788999966 5688999999999999875433 23322  1   122455666 89999999999999999999743

>KOG0974|consensus

Probab=98.82  E-value=5.6e-08  Score=58.74  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA-SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |..+.++.||+++++.++|..+++|++.+.+... ...+|..+++... .|+  .+++++.|.+.++|+. .+..+.++.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~  254 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYD  254 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhh
Confidence            5678899999999999999999999999888765 6678999998887 776  8999999999999964 344444555


Q ss_pred             CCC
Q psy13945         80 GPT   82 (86)
Q Consensus        80 ~~~   82 (86)
                      .|.
T Consensus       255 ~h~  257 (967)
T KOG0974|consen  255 EHS  257 (967)
T ss_pred             hhh
Confidence            553

>KOG4328|consensus

Probab=98.82  E-value=3.4e-08  Score=55.42  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCC--c--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTG--T--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~--~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |.+++++|-. .++++++.|+++++||++..  +  +......|...|.+.. +|++.-+++-+.|..|++||..
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            6789999965 57899999999999998632  2  2344456888999999 8987779999999999999983

>KOG1274|consensus

Probab=98.79  E-value=3e-07  Score=55.35  Aligned_cols=70  Identities=13%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +..++|+|++..++....++.|.+|+....+.+..++..  ...+..+. +|+|.+++++..++.|.+||..+
T Consensus       191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            457899999877777888999999999888888877652  33466777 89999999999999999999973

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=6.7e-07  Score=49.98  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=56.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEE-eCCCCEEEEeCCCCeEEEeec
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISS-SLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+.+++||++++..+.++.+.++|+.+.+.+........ ...++ ++++.+++.+ ...+.+.++|.++.+.++.+.
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            467899999999999999999999999998888775433 46788 9999988755 578899999999988887664

...

>KOG2096|consensus

Probab=98.78  E-value=6.8e-08  Score=52.51  Aligned_cols=67  Identities=25%  Similarity=0.370  Sum_probs=56.8

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcc---CCce-----EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLR---TGTS-----LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~-----~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ..+.+|+|+++++++...-+++|..-   .|+.     .-.+++|+..|...+ +++...+++.+.|++.++||+.
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            46789999999999988899999863   3332     346789999999999 8999999999999999999974

>KOG2096|consensus

Probab=98.77  E-value=1.3e-07  Score=51.51  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=62.4

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC---CC-----eE
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN---DG-----SL   74 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~-----~~   74 (86)
                      .+....++.+|.+++.+..|.+|+++ |..+.........-+..+ +|+++.++.++...-+.+|.+-   .|     ..
T Consensus       192 ~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r  270 (420)
T KOG2096|consen  192 NIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR  270 (420)
T ss_pred             EEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh
Confidence            34455567889999999999999988 777777665444445556 9999999999999999999862   33     35


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      ...+++|++.|
T Consensus       271 vf~LkGH~saV  281 (420)
T KOG2096|consen  271 VFSLKGHQSAV  281 (420)
T ss_pred             hheeccchhhe
Confidence            56778888765

>KOG0307|consensus

Probab=98.76  E-value=1.1e-08  Score=62.14  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEE--eCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASW--KGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|..+.|++.. +++++|+++|.|.+||+...+.....  ....+.|.+++ .. ....|++++.+++.-+||++..+.+
T Consensus       118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi  197 (1049)
T KOG0307|consen  118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI  197 (1049)
T ss_pred             ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence            47889999965 49999999999999999865543333  22456788888 54 4667788999999999999988777


Q ss_pred             EeecCCCC
Q psy13945         76 CNIQGPTE   83 (86)
Q Consensus        76 ~~~~~~~~   83 (86)
                      -.+..+..
T Consensus       198 i~ls~~~~  205 (1049)
T KOG0307|consen  198 IKLSDTPG  205 (1049)
T ss_pred             cccccCCC
Confidence            77766554

>KOG1334|consensus

Probab=98.76  E-value=4.9e-09  Score=59.16  Aligned_cols=65  Identities=18%  Similarity=0.317  Sum_probs=58.5

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |-|..+++++|++.|.|.+|+-.+++.+.-+.+...-|.|+. +|.-+.|++.+.|..|+||....
T Consensus       402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            356778999999999999999888888888888888999999 99999999999999999998743

>KOG1009|consensus

Probab=98.75  E-value=1.1e-07  Score=52.79  Aligned_cols=70  Identities=11%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccCC-------c--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRTG-------T--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-------~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      |+..+.|..+.. .+++++.|..+++|-+...       +  ....+..|...|..+. +|++..+++|+.++.+.+|..
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~   94 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ   94 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence            567888888665 8999999999999976422       1  1346678999999999 999999999999999999975


Q ss_pred             C
Q psy13945         70 N   70 (86)
Q Consensus        70 ~   70 (86)
                      .
T Consensus        95 ~   95 (434)
T KOG1009|consen   95 G   95 (434)
T ss_pred             c
Confidence            4

>KOG0270|consensus

Probab=98.74  E-value=4.1e-07  Score=51.03  Aligned_cols=84  Identities=17%  Similarity=0.326  Sum_probs=64.0

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCce-EEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC-CeEE
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND-GSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~-~~~~   75 (86)
                      .|.++.|+|. ...+++|+.|+++.+.|.+.... ...++ ..+.|-.+. .+ +...++++..|++++-+|+|. ++++
T Consensus       288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v  366 (463)
T KOG0270|consen  288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV  366 (463)
T ss_pred             ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence            3788999985 46789999999999999874222 23333 234455666 54 466778889999999999996 5999


Q ss_pred             EeecCCCCCC
Q psy13945         76 CNIQGPTEPV   85 (86)
Q Consensus        76 ~~~~~~~~~v   85 (86)
                      +++..|.+.|
T Consensus       367 wt~~AHd~~I  376 (463)
T KOG0270|consen  367 WTLKAHDDEI  376 (463)
T ss_pred             eEEEeccCCc
Confidence            9999998776

>KOG2695|consensus

Probab=98.74  E-value=2.2e-08  Score=54.74  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCC-----ceEEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCCeE--
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTG-----TSLASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDGSL--   74 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~~~--   74 (86)
                      ++.|...+++++.|.+.|.|..+|++.+     +...++ -|...|+++. - .+.+.++..+.+++|.+||.+--++  
T Consensus       257 AlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~  335 (425)
T KOG2695|consen  257 ALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK  335 (425)
T ss_pred             HHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc
Confidence            4556667899999999999999999865     333343 3778888888 4 4788889999999999999987666  


Q ss_pred             -EEeecCCCC
Q psy13945         75 -KCNIQGPTE   83 (86)
Q Consensus        75 -~~~~~~~~~   83 (86)
                       +...++|.+
T Consensus       336 ~V~qYeGHvN  345 (425)
T KOG2695|consen  336 SVMQYEGHVN  345 (425)
T ss_pred             ceeeeecccc
Confidence             888888864

>KOG0642|consensus

Probab=98.74  E-value=7.1e-08  Score=55.25  Aligned_cols=82  Identities=16%  Similarity=0.245  Sum_probs=74.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.-+.++|.+...+++..++.++++|..+++.+....+|...+.+++ .|++..+.+++.|+.+++|.+....|+.....
T Consensus       492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence            34567788888899999999999999999999999999999999999 99999999999999999999988888888877


Q ss_pred             CCC
Q psy13945         81 PTE   83 (86)
Q Consensus        81 ~~~   83 (86)
                      |+.
T Consensus       572 ~r~  574 (577)
T KOG0642|consen  572 HRK  574 (577)
T ss_pred             ccc
Confidence            764

>KOG1063|consensus

Probab=98.74  E-value=1.5e-07  Score=55.22  Aligned_cols=69  Identities=26%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             eeEEEECCCCCEEEEEeCCC-----eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASG-----VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |.+++.+|++++++++....     .|++|+..+-...+.+.+|.-.|+.+. +|++..+++.+.|++..+|...
T Consensus       528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~  602 (764)
T KOG1063|consen  528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ  602 (764)
T ss_pred             EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence            68999999999999877653     488999887777788999999999999 9999999999999999999864

>KOG0321|consensus

Probab=98.72  E-value=1.1e-07  Score=55.37  Aligned_cols=75  Identities=25%  Similarity=0.350  Sum_probs=62.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCCce------EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe--ecCC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTS------LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN--IQGP   81 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~   81 (86)
                      .+.|+.+.++|.+.++|......      +..+.+|...|..+. .|....|++++.|.++++||+.++.+...  +.+|
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence            36788999999999999764322      355678999999999 88888899999999999999999988876  7888


Q ss_pred             CCCC
Q psy13945         82 TEPV   85 (86)
Q Consensus        82 ~~~v   85 (86)
                      ...|
T Consensus       144 ~~Sv  147 (720)
T KOG0321|consen  144 TGSV  147 (720)
T ss_pred             cccc
Confidence            7665

>KOG0307|consensus

Probab=98.72  E-value=9.4e-08  Score=58.27  Aligned_cols=79  Identities=27%  Similarity=0.423  Sum_probs=61.9

Q ss_pred             eeEEEECCCC-CEEEEEeCC---CeEEEEEccC-CceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSG-SWIAIGQAS---GVLTLLDLRT-GTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~---~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +..+.|+|++ ..++++++|   -.|.+||++. ...+..+.+|...|.++. .+ |..++++++.|+.+.+|+.++++.
T Consensus       209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV  288 (1049)
T ss_pred             eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence            4689999987 345544443   3589999874 445677789999999999 65 558889999999999999999988


Q ss_pred             EEeecC
Q psy13945         75 KCNIQG   80 (86)
Q Consensus        75 ~~~~~~   80 (86)
                      +..+-.
T Consensus       289 l~~~p~  294 (1049)
T KOG0307|consen  289 LGELPA  294 (1049)
T ss_pred             eeecCC
Confidence            877644

>KOG2111|consensus

Probab=98.71  E-value=5.4e-07  Score=48.85  Aligned_cols=69  Identities=22%  Similarity=0.347  Sum_probs=56.9

Q ss_pred             CEEE-EEeCCCeEEEEEccCCce--EEEEeCCccceEEEE-eCCCCeEEEEeCCCC-EEEEeCCCCeEEEeecC
Q psy13945         12 SWIA-IGQASGVLTLLDLRTGTS--LASWKGHEGEILQLV-TADDGTLISSSLDQT-ISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        12 ~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~   80 (86)
                      .+++ .|...|.|.+.|+...+.  .....+|...|.|+. ..+|..+++++.+|+ |++||.++|..+++++.
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            4444 466678999999875443  467789999999999 999999999999997 68999999999988863

>KOG0974|consensus

Probab=98.71  E-value=1.6e-07  Score=56.86  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=64.9

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE-eecCCCC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC-NIQGPTE   83 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~   83 (86)
                      .++++.-++++|.--+.+.+|+....+....+.+|.+.++++. +.++..+++.+.|.++++|++.+.+... +.-+|+.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            3455666788898899999999875444557889999999999 9999999999999999999998876554 5556765


Q ss_pred             CC
Q psy13945         84 PV   85 (86)
Q Consensus        84 ~v   85 (86)
                      .|
T Consensus       220 Rv  221 (967)
T KOG0974|consen  220 RV  221 (967)
T ss_pred             ee
Confidence            43

>KOG2445|consensus

Probab=98.70  E-value=2e-07  Score=50.36  Aligned_cols=79  Identities=16%  Similarity=0.305  Sum_probs=61.1

Q ss_pred             CeeEEEECCCC----CEEEEEeCCCeEEEEEccCC--------------------ceEEEEeCCccceEEEE-eCCCCeE
Q psy13945          1 LIRCIAVSSSG----SWIAIGQASGVLTLLDLRTG--------------------TSLASWKGHEGEILQLV-TADDGTL   55 (86)
Q Consensus         1 ~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~v~~~~-~~~~~~~   55 (86)
                      ||+.++|.|+-    +++++++.|| |+||.+...                    +.+..+..|+++|+.+. .-.|..+
T Consensus       225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL  303 (361)
T KOG2445|consen  225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL  303 (361)
T ss_pred             cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence            68899999953    6789999999 999987631                    11334567889999999 8899999


Q ss_pred             EEEeCCCCEEEEeCC---CCeEEEeecC
Q psy13945         56 ISSSLDQTISAWHTN---DGSLKCNIQG   80 (86)
Q Consensus        56 ~~~~~~~~i~~~~~~---~~~~~~~~~~   80 (86)
                      .+.+.||.+++|...   .-+|...+..
T Consensus       304 sStGdDG~VRLWkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKANYNNLWKCTSVLKA  331 (361)
T ss_pred             eecCCCceeeehhhhhhhhheeeeEEec
Confidence            999999999999753   2356665543

>KOG0280|consensus

Probab=98.70  E-value=3.5e-07  Score=49.22  Aligned_cols=73  Identities=19%  Similarity=0.265  Sum_probs=55.0

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEccC-CceE-EEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCC-CeEEE
Q psy13945          4 CIAVSS-SGSWIAIGQASGVLTLLDLRT-GTSL-ASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTND-GSLKC   76 (86)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~-~~~~~   76 (86)
                      ...|+. +.+++.+|++|+.+.-||++. ++.+ ..-+.|...|.++. + |.+..+++|+.|-.|++||.|. +++++
T Consensus       170 ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  170 TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            345554 346788999999999999983 3333 23456778889998 5 5688899999999999999984 55443

>KOG2919|consensus

Probab=98.70  E-value=2e-07  Score=50.78  Aligned_cols=82  Identities=21%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC-CCCEEEEeCCC-CeEEEe
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL-DQTISAWHTND-GSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~~~~~-~~~~~~   77 (86)
                      |.|++|+|-. ..++.++=...+=++.-..+.++..+.+|.+.|+.+. .+++..+.+|.. +..|.+||+|. +.++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            5789999955 5788888888888888888888888889999999999 999998887764 67899999986 456666


Q ss_pred             ecCCCC
Q psy13945         78 IQGPTE   83 (86)
Q Consensus        78 ~~~~~~   83 (86)
                      +..|..
T Consensus       290 L~rhv~  295 (406)
T KOG2919|consen  290 LERHVG  295 (406)
T ss_pred             hhhhcc
Confidence            665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.70  E-value=5e-07  Score=52.14  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.+.+++|+...++.|..||.+.+||...+..... + ..-....++ +|++..++.++..|.+.+||+.-.
T Consensus       262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            67899999999999999999999999765533222 2 223346778 999999999999999999998543

>KOG4328|consensus

Probab=98.69  E-value=3.2e-07  Score=51.68  Aligned_cols=72  Identities=22%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             CeeEEEECCCC--CEEEEEeCCCeEEEEEccCC----ceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSG--SWIAIGQASGVLTLLDLRTG----TSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|++++|+|..  .++++|+..|.|-+||+...    .-...+..|..+|.++. +| +...+++.+.|++|++-|++.+
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence            58899999955  57889999999999999522    22456677889999999 76 5678899999999999998643

>KOG2106|consensus

Probab=98.68  E-value=9.1e-07  Score=50.73  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=56.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC-ceEEEE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG-TSLASW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ++++++|+|+|..++.|+.|..|++|.++.. ....+. +.+..+|..+. +++++.+.+-+.|..|..|..
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            5789999999999999999999999987643 332222 23448899999 999999999999999999954

>KOG4227|consensus

Probab=98.68  E-value=3.3e-07  Score=51.27  Aligned_cols=78  Identities=14%  Similarity=0.130  Sum_probs=64.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEcc------CCceEEEEeC-CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLR------TGTSLASWKG-HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~-~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      |.++.|+.+++++++|++|..+++|+..      +.++++.... |...|+|+. ......+.+|..++++...|+.+.+
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence            5788999999999999999999999875      2344444433 457899999 7788899999999999999999988


Q ss_pred             EEEeec
Q psy13945         74 LKCNIQ   79 (86)
Q Consensus        74 ~~~~~~   79 (86)
                      .+.++.
T Consensus       139 si~V~~  144 (609)
T KOG4227|consen  139 SIYVAN  144 (609)
T ss_pred             eeeeec
Confidence            877764

>KOG0649|consensus

Probab=98.67  E-value=4e-07  Score=48.07  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=57.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE------EEeC--C-----ccceEEEE-eCCCCeEEEEeCCCCEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA------SWKG--H-----EGEILQLV-TADDGTLISSSLDQTISA   66 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~--~-----~~~v~~~~-~~~~~~~~~~~~~~~i~~   66 (86)
                      ||..++|.  ..++++++ ||.++-|.........      ....  +     -..|.++. .|...-++.++.|+.+..
T Consensus        64 piy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~  140 (325)
T KOG0649|consen   64 PIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ  140 (325)
T ss_pred             Ceeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE
Confidence            46677776  23444444 5999988765332210      0011  1     13567777 788777788889999999


Q ss_pred             EeCCCCeEEEeecCCCCCCC
Q psy13945         67 WHTNDGSLKCNIQGPTEPVH   86 (86)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~v~   86 (86)
                      ||+++|+...++++|+++|+
T Consensus       141 ~dlE~G~i~r~~rGHtDYvH  160 (325)
T KOG0649|consen  141 VDLEDGRIQREYRGHTDYVH  160 (325)
T ss_pred             EEecCCEEEEEEcCCcceee
Confidence            99999999999999998874

>KOG1963|consensus

Probab=98.67  E-value=4.6e-07  Score=54.09  Aligned_cols=72  Identities=21%  Similarity=0.410  Sum_probs=61.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC--C-c-eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT--G-T-SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~-~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +++.+++|++++++++..+|.|.+|.-..  . . ....+.-|..+|.++. +++|..+++|+..+.+-.|...+++
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            57899999999999999999999996322  1 2 2345667889999999 9999999999999999999998765

>KOG3881|consensus

Probab=98.66  E-value=7.5e-07  Score=49.38  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +++.+.|-+.  ...|+++..-+.+++||.+.+ .+...+.-....+.++. .|++..++++...+.+..+|++.++...
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence            3567888876  678999999999999998854 34566666678899999 9999999999999999999999988776


Q ss_pred             e-ecCCCCCC
Q psy13945         77 N-IQGPTEPV   85 (86)
Q Consensus        77 ~-~~~~~~~v   85 (86)
                      . +.+-.+.|
T Consensus       284 ~~~kg~tGsi  293 (412)
T KOG3881|consen  284 CGLKGITGSI  293 (412)
T ss_pred             cccCCccCCc
Confidence            5 55544443

>KOG2139|consensus

Probab=98.65  E-value=8.7e-07  Score=49.02  Aligned_cols=70  Identities=17%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             CeeEEEECCCCCEEEEEeC-CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQA-SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      +|+.+.|.+||..+++++- +..+.+||.+++..+-......+.+.-+. +|++.++..+..|+..++|+..
T Consensus       197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            5889999999988776554 57899999988765433322345566677 9999999999999999999543

>KOG0650|consensus

Probab=98.64  E-value=1.9e-07  Score=54.25  Aligned_cols=46  Identities=24%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         34 LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        34 ~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ...+.+|++.|.++. .|.+.++++|+.|+++++|.+.++.|+.++.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~  439 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ  439 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe
Confidence            345789999999999 9999999999999999999999999998764

>KOG1524|consensus

Probab=98.64  E-value=8.2e-07  Score=51.37  Aligned_cols=80  Identities=19%  Similarity=0.412  Sum_probs=61.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.|++|.|+.+.++-. ..+.+.+--+.....+..+++|.+-|.++. ++....+++|+.|-..++||. .|..+++..
T Consensus       147 ~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~  224 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSA  224 (737)
T ss_pred             eeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCC
Confidence            58899999987654432 234566655555566788999999999999 999999999999999999995 466666555


Q ss_pred             CCC
Q psy13945         80 GPT   82 (86)
Q Consensus        80 ~~~   82 (86)
                      .|.
T Consensus       225 ~~e  227 (737)
T KOG1524|consen  225 AEE  227 (737)
T ss_pred             hhc
Confidence            544

>KOG2055|consensus

Probab=98.62  E-value=8.9e-07  Score=50.09  Aligned_cols=76  Identities=24%  Similarity=0.362  Sum_probs=65.7

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      ....++++++|+..+..|.|.+....+++.+..++. .+.+..+. +.++..++..+.++.|.+||+++..+++.+..
T Consensus       308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D  384 (514)
T KOG2055|consen  308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD  384 (514)
T ss_pred             eeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence            345688999999999999999999999998888875 56777777 78889999999999999999999988888764

>KOG1188|consensus

Probab=98.61  E-value=3.5e-07  Score=49.96  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=50.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCC
Q psy13945         12 SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      ..++++-..+.+++||..++..+..++++...+..+. ..  ....+.+++.|++|++||+|..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~  104 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ  104 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence            4578888899999999999999999998877666655 32  5677889999999999999864

>KOG1523|consensus

Probab=98.60  E-value=1e-06  Score=47.90  Aligned_cols=70  Identities=14%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ||+|.+|++|+..++.+.....+.+|.....   +...+++.|...|+.++ .|..+.+++++.|..-.+|...
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            6899999999999999999999999986543   45678888999999999 9999999999999999999883

>KOG2321|consensus

Probab=98.59  E-value=9.7e-07  Score=51.28  Aligned_cols=76  Identities=12%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC------Cc-----cceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG------HE-----GEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~-----~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ++++..++...++++|..++.+-.||.........+..      +.     ..|+++. +.++-.+..|..++.+.++|+
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence            57888899999999999999999999887655444432      11     2377888 666889999999999999999


Q ss_pred             CCCeEEEe
Q psy13945         70 NDGSLKCN   77 (86)
Q Consensus        70 ~~~~~~~~   77 (86)
                      +..+++..
T Consensus       258 Ra~~pl~~  265 (703)
T KOG2321|consen  258 RASKPLLV  265 (703)
T ss_pred             ccCCceee
Confidence            98776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.59  E-value=5.5e-06  Score=45.35  Aligned_cols=83  Identities=30%  Similarity=0.497  Sum_probs=64.7

Q ss_pred             eEEEE-CCCCC-EEEE-EeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeC-CCCEEEEeCCCCeEEE
Q psy13945          3 RCIAV-SSSGS-WIAI-GQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSL-DQTISAWHTNDGSLKC   76 (86)
Q Consensus         3 ~~~~~-~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~   76 (86)
                      ..+.+ .+++. .+.. +..++.+.+|+... ......+..|...+..+. .+++..++.++. ++.+++|+...+..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             eeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence            33444 66676 4444 34489999999887 677788888999999898 899888888875 9999999999888888


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+.+|...|
T Consensus       193 ~~~~~~~~v  201 (466)
T COG2319         193 TLAGHTDPV  201 (466)
T ss_pred             eeccCCCce
Confidence            887776554

>KOG2106|consensus

Probab=98.59  E-value=4e-06  Score=48.23  Aligned_cols=69  Identities=22%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ++.|++|+|.| .++.|...|...+.|..+...+. ....+.++.++. +|++..++.++.|+.|.++.+..
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            45678888888 77888888888888877644333 333378899999 99999999999999999998764

>KOG0644|consensus

Probab=98.58  E-value=1.4e-08  Score=60.70  Aligned_cols=65  Identities=29%  Similarity=0.458  Sum_probs=57.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |+.++.+.++..+++++.|..|++|.+.++.++..+.+|++.|++++ +|-.    +.+.|+++++||.+
T Consensus       235 itdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  235 ITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            45667777778899999999999999999999999999999999998 7764    67889999999987

>KOG4227|consensus

Probab=98.54  E-value=2.1e-06  Score=48.18  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC--CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG--HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      |.|++|...++.+++|.+++++..-|+.+.+.+..+..  ..+.|+.+. +|....+++.+.++.+.+||.+...
T Consensus       108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            78999999999999999999999999998887766543  335899999 9999999999999999999998654

>KOG0280|consensus

Probab=98.52  E-value=3.1e-06  Score=45.73  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceE--EEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCC-CCeEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL--ASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTN-DGSLKCN   77 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   77 (86)
                      .++.|++.+..++++..+|.+.+.+.......  +.++.|.-+.+... + .+...+.+|+.|+.+..||+| .++.++.
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            36788888888999999999987665444333  36788888877776 3 456788999999999999999 4444433


Q ss_pred             -ecCCCCC
Q psy13945         78 -IQGPTEP   84 (86)
Q Consensus        78 -~~~~~~~   84 (86)
                       .+-|...
T Consensus       205 n~kvH~~G  212 (339)
T KOG0280|consen  205 NSKVHTSG  212 (339)
T ss_pred             cceeeecc
Confidence             3344433

>KOG1310|consensus

Probab=98.49  E-value=1.5e-06  Score=50.48  Aligned_cols=63  Identities=27%  Similarity=0.410  Sum_probs=58.1

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         9 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ..++++++|++||...+|+-.++.....+.+...-+.|+. +|....+++.+-|.+|+||....
T Consensus       634 qrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  634 QRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA  697 (758)
T ss_pred             cCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence            4578999999999999999999999999999999999999 99999999999999999999654

>KOG0650|consensus

Probab=98.49  E-value=2.5e-07  Score=53.79  Aligned_cols=83  Identities=11%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-CeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND-GSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~   79 (86)
                      |.++.|+|...+++.+. ...|++||+........+......+.+++ +|.|..++.++.|+.+..+|+.- .++.+.++
T Consensus       569 vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr  647 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR  647 (733)
T ss_pred             eeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh
Confidence            56889999888877765 67899999987776666665667788999 99999999999999999999864 35667777


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|...|
T Consensus       648 ~H~~av  653 (733)
T KOG0650|consen  648 LHEKAV  653 (733)
T ss_pred             hhhhhh
Confidence            776554

>KOG4378|consensus

Probab=98.43  E-value=7e-06  Score=47.32  Aligned_cols=82  Identities=11%  Similarity=0.164  Sum_probs=64.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCc-cceEEEE-eCCCC-eEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHE-GEILQLV-TADDG-TLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      |+++.++-..++|++++..|.|.+..+.++.....+.... +.|.-+. ++..+ ++.+++.++.+.+||.....+.+.+
T Consensus       124 vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  124 VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             eEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence            7889999889999999999999999999888877777654 4555667 77655 4568899999999999766666554


Q ss_pred             -cCCCC
Q psy13945         79 -QGPTE   83 (86)
Q Consensus        79 -~~~~~   83 (86)
                       +.|..
T Consensus       204 ~~~HsA  209 (673)
T KOG4378|consen  204 SEAHSA  209 (673)
T ss_pred             hhhccC
Confidence             44554

>KOG1523|consensus

Probab=98.42  E-value=4.2e-06  Score=45.64  Aligned_cols=72  Identities=7%  Similarity=0.000  Sum_probs=60.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      .|++++|+|..+.|++++.|.--++|....+   +....+..++....++. +|.+..|+.|+..+.|.+|.++..
T Consensus        57 ~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   57 IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence            3788999999999999999999999998433   23445556778889999 999999999999999999988643

>KOG1963|consensus

Probab=98.38  E-value=4.8e-06  Score=50.01  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=58.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .|.++.|+++|.++++|+..+.+.+|...+++ .+-+..-...|..+. +|++........|+.|.+....+
T Consensus       253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            37899999999999999999999999998887 333344567788888 99999999888999988876543

>KOG1587|consensus

Probab=98.36  E-value=1.1e-05  Score=47.37  Aligned_cols=71  Identities=24%  Similarity=0.424  Sum_probs=52.0

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCce--EEEE----eCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTS--LASW----KGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~~~----~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~   70 (86)
                      +|+++.|+| +..+++.|.-+|.|.+||+..+..  ...+    ..|...+..+. -.+  +.-+++++.|+.|..|+++
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            478999999 456788888999999999976543  2221    23566676665 333  3558899999999999876


Q ss_pred             C
Q psy13945         71 D   71 (86)
Q Consensus        71 ~   71 (86)
                      .
T Consensus       324 ~  324 (555)
T KOG1587|consen  324 M  324 (555)
T ss_pred             c
Confidence            4

>KOG2695|consensus

Probab=98.35  E-value=2.2e-06  Score=47.24  Aligned_cols=77  Identities=22%  Similarity=0.415  Sum_probs=55.7

Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEEccCCce---EEEEeCCccceEEEE---eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSS-SGSWIAIGQASGVLTLLDLRTGTS---LASWKGHEGEILQLV---TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +++..-. +++.+.+.+.+++|.+||.+--+.   +..+.+|-..-.-+.   .++...+++++.|...++|.++.+..+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            3443333 678889999999999999874443   667777754333222   466778888999999999999988766


Q ss_pred             Eeec
Q psy13945         76 CNIQ   79 (86)
Q Consensus        76 ~~~~   79 (86)
                      .++.
T Consensus       382 ~tip  385 (425)
T KOG2695|consen  382 CTIP  385 (425)
T ss_pred             eccC
Confidence            6553

>KOG1409|consensus

Probab=98.33  E-value=3.9e-06  Score=46.24  Aligned_cols=72  Identities=18%  Similarity=0.316  Sum_probs=60.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce-EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      .+.+++|.+..+.++++..+..+.+||+.-.+- ...+.+|...|..+. .+....+.+++.|+.|.+|+++..
T Consensus       199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            367899999999999999999999999875443 456678888888887 677788899999999999998643

>KOG0771|consensus

Probab=98.30  E-value=1.1e-05  Score=45.15  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=60.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |++++.+.||++++.|..+|.|.+++..+.+..+-. +.|...|+.+. .|+.+.+++-+.+....+..+..
T Consensus       284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            689999999999999999999999998877765544 56888999999 99999999988888888876643

>KOG1272|consensus

Probab=98.29  E-value=3.1e-07  Score=51.99  Aligned_cols=85  Identities=18%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |..+.|-|.--++++++..|.+..-|+.+|+....+....+.+..+. .|-+..+-.|...+++.+|.....+++-.+.+
T Consensus       212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc  291 (545)
T KOG1272|consen  212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC  291 (545)
T ss_pred             hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence            44567888777899999999999999999998877766667777888 89999999999999999999998888888888


Q ss_pred             CCCCCC
Q psy13945         81 PTEPVH   86 (86)
Q Consensus        81 ~~~~v~   86 (86)
                      |.+.|+
T Consensus       292 H~g~V~  297 (545)
T KOG1272|consen  292 HRGPVS  297 (545)
T ss_pred             cCCCcc
Confidence            887764

>KOG1240|consensus

Probab=98.28  E-value=2.4e-05  Score=49.24  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEccCCc-------eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          4 CIAVSS-SGSWIAIGQASGVLTLLDLRTGT-------SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .++.++ ++.++++|+.||+|++|+.....       ...++.....++.++. .+.+..++.++.||.+++.++..
T Consensus      1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            445554 45899999999999999986321       1233443456788888 88999999999999999998764

>KOG1538|consensus

Probab=98.28  E-value=7.4e-06  Score=48.90  Aligned_cols=67  Identities=21%  Similarity=0.388  Sum_probs=59.3

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      .|+.+-++|+++..|+.++.+.++. +.|-.+.++......|+.+. .|+++.++.|+.|++|-++++-
T Consensus       226 ~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  226 CCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             hhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            4788889999999999999999997 55777777777888999999 9999999999999999998863

>KOG4714|consensus

Probab=98.28  E-value=1e-06  Score=46.85  Aligned_cols=70  Identities=19%  Similarity=0.378  Sum_probs=56.1

Q ss_pred             eeEEEECCC-CCEEEEEeCCCeEEEEEccCCce-EEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |++++-+|. .+++++|..+|.+-+||.+.... ...+++|+.+++.+- +| ++..+++++.|+.+-.||..+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            455666774 46788999999999999987654 345678999999888 76 578899999999999999764

>smart00320 WD40 WD40 repeats

Probab=98.26  E-value=1.1e-05  Score=29.49  Aligned_cols=36  Identities=36%  Similarity=0.556  Sum_probs=29.7

Q ss_pred             eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945         33 SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus        33 ~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      ....+..+...+.++. .+.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455566778889998 88888999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1188|consensus

Probab=98.20  E-value=2e-05  Score=43.43  Aligned_cols=74  Identities=16%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             eeEEEECCCC-CEEEEEeCCCeEEEEEccCCce---EEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTS---LASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      |+++.|+|.. +++++|+-||.+.++|+.....   +...-.+...|.++. . +.-..+.+-.......+|+++.+.+.
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            7899999965 6899999999999999875433   222233556677777 4 33446788889999999999877543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.00013  Score=41.75  Aligned_cols=73  Identities=19%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             eeEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~--~i~~~~~~~~~~   74 (86)
                      +....|+|||+.++..+.   +..|++||+.+++.. .+....+.+.... +|++..++ +...++  .|.+||+.++..
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~  282 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT  282 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence            567899999998776543   468999999877653 3333445556667 89998765 555444  477778877654


Q ss_pred             E
Q psy13945         75 K   75 (86)
Q Consensus        75 ~   75 (86)
                      .
T Consensus       283 ~  283 (435)
T PRK05137        283 T  283 (435)
T ss_pred             E
Confidence            3

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=4.1e-05  Score=43.71  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC--CCCeEEEeecC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT--NDGSLKCNIQG   80 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~   80 (86)
                      ...|+|||+.++..+.+. +.+||+.+++........  ...... +|++..++.++.++...+|++  .++.....+..
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            356899999988777654 555898877654322221  223456 899999999888888887775  35777777776


Q ss_pred             CCCC
Q psy13945         81 PTEP   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      |...
T Consensus       414 ~~g~  417 (429)
T PRK01742        414 SDGQ  417 (429)
T ss_pred             CCCC
Confidence            6554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.15  E-value=0.00023  Score=41.29  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC----CCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL----DQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~----~~~i~~~~~~~~~~~~   76 (86)
                      |.++..++||..++.+.+...+.+.|++++.+...-+...+-|.... +|++++++-+--    ...|+++|+..++...
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            67889999999999999999999999999988666555667888888 999999875433    3578999998776544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.00011  Score=42.03  Aligned_cols=69  Identities=29%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             eeEEEECCCCCEEEEEeCC---CeEEEEEccCCceE--EEEeCCccceEEEE-eCCCCeEEEE-eCCCCEEEE--eCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSL--ASWKGHEGEILQLV-TADDGTLISS-SLDQTISAW--HTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~--~~~~~~~~~v~~~~-~~~~~~~~~~-~~~~~i~~~--~~~~~   72 (86)
                      +....|+|||+.++..+.+   ..|++||+.+++..  ..+.++   ..... +|++..++.. ..++...+|  |..++
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence            5678999999988766533   47999999876542  222232   33567 8999988765 456765555  65555


Q ss_pred             e
Q psy13945         73 S   73 (86)
Q Consensus        73 ~   73 (86)
                      .
T Consensus       283 ~  283 (429)
T PRK01742        283 T  283 (429)
T ss_pred             C
Confidence            4

>smart00320 WD40 WD40 repeats

Probab=98.10  E-value=1.5e-05  Score=29.09  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=24.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLD   27 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~   27 (86)
                      +|.++.|.+++..+++++.++.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            367899999889999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1587|consensus

Probab=98.09  E-value=3.1e-05  Score=45.56  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccC--CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRT--GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +++++|||-.. .|++++.+|.+.+||+..  ..+..+..........+. ++++..++.|...|.+.++++..
T Consensus       444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            78899999775 577888899999999863  333444443444445556 67799999999999999999854

>KOG1645|consensus

Probab=98.07  E-value=4.3e-05  Score=43.07  Aligned_cols=70  Identities=13%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      |..++|+|..+ ++..++.+..|.+.|+.+..+...+..+ ..+++.. .. +...+..|...+-|.++|+++-
T Consensus       196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             hhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            56789999887 7889999999999999988887777766 6677776 54 4667788889999999999853

>KOG1517|consensus

Probab=98.06  E-value=6.7e-05  Score=46.97  Aligned_cols=80  Identities=10%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCC---eEEEee
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDG---SLKCNI   78 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~   78 (86)
                      +.|.....++.++++...|++||.....+...+ .+....++++. . ..+..++.|..||.+++||.+..   ..+...
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence            455555555666666899999998866655443 33455677776 4 46799999999999999998743   245566


Q ss_pred             cCCCCC
Q psy13945         79 QGPTEP   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      +.|++.
T Consensus      1251 R~h~~~ 1256 (1387)
T KOG1517|consen 1251 REHNDV 1256 (1387)
T ss_pred             cccCCc
Confidence            666654

>KOG1517|consensus

Probab=98.05  E-value=7.4e-05  Score=46.79  Aligned_cols=62  Identities=26%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             CCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccc--eEEEE-eCCCC-eEEEEeCCCCEEEEeCCC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGE--ILQLV-TADDG-TLISSSLDQTISAWHTND   71 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~--v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~   71 (86)
                      .|..+++|..||.+++||.+..   ..+...+.|+..  |..+. -+.|. .+++++.+|.|.+||++.
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            4688999999999999997632   235666777765  77777 55444 599999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.02  E-value=0.00031  Score=38.74  Aligned_cols=69  Identities=12%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             eEEEECCCCCEEEEEeC-CCeEEEEEccC--Cc--eEEEEeCCc------cceEEEE-eCCCCeEEEEe-CCCCEEEEeC
Q psy13945          3 RCIAVSSSGSWIAIGQA-SGVLTLLDLRT--GT--SLASWKGHE------GEILQLV-TADDGTLISSS-LDQTISAWHT   69 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~--~~~~~~~~~------~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~   69 (86)
                      ..+.|+||++++++... ++.+.+|++..  ++  ....+....      .....+. +|++..++.+. .++.|.+|++
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            46899999999887766 89999999873  22  233332111      1122466 89998887765 4788999998


Q ss_pred             CC
Q psy13945         70 ND   71 (86)
Q Consensus        70 ~~   71 (86)
                      ..
T Consensus       258 ~~  259 (330)
T PRK11028        258 SE  259 (330)
T ss_pred             eC
Confidence            54

>KOG2315|consensus

Probab=98.02  E-value=0.00022  Score=41.69  Aligned_cols=66  Identities=15%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             eEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC------CCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD------QTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~------~~i~~~~~~   70 (86)
                      +++-|+|.|++++.++-   .|.+-+||..+.+.+..+.+....  -.. +|+|.+++++...      +.+++|++.
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            46789999998876544   578999999998888888765443  335 8999999988754      677888874

>KOG4547|consensus

Probab=98.01  E-value=0.00011  Score=42.86  Aligned_cols=67  Identities=18%  Similarity=0.405  Sum_probs=52.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-----CCeEE-EEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-----DGTLI-SSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-----~~~~~-~~~~~~~i~~~~~~   70 (86)
                      +..++++||+..+++++  +.|++||+.+++....+.+|.++|.++. --.     +..++ +......+.+|-..
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            45788999999888774  7899999999999999999999999887 322     44454 44556677788654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.00046  Score=39.64  Aligned_cols=76  Identities=16%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             eeEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEE-eCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQ---ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISS-SLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~-~~~~--~i~~~~~~~~~~   74 (86)
                      +...+|+|||+.++..+   ....+.++++.+++.... ........... +|++..++.. ..++  .|.+||+.++..
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~  279 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  279 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            56789999998877543   245788999887754322 22222334567 8999877643 3343  588899987765


Q ss_pred             EEee
Q psy13945         75 KCNI   78 (86)
Q Consensus        75 ~~~~   78 (86)
                      .+..
T Consensus       280 ~~lt  283 (429)
T PRK03629        280 RQVT  283 (429)
T ss_pred             EEcc
Confidence            4433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.97  E-value=0.00023  Score=39.22  Aligned_cols=66  Identities=12%  Similarity=0.175  Sum_probs=45.0

Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEEccCCce----EEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQA-SGVLTLLDLRTGTS----LASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~   70 (86)
                      .+.++|++++++++.. +..+.+|++.....    ...... ......+. +|++..++.+. .++.|.+|++.
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            4789999998888754 68899999864321    222211 12234567 89998887665 48899999874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.0005  Score=39.45  Aligned_cols=67  Identities=24%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             eeEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~   69 (86)
                      +...+|+|||+.++..+.   ...+.+||+.+++... +........... +|++..++ +...++...+|.+
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            457899999988776543   2459999998776532 332334445667 89998775 5666776666643

>KOG4532|consensus

Probab=97.93  E-value=0.00053  Score=37.22  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC-CceE-EEEeCC-ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT-GTSL-ASWKGH-EGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~-~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ..++.+++|+++.++.++...+..|.++. ++.+ ....+. ...-.+.. +.....++.+..|+++.+||++.-.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            45788999999999999999999998764 3333 323332 23345555 6778889999999999999998643

>KOG1275|consensus

Probab=97.93  E-value=6.2e-05  Score=46.36  Aligned_cols=66  Identities=15%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEe---------CCCCEEEEeCCCCeE
Q psy13945          8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSS---------LDQTISAWHTNDGSL   74 (86)
Q Consensus         8 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~   74 (86)
                      ..+++.+++|+..|+|.+.|..+-+.+.++.+|.+.+..+ .-.+..+++++         .|..+++||+|.-+.
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee-eccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            4567999999999999999999999999999999887766 34577777766         356889999976443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.91  E-value=0.00047  Score=43.71  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=54.6

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-C------------CccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-G------------HEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~------------~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      .+++++++|.++++...++.|++||..++....... +            .-.....+. .+++..+++-..++.|++||
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            367889999988888889999999987766532211 1            112345677 88899888989999999999


Q ss_pred             CCCCeE
Q psy13945         69 TNDGSL   74 (86)
Q Consensus        69 ~~~~~~   74 (86)
                      +.++..
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            988754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.88  E-value=0.00017  Score=28.86  Aligned_cols=28  Identities=21%  Similarity=0.459  Sum_probs=25.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEc
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDL   28 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~   28 (86)
                      .|.+++|+|...+++.+..+|.|.++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            3779999999999999999999999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.00037  Score=40.01  Aligned_cols=74  Identities=22%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             eeEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~--~i~~~~~~~~~~   74 (86)
                      +....|+|||+.++..+.   ...+++||+..++... +....+...... +|++..++ +.+.++  .|.+||+.++..
T Consensus       206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence            456789999998776653   3469999988776532 222233344566 89988764 444443  689999887764


Q ss_pred             EE
Q psy13945         75 KC   76 (86)
Q Consensus        75 ~~   76 (86)
                      ..
T Consensus       285 ~~  286 (433)
T PRK04922        285 TR  286 (433)
T ss_pred             EE
Confidence            43

>KOG1524|consensus

Probab=97.87  E-value=0.00012  Score=42.98  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI   56 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~   56 (86)
                      +.+-.|+|||.-++++++||.+++|. ++|....++.....+|+|++ .|+...++
T Consensus       107 ~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen  107 ISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             hhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            45668999999999999999999998 55665555555678899998 77655443

>KOG1832|consensus

Probab=97.87  E-value=3.6e-05  Score=47.58  Aligned_cols=78  Identities=21%  Similarity=0.436  Sum_probs=63.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC-C-CEEEEeCCC-CeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD-Q-TISAWHTND-GSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~-~-~i~~~~~~~-~~~~~~   77 (86)
                      -+|++|+-+.+.++.|...|.+++++..+|.......+|+..++.+. +.++..+++.+.. . ...+|+... +.+.+.
T Consensus      1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS 1183 (1516)
T ss_pred             eeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccc
Confidence            36899999999999999999999999999999888999999999999 8888877765443 3 457898753 444444


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      |.
T Consensus      1184 f~ 1185 (1516)
T KOG1832|consen 1184 FD 1185 (1516)
T ss_pred             cc
Confidence            43

>KOG2079|consensus

Probab=97.86  E-value=0.00024  Score=44.54  Aligned_cols=63  Identities=19%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEE---E-eCCCCeEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL---V-TADDGTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~---~-~~~~~~~~~~~~~~~   63 (86)
                      ||++++|+.||..++.|-.+|.|.+||...++....+..+..+...+   . ...+..++++...|.
T Consensus       132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            68999999999999999999999999999888877776655544443   3 345556777776665

>KOG1240|consensus

Probab=97.86  E-value=0.00058  Score=43.59  Aligned_cols=80  Identities=23%  Similarity=0.478  Sum_probs=61.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC-CccceEEEE-eC---CCCeEEEEe--CCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG-HEGEILQLV-TA---DDGTLISSS--LDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~-~~---~~~~~~~~~--~~~~i~~~~~~~~~   73 (86)
                      .|++++.+|.++.++.|...|.+.+||++-+.++..+.- +..++..+. +|   .....++++  ..+.+.+|++.+|.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            378999999999999999999999999998887776653 335566665 54   234555444  46789999999998


Q ss_pred             EEEeecC
Q psy13945         74 LKCNIQG   80 (86)
Q Consensus        74 ~~~~~~~   80 (86)
                      +..++..
T Consensus      1277 ~~~vl~~ 1283 (1431)
T KOG1240|consen 1277 RQTVLWA 1283 (1431)
T ss_pred             ceEEEEc
Confidence            8777754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.84  E-value=0.00091  Score=37.85  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             CEE-EEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         12 SWI-AIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        12 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +++ ++-..++.+.+.|..+.+.+..+......-..+. +++++.++..+.|+.+.++|+.+.+.+..+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~   75 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK   75 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence            344 4666789999999999998888875433333455 7899998888899999999999988777664

...

>KOG1064|consensus

Probab=97.83  E-value=1.8e-05  Score=51.66  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ++++++.|.-+++++|+++|.+++||++-.+...++..       + . ....+++++..+.+++|++..-..+..+
T Consensus      2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~-~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------L-D-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------h-h-hhheeeccCcccceEEEEccccchhhcC
Confidence            57899999999999999999999999987666555544       1 2 4567889999999999998765544443

>KOG4640|consensus

Probab=97.77  E-value=0.00076  Score=40.23  Aligned_cols=74  Identities=19%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceE-EEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEIL-QLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      .-+.|+|.-.+|+.+..+|.+.+..+. ...+-++..++..+. ++. .|+|..++.|-.|++|++.|...+..+..
T Consensus        24 ~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            356789988999999999998887765 444445554566666 888 89999999999999999999998766654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.0016  Score=37.54  Aligned_cols=79  Identities=19%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             eEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCC---EEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT---ISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~---i~~~~~~~~~~~   75 (86)
                      ....|+|||+.++..+.+   ..+.+||+.+++... +... ....... +|++..++..+.++.   +.++++ ++...
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~  410 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFK  410 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCe
Confidence            357899999988765433   358888987776432 2221 1223455 799999887776653   566676 45555


Q ss_pred             EeecCCCCC
Q psy13945         76 CNIQGPTEP   84 (86)
Q Consensus        76 ~~~~~~~~~   84 (86)
                      ..+..|...
T Consensus       411 ~~l~~~~~~  419 (429)
T PRK03629        411 ARLPATDGQ  419 (429)
T ss_pred             EECccCCCC
Confidence            556555443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.75  E-value=0.0018  Score=36.50  Aligned_cols=73  Identities=23%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             EEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEe-CCCCEEEEeCCC
Q psy13945          5 IAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSS-LDQTISAWHTND   71 (86)
Q Consensus         5 ~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~-~~~~i~~~~~~~   71 (86)
                      ++++++++.++...          ...++.++|..+++.+..+.- ......+. ++++. .++... .++.+.+.|..+
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            78899988777642          224799999999999887764 34677888 99988 776555 678899999999


Q ss_pred             CeEEEee
Q psy13945         72 GSLKCNI   78 (86)
Q Consensus        72 ~~~~~~~   78 (86)
                      ++.+..+
T Consensus       332 ~k~i~~i  338 (352)
T TIGR02658       332 GKELSSV  338 (352)
T ss_pred             CeEEeee
Confidence            9888877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.74  E-value=0.0021  Score=36.87  Aligned_cols=73  Identities=22%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             eeEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~--~i~~~~~~~~~~   74 (86)
                      +....|+|||+.++..+.+   ..|.++++.+++... +....+...... +|++..++ +...++  .|.++|+.++..
T Consensus       201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            4677999999887654432   468889988776533 222233334566 89988775 444443  678889877654


Q ss_pred             E
Q psy13945         75 K   75 (86)
Q Consensus        75 ~   75 (86)
                      .
T Consensus       280 ~  280 (430)
T PRK00178        280 S  280 (430)
T ss_pred             E
Confidence            3

>KOG2321|consensus

Probab=97.73  E-value=0.00028  Score=41.69  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++++.-..-++.++....|+-+++..|..+..+......++++. .+...++++|+.++.+..||.+....+..+.
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence            34444344456666677888888888888888887778899999 8999999999999999999999876665554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.71  E-value=0.0024  Score=36.78  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccc-eEEEE-eCC-C---------------CeE--EEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGE-ILQLV-TAD-D---------------GTL--ISSSLD   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~~~-~~~-~---------------~~~--~~~~~~   61 (86)
                      +.++..+|++++.++.+.-|.|.++|+..+..+.-+++..+. +.-+. ... .               ..+  +-...-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            467899999999999999999999999988887777775542 22222 111 1               122  234567


Q ss_pred             CCEEEEeCCCCeEEEeecC
Q psy13945         62 QTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.|.+|.+++|..+..+.-
T Consensus       390 g~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  390 GILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CeEEEEecCCCCEEEEEEe
Confidence            8899999999988877643

>KOG1064|consensus

Probab=97.69  E-value=4.8e-05  Score=49.85  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         38 KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        38 ~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .+|.+.+++++ .|..+.+++|+.+|.+++||+++.+.++.+
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence            66778889999 899999999999999999999887655544

>KOG2041|consensus

Probab=97.67  E-value=0.0004  Score=42.37  Aligned_cols=71  Identities=25%  Similarity=0.504  Sum_probs=56.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce---------------EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS---------------LASWKGHEGEILQLV-TADDGTLISSSLDQTIS   65 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~   65 (86)
                      ..|+.|+.+..+|++|+.+|.+++..+.+...               -+++.+|+..|.-+- ..+.+.+.+...++.|.
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII   96 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence            46899999999999999999999987643211               135678888888777 77788888999999999


Q ss_pred             EEeCCCC
Q psy13945         66 AWHTNDG   72 (86)
Q Consensus        66 ~~~~~~~   72 (86)
                      +|-+-.|
T Consensus        97 VWmlykg  103 (1189)
T KOG2041|consen   97 VWMLYKG  103 (1189)
T ss_pred             EEeeecc
Confidence            9987444

>KOG1334|consensus

Probab=97.65  E-value=0.00023  Score=41.22  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |..+.|...|..+++++++..+.+||...++....+ .+|...|.... .|  +...+++.+.|+++++-.+.
T Consensus       145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            567889999999999999999999999887776555 45666555444 33  46678899999999987664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.64  E-value=0.003  Score=35.93  Aligned_cols=72  Identities=24%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             eeEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCC--CCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLD--QTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~--~~i~~~~~~~~~~   74 (86)
                      +....|+|||+.++.....   ..+++||+.+++.... ........... +|++..++ +...+  ..|.+|++.++..
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~  270 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL  270 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence            4567899999988765533   4799999887754332 22334455667 88988665 44433  4688888876643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.62  E-value=0.0029  Score=36.73  Aligned_cols=73  Identities=18%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             eeEEEECCCCCEEEEEeC-C--CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQA-S--GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~--~i~~~~~~~~~~   74 (86)
                      +....|+|||+.++..+. +  ..|+++|+.+++... +........... +|++..++ +...++  .|.++|+.+++.
T Consensus       220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence            456799999998775433 2  358888887766432 222222233556 89988775 445555  477778876654


Q ss_pred             E
Q psy13945         75 K   75 (86)
Q Consensus        75 ~   75 (86)
                      .
T Consensus       299 ~  299 (448)
T PRK04792        299 T  299 (448)
T ss_pred             E
Confidence            3

>KOG4497|consensus

Probab=97.61  E-value=0.0011  Score=36.98  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             eeEEEECCCCCEEEEEeCC--CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS--GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +.-++|++|..++++..+.  ..+.+||++..+....+ .+..+|.... .|...-++.+.....+.+|......+
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            3468999999998876543  56899998876654433 3567888888 88888888777777899997754333

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.58  E-value=0.003  Score=34.41  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         41 EGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        41 ~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ...|..+. +|++..+++...+|.|.+|++-.-+..+.+.
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            45688889 9999999999999999999997766555543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.57  E-value=0.0042  Score=35.90  Aligned_cols=75  Identities=16%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             eEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEE-EeC--CCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLIS-SSL--DQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-~~~--~~~i~~~~~~~~~~~   75 (86)
                      ....|+|||+.++.....   ..+.+||..+++...... ....+.... +|++..++- ...  ...+.++++..++..
T Consensus       330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            467899999987755432   468899988776643322 223445566 889887763 332  356888888777654


Q ss_pred             Eee
Q psy13945         76 CNI   78 (86)
Q Consensus        76 ~~~   78 (86)
                      ...
T Consensus       409 ~Lt  411 (428)
T PRK01029        409 KIV  411 (428)
T ss_pred             Eee
Confidence            443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.45  E-value=0.0065  Score=35.05  Aligned_cols=73  Identities=12%  Similarity=0.010  Sum_probs=43.4

Q ss_pred             eEEEECCCCCEEEEEe-CCCeEEEEEc--cCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC---CEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQ-ASGVLTLLDL--RTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ---TISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~---~i~~~~~~~~~~~   75 (86)
                      ....|+|||+.++..+ ..+...+|..  ..++.. .+........... +|++..++..+.++   .|.+||+.++...
T Consensus       287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        287 TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            3568999999776544 3455555544  444332 2221222223456 89999887655433   6899998877644


Q ss_pred             E
Q psy13945         76 C   76 (86)
Q Consensus        76 ~   76 (86)
                      .
T Consensus       366 ~  366 (427)
T PRK02889        366 A  366 (427)
T ss_pred             E
Confidence            3

>KOG2315|consensus

Probab=97.45  E-value=0.0044  Score=36.63  Aligned_cols=77  Identities=17%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             CeeEEEECCCCCEEE--EEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGSWIA--IGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~~~   74 (86)
                      ||.++.|+++++-++  -|-.--.+.++|++ +.++..+  ..++-..+. +|.++.++.++.+   |.+.+||..+.++
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            689999999996544  46667788898865 3333322  233345666 8999999887754   6899999988776


Q ss_pred             EEeecC
Q psy13945         75 KCNIQG   80 (86)
Q Consensus        75 ~~~~~~   80 (86)
                      +..+..
T Consensus       349 i~~~~a  354 (566)
T KOG2315|consen  349 IAKFKA  354 (566)
T ss_pred             cccccc
Confidence            665543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.44  E-value=0.0061  Score=34.49  Aligned_cols=73  Identities=19%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             ECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCCcc-------ceEEEE-eCCCCeEEEEe-C-CCCEEE
Q psy13945          7 VSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGHEG-------EILQLV-TADDGTLISSS-L-DQTISA   66 (86)
Q Consensus         7 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~~-~~~~~~~~~~~-~-~~~i~~   66 (86)
                      ++||++.++.+.          ++..|.+||..+.+....+.....       .-..+. ++++.+++... . +..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            899998766544          478999999999998877653222       112345 89999887665 3 688999


Q ss_pred             EeCCCCeEEEeec
Q psy13945         67 WHTNDGSLKCNIQ   79 (86)
Q Consensus        67 ~~~~~~~~~~~~~   79 (86)
                      .|+.+++.+..+.
T Consensus       133 vD~~~~kvv~ei~  145 (352)
T TIGR02658       133 VDLEGKAFVRMMD  145 (352)
T ss_pred             EECCCCcEEEEEe
Confidence            9999988777653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.40  E-value=0.006  Score=35.29  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=45.0

Q ss_pred             eEEEECCCCCEEEEEe-CCCeEEEE--EccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCCeE
Q psy13945          3 RCIAVSSSGSWIAIGQ-ASGVLTLL--DLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDGSL   74 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~~~   74 (86)
                      ...+|+|||+.|+..+ .++...+|  ++.. +.....+......+.... +|++..++....+   ..|.+||+.+++.
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            3578999998766544 45544444  4432 222333433334555667 8999988754432   4688999887765


Q ss_pred             EE
Q psy13945         75 KC   76 (86)
Q Consensus        75 ~~   76 (86)
                      ..
T Consensus       364 ~~  365 (428)
T PRK01029        364 YQ  365 (428)
T ss_pred             EE
Confidence            43

>KOG4649|consensus

Probab=97.40  E-value=0.005  Score=33.63  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=50.2

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE--eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV--TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |.+++.|.-.+.+++.+.++++..-.+..- +.|.+-+  .+++..+.+++.|+.....|+++..++...+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            455777777888888888888665555542 2222222  6889999999999999999999888877654

>KOG4532|consensus

Probab=97.38  E-value=0.0063  Score=33.31  Aligned_cols=75  Identities=15%  Similarity=0.043  Sum_probs=52.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceE-----EEEeCCccceEEEE-eCCCC--eEEEEeCCCCEEEEeCCCCeEE
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-----ASWKGHEGEILQLV-TADDG--TLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~-~~~~~--~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +..|+.....++++..|+++.+||++.....     ..-..|++.+.... ++.+.  +++-.-.-+.+.+.|++++...
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            5678888889999999999999999854332     12223677888777 76544  3344445567899999988655


Q ss_pred             Eee
Q psy13945         76 CNI   78 (86)
Q Consensus        76 ~~~   78 (86)
                      +.+
T Consensus       288 q~I  290 (344)
T KOG4532|consen  288 QVI  290 (344)
T ss_pred             eEE
Confidence            544

>KOG1409|consensus

Probab=97.37  E-value=0.0059  Score=34.37  Aligned_cols=72  Identities=25%  Similarity=0.475  Sum_probs=50.6

Q ss_pred             EEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe-EEEeecCCCCCC
Q psy13945         14 IAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS-LKCNIQGPTEPV   85 (86)
Q Consensus        14 ~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v   85 (86)
                      .+.|...+.+.+..+.  .-..+.++.+|...+.++. .+....+.++..|..+.+||+--.+ ....+.+|.+.|
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV  243 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV  243 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence            3345555555544432  2344677888999999999 8889999999999999999986433 345566676554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.37  E-value=0.00082  Score=36.45  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=33.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH   40 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   40 (86)
                      |..+..+|||.++++...+|.|.+|++..-.....+.-+
T Consensus       232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            567899999999999999999999999877766666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.0084  Score=34.63  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             eEEEECCCCCEEE-EEeCCC--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC-C--CCEEEEeCCCCeE
Q psy13945          3 RCIAVSSSGSWIA-IGQASG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL-D--QTISAWHTNDGSL   74 (86)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-~--~~i~~~~~~~~~~   74 (86)
                      ...+|+|||+.++ +.+.++  .|+++|+.+++. ..+..+........ +|++..++..+. +  ..|.+++...+..
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            4578999998765 445444  477778776654 33443444445566 889888765442 2  3677888765543

>KOG1354|consensus

Probab=97.36  E-value=0.0042  Score=34.99  Aligned_cols=70  Identities=20%  Similarity=0.340  Sum_probs=49.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEcc-CCceEEEEeCCcc------------ceE---EEE-eCCCCeEEEEeCCCCE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLR-TGTSLASWKGHEG------------EIL---QLV-TADDGTLISSSLDQTI   64 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~------------~v~---~~~-~~~~~~~~~~~~~~~i   64 (86)
                      |..+.|+.+|+++.+.+ --+|++||+. ..++..+...|..            .|.   ... +.+...+++|+....+
T Consensus       275 ISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f  353 (433)
T KOG1354|consen  275 ISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF  353 (433)
T ss_pred             hhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence            67899999999998764 5689999983 4444444443321            121   223 4566689999999999


Q ss_pred             EEEeCCCC
Q psy13945         65 SAWHTNDG   72 (86)
Q Consensus        65 ~~~~~~~~   72 (86)
                      ++++...|
T Consensus       354 rvf~~~~g  361 (433)
T KOG1354|consen  354 RVFNLARG  361 (433)
T ss_pred             EEecCCCC
Confidence            99996544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.35  E-value=0.016  Score=37.33  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             eEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeC-------------C--------ccceEEEE-eCCCCeEEEEe
Q psy13945          3 RCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKG-------------H--------EGEILQLV-TADDGTLISSS   59 (86)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~--------~~~v~~~~-~~~~~~~~~~~   59 (86)
                      ..++++|++. ++++...++.|++||..++.......+             .        -..-..+. .+++..+++-.
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs  822 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS  822 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC
Confidence            4688999987 556666678999999876543211100             0        00123566 78888888999


Q ss_pred             CCCCEEEEeCCCCeEEE
Q psy13945         60 LDQTISAWHTNDGSLKC   76 (86)
Q Consensus        60 ~~~~i~~~~~~~~~~~~   76 (86)
                      .++.|++||..++....
T Consensus       823 ~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        823 YNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             CCCEEEEEECCCCeEEE
Confidence            99999999998776553

>KOG4497|consensus

Probab=97.35  E-value=0.006  Score=34.30  Aligned_cols=71  Identities=13%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             EEEECCCCCEEE-EEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeE
Q psy13945          4 CIAVSSSGSWIA-IGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~   74 (86)
                      -+.|..|..+++ ....++.+.+|++...+--.........+.++. +|+++.+ .+...+-.|.+|.+.+.++
T Consensus        53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             heeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            355666665544 455577899999876555556665566788888 9999665 5677899999999876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.31  E-value=0.01  Score=34.28  Aligned_cols=72  Identities=11%  Similarity=0.057  Sum_probs=44.5

Q ss_pred             eEEEECCCCCEEEEEe-CCCe--EEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQ-ASGV--LTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~~~~   75 (86)
                      ...+|+|||+.++..+ ..+.  ++++++..++... +........... +|++..++....+   ..|.+|++.++...
T Consensus       295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            3578999999877655 3444  6666766555322 222222233566 8999888654332   36889998777654

>KOG2139|consensus

Probab=97.29  E-value=0.006  Score=34.61  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTIS   65 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~   65 (86)
                      ++-+.|+||+..++++..|...++|+........++.-..+.|.... +|+|..++ +.+....+.
T Consensus       241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            34689999999999999999999996443333333333344677767 78877664 444444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.20  E-value=0.012  Score=33.31  Aligned_cols=72  Identities=18%  Similarity=0.237  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccce-EEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEI-LQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (86)
                      ++..++.++.++.+..+|..+++.+-......... .+. ...+..++.++.++.+.++|..+++.+..+.-+.
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp-~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP-AVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC-EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            34556666777888888877776543321111111 111 1235677788899999999999999887776443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314|consensus

Probab=97.12  E-value=0.0036  Score=37.24  Aligned_cols=74  Identities=16%  Similarity=0.282  Sum_probs=50.8

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC-----------CCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL-----------DQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-----------~~~i~~~~~~   70 (86)
                      +-+.|||.|.++++-...| |.+|--..-..+.++. | ..|..+. +|+...+++-+.           ...+++||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4578999999999876554 5566543333333433 2 3466778 899999988652           2579999999


Q ss_pred             CCeEEEeec
Q psy13945         71 DGSLKCNIQ   79 (86)
Q Consensus        71 ~~~~~~~~~   79 (86)
                      +|.....|.
T Consensus       291 tG~lkrsF~  299 (698)
T KOG2314|consen  291 TGLLKRSFP  299 (698)
T ss_pred             ccchhccee
Confidence            997666554

>KOG2079|consensus

Probab=97.11  E-value=0.002  Score=40.83  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   84 (86)
                      +..++.++..|.+...|.... .....-..-+++|.+++ +.++..++.|-.+|.|.+||...++.++.+..|..+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            345667777777776664321 11111122357899999 888999999999999999999998888877655443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.11  E-value=0.017  Score=32.95  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             EEEECCCCCEEEEEeC-CC--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC---CEEEEeCCCCeE
Q psy13945          4 CIAVSSSGSWIAIGQA-SG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ---TISAWHTNDGSL   74 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~---~i~~~~~~~~~~   74 (86)
                      ...|++|++.++..+. .+  .+++++...++. ..+........... +|++..++....+.   .|.++++.++..
T Consensus       282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             CEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            4678999987765443 33  577778766554 33333334445566 88888887666554   678888876543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190|consensus

Probab=97.06  E-value=0.00045  Score=41.04  Aligned_cols=53  Identities=25%  Similarity=0.557  Sum_probs=42.9

Q ss_pred             EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-------CeEEEeecCCCCCCC
Q psy13945         34 LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND-------GSLKCNIQGPTEPVH   86 (86)
Q Consensus        34 ~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~v~   86 (86)
                      +..+.+|+.+|..+. -.+..-+++++.|.++++|.++.       ..|.+++..|..+|+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~  788 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH  788 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc
Confidence            456678888888888 67788899999999999998863       358888888887664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.04  E-value=0.022  Score=32.87  Aligned_cols=70  Identities=23%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             EEEECCCCCEEE-EEeCCC--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe-CC--CCEEEEeCCCCeE
Q psy13945          4 CIAVSSSGSWIA-IGQASG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS-LD--QTISAWHTNDGSL   74 (86)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~--~~i~~~~~~~~~~   74 (86)
                      ...|+|||+.++ +...++  .|+++|..+++.. .+..+........ +|++..++..+ .+  ..|..+++.+++.
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            578999998776 444444  6888898876643 3333333444556 78888765443 33  3577777766653

>KOG4640|consensus

Probab=97.03  E-value=0.0026  Score=38.13  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=29.7

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS   36 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   36 (86)
                      .+++|.|||++++.|-.||+|++.|..++..+..
T Consensus        66 ~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   66 ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            3899999999999999999999999987765443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.03  E-value=0.0061  Score=37.87  Aligned_cols=61  Identities=23%  Similarity=0.393  Sum_probs=43.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCCCCEEE
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLDQTISA   66 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~   66 (86)
                      |++-..+ -+|+.|+.+|.|++||. .++...+ +.+-..+|..+. +.+|.+++..+....+.+
T Consensus       582 ~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi  644 (794)
T PF08553_consen  582 CFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLI  644 (794)
T ss_pred             EEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEE
Confidence            4444443 45788999999999994 4443433 345678999999 999999877665554443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0309|consensus

Probab=97.02  E-value=0.00087  Score=41.05  Aligned_cols=70  Identities=23%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE--eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV--TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.++|+.....+.+.+...-+++||.+.+ .++..+++|...+..++  ......+.+.+.|+++..|++...
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            46788887777777777889999998865 45677788877777777  345667789999999999998643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.88  E-value=0.0064  Score=24.28  Aligned_cols=32  Identities=3%  Similarity=0.021  Sum_probs=27.3

Q ss_pred             ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945         41 EGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus        41 ~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ...|.++. +|...+++.+..++.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            34688888 999999999999999999998 444

>KOG3914|consensus

Probab=96.85  E-value=0.0059  Score=34.69  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee-cCCCCC
Q psy13945         35 ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI-QGPTEP   84 (86)
Q Consensus        35 ~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~   84 (86)
                      ....+|-..+..++ +||.+.++++..|..|++-.+..-..+..| -||+.-
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF  196 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF  196 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh
Confidence            34457778888999 999999999999999998876543333332 345543

>KOG1354|consensus

Probab=96.84  E-value=0.025  Score=32.10  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC-Cc----eEEEEeCCc------------cceEEEE-eC--CCCeEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT-GT----SLASWKGHE------------GEILQLV-TA--DDGTLISSSLD   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~------------~~v~~~~-~~--~~~~~~~~~~~   61 (86)
                      |.++.|..+|.++++|+.+|.+.++.... .+    ....++.|.            .+|..+. .+  +...++....|
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            67899999999999999999999986432 22    222333332            2455566 43  45678888999


Q ss_pred             CCEEEEeCCC
Q psy13945         62 QTISAWHTND   71 (86)
Q Consensus        62 ~~i~~~~~~~   71 (86)
                      .++++|-++.
T Consensus       108 ktiKlWKi~e  117 (433)
T KOG1354|consen  108 KTIKLWKIRE  117 (433)
T ss_pred             cceeeeeeec
Confidence            9999998754

>KOG4190|consensus

Probab=96.81  E-value=0.0011  Score=39.48  Aligned_cols=75  Identities=35%  Similarity=0.668  Sum_probs=57.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEE-EeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISA-WHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~   76 (86)
                      +.+++..+.|+.++.+-..|.+.+.|.++++++..++...-....++.|..+.++....|+.+.+ |...++....
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeee
Confidence            56888889999999999999999999999999888876554444444567777777888888887 8766554433

>KOG1275|consensus

Probab=96.70  E-value=0.036  Score=35.23  Aligned_cols=75  Identities=12%  Similarity=0.096  Sum_probs=56.8

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      ++..++.|+....+..+|+.+.+......-....+.-+ ..+++.+.+|...|+|.+-|.++.+.++++.+|++.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im-R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM-RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEE-EecCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence            34556777777778888888777655544333334333 5678899999999999999999999999999998765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.69  E-value=0.023  Score=29.85  Aligned_cols=68  Identities=22%  Similarity=0.299  Sum_probs=46.0

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ++..+++++.++.+..+|..+++..-....... +.......+..++.+..++.+..+|..+|+.+...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccceeeecccccccccceeeeEecccCCcceeeee
Confidence            456677778899999999999988655553221 11101123445555557779999999999988774

...

>KOG3617|consensus

Probab=96.65  E-value=0.003  Score=39.57  Aligned_cols=69  Identities=16%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      +++++|+|..-.++.|=.-|.+.+|...+.+.......|.-.+..+. +++|..++++..-+.+.+|.+.
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            35788999877788888888899998766655444456888899999 9999999999999999999775

>KOG1912|consensus

Probab=96.58  E-value=0.015  Score=36.25  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC------------CCeEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD------------DGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~------------~~~~~~~~~~~~i~~~~~~   70 (86)
                      ++.|++.| +|+-|+ ...+.+.|..+.+.+..+.-|+..|..+. .|.            ...++++...|.|.+||..
T Consensus        20 A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             ccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            45666644 455554 55788889888888888888888888876 431            2235677788999999998


Q ss_pred             CCeEEEeecCCCCCC
Q psy13945         71 DGSLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~~~~~~~v   85 (86)
                      .+..+..+..|.+.+
T Consensus        98 ~~s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSV  112 (1062)
T ss_pred             hhhhhhhhcCCCcch
Confidence            877776666665543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.56  E-value=0.026  Score=33.45  Aligned_cols=78  Identities=12%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC---------------CCCE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL---------------DQTI   64 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~---------------~~~i   64 (86)
                      |+..+++||.|.+++... ..-|.+|.-.....+..+..  ..|..+. +|.+..+.+=..               +..+
T Consensus        34 p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          34 PVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             chhheeecCcchheehhh-ccceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            456788999999988765 34577777665554444442  3456666 787777776432               3369


Q ss_pred             EEEeCCCCeEEEeecCC
Q psy13945         65 SAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~~~   81 (86)
                      .+||+.++..+..+.+.
T Consensus       111 ~vwd~~sg~iv~sf~~~  127 (561)
T COG5354         111 FVWDIASGMIVFSFNGI  127 (561)
T ss_pred             eEEeccCceeEeecccc
Confidence            99999999988877653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.43  E-value=0.015  Score=22.81  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=24.7

Q ss_pred             CeeEEEECCCC---CEEEEEeCCCeEEEEEccC
Q psy13945          1 LIRCIAVSSSG---SWIAIGQASGVLTLLDLRT   30 (86)
Q Consensus         1 ~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~   30 (86)
                      ++.++.|+|+.   .+++.+-..+.+.++|++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999855   4888888889999999874

It contains a characteristic DLL sequence motif.

>KOG4714|consensus

Probab=96.41  E-value=0.0019  Score=34.98  Aligned_cols=43  Identities=7%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             cceEEEE-eCCCC-eEEEEeCCCCEEEEeCCCCeEE-EeecCCCCC
Q psy13945         42 GEILQLV-TADDG-TLISSSLDQTISAWHTNDGSLK-CNIQGPTEP   84 (86)
Q Consensus        42 ~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~   84 (86)
                      ..|.++. +|..+ .+++|+.++.+.+||.++.... ..+..|...
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~  225 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE  225 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh
Confidence            3478888 88655 5567888999999999886433 344555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.41  E-value=0.08  Score=31.01  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             EEEECCCCCEEEE-EeCCCe--EEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe-CC--CCEEEEeCCCCeEE
Q psy13945          4 CIAVSSSGSWIAI-GQASGV--LTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS-LD--QTISAWHTNDGSLK   75 (86)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~--~~i~~~~~~~~~~~   75 (86)
                      ...|+|||+.++. .+.++.  |+++|+.+++.. .+..+........ +|++..++..+ .+  ..+.+++..+++..
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            5689999987654 455554  777787766543 3333333345566 78888775443 33  35666677666543

>KOG0309|consensus

Probab=96.39  E-value=0.027  Score=35.08  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccCC-ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEe
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRTG-TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~   77 (86)
                      |+.+-|++..+ .+++.+-+..+..||.+.. .....+..-...-..+. ......++..+....+++||.+.| .++..
T Consensus       117 itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s  196 (1081)
T KOG0309|consen  117 ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCS  196 (1081)
T ss_pred             eeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEE
Confidence            56667777654 4667777888999998643 33444443233334555 555555566677888999999865 67788


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +++|...|
T Consensus       197 ~K~~vs~v  204 (1081)
T KOG0309|consen  197 LKGHVSSV  204 (1081)
T ss_pred             ecccceee
Confidence            88876654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.21  E-value=0.12  Score=30.97  Aligned_cols=29  Identities=31%  Similarity=0.500  Sum_probs=25.2

Q ss_pred             CCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         51 DDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        51 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +...+++.+.|+++++||+.++.++....
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            66788899999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.13  E-value=0.05  Score=25.86  Aligned_cols=64  Identities=9%  Similarity=0.215  Sum_probs=39.3

Q ss_pred             eeEEEECC---CC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEe
Q psy13945          2 IRCIAVSS---SG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         2 i~~~~~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~   68 (86)
                      |+++++..   || .-++.|++|..|++|+-.  +.+..+. ....+.++.......++-+..+++|-+++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEe
Confidence            45566544   44 568999999999999743  3333333 24566666633335566666666655544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.12  E-value=0.083  Score=29.96  Aligned_cols=58  Identities=21%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEE
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAW   67 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~   67 (86)
                      .+..++.++.++.+.++|..+++.+..+..+...+..--...+..++.++.|+.|..+
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence            3567788889999999999999988777654433222111123457778888887664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.06  E-value=0.11  Score=29.28  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEEcc--CCce--EEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeC--CCC
Q psy13945          2 IRCIAVSSSGSWIAIGQ-ASGVLTLLDLR--TGTS--LASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHT--NDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~--~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~--~~~   72 (86)
                      ...+.++|||++++.+. ....|.++++.  +++.  +.........-..+. +|++.+++.+. .++.|.+|++  .+|
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            35789999999877655 45679999983  3443  233332233356777 89999887666 5668888865  466


Q ss_pred             eEE
Q psy13945         73 SLK   75 (86)
Q Consensus        73 ~~~   75 (86)
                      ...
T Consensus       327 ~l~  329 (345)
T PF10282_consen  327 KLT  329 (345)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=96.00  E-value=0.087  Score=31.86  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=39.5

Q ss_pred             eEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC
Q psy13945          3 RCIAVSSSGSWIAIGQ---ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ   62 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~   62 (86)
                      +.+-|+|.|+.++.+.   ..+.+.++|.........-.......+.+. .|.|+.+++++...
T Consensus       496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence            5788999999877644   467899999774232222122222334566 79999999887544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.98  E-value=0.14  Score=32.94  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             eEEEECCCCCEEEEEeC------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC---CCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWIAIGQA------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL---DQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~---~~~i~~~~~~~~   72 (86)
                      ..++|..||.++++.+-      ...++||+.. |+...+-..-.+--..++ .|+|.++++.-.   ...|.+|. ++|
T Consensus       213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNG  290 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNG  290 (928)
T ss_pred             eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCC
Confidence            36889999999987664      3578999844 655444333333334567 799999887653   34555565 344


Q ss_pred             e
Q psy13945         73 S   73 (86)
Q Consensus        73 ~   73 (86)
                      .
T Consensus       291 L  291 (928)
T PF04762_consen  291 L  291 (928)
T ss_pred             c
Confidence            3

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.91  E-value=0.17  Score=30.22  Aligned_cols=69  Identities=14%  Similarity=0.188  Sum_probs=53.5

Q ss_pred             EEECCCCCEEEEEeCCC-eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          5 IAVSSSGSWIAIGQASG-VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      ..+..+++-++.|..|+ .+-++|..+++. .+....-+.|.++. ++++..++.+.....+.+.|+.++..
T Consensus       365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             EEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            34455666778888888 888999776653 55556678889999 99999999998888888889887753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.86  E-value=0.14  Score=28.72  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEEcc-CCceEEEEeCCccceEEEE-eCCCCeEEEEe------------------
Q psy13945          5 IAVSSSGSWIAIGQA-----SGVLTLLDLR-TGTSLASWKGHEGEILQLV-TADDGTLISSS------------------   59 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~------------------   59 (86)
                      -.|++||+++++.-+     .|.|-|||.. ....+..+..+.-.-..+. .|++..++.+.                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            478999999887543     4679999988 4555666654432223344 56665444432                  


Q ss_pred             CCCCEEEEeCCCCeEEEe
Q psy13945         60 LDQTISAWHTNDGSLKCN   77 (86)
Q Consensus        60 ~~~~i~~~~~~~~~~~~~   77 (86)
                      .+..+-+.|.++|+.+..
T Consensus       136 M~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             cCCceEEEecCCCceeee
Confidence            334566667777776655

>KOG2395|consensus

Probab=95.84  E-value=0.042  Score=32.95  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEE-EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEE
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLA-SWKGHEGEILQLV-TADDGTLISSSLDQTISAW   67 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~   67 (86)
                      ..-+|+.|+.+|.|++||. .+.... .+.+-..+|..+. ..+|.+++..+....+.+.
T Consensus       440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence            3457899999999999996 444433 4566778999999 9999998876666555443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.75  E-value=0.17  Score=28.84  Aligned_cols=58  Identities=24%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             eEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEE-eCCCCEEEEeCCCCeEEEeecC
Q psy13945         22 VLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISS-SLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        22 ~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +|.++|..+++.+.++.- ...+.++. +.+.. .++.. ..++.+.++|..+|+.+..+..
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            588889999998888764 24566787 76544 44443 4578999999999998888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882|consensus

Probab=95.55  E-value=0.055  Score=31.83  Aligned_cols=79  Identities=14%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC------Cce---------EEEEeCCccceEEEE-eCCCCeEEEEeCCCCE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT------GTS---------LASWKGHEGEILQLV-TADDGTLISSSLDQTI   64 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~---------~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i   64 (86)
                      ||.++.+.+-+..+++.+..|.|.-|....      .++         +..+...+....++. +|++..+.+-+.|..|
T Consensus       146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence            577888888888899999999999998652      111         111222234456777 8999999999999999


Q ss_pred             EEEeCCCCeEEEeec
Q psy13945         65 SAWHTNDGSLKCNIQ   79 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~   79 (86)
                      +++..++++..+.+.
T Consensus       226 R~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEID  240 (558)
T ss_pred             EEEEeccchhhhhhh
Confidence            999999998777664

>KOG2444|consensus

Probab=95.54  E-value=0.078  Score=28.45  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCc-cceEEEE-eCCCCeEEEE--eCCCCEEEEeCCC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHE-GEILQLV-TADDGTLISS--SLDQTISAWHTND   71 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~~~~~~~--~~~~~i~~~~~~~   71 (86)
                      ++.+..++..++.++.|+....+.+.....|+ ..+.... ......+...  +.+..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44578889999999999998888776655555 3333333 4455566555  7777888887753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.52  E-value=0.044  Score=32.84  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=26.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT   30 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   30 (86)
                      .+.++|+|+|..++.++..|.+.+||..-
T Consensus       302 P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  302 PTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            45789999999999999999999999763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.43  E-value=0.18  Score=26.94  Aligned_cols=77  Identities=19%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             eeEEEECCCCCEE-EEEeCCCeEEEEEccCC-c-eE--EEE---eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWI-AIGQASGVLTLLDLRTG-T-SL--ASW---KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~-~~--~~~---~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      .+.++|+||++.+ ++-+..+.|..++.... . ..  ..+   .......-.+. ..++.++++....+.|.+++.. |
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G  214 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G  214 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c
Confidence            3579999999865 46677788998887532 2 21  122   11112245566 7788888888889999999976 7


Q ss_pred             eEEEeec
Q psy13945         73 SLKCNIQ   79 (86)
Q Consensus        73 ~~~~~~~   79 (86)
                      +.+..+.
T Consensus       215 ~~~~~i~  221 (246)
T PF08450_consen  215 KLLREIE  221 (246)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEc
Confidence            7666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.26  E-value=0.3  Score=28.57  Aligned_cols=73  Identities=15%  Similarity=0.095  Sum_probs=45.2

Q ss_pred             eeEEEECCCCCE-EEE-EeC--CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCC--CCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSW-IAI-GQA--SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLD--QTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~-~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~--~~i~~~~~~~~~   73 (86)
                      +....|+|||+. ++. ...  ...|+++|+.+++...... ..+...... +|++..++ +...+  ..|.++++..+.
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            356789999974 553 332  3568888988776544332 334444556 89987664 44333  467777877665


Q ss_pred             EE
Q psy13945         74 LK   75 (86)
Q Consensus        74 ~~   75 (86)
                      ..
T Consensus       269 ~~  270 (419)
T PRK04043        269 LT  270 (419)
T ss_pred             EE
Confidence            43

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.22  E-value=0.39  Score=29.70  Aligned_cols=68  Identities=19%  Similarity=0.288  Sum_probs=45.9

Q ss_pred             eEEEECCCCCEEE-EEeCCCeEEEEEccCCce------------EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          3 RCIAVSSSGSWIA-IGQASGVLTLLDLRTGTS------------LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      ..+.++|||++++ ++..+.++.|.|+.+.+.            .....--.++.. .. .+++..+.+--.|.++-.|+
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH-TaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH-TAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce-EEECCCCCEEEeEeecceeEEEe
Confidence            5789999998766 555688999999876542            222222223322 23 45667777788899999999


Q ss_pred             CCC
Q psy13945         69 TND   71 (86)
Q Consensus        69 ~~~   71 (86)
                      +..
T Consensus       403 ~~~  405 (635)
T PRK02888        403 IEA  405 (635)
T ss_pred             hHH
Confidence            864

>KOG2066|consensus

Probab=95.16  E-value=0.19  Score=31.63  Aligned_cols=57  Identities=14%  Similarity=0.274  Sum_probs=39.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-----CCeEEEEeCCCCEEEEe
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-----DGTLISSSLDQTISAWH   68 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-----~~~~~~~~~~~~i~~~~   68 (86)
                      +|.++++++.||++.+-.+.+......+. .+.++.+++ +|+     ...+++|+..+ +-++.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            58999999999999988776666544433 345566777 665     55677887777 54443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.13  E-value=0.21  Score=30.03  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEE
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASW   37 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~   37 (86)
                      +..++++-+.|+++++||+.+++.+...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            6688999999999999999998885443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.05  E-value=0.24  Score=26.38  Aligned_cols=66  Identities=17%  Similarity=0.297  Sum_probs=44.9

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEE-------e-------CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASW-------K-------GHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~-------~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +..+++++.+-..+|.+++||+.+++....-       .       .....|..+. ..+|..+++-+ ++....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457788888899999999999887653221       1       2345666777 77788777654 35667777654


Q ss_pred             Ce
Q psy13945         72 GS   73 (86)
Q Consensus        72 ~~   73 (86)
                      +.
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2066|consensus

Probab=94.97  E-value=0.53  Score=29.86  Aligned_cols=76  Identities=18%  Similarity=0.199  Sum_probs=45.6

Q ss_pred             CeeEEEECCC-----CCEEEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSS-----GSWIAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      |+..++++||     .+.+++|+..| +.++.-.  ..+....+....++|.++. ..+..++=+ .|--++++|...+.
T Consensus       114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~-W~g~lIAWa-nd~Gv~vyd~~~~~  190 (846)
T KOG2066|consen  114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK-WRGNLIAWA-NDDGVKVYDTPTRQ  190 (846)
T ss_pred             cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE-ecCcEEEEe-cCCCcEEEeccccc
Confidence            5678899997     36688888887 6655422  1111223444567777774 234444433 34457888887777


Q ss_pred             EEEeec
Q psy13945         74 LKCNIQ   79 (86)
Q Consensus        74 ~~~~~~   79 (86)
                      .+..+.
T Consensus       191 ~l~~i~  196 (846)
T KOG2066|consen  191 RLTNIP  196 (846)
T ss_pred             eeeccC
Confidence            666554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.93  E-value=0.38  Score=27.98  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             EECCCCCEEE-EEeCCC--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          6 AVSSSGSWIA-IGQASG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         6 ~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|.+||+.++ .+..++  .+.+.|+.+++..+...+......... +++.+.++-......+.-.|+.+.+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            5677886554 444444  577778888877655444322122222 5666665545555677778888765443

>KOG2444|consensus

Probab=94.90  E-value=0.26  Score=26.59  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             CCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-e-CCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCC
Q psy13945         11 GSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-T-ADDGTLISSSLDQTISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (86)
                      +..+.+|..++.+.+|.... +......-.-...+-++. . .++....+++.++.++.|++..++.+.....|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            35577888899999987641 111111111122333332 2 234567788899999999998887777666665

>KOG3621|consensus

Probab=94.73  E-value=0.17  Score=31.39  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCce---EE--EE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTS---LA--SW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~--~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .....+++..+++.|+..+.|.++.+..+..   ..  .+ +.|+..|+++. ++++..+++|...|+|.+-.+..
T Consensus        80 ~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   80 CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            4556677778888899999999997764322   11  11 23567899999 99999999999999988766554

>KOG1912|consensus

Probab=94.71  E-value=0.24  Score=31.41  Aligned_cols=68  Identities=19%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e---CCC-CeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         13 WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T---ADD-GTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        13 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~---~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +|++++..|.|-+||...+..+..+..+..++..+. -   ++. ..++.-....++-+|+..+|..++...+
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence            477888899999999988887777777766665554 2   334 5566677788999999988887776543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.69  E-value=0.38  Score=27.38  Aligned_cols=66  Identities=17%  Similarity=0.301  Sum_probs=41.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC-CceEEEEeCC------------ccceE---EEE-eCCCCeEEEEeCCCCE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT-GTSLASWKGH------------EGEIL---QLV-TADDGTLISSSLDQTI   64 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~------------~~~v~---~~~-~~~~~~~~~~~~~~~i   64 (86)
                      |..+.|+++|++|++.+ --++.+||+.- ..++.+..-|            ...|+   -+. +.+...+++|+.....
T Consensus       283 ISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf  361 (460)
T COG5170         283 ISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF  361 (460)
T ss_pred             hcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence            67889999999988765 56899999863 3334443222            11222   233 4566667777766665


Q ss_pred             EEEe
Q psy13945         65 SAWH   68 (86)
Q Consensus        65 ~~~~   68 (86)
                      .++-
T Consensus       362 giyp  365 (460)
T COG5170         362 GIYP  365 (460)
T ss_pred             eeec
Confidence            5554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.17  E-value=0.59  Score=26.93  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             CCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         52 DGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        52 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..++.+..++.+.+.|..+|+.+....
T Consensus       335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            4556677888999999999998776654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.83  E-value=0.65  Score=26.22  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             eEEEECCC-CCEEEEEeCCC-eEEEEEccCCceEEEEeCCccceEE--EE-eCCCCeEEEEe-----CCCCEEEEeCC-C
Q psy13945          3 RCIAVSSS-GSWIAIGQASG-VLTLLDLRTGTSLASWKGHEGEILQ--LV-TADDGTLISSS-----LDQTISAWHTN-D   71 (86)
Q Consensus         3 ~~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~--~~-~~~~~~~~~~~-----~~~~i~~~~~~-~   71 (86)
                      ..++.+|+ ...++.+.+-| ...++|..+++....+....+.-+.  -. ++++.++++.-     ..+.|-+||.. .
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            46778884 45555666655 4788999999887776654443321  22 78899988754     34689999998 5


Q ss_pred             CeEEEeecCC
Q psy13945         72 GSLKCNIQGP   81 (86)
Q Consensus        72 ~~~~~~~~~~   81 (86)
                      .+.+.++..|
T Consensus        88 ~~ri~E~~s~   97 (305)
T PF07433_consen   88 YRRIGEFPSH   97 (305)
T ss_pred             cEEEeEecCC
Confidence            5666666543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.65  E-value=0.75  Score=26.30  Aligned_cols=71  Identities=20%  Similarity=0.406  Sum_probs=49.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCc-----eEEEEeCCc------------cceEEEE-e-C-CCCeEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGT-----SLASWKGHE------------GEILQLV-T-A-DDGTLISSSLD   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~------------~~v~~~~-~-~-~~~~~~~~~~~   61 (86)
                      |+++.|...|.++++|+..|.+.++......     ....++.|.            .+|..+. . + ....++..+.|
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            6788898889999999999999988754221     122233332            2455565 3 2 34567888899


Q ss_pred             CCEEEEeCCCC
Q psy13945         62 QTISAWHTNDG   72 (86)
Q Consensus        62 ~~i~~~~~~~~   72 (86)
                      .+|++|.+...
T Consensus       109 ktiKlWKiyek  119 (460)
T COG5170         109 KTIKLWKIYEK  119 (460)
T ss_pred             ceeeeeeeecc
Confidence            99999987643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.48  E-value=0.78  Score=26.03  Aligned_cols=69  Identities=19%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             eEEEECCCCCEEEEEeC----CCeEEEEEccCC--ce--EEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCCC
Q psy13945          3 RCIAVSSSGSWIAIGQA----SGVLTLLDLRTG--TS--LASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHTND   71 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~--~~--~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~~   71 (86)
                      ..++++|+++.+++...    .+.|..|.+...  +.  +.........-..+. .+++..++.+. .++.+.++++..
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            45788999999888776    468888887653  33  333332233334566 88988887665 588999999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041|consensus

Probab=93.26  E-value=0.39  Score=30.45  Aligned_cols=68  Identities=9%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE--eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW--KGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      |.-+.|+.+.+.+.+++.+|.|.+|-+-.+.-...+  ...++-|.++. ..+|..+.-...|+.+.+=.+
T Consensus        74 V~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   74 VMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            567889988899999999999999988765432222  12345677787 788888888888877765443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.21  E-value=0.69  Score=27.25  Aligned_cols=42  Identities=7%  Similarity=-0.044  Sum_probs=34.3

Q ss_pred             cceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCC
Q psy13945         42 GEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTE   83 (86)
Q Consensus        42 ~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   83 (86)
                      -.+.++. +|++.+.+....-+.|.++|+..+..++.++|.++
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            3467788 89988888877779999999999888888877654

>KOG1832|consensus

Probab=93.16  E-value=0.34  Score=31.49  Aligned_cols=50  Identities=14%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         36 SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        36 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      .+..++...+|+. +.....++.|...+.|++++..+|.......+|.+.|
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav 1146 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV 1146 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccc
Confidence            3445566677888 8888999999999999999999998888888888765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.92  E-value=0.84  Score=24.78  Aligned_cols=61  Identities=21%  Similarity=0.275  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         8 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ...++.++.|.++| +++++........... ....|..+. -++-..++.-+ |+.+.++++..
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            34577888888888 8888873222222222 222377777 67666655443 48999998764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2114|consensus

Probab=92.84  E-value=1.7  Score=28.11  Aligned_cols=78  Identities=12%  Similarity=0.079  Sum_probs=46.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce-EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ||+++++..++...+.......|.+|.+....+ ...+..+.....|.. ++....+++ +.+..+.+++.....+...+
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc-a~~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC-AGSEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE-ecCceEEEEcCCCcceeeee
Confidence            689999999888744444566788888774442 344566666777766 443332333 33445566665544444444


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       252 ~  252 (933)
T KOG2114|consen  252 E  252 (933)
T ss_pred             c
Confidence            3

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=92.50  E-value=1.2  Score=25.68  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=36.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEe
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWH   68 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +..++.++.++.+...|..+++.+.........+.+--...+..++.++.++.+..++
T Consensus       335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence            3456777888999999988888766554332222211111344666778888877665

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=92.31  E-value=0.25  Score=17.21  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=12.1

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEE
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTL   25 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~   25 (86)
                      .+++..++|+.+++-.....|.+
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEE
Confidence            45555566665555544444443

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG3621|consensus

Probab=92.12  E-value=0.81  Score=28.66  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEE-EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLA-SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      -+++..+.+++.|...|.+++++...++... +..+....+.... +++..+++.++..+.|.++.+..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            3455677899999999999999976555432 2222223333333 66677777777778888777654

>KOG4649|consensus

Probab=92.11  E-value=1.3  Score=24.87  Aligned_cols=35  Identities=23%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH   40 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   40 (86)
                      ...+++.+|.+++.|+..+..|.++...+.+.+..
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcg  134 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG  134 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence            34678999999999999999999888777665543

>KOG1920|consensus

Probab=92.06  E-value=1.8  Score=29.01  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=39.0

Q ss_pred             EEEECCCCCEEEE-----EeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe---CCCCEEEEeC
Q psy13945          4 CIAVSSSGSWIAI-----GQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS---LDQTISAWHT   69 (86)
Q Consensus         4 ~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~---~~~~i~~~~~   69 (86)
                      .+.|.-||.++++     ......+++||.. +..-..-......-.+++ .|.|.++++..   .+..|.++..
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            5889999999887     3334789999965 433211111112223556 67777776543   3446777663

>PRK04043 tolB translocation protein TolB; Provisional

Probab=91.82  E-value=1.7  Score=25.67  Aligned_cols=73  Identities=22%  Similarity=0.102  Sum_probs=41.9

Q ss_pred             eEEEECCCCCEEEE-EeCC--CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe-CC--CCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAI-GQAS--GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS-LD--QTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~--~~i~~~~~~~~~~~   75 (86)
                      ....|+|||+.++. .+.+  ..+.++|+..++.. .+........... +|++..++-.+ ..  ..|.+.++..++..
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            35679999976553 3333  46788887766543 3332222223345 78887665333 22  35777777766553


Q ss_pred             E
Q psy13945         76 C   76 (86)
Q Consensus        76 ~   76 (86)
                      +
T Consensus       315 r  315 (419)
T PRK04043        315 Q  315 (419)
T ss_pred             e
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.77  E-value=1  Score=27.59  Aligned_cols=59  Identities=15%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ..-+++.+++.|-|++||......-..+.+-...|..+. ..+|.+++..+.. .+.+-|+
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            456899999999999999543222233455667888888 8888887655443 4444444

>PRK02888 nitrous-oxide reductase; Validated

Probab=91.19  E-value=2.5  Score=26.51  Aligned_cols=52  Identities=12%  Similarity=0.070  Sum_probs=33.6

Q ss_pred             CeEEEEEccC-----CceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCCe
Q psy13945         21 GVLTLLDLRT-----GTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDGS   73 (86)
Q Consensus        21 ~~v~~~~~~~-----~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~   73 (86)
                      ..|.+.|..+     .+....+. -......+. +|++..++ ++..+..+.+.|+...+
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            4577777665     23333332 233446677 89999876 55678999999987643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.13  E-value=1.3  Score=23.25  Aligned_cols=64  Identities=27%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             CCCEEEEEeCCCe-EEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945         10 SGSWIAIGQASGV-LTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus        10 ~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      ++ .++....++. +.+ |..+++..-  .............++..++..+.++.+.+||.++++....
T Consensus       173 ~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  173 DG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            44 5555555664 555 988887542  2222222221245566666666899999999999988764

...

>KOG4499|consensus

Probab=91.06  E-value=1.6  Score=24.10  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE--eCCCCeEE
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV--TADDGTLI   56 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~   56 (86)
                      ++...+|.+.++.-+.+++...|..+++.+..+.-...+++|..  -++-..++
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~y  270 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILY  270 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEE
Confidence            34456788888888899999999999999988887788888877  24444443

>KOG1645|consensus

Probab=90.87  E-value=0.52  Score=27.65  Aligned_cols=47  Identities=15%  Similarity=0.058  Sum_probs=35.3

Q ss_pred             EEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945         35 ASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        35 ~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      .-+..+...|..++ +|... ++..++.+.+|.+.|+++..++..+..+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~  235 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY  235 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence            33344556788888 78766 5678899999999999988777766554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.49  E-value=0.52  Score=17.47  Aligned_cols=16  Identities=25%  Similarity=0.254  Sum_probs=10.7

Q ss_pred             eEEEECCCCCEEEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQ   18 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~   18 (86)
                      ....|+|||+.|+-.+
T Consensus        12 ~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen   12 GSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             EEEEE-TTSSEEEEEE
T ss_pred             cCEEEecCCCEEEEEe
Confidence            4678999998766443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.48  E-value=2.7  Score=25.67  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=36.1

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.+.-+|+.+++..=..........+...-.+..++.+..++.++++|.++|+.+..++-
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            456777777776543322111111111111344566677899999999999999887753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0882|consensus

Probab=90.23  E-value=0.098  Score=30.88  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             CCCEEEEEeCCCeEEEEEccC--C-ceEEEEeCCccceEEEE-eCCCCeEEEEeC-CCCEEEEeCCCC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRT--G-TSLASWKGHEGEILQLV-TADDGTLISSSL-DQTISAWHTNDG   72 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~   72 (86)
                      ...++.+++.|+.++.|--..  + +.+..+..|...+.++. +.++..+.+.+. |+.++++|+.+-
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            457889999999999996332  2 22345567778888888 888888888777 999999987653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.13  E-value=2.4  Score=24.61  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             eEEEECCCCCEEEEE-----eCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEE
Q psy13945          3 RCIAVSSSGSWIAIG-----QASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISS   58 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~   58 (86)
                      ....++||+++++.+     ++...++++|+.+++.+.. +....  ...+. .+++..++-.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEE
Confidence            357889999987743     2234699999999876542 22211  12366 6776665433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=90.13  E-value=2.5  Score=24.83  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--------ccceEEEE-e---C--CC---CeEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--------EGEILQLV-T---A--DD---GTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~v~~~~-~---~--~~---~~~~~~~~~~~   63 (86)
                      +|++++.+ |--+++.|..+|.+.+.|++....+..-...        ...+.++. .   .  ++   ..++.|...+.
T Consensus        88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            46778875 5678899999999999999876665542211        12344443 2   1  22   34667788888


Q ss_pred             EEEEeCC
Q psy13945         64 ISAWHTN   70 (86)
Q Consensus        64 i~~~~~~   70 (86)
                      +.+|.+.
T Consensus       167 v~~fkIl  173 (395)
T PF08596_consen  167 VLTFKIL  173 (395)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888664

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00564 PQQ beta-propeller repeat

Probab=89.97  E-value=0.52  Score=16.63  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=19.5

Q ss_pred             eEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         54 TLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        54 ~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .++.+..++.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            4666778899999999888877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=89.57  E-value=3.3  Score=25.31  Aligned_cols=69  Identities=13%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CeeEEEECCCCCEEE--EEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIA--IGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~   72 (86)
                      +|...+|.|++..++  .|-..-.+.++|++.. +.  +-...++-..+. +|..++++.++.+   +.+-+|+....
T Consensus       276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            578899999876544  4567778888887644 22  222222223444 6778888776655   46778876654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.45  E-value=2.6  Score=25.04  Aligned_cols=68  Identities=19%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             EEEECCCCCEEE-EEeCCCe--EEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCC--EEEEeCCCC
Q psy13945          4 CIAVSSSGSWIA-IGQASGV--LTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQT--ISAWHTNDG   72 (86)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~--i~~~~~~~~   72 (86)
                      ..+|+|||+.++ +...++.  +++.|+..+.... +....+.-..-. +|++..++ ..+..+.  |.+.+...+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            357899997655 5555555  5566666555322 322222112333 68888876 4444444  444455444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.41  E-value=2.7  Score=24.05  Aligned_cols=67  Identities=13%  Similarity=0.161  Sum_probs=41.8

Q ss_pred             CCCCCEEEEEeC---------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          8 SSSGSWIAIGQA---------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         8 ~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      |||+++++...+         .+...++|+.+++....... ...+.... +|++..++-.. ++.|.+.+..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            577877665322         34678889887665333222 45566677 89988876554 5678888877775444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.35  E-value=3.8  Score=25.78  Aligned_cols=59  Identities=15%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccceEEEE---eCCCCeEEEEeCCCCEEEEe
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLV---TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~~~~~~~i~~~~   68 (86)
                      -+...+..+....+.+||...+.....-. ...+.|..++   .|+++.+++.+..+.|.++.
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            34444455556789999988766433222 3467788887   38899999999999888774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3616|consensus

Probab=89.20  E-value=3.1  Score=27.12  Aligned_cols=32  Identities=13%  Similarity=0.285  Sum_probs=26.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS   33 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   33 (86)
                      ++++.-+|.++.++.+..|+.+.+++......
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence            45667789999999999999999999765443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.03  E-value=3.5  Score=24.84  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEeCCcc------ceEEEE-eCCC-CeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         12 SWIAIGQASGVLTLLDLRTGTSLASWKGHEG------EILQLV-TADD-GTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      ..++.++.++.+..+|..+++..=.......      .+..-- ...+ ..++.+..++.+..+|.++|+.+..+..
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            4455666788999999888876533322111      010000 1123 5666777899999999999998877643

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.00  E-value=3.4  Score=24.75  Aligned_cols=55  Identities=11%  Similarity=0.224  Sum_probs=32.9

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      |.++...+.+ .+.+||..+++.+......  .|..+. ++++..++-.+ +..+.+++.
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t-~~~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT-KDSIYILKY  172 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE--S-SEEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-CCeEEEEEe
Confidence            6666665544 8999999998888877654  367777 88888776665 446666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.98  E-value=2  Score=23.06  Aligned_cols=27  Identities=11%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945         50 ADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus        50 ~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      .++.+++.-..++.+++||+.+++++.
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            456778888999999999998876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.54  E-value=4.7  Score=25.80  Aligned_cols=71  Identities=24%  Similarity=0.283  Sum_probs=46.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccC---------Cce--EEE-E--------eCCccceEEEE-eCC---CCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRT---------GTS--LAS-W--------KGHEGEILQLV-TAD---DGTLIS   57 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~--~~~-~--------~~~~~~v~~~~-~~~---~~~~~~   57 (86)
                      |..+.++++|.+++..+..+...+.--+.         ++.  ..+ .        ......|..+. +|.   +..++.
T Consensus        87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v  166 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV  166 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence            67889999999988877665544432111         111  111 1        11223566777 764   678889


Q ss_pred             EeCCCCEEEEeCCCC
Q psy13945         58 SSLDQTISAWHTNDG   72 (86)
Q Consensus        58 ~~~~~~i~~~~~~~~   72 (86)
                      -..|+.+++||+...
T Consensus       167 Ltsdn~lR~y~~~~~  181 (717)
T PF10168_consen  167 LTSDNTLRLYDISDP  181 (717)
T ss_pred             EecCCEEEEEecCCC
Confidence            999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.52  E-value=0.82  Score=17.01  Aligned_cols=31  Identities=16%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             CCCCEEEE-EeCCCeEEEEEccCCceEEEEeC
Q psy13945          9 SSGSWIAI-GQASGVLTLLDLRTGTSLASWKG   39 (86)
Q Consensus         9 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~   39 (86)
                      |+++.++. ...++.|.++|..+++.......
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            46665554 44578899999887777665543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3617|consensus

Probab=88.21  E-value=1.3  Score=28.89  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=26.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR   29 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   29 (86)
                      +|..+.|+++|..+.+++.-|.+.+|...
T Consensus       103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            57789999999999999999999999765

>PF01011 PQQ: PQQ enzyme repeat family

Probab=88.21  E-value=0.87  Score=16.95  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=21.1

Q ss_pred             EEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         55 LISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        55 ~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +..+..++.+...|.++|+.+..+..
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            34558899999999999999887753

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=88.12  E-value=3.8  Score=24.17  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce-------------------------------------------EEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-------------------------------------------LASW   37 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------------~~~~   37 (86)
                      .|+.+.|+++..-++.+...|.+.+|.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            378899999877788888889988885431100                                           0011


Q ss_pred             eCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945         38 KGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus        38 ~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      ....++|.+++..+--.++.|..++.+.+.|+|....+..
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEee
Confidence            2234567777644666777888999999999987766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.08  E-value=3.3  Score=23.50  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             eEEEECCCCCEEEEEeC-CCeEEEEEccC--CceEE-----EEeCCccceEEEE-eCCCCeEEEEeCCC-CEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWIAIGQA-SGVLTLLDLRT--GTSLA-----SWKGHEGEILQLV-TADDGTLISSSLDQ-TISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~~-----~~~~~~~~v~~~~-~~~~~~~~~~~~~~-~i~~~~~~~~   72 (86)
                      +.++||||++.++.+.. ...+.-++...  +....     .+....+.-=.+. ..++.+.+++...+ .|..|+.. +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            57999999976665554 47777777652  11111     1111111111233 44566665544443 78888876 7


Q ss_pred             eEEEeecCC
Q psy13945         73 SLKCNIQGP   81 (86)
Q Consensus        73 ~~~~~~~~~   81 (86)
                      +.+..+.-.
T Consensus       245 ~l~~~i~lP  253 (307)
T COG3386         245 KLLGEIKLP  253 (307)
T ss_pred             cEEEEEECC
Confidence            766665543

>KOG1920|consensus

Probab=87.50  E-value=7.1  Score=26.61  Aligned_cols=65  Identities=18%  Similarity=0.072  Sum_probs=46.5

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAW   67 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~   67 (86)
                      |.++.|..+.+.++.+...|.+.+.|..+..... ...-...|.++. +|+..+++-.....++.+-
T Consensus        71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             eEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence            5677788888888888899999998866544321 122345678888 8999998877776666543

>KOG1916|consensus

Probab=87.16  E-value=0.6  Score=30.42  Aligned_cols=73  Identities=12%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceE----------EEE--eCCCCeEEEEeCCCCEEEEeCC-----C
Q psy13945          9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEIL----------QLV--TADDGTLISSSLDQTISAWHTN-----D   71 (86)
Q Consensus         9 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~----------~~~--~~~~~~~~~~~~~~~i~~~~~~-----~   71 (86)
                      ++.-++..+..++++++........ .-+++|...+.          -+.  +|||..++.+..|+.++.|.+.     .
T Consensus       193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~  271 (1283)
T KOG1916|consen  193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV  271 (1283)
T ss_pred             cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence            3556677888888888776543222 22233433222          223  7999999999999998888763     2


Q ss_pred             CeEEEeecCCC
Q psy13945         72 GSLKCNIQGPT   82 (86)
Q Consensus        72 ~~~~~~~~~~~   82 (86)
                      .+|+...+.|.
T Consensus       272 ~rclhewkphd  282 (1283)
T KOG1916|consen  272 HRCLHEWKPHD  282 (1283)
T ss_pred             HhhhhccCCCC
Confidence            24555555443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=86.76  E-value=7.1  Score=25.87  Aligned_cols=66  Identities=17%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEE----EccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLL----DLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      |.++.+-++...++.+..+|.|.++    +...... .....-...|.+++ +||...++....++++.+-.
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            5577788888888888889999888    4333322 22222456789999 99999998888888776554

>KOG4499|consensus

Probab=86.50  E-value=4  Score=22.70  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             EEEECCCCCE-EEEEeCCCeEEEEE--ccCCce-----EEEEeCCc---cce-EEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSW-IAIGQASGVLTLLD--LRTGTS-----LASWKGHE---GEI-LQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~-~~~~~~~~~v~~~~--~~~~~~-----~~~~~~~~---~~v-~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      .++|+.|... .+.-+.+.++..||  ..++..     +..++...   ... -.+. .-++.++++.-..+++...|..
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            5677766554 44666677887777  444433     33333211   000 0122 3356677777788899999999


Q ss_pred             CCeEEEeecCCCCC
Q psy13945         71 DGSLKCNIQGPTEP   84 (86)
Q Consensus        71 ~~~~~~~~~~~~~~   84 (86)
                      +|+.+.++.-....
T Consensus       242 tGK~L~eiklPt~q  255 (310)
T KOG4499|consen  242 TGKILLEIKLPTPQ  255 (310)
T ss_pred             CCcEEEEEEcCCCc
Confidence            99999888755443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.47  E-value=6.8  Score=25.36  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=44.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccce-------------EEEE-eC--CCCeEEEEeC----------CCCE
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEI-------------LQLV-TA--DDGTLISSSL----------DQTI   64 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-------------~~~~-~~--~~~~~~~~~~----------~~~i   64 (86)
                      +..++.+..|+.+.-.|.++++..-.+.. ++.+             .... .|  .+..++.++.          ++.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45777888899999999999988755422 1111             1112 22  2334444432          5789


Q ss_pred             EEEeCCCCeEEEeec
Q psy13945         65 SAWHTNDGSLKCNIQ   79 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~   79 (86)
                      +-+|.++|+.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999888774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=84.86  E-value=6.1  Score=23.38  Aligned_cols=34  Identities=35%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL   34 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   34 (86)
                      ++..++.||++++++.-..++.+.+...+-.+..
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence            4678999999999998888899988876544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=84.22  E-value=6.2  Score=22.94  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             eeEEEECCCCCEEEEEeCC-CeEEEEEccCCceEE----EEeCCccceEEEE-eCCCCeEEEE-eCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-GVLTLLDLRTGTSLA----SWKGHEGEILQLV-TADDGTLISS-SLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~----~~~~~~~~v~~~~-~~~~~~~~~~-~~~~~i~~~~~~~   71 (86)
                      +....+.|+++++++.+.. -.+.+|++..+....    .++ ....-..+. +|++...... -.+++|.+|.+..
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            4567789999988876543 358888888665421    222 222335677 8999887654 4789999999876

>KOG2114|consensus

Probab=83.60  E-value=10  Score=24.98  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC----CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT----GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      |+.+++.+.+-..+++|-.+|.|..+.-+.    +....-....+++|+.+. ..++...+-......|..+.+.
T Consensus       127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS  201 (933)
T ss_pred             cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence            567888888889999999999998875331    111111122356788877 5555443444455566666665

>PHA02713 hypothetical protein; Provisional

Probab=82.99  E-value=6.2  Score=24.36  Aligned_cols=34  Identities=3%  Similarity=0.023  Sum_probs=24.1

Q ss_pred             eCCCCeEEEEeCCC--CEEEEeCCCCeEEEeecCCC
Q psy13945         49 TADDGTLISSSLDQ--TISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus        49 ~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~   82 (86)
                      ..++..++.|+.++  .+..+|..+.+.......|+
T Consensus       510 ~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        510 LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            34677888888777  67788888777665555454

>KOG2377|consensus

Probab=82.32  E-value=9.2  Score=23.52  Aligned_cols=29  Identities=17%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR   29 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   29 (86)
                      +|.++.|++|++.++....+.++-+++..
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecC
Confidence            57899999999999999999999999874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=82.04  E-value=8.6  Score=23.01  Aligned_cols=67  Identities=21%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             EEECCCCCEEEE-EeCCCe--EEEEEccCCceEE-EEeCCccceEEEE-eCCCCeEEEEeC-CCC--EEEEeCCCCe
Q psy13945          5 IAVSSSGSWIAI-GQASGV--LTLLDLRTGTSLA-SWKGHEGEILQLV-TADDGTLISSSL-DQT--ISAWHTNDGS   73 (86)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~-~~~--i~~~~~~~~~   73 (86)
                      -.|+|||+.++. .+..|.  |.+++.+...... +.......  .-. +|++..++-.+. ++.  +.+.++.++.
T Consensus       287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            468999988664 444555  4444554444322 22222221  444 789998875553 333  5566665544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=81.69  E-value=8.2  Score=22.53  Aligned_cols=71  Identities=20%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             eEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCCeE
Q psy13945          3 RCIAVSSSGSWIAIGQA---SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~   74 (86)
                      ..+++++++..+..+..   +..+.+.|..+.+.......-..+ ..+. .|++..++ +-..++.+.+.+......
T Consensus       119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v  194 (381)
T COG3391         119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV  194 (381)
T ss_pred             ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence            46788999977666555   688888898888877664433334 5666 88888554 445778888888655433

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.29  E-value=11  Score=23.68  Aligned_cols=60  Identities=10%  Similarity=-0.040  Sum_probs=32.7

Q ss_pred             eEEEECCCCCEEEEEeCC-C-----------eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS-G-----------VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISA   66 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~-----------~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~   66 (86)
                      +...|+|||..+.+..+. .           .+.+.++..++...   .....|..+. +|++..++-.. ++++.+
T Consensus       400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            356789997766655432 2           22222332222211   2245688888 99988776443 355555

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.16  E-value=8.6  Score=21.80  Aligned_cols=39  Identities=15%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH   40 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   40 (86)
                      ++++....+|.+|++...-.+|.+.+-.+++.+=.+.+.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            566777788999999998999999998888876555443

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=80.06  E-value=2.6  Score=15.71  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=13.5

Q ss_pred             CCEEEEEeCCCeEEEEEcc
Q psy13945         11 GSWIAIGQASGVLTLLDLR   29 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~   29 (86)
                      +..++.++.++.+..+|.+
T Consensus        21 ~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   21 GGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             TSEEEEE-TTSEEEEEETT
T ss_pred             CCEEEEEcCCCEEEEEeCC
Confidence            4567777788888888864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	86
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1   LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
           ++R +AV   G +I+     G++ L+D  TG  L +++GHE  +  +    +G ++S   
Sbjct: 186 VVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE 244
Query: 61  DQTISAWHTNDGSLKCNIQGP 81
           D+T+  W   +GSLK  I  P
Sbjct: 245 DRTVRIWSKENGSLKQVITLP 265

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1   LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSS 59
            +  + +SS G +   G   G L L DL TGT+   + GH  ++L +  ++D+  ++S S
Sbjct: 88  FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 60  LDQTISAWHT 69
            D+TI  W+T
Sbjct: 148 RDKTIKLWNT 157

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 5   IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQT 63
           + +SS G +   G   G L L DL TGT+   + GH  ++L +  ++D+  ++S S D+T
Sbjct: 69  VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 64  ISAWHT 69
           I  W+T
Sbjct: 129 IKLWNT 134

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2    IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
            + C  +S    ++A G   G + +++L      +S  GH+  +  +  TAD  TLISSS 
Sbjct: 971  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 61   DQTISAWH 68
            D  I  W+
Sbjct: 1031 DSVIQVWN 1038

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2    IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
            + C  +S    ++A G   G + +++L      +S  GH+  +  +  TAD  TLISSS 
Sbjct: 964  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 61   DQTISAWH 68
            D  I  W+
Sbjct: 1024 DSVIQVWN 1031

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 5   IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT 63
           + +SS G +   G   G L L DL  G S   + GH  ++L +  + D+  ++S+S D+T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 64  ISAWHT 69
           I  W+T
Sbjct: 496 IKLWNT 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.86
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.86
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.84
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.84
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.83
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.83
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.83
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.82
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.81
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.81
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.81
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.8
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.8
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.8
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.79
2pm7_B	297	Protein transport protein SEC13, protein transport	99.79
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.78
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.78
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.78
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.78
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.78
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.78
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.78
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.77
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.77
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.77
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.77
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.76
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.76
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.76
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.76
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.75
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.75
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.75
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.75
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.74
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.73
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.73
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.73
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.73
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.73
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.73
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.72
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.72
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.72
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.72
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.71
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.71
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.71
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.71
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.7
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.7
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.7
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.7
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.7
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.69
2pm7_B	297	Protein transport protein SEC13, protein transport	99.69
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.69
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.69
3jro_A	753	Fusion protein of protein transport protein SEC13	99.68
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.68
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.68
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.68
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.68
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.68
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.67
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.67
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.66
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.66
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.66
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.66
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.66
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.66
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.65
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.65
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.65
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.64
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.64
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.64
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.64
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.64
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.64
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.64
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.63
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.63
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.63
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.63
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.62
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.62
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.62
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.62
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.62
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.62
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.61
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.61
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.6
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.6
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.6
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.58
3jro_A	753	Fusion protein of protein transport protein SEC13	99.58
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.58
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.54
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.54
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.43
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.41
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.4
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.38
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.34
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.27
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.16
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.13
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.12
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.09
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.09
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.04
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.04
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.01
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.99
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.59
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.58
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.53
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.47
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.4
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.36
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.34
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.22
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.16
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.15
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.15
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.11
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.06
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.99
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.91
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.91
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.65
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.59
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.75
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.75
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.67
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.39
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.25
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.52
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.2
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.62
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.55
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.1
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.01
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.82
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	93.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.59
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.11
2ece_A	462	462AA long hypothetical selenium-binding protein;	92.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.84
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.53
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.89
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.47
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.93
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	89.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	89.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.29
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	87.74
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.63
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	85.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	85.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	84.24
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	82.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	82.28
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	80.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	80.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	80.11

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.86  E-value=2e-20  Score=98.97  Aligned_cols=85  Identities=18%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.|+.+++||..++.....+..|...+.++. ++++..+++++.|+.|++||+.+++++..+.
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~   94 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            488999999999999999999999999999999899999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus        95 ~h~~~v  100 (304)
T 2ynn_A           95 AHPDYI  100 (304)
T ss_dssp             CCSSCE
T ss_pred             CCCCcE
Confidence            998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.86  E-value=3.4e-20  Score=98.93  Aligned_cols=85  Identities=19%  Similarity=0.377  Sum_probs=80.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.|+.+++||+..++....+.+|...|.++. +|++..+++++.|+.|++||+++++++..+.
T Consensus       208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            478999999999999999999999999999998899999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus       288 ~h~~~v  293 (321)
T 3ow8_A          288 DHQDQV  293 (321)
T ss_dssp             CCSSCE
T ss_pred             CCCCcE
Confidence            998765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.84  E-value=6e-20  Score=100.52  Aligned_cols=85  Identities=19%  Similarity=0.229  Sum_probs=80.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|++++|+|++.++++++.|++|++||..+++....+.+|...|.++. +|++..+++++.|+.|++||+.+++++..+.
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH  189 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence            588999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       190 ~h~~~V  195 (410)
T 1vyh_C          190 GHDHNV  195 (410)
T ss_dssp             CCSSCE
T ss_pred             CCCCCE
Confidence            988665

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.84  E-value=1.1e-19  Score=102.06  Aligned_cols=83  Identities=28%  Similarity=0.479  Sum_probs=76.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|++++|+|||+++++++.|+.|++|| .+++.+..+.+|...|.+++ +|++..+++++.|+.|++||. +++++..+.
T Consensus        18 ~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~   95 (577)
T 2ymu_A           18 SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT   95 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEE
Confidence            489999999999999999999999999 46788889999999999999 999999999999999999995 678888898


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus        96 ~~~~~v  101 (577)
T 2ymu_A           96 GHSSSV  101 (577)
T ss_dssp             CCSSCE
T ss_pred             CCCCCE
Confidence            888765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.84  E-value=2.6e-19  Score=95.50  Aligned_cols=85  Identities=28%  Similarity=0.466  Sum_probs=79.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|.+++|+|+++++++++.++.+++||+.+++....+.+|...|.++. +|++..+++++.|+.|++||++.+.....+.
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~  245 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS  245 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc
Confidence            367899999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       246 ~h~~~v  251 (321)
T 3ow8_A          246 GHASWV  251 (321)
T ss_dssp             CCSSCE
T ss_pred             CCCCce
Confidence            988765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.84  E-value=1.2e-19  Score=98.29  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE-eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +|++++|+|||+++++|+.|+.|++||+.+++.+..+ .+|...|.+++ +|++..+++++.|++|++|++..
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            4789999999999999999999999999999988875 68999999999 99999999999999999999853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.83  E-value=3.9e-19  Score=95.75  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=74.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE----EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA----SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .|.+++|++++ .+++++.+++|++||+.+++...    ...+|...|.++. +|++..+++++.|+.|++||+++++++
T Consensus        84 ~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~  162 (344)
T 4gqb_B           84 GVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL  162 (344)
T ss_dssp             CEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            37899999985 57789999999999998876543    3457999999999 999999999999999999999999999


Q ss_pred             EeecCCCCCC
Q psy13945         76 CNIQGPTEPV   85 (86)
Q Consensus        76 ~~~~~~~~~v   85 (86)
                      ..+.+|.+.|
T Consensus       163 ~~~~~h~~~V  172 (344)
T 4gqb_B          163 SSYRAHAAQV  172 (344)
T ss_dssp             EEECCCSSCE
T ss_pred             EEEcCcCCce
Confidence            9999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.83  E-value=2.7e-19  Score=94.67  Aligned_cols=85  Identities=19%  Similarity=0.361  Sum_probs=77.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~   78 (86)
                      +|.+++|+++++++++++.|+.+++||..+++....+.+|...|.++. +|++..+++++.|+.|++||++++ .....+
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            478899999999999999999999999999999999999999999999 999999999999999999999877 566778


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|...|
T Consensus       137 ~~h~~~v  143 (304)
T 2ynn_A          137 EGHEHFV  143 (304)
T ss_dssp             CCCCSCE
T ss_pred             cccCCcE
Confidence            8887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.83  E-value=1.9e-19  Score=98.52  Aligned_cols=85  Identities=22%  Similarity=0.347  Sum_probs=79.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.|+++++||+.+++....+.+|...|.++. +|++..+++++.|+.|++||++++.++..+.
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  231 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  231 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            478999999999999999999999999999888888999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       232 ~h~~~v  237 (410)
T 1vyh_C          232 GHREWV  237 (410)
T ss_dssp             CCSSCE
T ss_pred             CCCccE
Confidence            887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.82  E-value=1.7e-18  Score=92.15  Aligned_cols=84  Identities=21%  Similarity=0.432  Sum_probs=76.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.|+++++||+.+++....+.+|...|.++. +|++..+++++.|+.+++||++ +.++..+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence            478899999999999999999999999999999999999999999999 9999999999999999999986 56677777


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       146 ~h~~~v  151 (319)
T 3frx_A          146 GHNDWV  151 (319)
T ss_dssp             CCSSCE
T ss_pred             ccCCcE
Confidence            776554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.82  E-value=1.7e-18  Score=91.59  Aligned_cols=85  Identities=22%  Similarity=0.425  Sum_probs=79.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.++.+++|+..+++....+.+|...|.++. +|++..+++++.|+.+++||+++++++..+.
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  104 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK  104 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc
Confidence            478999999999999999999999999999988888899999999999 9999999999999999999999999999998


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       105 ~~~~~v  110 (312)
T 4ery_A          105 GHSNYV  110 (312)
T ss_dssp             CCSSCE
T ss_pred             CCCCCE
Confidence            887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.82  E-value=3.2e-18  Score=90.54  Aligned_cols=85  Identities=21%  Similarity=0.397  Sum_probs=79.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|.+++|+|+++++++++.++.+++||+.+++....+.+|...|.++. +|++..+++++.|+.+++||+++++++..+.
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence            478999999999999999999999999999999999999999999999 9999999999999999999999999999998


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|...|
T Consensus       147 ~~~~~v  152 (312)
T 4ery_A          147 AHSDPV  152 (312)
T ss_dssp             CCSSCE
T ss_pred             CCCCcE
Confidence            887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.81  E-value=2.3e-18  Score=92.78  Aligned_cols=79  Identities=22%  Similarity=0.355  Sum_probs=72.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.+++|+|+++++++++.|++|++||+.+++.+..+.+|...|.++. ++++ ..+++++.|+.|++||++++++...+
T Consensus       129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence            478999999999999999999999999999999999999999999999 8876 47789999999999999998877766


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       209 ~  209 (344)
T 4gqb_B          209 G  209 (344)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.81  E-value=4.9e-18  Score=91.57  Aligned_cols=85  Identities=21%  Similarity=0.371  Sum_probs=77.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|++..+++++.|+++++||+.+++....+.+|...|.++. .|  ++..+++++.|+.+++||+++++++..
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            367899999999999999999999999999999999999999999988 66  467999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.+|...|
T Consensus       236 ~~~h~~~v  243 (354)
T 2pbi_B          236 FETHESDV  243 (354)
T ss_dssp             ECCCSSCE
T ss_pred             ecCCCCCe
Confidence            99988765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.4e-18  Score=91.37  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=74.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC----CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC--e
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT----GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG--S   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~   73 (86)
                      +|.+++|+|+++++++++.|+++++||+..    .+....+.+|...|.++. +|++..+++++.|+.|++|+...+  +
T Consensus       109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~  188 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWE  188 (330)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCee
Confidence            478999999999999999999999999843    244667788999999999 999999999999999999998776  6


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ++..+.+|...|
T Consensus       189 ~~~~~~~h~~~v  200 (330)
T 2hes_X          189 CVAVLNGHEGTV  200 (330)
T ss_dssp             EEEEECCCSSCE
T ss_pred             EEEEccCCCCcE
Confidence            788888888765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.80  E-value=2.9e-18  Score=91.21  Aligned_cols=85  Identities=24%  Similarity=0.432  Sum_probs=73.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCC--e
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDG--S   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~--~   73 (86)
                      +|.+++|+|+++++++++.|+++++||+.++.  ....+.+|...|.++. ++  ++..+++++.|+++++||++++  .
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~   94 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE   94 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence            48899999999999999999999999998764  3567889999999999 65  4889999999999999999876  4


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ....+.+|...|
T Consensus        95 ~~~~~~~h~~~V  106 (316)
T 3bg1_A           95 KSHEHAGHDSSV  106 (316)
T ss_dssp             EEEEECCCSSCC
T ss_pred             EEEEccCCCCce
Confidence            667778887765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.80  E-value=4e-18  Score=90.77  Aligned_cols=85  Identities=24%  Similarity=0.349  Sum_probs=75.6

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccC-----CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRT-----GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|.+++|+|++ +++++++.|+++++|++..     +.....+.+|...|.++. ++++..+++++.|+.|++||+++++
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            47899999965 8999999999999999763     234567889999999999 9999999999999999999999999


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ++..+.+|...|
T Consensus        99 ~~~~~~~h~~~v  110 (319)
T 3frx_A           99 TYQRFVGHKSDV  110 (319)
T ss_dssp             EEEEEECCSSCE
T ss_pred             eeEEEccCCCcE
Confidence            999999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.80  E-value=5.2e-18  Score=90.97  Aligned_cols=85  Identities=19%  Similarity=0.292  Sum_probs=75.5

Q ss_pred             CeeEEEE-----CC-CCCEEEEEeCCCeEEEEEccCC-------ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEE
Q psy13945          1 LIRCIAV-----SS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISA   66 (86)
Q Consensus         1 ~i~~~~~-----~~-~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~   66 (86)
                      +|++++|     ++ +++++++++.|+++++||+...       .....+.+|...|.++. +|++..+++++.|+.+++
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l  102 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL  102 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence            4789999     66 8999999999999999998643       34566788999999999 999999999999999999


Q ss_pred             EeCCCCeEEEeecCCCCCC
Q psy13945         67 WHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~v   85 (86)
                      ||+++++++..+.+|...|
T Consensus       103 wd~~~~~~~~~~~~h~~~v  121 (343)
T 2xzm_R          103 WDLRTGTTYKRFVGHQSEV  121 (343)
T ss_dssp             EETTSSCEEEEEECCCSCE
T ss_pred             EECCCCcEEEEEcCCCCcE
Confidence            9999999999999998765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.79  E-value=1e-17  Score=91.23  Aligned_cols=79  Identities=24%  Similarity=0.447  Sum_probs=73.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |.+++|+|+++++++++.|+.+++||+.+++....+.+|...|.++. +|++..+++++.|+.+++||++++++...+..
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            78999999999999999999999999999998889999999999999 99999999999999999999999988776653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.79  E-value=5.1e-18  Score=89.57  Aligned_cols=85  Identities=16%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC--CceEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCCe--
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDGS--   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~--   73 (86)
                      +|.+++|+|+|+++++++.|+++++||+..  .+....+.+|...|.++. ++  ++..+++++.|++|++||++++.  
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence            478999999999999999999999999864  356788899999999999 65  37899999999999999998763  


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      .+..+.+|...|
T Consensus        91 ~~~~~~~h~~~v  102 (297)
T 2pm7_B           91 QIAVHAVHSASV  102 (297)
T ss_dssp             CCEEECCCSSCE
T ss_pred             EEEEeecCCCce
Confidence            455666676554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.78  E-value=1.8e-17  Score=89.08  Aligned_cols=85  Identities=18%  Similarity=0.342  Sum_probs=73.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC---eE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG---SL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~   74 (86)
                      +|.+++|+|+++++++++.|+.+++|+...+.  ....+.+|...|.++. +|++..+++++.|+.+++||++.+   .+
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  142 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC  142 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence            47899999999999999999999999987653  4677889999999999 999999999999999999999765   45


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+.+|...|
T Consensus       143 ~~~~~~h~~~v  153 (345)
T 3fm0_A          143 VSVLNSHTQDV  153 (345)
T ss_dssp             EEEECCCCSCE
T ss_pred             EEEecCcCCCe
Confidence            66777777654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.1e-17  Score=88.31  Aligned_cols=85  Identities=24%  Similarity=0.308  Sum_probs=68.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC-------CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC-
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT-------GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND-   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~-   71 (86)
                      +|.+++|+|+++++++++.|+++++||...       .+....+.+|...|.++. +|++..+++++.|+.+++||++. 
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            478999999999999999999999999842       344567788999999999 99999999999999999999943 


Q ss_pred             ---CeEEEeecCCCCCC
Q psy13945         72 ---GSLKCNIQGPTEPV   85 (86)
Q Consensus        72 ---~~~~~~~~~~~~~v   85 (86)
                         .+++..+.+|...|
T Consensus       140 ~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X          140 GEEYECISVLQEHSQDV  156 (330)
T ss_dssp             CCCCEEEEEECCCSSCE
T ss_pred             CCCeEEEEEeccCCCce
Confidence               35777888887655

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.78  E-value=2.8e-17  Score=89.54  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=76.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.++.+++||+.+++....+.+|...|.++. +|++..+++++.|+.+++||+++++++..+.
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            478999999999999999999999999999998889999999999999 9999999999999999999999999998887


Q ss_pred             CC
Q psy13945         80 GP   81 (86)
Q Consensus        80 ~~   81 (86)
                      .|
T Consensus       221 ~~  222 (420)
T 3vl1_A          221 RK  222 (420)
T ss_dssp             BT
T ss_pred             cC
Confidence            54

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.78  E-value=1.4e-17  Score=89.41  Aligned_cols=85  Identities=16%  Similarity=0.264  Sum_probs=73.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE---EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC--eE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA---SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG--SL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~   74 (86)
                      .|.+++|+|+++++++++.|++|++||...+....   ...+|...|.++. +|++..+++++.|+.+++|+...+  ++
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            36789999999999999999999999998775432   2257889999999 999999999999999999998866  56


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+.+|...|
T Consensus        98 ~~~~~~h~~~v  108 (345)
T 3fm0_A           98 VTTLEGHENEV  108 (345)
T ss_dssp             EEEECCCSSCE
T ss_pred             EEEccCCCCCc
Confidence            78888898765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.78  E-value=4.1e-17  Score=87.47  Aligned_cols=79  Identities=15%  Similarity=0.250  Sum_probs=73.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.|+.+++||+.++.....+.+|...|.++. +|++..+++++.|+.+++||++.+..+..+.
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            478999999999999999999999999999999899999999999999 9999999999999999999999888776664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.78  E-value=3.2e-17  Score=87.93  Aligned_cols=72  Identities=24%  Similarity=0.467  Sum_probs=67.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.+++|+|++.++++++.|+++++||+.+++....+.+|...|.++. +|++..+++++.|+.|++||+...
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            478999999999999999999999999999999999999999999999 999999999999999999998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.78  E-value=4.1e-17  Score=86.38  Aligned_cols=85  Identities=16%  Similarity=0.380  Sum_probs=74.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC----ceEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCC-
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG----TSLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDG-   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~-   72 (86)
                      +|++++|+|+++++++++.++.+++||+.++    +....+.+|...|.++. +|  ++..+++++.|+.|++||++.+ 
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            5889999999999999999999999999865    35567788999999999 88  5899999999999999999876 


Q ss_pred             --------eEEEeecCCCCCC
Q psy13945         73 --------SLKCNIQGPTEPV   85 (86)
Q Consensus        73 --------~~~~~~~~~~~~v   85 (86)
                              +.+..+.+|...|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v  113 (351)
T 3f3f_A           93 EECSGRRWNKLCTLNDSKGSL  113 (351)
T ss_dssp             CTTSSCSEEEEEEECCCSSCE
T ss_pred             ccccccCcceeeeecccCCce
Confidence                    6677787887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.3e-17  Score=87.54  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|++++|+|+++++++++.++.+++||+.+++....+.+|...|.++. +|++..+++++.|+.|++||+.+++++..+.
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  113 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK  113 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            488999999999999999999999999999999999999999999999 9999999999999999999999998887776

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.77  E-value=2.2e-17  Score=89.96  Aligned_cols=85  Identities=21%  Similarity=0.391  Sum_probs=73.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC------------ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG------------TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAW   67 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~   67 (86)
                      +|.+++|+|+++++++++.|+.+++||+...            .....+.+|...|.++. ++++..+++++.|+.+++|
T Consensus       258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3789999999999999999999999998653            23456778999999999 8999999999999999999


Q ss_pred             eCCCCeEEEeecCCCCCC
Q psy13945         68 HTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v   85 (86)
                      |.++++++..+.+|.+.|
T Consensus       338 d~~~~~~~~~l~~h~~~v  355 (393)
T 1erj_A          338 DKKSGNPLLMLQGHRNSV  355 (393)
T ss_dssp             ETTTCCEEEEEECCSSCE
T ss_pred             ECCCCeEEEEECCCCCCE
Confidence            999999999999998765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.77  E-value=2.4e-17  Score=92.70  Aligned_cols=83  Identities=28%  Similarity=0.473  Sum_probs=76.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+||++++++++.++.+++|| .+++....+.+|...|.++. +|++.++++++.|+.|++||. +++++..+.
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~  546 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  546 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence            478999999999999999999999999 46778888999999999999 999999999999999999995 688899999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus       547 ~h~~~v  552 (577)
T 2ymu_A          547 GHSSSV  552 (577)
T ss_dssp             CCSSCE
T ss_pred             CCCCCE
Confidence            998775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.77  E-value=3.8e-17  Score=88.97  Aligned_cols=85  Identities=16%  Similarity=0.303  Sum_probs=76.5

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCC-------ceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~   70 (86)
                      +|.+++|+| +++++++++.|+.+++||+.++       +....+.+|...|.++. +|++ ..+++++.|+.|++||++
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            478999999 8999999999999999999876       55778889999999999 9997 689999999999999999


Q ss_pred             CCeEEEee--cCCCCCC
Q psy13945         71 DGSLKCNI--QGPTEPV   85 (86)
Q Consensus        71 ~~~~~~~~--~~~~~~v   85 (86)
                      +++++..+  .+|...|
T Consensus       163 ~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             TTEEEEEECTTTCCSCE
T ss_pred             CCCccEEEecCCCCCce
Confidence            99999988  7787654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.77  E-value=2e-17  Score=88.70  Aligned_cols=84  Identities=19%  Similarity=0.465  Sum_probs=76.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.++.|++++. +++++.|+.+++||+.+++....+.+|...|.++. +|++..+++++.|+.+++||++++.+...+.
T Consensus       145 ~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          145 YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            367888888765 78889999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       224 ~h~~~v  229 (340)
T 1got_B          224 GHESDI  229 (340)
T ss_dssp             CCSSCE
T ss_pred             CCcCCE
Confidence            888765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.77  E-value=2.9e-17  Score=86.60  Aligned_cols=82  Identities=13%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .++++|++++ ++++| .|++|++||..+++....+.  +|...|.++. +|++..+++++.|+.|++|++++++++..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            3578999876 66655 58999999999999877665  5667899999 999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|...+
T Consensus       106 ~~h~~~~  112 (318)
T 4ggc_A          106 TSHSARV  112 (318)
T ss_dssp             ECCSSCE
T ss_pred             cCccceE
Confidence            9887643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=3.1e-17  Score=98.54  Aligned_cols=85  Identities=27%  Similarity=0.405  Sum_probs=80.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|.+++|+|+++++++++.++.|++||..+++....+.+|...|.++. +|++..+++++.|+.|++||+.+++++..+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            478999999999999999999999999999999999999999999999 9999999999999999999999999999998


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       697 ~~~~~v  702 (1249)
T 3sfz_A          697 EHSEQV  702 (1249)
T ss_dssp             CCSSCE
T ss_pred             CCCCcE
Confidence            887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.77  E-value=4.9e-17  Score=92.68  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.+++|+|++. .+++++.|+++++||..+++....+.+|...|.++. +|++..+++++.|+.|++||..++++...+
T Consensus       149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  228 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence            478999999987 699999999999999988888888999999999999 999999999999999999999999888887


Q ss_pred             c-------CCCCCC
Q psy13945         79 Q-------GPTEPV   85 (86)
Q Consensus        79 ~-------~~~~~v   85 (86)
                      .       +|.+.|
T Consensus       229 ~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          229 EDDSLKNVAHSGSV  242 (611)
T ss_dssp             BCTTSSSCSSSSCE
T ss_pred             ccccccccccCCCE
Confidence            4       677654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.76  E-value=3.2e-17  Score=95.04  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=80.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.++.|++||..+++....+.+|...|.++. +|++..+++++.|+.|++|++.+++.+..+.
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            478999999999999999999999999999999999999999999999 9999999999999999999999999999998


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus        95 ~~~~~v  100 (814)
T 3mkq_A           95 AHPDYI  100 (814)
T ss_dssp             CCSSCE
T ss_pred             cCCCCE
Confidence            888765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.76  E-value=4.5e-17  Score=87.88  Aligned_cols=72  Identities=13%  Similarity=0.310  Sum_probs=67.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEEEe-C-CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGV-LTLLDLRTGTSLASWK-G-HEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-~-~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.+++|+|+++++++++.|++ +++||+.+++.+..+. + |...|.++. +|++..+++++.|+.+++||++..
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            4789999999999999999998 9999999999998888 5 899999999 999999999999999999999754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.76  E-value=5e-17  Score=87.78  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      .+.+++|+|++ .++++++.++.|++||+.+++....+.++...|.++. +|++ .++++++.|+.|++||+++++++..
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            36789999975 6889999999999999999999899999999999999 8876 5788999999999999999988876


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      + +|.+.|
T Consensus       308 ~-~H~~~V  314 (357)
T 4g56_B          308 L-SHRDFV  314 (357)
T ss_dssp             C-CCSSCE
T ss_pred             C-CCCCCE
Confidence            5 687765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.76  E-value=7.5e-17  Score=91.91  Aligned_cols=80  Identities=23%  Similarity=0.403  Sum_probs=72.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-------CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-------GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.+++|+||++++++++.|+++++||..+++....+.       +|...|.++. +|++..+++++.|+++++||++++
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            47899999999999999999999999999888877773       7899999999 999999999999999999999999


Q ss_pred             eEEEeecC
Q psy13945         73 SLKCNIQG   80 (86)
Q Consensus        73 ~~~~~~~~   80 (86)
                      +++..+..
T Consensus       272 ~~~~~~~~  279 (611)
T 1nr0_A          272 KVEKTIPV  279 (611)
T ss_dssp             EEEEEEEC
T ss_pred             ceeeeecC
Confidence            88877653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.75  E-value=8.8e-17  Score=87.29  Aligned_cols=85  Identities=16%  Similarity=0.279  Sum_probs=72.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCc-------cceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHE-------GEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.+++|+|+++++++++.|+++++||+.+++....+..+.       ..+.++. +|++..+++++.|+.+++||...+
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            47899999999999999999999999999988877665432       2478899 999999999999999999999988


Q ss_pred             eEEEee----cCCCCCC
Q psy13945         73 SLKCNI----QGPTEPV   85 (86)
Q Consensus        73 ~~~~~~----~~~~~~v   85 (86)
                      +.+..+    .+|...|
T Consensus       331 ~~~~~~~~~~~~h~~~v  347 (380)
T 3iz6_a          331 EMVLNLGTLQNSHEGRI  347 (380)
T ss_dssp             CEEEEECCSCSSCCCCC
T ss_pred             ceEEEEecccCCCCCce
Confidence            888776    5677665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.8e-17  Score=87.25  Aligned_cols=85  Identities=19%  Similarity=0.309  Sum_probs=74.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCCe--
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDGS--   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~--   73 (86)
                      +|.+++|+|+++++++++.++.+++||+.  +.+....+.+|...|.++. +++  +..+++++.|+.|++||+.++.  
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence            58899999999999999999999999987  5566678888999999999 776  8999999999999999999886  


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ....+..|...|
T Consensus        93 ~~~~~~~~~~~v  104 (379)
T 3jrp_A           93 QIAVHAVHSASV  104 (379)
T ss_dssp             EEEEECCCSSCE
T ss_pred             EeeeecCCCcce
Confidence            677777776654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.75  E-value=1.5e-16  Score=85.77  Aligned_cols=85  Identities=21%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|++.++++++.|+++++||+...+....+..+  ...+.++. +|++..+++++.|+.|++||+.++..+..
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  321 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI  321 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence            4789999999999999999999999999887776665543  34678888 89999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.+|.+.|
T Consensus       322 l~~h~~~v  329 (354)
T 2pbi_B          322 LFGHENRV  329 (354)
T ss_dssp             ECCCSSCE
T ss_pred             EECCCCcE
Confidence            99998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.75  E-value=5.1e-17  Score=91.65  Aligned_cols=85  Identities=20%  Similarity=0.285  Sum_probs=78.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC-CccceEEEE-eC----------CCCeEEEEeCCCCEEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG-HEGEILQLV-TA----------DDGTLISSSLDQTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~-~~----------~~~~~~~~~~~~~i~~~~   68 (86)
                      +|.+++|+|+++++++++.++.+++||+.+++....+.+ |...|.++. +|          ++..+++++.|+.|++|+
T Consensus       490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            478999999999999999999999999999998888887 999999999 99          999999999999999999


Q ss_pred             CCCC-eEEEeecCCCCCC
Q psy13945         69 TNDG-SLKCNIQGPTEPV   85 (86)
Q Consensus        69 ~~~~-~~~~~~~~~~~~v   85 (86)
                      +.++ +++..+.+|...|
T Consensus       570 ~~~~~~~~~~~~~h~~~v  587 (615)
T 1pgu_A          570 VKRPMKIIKALNAHKDGV  587 (615)
T ss_dssp             SSCTTCCEEETTSSTTCE
T ss_pred             CCCCceechhhhcCccce
Confidence            9987 7888898898765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.74  E-value=1.1e-16  Score=85.52  Aligned_cols=84  Identities=20%  Similarity=0.361  Sum_probs=76.4

Q ss_pred             eeEEEECCC----CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSS----GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      |.+++|+|+    ++++++++.++.+++||..+++....+.+|...|.++. +| ++..+++++.|+.|++||+++++.+
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  151 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV  151 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence            788999998    67999999999999999999999999999999999999 88 8999999999999999999999988


Q ss_pred             Eee---cCCCCCC
Q psy13945         76 CNI---QGPTEPV   85 (86)
Q Consensus        76 ~~~---~~~~~~v   85 (86)
                      ..+   .+|...|
T Consensus       152 ~~~~~~~~~~~~v  164 (366)
T 3k26_A          152 AIFGGVEGHRDEV  164 (366)
T ss_dssp             EEECSTTSCSSCE
T ss_pred             EEecccccccCce
Confidence            887   5676554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.74  E-value=2.6e-16  Score=85.73  Aligned_cols=84  Identities=13%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEE--eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASW--KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +|.+++|+|++ .++++++.|+.+++||+.+++....+  ..|...|.++. +|++..+++++.|+.+++||+++++.+.
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence            47899999998 69999999999999999999988888  77899999999 9999999999999999999999999998


Q ss_pred             ee-cCCCCC
Q psy13945         77 NI-QGPTEP   84 (86)
Q Consensus        77 ~~-~~~~~~   84 (86)
                      .+ .+|.+.
T Consensus       213 ~~~~~~~~~  221 (402)
T 2aq5_A          213 EKDRPHEGT  221 (402)
T ss_dssp             EEECSSCSS
T ss_pred             eeccCCCCC
Confidence            88 677653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.74  E-value=2.1e-16  Score=91.04  Aligned_cols=85  Identities=20%  Similarity=0.293  Sum_probs=75.5

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCC-----ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTG-----TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      .|++++|++++ .++++++.|++|++|++...     .....+.+|...|.++. ++++..+++++.|+.|++||+.++.
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            47899999865 78999999999999998653     33567889999999999 9999999999999999999999999


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      +...+.+|...|
T Consensus       464 ~~~~~~~h~~~v  475 (694)
T 3dm0_A          464 STRRFVGHTKDV  475 (694)
T ss_dssp             EEEEEECCSSCE
T ss_pred             ceeEEeCCCCCE
Confidence            999999998765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=8.3e-17  Score=86.26  Aligned_cols=85  Identities=9%  Similarity=0.059  Sum_probs=72.8

Q ss_pred             CeeEEEECC--CCCEEEEEeCCCeEEEEEccCCceEEEEeC-CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE-
Q psy13945          1 LIRCIAVSS--SGSWIAIGQASGVLTLLDLRTGTSLASWKG-HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK-   75 (86)
Q Consensus         1 ~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-   75 (86)
                      +|.+++|+|  +++++++++.|+.+++||+.+++....... +...+.++. +|++..+++++.|+.|++||+++++.. 
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~  206 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS  206 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc
Confidence            478999999  999999999999999999998888665543 455789999 999999999999999999999998877 


Q ss_pred             EeecC-CCCCC
Q psy13945         76 CNIQG-PTEPV   85 (86)
Q Consensus        76 ~~~~~-~~~~v   85 (86)
                      ..+.. |...|
T Consensus       207 ~~~~~~h~~~v  217 (343)
T 3lrv_A          207 SRFPVDEEAKI  217 (343)
T ss_dssp             EECCCCTTSCE
T ss_pred             cEEeccCCCCE
Confidence            77777 87665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.73  E-value=4.5e-18  Score=91.65  Aligned_cols=85  Identities=8%  Similarity=0.075  Sum_probs=70.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe---E
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG--TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS---L   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~---~   74 (86)
                      +|.+++|+|+++++++++.++.+++||..++  +....+.+|...|.++. +|++..+++++.|+.+++||+.++.   .
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            4788999999999999999999999999887  66778888999999999 9999999999999999999998876   6


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      ...+.+|...|
T Consensus        93 ~~~~~~~~~~v  103 (377)
T 3dwl_C           93 TLVLLRLNRAA  103 (377)
T ss_dssp             EEECCCCSSCE
T ss_pred             eeEecccCCce
Confidence            66676776654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.2e-16  Score=87.59  Aligned_cols=84  Identities=15%  Similarity=0.383  Sum_probs=74.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccceEEEE-e----CCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLV-T----ADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~-~----~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|.+++|+|+++++++++.++.+++||+..++....+. .+...|.++. +    +++..+++++.|+.|++||++++++
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            47899999999999999999999999999988888776 6777899995 4    4677899999999999999999999


Q ss_pred             EEeecCCCCC
Q psy13945         75 KCNIQGPTEP   84 (86)
Q Consensus        75 ~~~~~~~~~~   84 (86)
                      +..+.+|...
T Consensus       296 ~~~~~~~~~~  305 (437)
T 3gre_A          296 QYAFINSDEQ  305 (437)
T ss_dssp             EEEEESSSSC
T ss_pred             EEEEEcCCCC
Confidence            9999887644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.73  E-value=2.6e-16  Score=85.18  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=74.4

Q ss_pred             CeeEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeC-------------CccceEEEE-eCCCCeEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKG-------------HEGEILQLV-TADDGTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~-------------~~~~v~~~~-~~~~~~~~~~~~~~~   63 (86)
                      +|.+++|+|+++++++++.+   +.+++||+.+++....+..             |...|.++. +|++..+++++.|+.
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  314 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  314 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence            47899999999999999999   9999999999998888888             899999999 999999999999999


Q ss_pred             EEEEeCCCCeEEEeec
Q psy13945         64 ISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~   79 (86)
                      |++||+++++++..+.
T Consensus       315 i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          315 LRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCceeEEEe
Confidence            9999999999999988

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.73  E-value=1.5e-16  Score=85.94  Aligned_cols=78  Identities=21%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.+++|+|+++++++++.++.|++||..+++....+.+|...|.++. ++++. .+++++.|+.|++||++++++...+
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            478999999999999999999999999999999999999999999999 88764 7889999999999999887765544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.73  E-value=4.4e-16  Score=84.57  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=71.6

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEcc-CCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLR-TGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      |.+++|++ ++.++++++.|+.+++||+. ..+....+.+|...|.++. +|++..+++++.|+.+++||++++.++..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            67888876 78999999999999999987 4566778889999999999 999999999999999999999999988877


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       288 ~~~  290 (380)
T 3iz6_a          288 NRE  290 (380)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.73  E-value=2.8e-16  Score=83.94  Aligned_cols=84  Identities=19%  Similarity=0.408  Sum_probs=72.3

Q ss_pred             CeeEEEECCC---CCEEEEEeCCCeEEEEEccC-CceE-EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSS---GSWIAIGQASGVLTLLDLRT-GTSL-ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|.+++|+|+   ++++++++.++.+++||+.+ +... ..+.+|...|.++. +|++..+++++.|+.+++||++++..
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  120 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA  120 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc
Confidence            4889999999   59999999999999999986 5444 67788999999999 99999999999999999999999887


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      .... .|...|
T Consensus       121 ~~~~-~~~~~v  130 (368)
T 3mmy_A          121 IQIA-QHDAPV  130 (368)
T ss_dssp             EEEE-ECSSCE
T ss_pred             eeec-cccCce
Confidence            7643 465544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.72  E-value=4.9e-16  Score=89.49  Aligned_cols=73  Identities=30%  Similarity=0.531  Sum_probs=68.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      .|.+++|+|+++++++++.|++|++||+.++.....+.+|...|.++. +|++..+++++.|+.|++||.....
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            478999999999999999999999999999999999999999999999 9999999999999999999986543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.72  E-value=3.1e-16  Score=86.36  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCce--EEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTS--LASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .|++++|+| ++.++++|+.||.|++||+.+++.  ...+.+|...|.++. +| ++..+++++.|++|++||++.+...
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            389999999 567899999999999999876654  344568999999999 87 6889999999999999999876544


Q ss_pred             Eee
Q psy13945         76 CNI   78 (86)
Q Consensus        76 ~~~   78 (86)
                      ...
T Consensus       201 ~~~  203 (435)
T 4e54_B          201 VFA  203 (435)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.72  E-value=1.2e-15  Score=80.74  Aligned_cols=85  Identities=22%  Similarity=0.339  Sum_probs=75.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|+++++++++.++.+++||...++  ....+..+...+.++. +|++..+++++.++.+++||+++++.+..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence            37899999999999999999999999998776  4566778888999999 99999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +..|...|
T Consensus       179 ~~~~~~~i  186 (337)
T 1gxr_A          179 FQGHTDGA  186 (337)
T ss_dssp             ECCCSSCE
T ss_pred             eecccCce
Confidence            98887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.72  E-value=1e-15  Score=81.27  Aligned_cols=82  Identities=20%  Similarity=0.306  Sum_probs=70.2

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCc-----eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGT-----SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|++++|+|+ ++++++++.|++|++||+...+     ....+.+|...|.++. +|++..+++++.|+.+++|+.....
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~  119 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT  119 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccc
Confidence            5899999997 5899999999999999987543     3566788999999999 9999999999999999999998887


Q ss_pred             EEEeecCCC
Q psy13945         74 LKCNIQGPT   82 (86)
Q Consensus        74 ~~~~~~~~~   82 (86)
                      .......+.
T Consensus       120 ~~~~~~~~~  128 (340)
T 4aow_A          120 TTRRFVGHT  128 (340)
T ss_dssp             EEEEEECCS
T ss_pred             eeeeecCCC
Confidence            766655443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.72  E-value=5.8e-16  Score=83.06  Aligned_cols=84  Identities=15%  Similarity=0.268  Sum_probs=73.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|+++++++++.++.+++||..+++  ....+.+|...|.++. +|++..+++++.|+.+++||+++++....
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence            57899999999999999999999999998887  7788889999999999 99999999999999999999988865443


Q ss_pred             e--cCCCCC
Q psy13945         78 I--QGPTEP   84 (86)
Q Consensus        78 ~--~~~~~~   84 (86)
                      +  ..|...
T Consensus        90 ~~~~~~~~~   98 (372)
T 1k8k_C           90 LVILRINRA   98 (372)
T ss_dssp             EECCCCSSC
T ss_pred             EEeecCCCc
Confidence            3  455544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.6e-16  Score=94.02  Aligned_cols=84  Identities=8%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc---------------------------------------------eEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT---------------------------------------------SLA   35 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------------------------~~~   35 (86)
                      +|.+++|+||++++++|+.|++|++|++.+++                                             +..
T Consensus       490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  569 (902)
T 2oaj_A          490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST  569 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence            47899999999999999999999999987652                                             255


Q ss_pred             EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE-----eec-CCCCCC
Q psy13945         36 SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC-----NIQ-GPTEPV   85 (86)
Q Consensus        36 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~v   85 (86)
                      .+.+|...|.+++ +|++ .+++++.|++|++||+++...+.     .+. +|.+.|
T Consensus       570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V  625 (902)
T 2oaj_A          570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV  625 (902)
T ss_dssp             EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred             EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence            6778999999999 9999 99999999999999998877654     232 676655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.71  E-value=6.7e-16  Score=84.65  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ++.++|+++ +.+++| .|++|++||..+++....+.  .|...|.+++ +|++..+++|+.|+.|++||+++++++..+
T Consensus       108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            467899975 466665 48999999999998877665  5667899999 999999999999999999999999999999


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|...+
T Consensus       186 ~~h~~~v  192 (420)
T 4gga_A          186 TSHSARV  192 (420)
T ss_dssp             CCCSSCE
T ss_pred             eCCCCce
Confidence            9987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.71  E-value=6.2e-16  Score=81.86  Aligned_cols=81  Identities=22%  Similarity=0.328  Sum_probs=68.2

Q ss_pred             CeeEEEECCCC----CEEEEEeCCCeEEEEEccCC---------------------------------------------
Q psy13945          1 LIRCIAVSSSG----SWIAIGQASGVLTLLDLRTG---------------------------------------------   31 (86)
Q Consensus         1 ~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~---------------------------------------------   31 (86)
                      +|.+++|+|++    +++++++.|+.+++||+..+                                             
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ  295 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred             ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence            47899999998    89999999999999998764                                             


Q ss_pred             -ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC---eEEEeecCC
Q psy13945         32 -TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG---SLKCNIQGP   81 (86)
Q Consensus        32 -~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~   81 (86)
                       +....+.+|...|.++. +|++..+++++.|+.|++|++.++   .++..+..|
T Consensus       296 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ  350 (351)
T ss_dssp             EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred             ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence             44566778899999999 999999999999999999999876   455555544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.71  E-value=9.2e-16  Score=92.28  Aligned_cols=85  Identities=25%  Similarity=0.322  Sum_probs=78.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eC--CCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TA--DDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|+++++++++.++.+++||..+++....+.+|...|.++. ++  +...+++++.|+.+++||++++.++..
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~  738 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT  738 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe
Confidence            478999999999999999999999999999999999999999999999 77  556788999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.+|.+.|
T Consensus       739 ~~~h~~~v  746 (1249)
T 3sfz_A          739 MFGHTNSV  746 (1249)
T ss_dssp             ECCCSSCE
T ss_pred             ecCCCCCE
Confidence            99998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.71  E-value=2.6e-16  Score=85.71  Aligned_cols=83  Identities=24%  Similarity=0.280  Sum_probs=75.4

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      ....|+++++++++++.++.+++||+.+++....+.+|...|.++. +|++..+++++.|+.|++||+++++.+..+.+|
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  180 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH  180 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence            3457899999999999999999999998888777788999999999 999999999999999999999999988888888


Q ss_pred             CCCC
Q psy13945         82 TEPV   85 (86)
Q Consensus        82 ~~~v   85 (86)
                      ...|
T Consensus       181 ~~~v  184 (420)
T 3vl1_A          181 RATV  184 (420)
T ss_dssp             SSCE
T ss_pred             CCcE
Confidence            8765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.6e-16  Score=85.16  Aligned_cols=76  Identities=9%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceE-EEEeC-CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKG-HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~-~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|+|++.++++|+.++.|++||+.+++.. ..+.. |...|.++. +|++..+++++.+ .|++||++.+..+..+
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceee
Confidence            678999999999999999999999999988877 77777 899999999 9999999999955 9999999987655443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.70  E-value=1e-15  Score=81.44  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCC------ceEEEEeCCcc---------ceEEEE-eCCCCeEEEEeCCCC
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTG------TSLASWKGHEG---------EILQLV-TADDGTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~---------~v~~~~-~~~~~~~~~~~~~~~   63 (86)
                      ++.+++|+| +++.+++++.++.+++|+....      +....+..|..         .|.++. +|++..+++++.|+.
T Consensus       195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence            478999999 9999999999999999999876      66677777755         899999 999999999999999


Q ss_pred             EEEEeCCCCeEEEeecCC-CCCC
Q psy13945         64 ISAWHTNDGSLKCNIQGP-TEPV   85 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~~~-~~~v   85 (86)
                      |++||+++++.+..+.+| ...|
T Consensus       275 i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          275 ISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             EEEEETTTTEEEEECCCCSSSEE
T ss_pred             EEEEcCccHhHhhhhhcccCCCc
Confidence            999999999999999887 6654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.70  E-value=7.5e-16  Score=83.47  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             eeEEEECCCCCEEEEEeCCC----eEEEEEccCCce----EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASG----VLTLLDLRTGTS----LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      |.+++|+|+++.+++++.++    .++.|+......    ...+.+|...|.+++ +|++.++++++.|+.|++||++++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            67899999999999988776    688888775543    345677889999999 999999999999999999999999


Q ss_pred             eEEEee-cCCCCCC
Q psy13945         73 SLKCNI-QGPTEPV   85 (86)
Q Consensus        73 ~~~~~~-~~~~~~v   85 (86)
                      +++..+ .+|...|
T Consensus       302 ~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          302 SMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEEEEETTSSSSCE
T ss_pred             cEEEEecCcccCCE
Confidence            999875 7898776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.70  E-value=6.8e-16  Score=82.79  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=75.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEc------------------cCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDL------------------RTGTSLASWKGHEGEILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~------------------~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~   61 (86)
                      .|.+++|+|+++++++++.++.+++||+                  ..++....+..|...+.++. +|++..+++++.|
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            4789999999999999999999999995                  35677777888899999999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         62 QTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      +.+++||+++++++..+..|...|
T Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~v  247 (372)
T 1k8k_C          224 STVCLADADKKMAVATLASETLPL  247 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             CEEEEEECCCCceeEEEccCCCCe
Confidence            999999999999999888887554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.70  E-value=1.4e-16  Score=86.91  Aligned_cols=78  Identities=10%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             CeeEEEECC--------CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS--------SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~   70 (86)
                      +|.+++|+|        |+++|++++.|+++++||+.++.....+..+...+.++. +|++ ..+++++.|+.|++||++
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence            478999987        889999999999999999988888888888889999999 9986 478999999999999998


Q ss_pred             CCeEEEee
Q psy13945         71 DGSLKCNI   78 (86)
Q Consensus        71 ~~~~~~~~   78 (86)
                      +++.....
T Consensus       218 t~~~~~~~  225 (393)
T 4gq1_A          218 LNLSAEEN  225 (393)
T ss_dssp             CCC-----
T ss_pred             CCcccccc
Confidence            87655443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.70  E-value=9.5e-16  Score=80.57  Aligned_cols=83  Identities=28%  Similarity=0.536  Sum_probs=75.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++.+++|+|++. +++++.++.+++||+.+++....+.+|...+.++. +|++ .+++++.|+.|++||+++++....+.
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe
Confidence            478899999988 88999999999999999999999999999999999 8988 68899999999999999999999988


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|...|
T Consensus       264 ~~~~~i  269 (313)
T 3odt_A          264 LPAISI  269 (313)
T ss_dssp             CSSSCE
T ss_pred             ccCceE
Confidence            887554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.69  E-value=7.3e-16  Score=81.24  Aligned_cols=71  Identities=25%  Similarity=0.355  Sum_probs=64.0

Q ss_pred             eeEEEECCCCCEEEEEe--CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQ--ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +..+.|++++..+++++  .++.|++||..+++.+..+.+|...|.+++ +|++..+++++.|++|++||+.+.
T Consensus       243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            56788999888776544  789999999999999999999999999999 999999999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.69  E-value=1.8e-15  Score=79.87  Aligned_cols=85  Identities=12%  Similarity=0.313  Sum_probs=71.0

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCC-------------CCeEEEEeCCC
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TAD-------------DGTLISSSLDQ   62 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~-------------~~~~~~~~~~~   62 (86)
                      +|.+++|+|+  +.++++++.|+.+++||+....  ....+.+|...|.++. +|+             +..+++++.|+
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence            4789999997  8899999999999999987653  2456678889999999 876             46899999999


Q ss_pred             CEEEEeCCCCe----EEEeecCCCCCC
Q psy13945         63 TISAWHTNDGS----LKCNIQGPTEPV   85 (86)
Q Consensus        63 ~i~~~~~~~~~----~~~~~~~~~~~v   85 (86)
                      .|++||++++.    ....+.+|.+.|
T Consensus       181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V  207 (297)
T 2pm7_B          181 LVKIWKYNSDAQTYVLESTLEGHSDWV  207 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             cEEEEEEcCCCceEEEEEEecCCCCce
Confidence            99999998754    567788888765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.69  E-value=1.4e-16  Score=85.81  Aligned_cols=85  Identities=7%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc---eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe---
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT---SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS---   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~---   73 (86)
                      +|.+++|+|+++++++++.|+.+++||+.+++   ....+..|...|.++. +|++..+++++.|+.+++||++.+.   
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  136 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW  136 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence            47899999999999999999999999998776   5666778999999999 9999999999999999999998876   


Q ss_pred             EEEeecC-CCCCC
Q psy13945         74 LKCNIQG-PTEPV   85 (86)
Q Consensus        74 ~~~~~~~-~~~~v   85 (86)
                      ....+.. |...|
T Consensus       137 ~~~~~~~~h~~~v  149 (377)
T 3dwl_C          137 VSKHLKRPLRSTI  149 (377)
T ss_dssp             CCEEECSSCCSCE
T ss_pred             eeeEeecccCCCe
Confidence            3666666 76654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.3e-15  Score=86.66  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce-------EEEE----eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-------LASW----KGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~----~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      +.+++|+|||+++++|+.|++|++||+..+..       +.++    .+|...|.+++ +|++  +++++.|+.+++|++
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            78999999999999999999999999987752       4565    45678999999 9998  889999999999999


Q ss_pred             CCCeE---EEee-cCCCCCC
Q psy13945         70 NDGSL---KCNI-QGPTEPV   85 (86)
Q Consensus        70 ~~~~~---~~~~-~~~~~~v   85 (86)
                      ..+..   .+.+ .+|...|
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCC
T ss_pred             CCCccccceeeecccccCcE
Confidence            87663   3456 3676555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.69  E-value=8.7e-16  Score=89.13  Aligned_cols=85  Identities=19%  Similarity=0.361  Sum_probs=78.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC-eEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG-SLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~   78 (86)
                      +|.+++|+|+++++++++.++.+++||..+++....+.+|...|.++. +|++..+++++.|+.+++|++.++ .....+
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  136 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence            478999999999999999999999999999999999999999999999 999999999999999999999876 777788


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      .+|...|
T Consensus       137 ~~~~~~v  143 (814)
T 3mkq_A          137 EGHEHFV  143 (814)
T ss_dssp             ECCSSCE
T ss_pred             cCCCCcE
Confidence            8887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=5.6e-16  Score=84.95  Aligned_cols=75  Identities=24%  Similarity=0.317  Sum_probs=65.8

Q ss_pred             eeEEEECCCCCEEEEEe--CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQ--ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +.++.|++++..+++++  .++.|++||..+++.+..+.+|...|.+++ +|++..+++++.|++|++||+....+..
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            56788999998877654  789999999999999999999999999999 9999999999999999999987654333

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.6e-15  Score=79.90  Aligned_cols=82  Identities=23%  Similarity=0.396  Sum_probs=73.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|++.++++++.++.+++|| .+++....+..|...|.++. +|++..+++++.++.+++||++++..+..+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            478999999999999999999999999 66777888888999999999 9999999999999999999999999888887


Q ss_pred             CCCC
Q psy13945         80 GPTE   83 (86)
Q Consensus        80 ~~~~   83 (86)
                      .+..
T Consensus       189 ~~~~  192 (425)
T 1r5m_A          189 LKET  192 (425)
T ss_dssp             CC--
T ss_pred             cccc
Confidence            6654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.68  E-value=5.6e-16  Score=90.20  Aligned_cols=85  Identities=19%  Similarity=0.309  Sum_probs=74.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCCe--
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDGS--   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~--   73 (86)
                      +|++++|+|+++++++++.++.|++||..  ++.....+.+|...|.++. +++  +..+++++.|+.|++||+.++.  
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~   90 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   90 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence            58899999999999999999999999987  4556778889999999999 777  8999999999999999999886  


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ....+.+|...|
T Consensus        91 ~~~~~~~h~~~V  102 (753)
T 3jro_A           91 QIAVHAVHSASV  102 (753)
T ss_dssp             EEEEECCCSSCE
T ss_pred             ccccccCCCCCe
Confidence            667777787654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.68  E-value=3e-15  Score=82.61  Aligned_cols=80  Identities=21%  Similarity=0.454  Sum_probs=72.1

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      .++.+  ++.++++++.|+.|++||..+++....+.+|...|.++. ++++ .+++++.|+.|++||+++++++..+.+|
T Consensus       126 ~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          126 TCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             EEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence            45555  678999999999999999999999999999999999999 7777 8999999999999999999999999988


Q ss_pred             CCCC
Q psy13945         82 TEPV   85 (86)
Q Consensus        82 ~~~v   85 (86)
                      .+.|
T Consensus       203 ~~~v  206 (464)
T 3v7d_B          203 NSTV  206 (464)
T ss_dssp             SSCE
T ss_pred             CCcc
Confidence            8765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.68  E-value=1.9e-15  Score=82.85  Aligned_cols=74  Identities=19%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc-----------eEEEEeCCc------------cceEEEE-eCCC--Ce
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT-----------SLASWKGHE------------GEILQLV-TADD--GT   54 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~------------~~v~~~~-~~~~--~~   54 (86)
                      +|++++|+|+++++++|+.++.|++||..++.           ....+.+|.            ..|.++. +|++  ..
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~  109 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ  109 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence            48899999999999999999999999988766           467788887            8899999 8887  78


Q ss_pred             EEEEeCCCCEEEEeCCCCeE
Q psy13945         55 LISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus        55 ~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +++++.|+.|++|++..+..
T Consensus       110 l~s~s~d~~i~iw~~~~~~~  129 (447)
T 3dw8_B          110 FLLSTNDKTIKLWKISERDK  129 (447)
T ss_dssp             EEEEECSSCEEEEEEEEEEE
T ss_pred             EEEeCCCCeEEEEecccccC
Confidence            99999999999999876443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.68  E-value=3e-16  Score=83.88  Aligned_cols=75  Identities=19%  Similarity=0.329  Sum_probs=68.1

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEE---eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASW---KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+| ++.++++++.++.|++||+.+++....+   ..|...|.++. +|++..+++++.|+.+++||+++++..
T Consensus       117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence            478999999 8999999999999999999998888877   67889999999 999999999999999999999876544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.9e-15  Score=81.63  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC--CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec-CCC
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG--HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ-GPT   82 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~   82 (86)
                      +++++.++++++.++.+++||+.+++....+..  |...|.++. +|++..+++++.|+.|++||+++++++..+. .|.
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH  257 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence            567899999999999999999999999988888  789999999 9999999999999999999999999988775 454


Q ss_pred             C
Q psy13945         83 E   83 (86)
Q Consensus        83 ~   83 (86)
                      .
T Consensus       258 ~  258 (437)
T 3gre_A          258 A  258 (437)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.68  E-value=2.1e-15  Score=81.56  Aligned_cols=83  Identities=27%  Similarity=0.421  Sum_probs=72.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCC----CeE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTND----GSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~----~~~   74 (86)
                      +|.+++|+|+++.+++++.++.+++||+ .++....+.+|...|.++. +|++. .+++++.|+.|++||+++    +.+
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  243 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY  243 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence            3789999999999999999999999998 5777888889999999999 99988 899999999999999987    566


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+ +|...|
T Consensus       244 ~~~~-~~~~~v  253 (383)
T 3ei3_B          244 IAEM-PHEKPV  253 (383)
T ss_dssp             EEEE-ECSSCE
T ss_pred             EEEe-cCCCce
Confidence            6666 465543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.67  E-value=6.5e-15  Score=83.14  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=77.4

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCcc---ceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEG---EILQLV-TAD-DGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|.+++|+|+++ .+++++.++.+++||..+++....+.+|..   .|.++. +|+ +..+++++.++.+++||+++++.
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE
Confidence            478999999997 899999999999999999999889998888   999999 999 99999999999999999999999


Q ss_pred             EEee-c---CCCCCC
Q psy13945         75 KCNI-Q---GPTEPV   85 (86)
Q Consensus        75 ~~~~-~---~~~~~v   85 (86)
                      +..+ .   .|...|
T Consensus       242 ~~~~~~~~~~~~~~v  256 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGI  256 (615)
T ss_dssp             EEECCBTTBCCCSCE
T ss_pred             eEEecccccccCCce
Confidence            9888 5   777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.7e-15  Score=80.47  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|.+++|+|+++++++++.++.+++||+..++....+..+...+.++. +|++ .+++++.++.+++||+++++.+..+.
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~  327 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI  327 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc
Confidence            478999999999999999999999999998888888888999999999 9988 99999999999999999999998888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      .|...|
T Consensus       328 ~~~~~i  333 (425)
T 1r5m_A          328 VDGVPI  333 (425)
T ss_dssp             CTTCCE
T ss_pred             cCCccE
Confidence            876554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.9e-15  Score=77.88  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=73.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC---eEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG---SLKC   76 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~~~   76 (86)
                      +|.+++| ++++++++++.++.+++||..+++....+..|...+.++. +|++..+++++.|+.+++|++...   +...
T Consensus        20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred             CcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence            4789999 9999999999999999999998888888888999999999 999999999999999999998653   5566


Q ss_pred             eecCCCCCC
Q psy13945         77 NIQGPTEPV   85 (86)
Q Consensus        77 ~~~~~~~~v   85 (86)
                      .+.+|...|
T Consensus        99 ~~~~~~~~i  107 (313)
T 3odt_A           99 TLIGHQGNV  107 (313)
T ss_dssp             EECCCSSCE
T ss_pred             chhhcccCE
Confidence            777776654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.1e-15  Score=85.12  Aligned_cols=82  Identities=15%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc-----ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe-
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG-----EILQLV-TADDGTLISSSLDQTISAWHTNDGS-   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-   73 (86)
                      +|.+++|+|||..+++++.++.+++||...  .+..+. |..     .+.+++ +|+++.+++++.|++|++|++..+. 
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            488999999999999999999999999543  445555 544     499999 9999999999999999999998874 


Q ss_pred             ------EEEee----cCCCCCC
Q psy13945         74 ------LKCNI----QGPTEPV   85 (86)
Q Consensus        74 ------~~~~~----~~~~~~v   85 (86)
                            .+..+    .+|.+.|
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCE
T ss_pred             ccccceeeeeeecccccccccE
Confidence                  35665    5565554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.66  E-value=4.9e-15  Score=81.76  Aligned_cols=80  Identities=29%  Similarity=0.444  Sum_probs=74.1

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   84 (86)
                      +++++++.+++++.++.+++||+.+++....+.+|...+.++. +|++..+++++.|+.|++||+++++++..+.+|...
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence            3466789999999999999999999999999999999999999 999999999999999999999999999999999876


Q ss_pred             C
Q psy13945         85 V   85 (86)
Q Consensus        85 v   85 (86)
                      |
T Consensus       355 v  355 (464)
T 3v7d_B          355 V  355 (464)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.66  E-value=9.7e-15  Score=80.85  Aligned_cols=80  Identities=13%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.+++|+|+ +.++++++.|+++++||+.++.......+|...+.++. +|++..+++++.|+.|++||.+ +.....+
T Consensus       151 ~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence            4789999997 78999999999999999998876666677888999999 9999999999999999999998 5555544


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..|
T Consensus       230 ~~~  232 (434)
T 2oit_A          230 PCP  232 (434)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.66  E-value=1.7e-14  Score=76.40  Aligned_cols=79  Identities=19%  Similarity=0.297  Sum_probs=73.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .|.+++|+|+++.+++++.++.+++||+.+++....+..|...+.++. +|++..+++++.++.+++||+++++.+..+.
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec
Confidence            368899999999999999999999999999998888888999999999 9999999999999999999999988877664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.1e-15  Score=81.96  Aligned_cols=85  Identities=22%  Similarity=0.345  Sum_probs=75.3

Q ss_pred             CeeEEEECCCC-CEEEEEeCCC---eEEEEEccCC-ceEEEEe-CCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASG---VLTLLDLRTG-TSLASWK-GHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~---~v~~~~~~~~-~~~~~~~-~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.+++|+|++ .++++++.++   .+++||+..+ .....+. +|...+.++. +| ++..+++++.|+.+++||++++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            37899999997 6899999998   9999999876 5566677 8899999999 88 8999999999999999999999


Q ss_pred             eEEEeecCCCCCC
Q psy13945         73 SLKCNIQGPTEPV   85 (86)
Q Consensus        73 ~~~~~~~~~~~~v   85 (86)
                      +++..+.+|...|
T Consensus       296 ~~~~~~~~~~~~v  308 (416)
T 2pm9_A          296 EQLSQFPARGNWC  308 (416)
T ss_dssp             CEEEEEECSSSCC
T ss_pred             ccceeecCCCCce
Confidence            9999998887765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.66  E-value=3.4e-15  Score=80.83  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=72.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC---C---ccceEEEE-eCCCCeEEEEeCC---CCEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG---H---EGEILQLV-TADDGTLISSSLD---QTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~---~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~   70 (86)
                      .|.+++|+|++ .+++++.++.+++||+.+++....+..   |   ...+.++. +|++..+++++.|   +.|++||++
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             CceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            36789999999 999999999999999999998888888   8   89999999 9999999999999   999999999


Q ss_pred             CCeEEEeecC
Q psy13945         71 DGSLKCNIQG   80 (86)
Q Consensus        71 ~~~~~~~~~~   80 (86)
                      +++.+..+.+
T Consensus       267 ~~~~~~~~~~  276 (397)
T 1sq9_A          267 FGERIGSLSV  276 (397)
T ss_dssp             TCCEEEEECB
T ss_pred             CCcccceecc
Confidence            9999988887

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.3e-15  Score=83.11  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             CeeEEEECCC---CCEEEEEeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSS---GSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+|+   ++++++++.|+.|++||+.+++.... +.+|...|.++. + ++..+++++.|+.|++||+++++++
T Consensus       197 ~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          197 MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred             ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence            4789999999   99999999999999999998887776 558999999999 8 9999999999999999999999888


Q ss_pred             Eeec
Q psy13945         76 CNIQ   79 (86)
Q Consensus        76 ~~~~   79 (86)
                      ..+.
T Consensus       276 ~~~~  279 (450)
T 2vdu_B          276 STFD  279 (450)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            7775

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.65  E-value=7.6e-15  Score=79.39  Aligned_cols=82  Identities=10%  Similarity=0.108  Sum_probs=58.3

Q ss_pred             eEEEECC---CCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc---ceEEEE-e--------------------------
Q psy13945          3 RCIAVSS---SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG---EILQLV-T--------------------------   49 (86)
Q Consensus         3 ~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~-~--------------------------   49 (86)
                      ..++|++   ++.++++++.|++|++||+.+++.+.++.++..   .+.++. +                          
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            4566666   668899999999999999999998888765321   221111 1                          


Q ss_pred             -------------------CCCC------------eEEEEeCCCCEEEEeCCCCeEEEeecCCCCC
Q psy13945         50 -------------------ADDG------------TLISSSLDQTISAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus        50 -------------------~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   84 (86)
                                         |++.            .+++++.|++|++||+.+++++.++.+|.+.
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                               2222            3567778999999999999999999888654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.65  E-value=4.8e-15  Score=78.84  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc---eEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeC-CCCeE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT---SLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHT-NDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~-~~~~~   74 (86)
                      +|.+++|+|++.++++++.++.+++|++..+.   .......|...|.++. +|++. .+++++.|+.|++|++ ..+..
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~   92 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence            48899999999999999999999999998766   3445567889999999 99999 9999999999999999 77654


Q ss_pred             EEeecC--CCCCC
Q psy13945         75 KCNIQG--PTEPV   85 (86)
Q Consensus        75 ~~~~~~--~~~~v   85 (86)
                       ..+.+  |...|
T Consensus        93 -~~~~~~~~~~~v  104 (342)
T 1yfq_A           93 -QALTNNEANLGI  104 (342)
T ss_dssp             -EECBSCCCCSCE
T ss_pred             -EeccccCCCCce
Confidence             55666  76654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.65  E-value=3.5e-15  Score=80.69  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccC----CceEEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRT----GTSLASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|.+++|+|+++ ++++++.|+.+++||+.+    +.....+ +|...+.++. +| ++..+++++.|+.+++||++++.
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            478999999998 999999999999999987    4455554 6889999999 99 99999999999999999998876


Q ss_pred             EEEeecCC
Q psy13945         74 LKCNIQGP   81 (86)
Q Consensus        74 ~~~~~~~~   81 (86)
                      ....+.+|
T Consensus       285 ~~~~~~~~  292 (383)
T 3ei3_B          285 KPDQIIIH  292 (383)
T ss_dssp             SCSEEEEC
T ss_pred             cccccccc
Confidence            65555544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.4e-16  Score=88.39  Aligned_cols=85  Identities=9%  Similarity=0.050  Sum_probs=71.3

Q ss_pred             CeeEE--EECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCcc--ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCI--AVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEG--EILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|.++  .|++++ +++++++.|+++++||+.+++....+.+|..  .+.+++ +|++..+++++.|+.+++||++++.+
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~  389 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA  389 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc
Confidence            46777  578887 8999999999999999988776666655542  477888 99999999999999999999999888


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+.+|.+.|
T Consensus       390 ~~~l~gH~~~V  400 (524)
T 2j04_B          390 VHPLVSRETTI  400 (524)
T ss_dssp             CEEEEECSSCE
T ss_pred             ceeeecCCCce
Confidence            88888887765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.64  E-value=2e-14  Score=78.41  Aligned_cols=84  Identities=21%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCC-CCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTN-DGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   79 (86)
                      +|.+++|+|++.++++++.++.+++||..+++....+.+|...|.++.. ++..+++++.|+.+++||++ .+.....+.
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence            4789999999999999999999999999999999999999999998873 45799999999999999998 466777888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|...|
T Consensus       215 ~~~~~v  220 (401)
T 4aez_A          215 GHSSEV  220 (401)
T ss_dssp             CCSSCE
T ss_pred             CCCCCe
Confidence            887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.64  E-value=2.1e-14  Score=79.00  Aligned_cols=81  Identities=25%  Similarity=0.413  Sum_probs=71.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      |.++.+  +++.+++|+.++.|++||..+++....+.+|...|.++.. ++..+++++.|+.|++||+.+++++..+.+|
T Consensus       136 v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             EEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             EEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence            445544  8999999999999999999999999999999999988853 7889999999999999999999999999888


Q ss_pred             CCCC
Q psy13945         82 TEPV   85 (86)
Q Consensus        82 ~~~v   85 (86)
                      ...|
T Consensus       213 ~~~v  216 (435)
T 1p22_A          213 CEAV  216 (435)
T ss_dssp             CSCE
T ss_pred             CCcE
Confidence            7765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.5e-15  Score=82.98  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE----EEeCCccceEEEE-eCC---CCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA----SWKGHEGEILQLV-TAD---DGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~-~~~---~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      .|.+++|+|+++++++++.++.+++|++..++...    .+.+|...|.++. +|+   +..+++++.|+.|++||++++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            36899999999999999999999999988766443    6677889999999 999   889999999999999999998


Q ss_pred             eEEEe-ecCCCCCC
Q psy13945         73 SLKCN-IQGPTEPV   85 (86)
Q Consensus        73 ~~~~~-~~~~~~~v   85 (86)
                      .++.. +.+|...|
T Consensus       231 ~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          231 FIVDKWLFGHKHFV  244 (450)
T ss_dssp             TCEEEECCCCSSCE
T ss_pred             ceeeeeecCCCCce
Confidence            88777 55787654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.64  E-value=3.6e-14  Score=77.40  Aligned_cols=83  Identities=20%  Similarity=0.378  Sum_probs=73.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEcc-CCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLR-TGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +|.+++|  +++.+++++.++.+++||+. .......+.+|...|.++. +|++..+++++.|+.|++||++++.+...+
T Consensus       178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  255 (401)
T 4aez_A          178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK  255 (401)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred             ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence            3678888  56899999999999999998 4566778889999999999 999999999999999999999999999988


Q ss_pred             cCCCCCC
Q psy13945         79 QGPTEPV   85 (86)
Q Consensus        79 ~~~~~~v   85 (86)
                      ..|...|
T Consensus       256 ~~~~~~v  262 (401)
T 4aez_A          256 TNHNAAV  262 (401)
T ss_dssp             CCCSSCC
T ss_pred             cCCcceE
Confidence            8887765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.3e-14  Score=77.84  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCC-
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDG-   72 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~-   72 (86)
                      +|.+++|+++  ++++++++.|+.+++||+.+++  ....+..|...+.++. +|+  +..+++++.|+.+++||++.+ 
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            4789999987  8999999999999999999886  5667778899999999 898  899999999999999999876 


Q ss_pred             -eEEEeecCCCCCC
Q psy13945         73 -SLKCNIQGPTEPV   85 (86)
Q Consensus        73 -~~~~~~~~~~~~v   85 (86)
                       .....+..|...|
T Consensus       137 ~~~~~~~~~~~~~v  150 (379)
T 3jrp_A          137 TTSPIIIDAHAIGV  150 (379)
T ss_dssp             CCCEEEEECCTTCE
T ss_pred             ceeeEEecCCCCce
Confidence             3344555665443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.64  E-value=5.6e-15  Score=78.83  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             CeeEEEECCCCCE-EEEEeC---CCeEEEEEccCCceEEEE-eCCccceEEEE-eCC---CCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSW-IAIGQA---SGVLTLLDLRTGTSLASW-KGHEGEILQLV-TAD---DGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~---~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +|.+++|+|++.. +++++.   ++.+++||+.+++..... ..|...|.++. +|+   +..+++++.|+.+++||+.+
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~   99 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA   99 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence            4789999999865 556665   899999999987765443 36788999999 887   69999999999999999998


Q ss_pred             Ce-EEEeecCCCCCC
Q psy13945         72 GS-LKCNIQGPTEPV   85 (86)
Q Consensus        72 ~~-~~~~~~~~~~~v   85 (86)
                      +. .+..+.+|...|
T Consensus       100 ~~~~~~~~~~~~~~v  114 (357)
T 3i2n_A          100 PEMPVYSVKGHKEII  114 (357)
T ss_dssp             CSSCSEEECCCSSCE
T ss_pred             CCccEEEEEecccce
Confidence            87 778888887755

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.64  E-value=5.1e-15  Score=78.77  Aligned_cols=84  Identities=17%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             CeeEEEECC--CCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSS--SGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|.+++|++  +++++++++.|+++++||..+++  ....+.+|...|.++. +|+  +..+++++.|+.+++|+++.+.
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            478999986  48999999999999999998763  4566778999999999 887  7789999999999999998652


Q ss_pred             ---EEEeecCCCCC
Q psy13945         74 ---LKCNIQGPTEP   84 (86)
Q Consensus        74 ---~~~~~~~~~~~   84 (86)
                         ....+.+|...
T Consensus       139 ~~~~~~~~~~h~~~  152 (316)
T 3bg1_A          139 QWEVKKINNAHTIG  152 (316)
T ss_dssp             CEEECCBTTSSSSC
T ss_pred             CcceeeeeccccCC
Confidence               12344556543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.5e-14  Score=75.87  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      .+.+++|+|+++.+++++.++.+++||+.+ .+....+..|...+.++. +|++..+++++.|+.+++||++++..+..+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            367899999999999999999999999988 677788888999999999 999999999999999999999998888776


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       257 ~  257 (369)
T 3zwl_B          257 E  257 (369)
T ss_dssp             E
T ss_pred             c
Confidence            5

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.63  E-value=3.4e-15  Score=82.23  Aligned_cols=82  Identities=12%  Similarity=0.173  Sum_probs=69.1

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEE---EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLA---SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+|++. ++++++.|+.+++||+...+...   ...+|...|.++. +|++..+++++.|+.|++||++++.+.
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence            478999999875 78899999999999998655432   3356888999999 999999999999999999999998877


Q ss_pred             EeecCCC
Q psy13945         76 CNIQGPT   82 (86)
Q Consensus        76 ~~~~~~~   82 (86)
                      ..+..|.
T Consensus       332 ~~~~~~~  338 (435)
T 4e54_B          332 LGLIPHP  338 (435)
T ss_dssp             EEECCCC
T ss_pred             eEEeccc
Confidence            7776654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.63  E-value=5.7e-15  Score=80.93  Aligned_cols=81  Identities=12%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             CeeEEEECCCC-CEEEEEeCCCeEEEEEccCCce----EEEEeCCcc------------ceEEEE-eCCCCeEEEEeCCC
Q psy13945          1 LIRCIAVSSSG-SWIAIGQASGVLTLLDLRTGTS----LASWKGHEG------------EILQLV-TADDGTLISSSLDQ   62 (86)
Q Consensus         1 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~------------~v~~~~-~~~~~~~~~~~~~~   62 (86)
                      +|.+++|+|++ .++++++.++.|++||+.+++.    ...+..+..            .|.++. +|++..+++++. +
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            37899999998 9999999999999999988776    677777765            899999 999999999999 9


Q ss_pred             CEEEEeCCC-CeEEEeecCCC
Q psy13945         63 TISAWHTND-GSLKCNIQGPT   82 (86)
Q Consensus        63 ~i~~~~~~~-~~~~~~~~~~~   82 (86)
                      .|++||++. ++++..+.+|.
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCG
T ss_pred             eEEEEeCCCCccccceeeccc
Confidence            999999987 77777777774

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.63  E-value=2e-15  Score=83.55  Aligned_cols=83  Identities=14%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             eeEEEECCCCCEEE----EEeCCCeEEEEEccCC--------ce---EEEEeCCccceEEEE-eCC-CCeEEEEeCCCCE
Q psy13945          2 IRCIAVSSSGSWIA----IGQASGVLTLLDLRTG--------TS---LASWKGHEGEILQLV-TAD-DGTLISSSLDQTI   64 (86)
Q Consensus         2 i~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~--------~~---~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i   64 (86)
                      |.+++|++++++++    +++.++.+++||+.+.        +.   ...+.+|...|.++. +|+ +..+++++.|+.+
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            78999999999998    7888999999998654        11   344556889999999 887 7889999999999


Q ss_pred             EEEeCCCCeEEEeecCCCCC
Q psy13945         65 SAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~   84 (86)
                      ++||++++.......+|...
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGC
T ss_pred             EEEEcCCCcceeeccCCCCc
Confidence            99999988766655555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.62  E-value=7.7e-14  Score=74.09  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             eeEEEECCCC--CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSG--SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +..++|++++  .++++++.++.+++||..+++....+.+|...|.++. +|++..+++++.|+.+++||+++.+++..+
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence            5678888764  5788999999999999999999999999999999999 999999999999999999999999988887


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       254 ~~~  256 (340)
T 4aow_A          254 DGG  256 (340)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.4e-14  Score=84.91  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+| ++++++++.|+++++||+.+++.+..+. +...|.++. +|++..+++++.|+.|++||++++.+.
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            478999999 8899999999999999999988887776 567899999 999999999999999999999987754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.62  E-value=2.1e-14  Score=79.08  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=72.2

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCC---ceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCC-Ce
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTG---TSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTND-GS   73 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~-~~   73 (86)
                      .|.+++|+| ++..+++++.++.|++||+..+   +....+..|...+.++. +|++. .+++++.|+.|++||++. +.
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~  312 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL  312 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence            378999999 6789999999999999999876   45667778999999999 89876 688999999999999987 56


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ++..+.+|...|
T Consensus       313 ~~~~~~~h~~~v  324 (430)
T 2xyi_A          313 KLHSFESHKDEI  324 (430)
T ss_dssp             CSEEEECCSSCE
T ss_pred             CeEEeecCCCCE
Confidence            677777776654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.62  E-value=4e-15  Score=80.86  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=65.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccC----CceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRT----GTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|.+++|+|+++++++++.++.+++||+..    .+....+.+|...|.++. +|+ +..+++++.|+.|++||++++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            478999999999999999999999999987    346777888999999999 888 8999999999999999998775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.62  E-value=2.9e-14  Score=77.13  Aligned_cols=79  Identities=24%  Similarity=0.402  Sum_probs=67.9

Q ss_pred             CeeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEe-------------CCccceEEEE-eC-CCCeEEEEeCCCCE
Q psy13945          1 LIRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWK-------------GHEGEILQLV-TA-DDGTLISSSLDQTI   64 (86)
Q Consensus         1 ~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~-~~-~~~~~~~~~~~~~i   64 (86)
                      +|.+++|+| +++++++++.++.+++||+.++.....+.             +|...|.++. +| ++..+++++.|+.+
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            488999999 99999999999999999998765543332             4888999999 88 77899999999999


Q ss_pred             EEEeCCCCeEEEeec
Q psy13945         65 SAWHTNDGSLKCNIQ   79 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~   79 (86)
                      ++||+.+++....+.
T Consensus       125 ~iwd~~~~~~~~~~~  139 (408)
T 4a11_B          125 KVWDTNTLQTADVFN  139 (408)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEeeCCCCccceecc
Confidence            999999988777665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.7e-15  Score=85.53  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEEEeCCccceEEE--E-eCCC-CeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT-SLASWKGHEGEILQL--V-TADD-GTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~~--~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+++ ..|++|+.|++|++||+.++. ....+.+|...|.++  . ++++ ..+++++.|+++++||++++++.
T Consensus       268 ~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          268 LITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             CEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             CEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            4789999986 479999999999999998764 345678899999999  4 5666 78999999999999999876655


Q ss_pred             EeecCC
Q psy13945         76 CNIQGP   81 (86)
Q Consensus        76 ~~~~~~   81 (86)
                      ..+.+|
T Consensus       347 ~~~~~~  352 (524)
T 2j04_B          347 KTTVSR  352 (524)
T ss_dssp             CEEEEE
T ss_pred             cccccc
Confidence            444443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.61  E-value=2.2e-14  Score=78.96  Aligned_cols=85  Identities=26%  Similarity=0.443  Sum_probs=71.6

Q ss_pred             CeeEEEECCCCC-EEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCC-----
Q psy13945          1 LIRCIAVSSSGS-WIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTND-----   71 (86)
Q Consensus         1 ~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~-----   71 (86)
                      +|.+++|+|++. ++++++.++.|++||+.. ...+..+..|...|.++. +|++. .+++++.|+.|++||++.     
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            478999999887 788999999999999987 556778888999999999 89875 688999999999999976     


Q ss_pred             ---------CeEEEeecCCCCCC
Q psy13945         72 ---------GSLKCNIQGPTEPV   85 (86)
Q Consensus        72 ---------~~~~~~~~~~~~~v   85 (86)
                               ...+..+.+|...|
T Consensus       359 ~~~~~~~~~~~~~~~~~~h~~~v  381 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHGGHTAKI  381 (430)
T ss_dssp             CHHHHHHCCTTEEEECCCCSSCE
T ss_pred             CccccccCCcceEEEcCCCCCCc
Confidence                     35667777776654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.61  E-value=2.2e-14  Score=76.61  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=69.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-e--CCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-T--ADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|+++++++++.++.+++||+.+++... +..|...|.++. .  +++..+++++.|+.+++||+++++++..
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            47899999999999999999999999998887655 456888899887 3  5677899999999999999998887777


Q ss_pred             ecCCC
Q psy13945         78 IQGPT   82 (86)
Q Consensus        78 ~~~~~   82 (86)
                      +..+.
T Consensus       167 ~~~~~  171 (368)
T 3mmy_A          167 LQLPE  171 (368)
T ss_dssp             EECSS
T ss_pred             EecCC
Confidence            76553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.61  E-value=8e-15  Score=78.22  Aligned_cols=85  Identities=16%  Similarity=0.275  Sum_probs=70.4

Q ss_pred             CeeEEEECC---CCCEEEEEeCCCeEEEEEccCCceEEEE-----eCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCC
Q psy13945          1 LIRCIAVSS---SGSWIAIGQASGVLTLLDLRTGTSLASW-----KGHEGEILQLV-TADDG-TLISSSLDQTISAWHTN   70 (86)
Q Consensus         1 ~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~   70 (86)
                      +|.+++|+|   ++..+++++.++.+++||+..++....+     .+|...|.++. +|++. .+++++.|+.+++||++
T Consensus       211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            478999999   8999999999999999998866544333     48899999999 99988 78999999999999987


Q ss_pred             CC-------------------eEEEeecCCCCCC
Q psy13945         71 DG-------------------SLKCNIQGPTEPV   85 (86)
Q Consensus        71 ~~-------------------~~~~~~~~~~~~v   85 (86)
                      .+                   ..+..+.+|...|
T Consensus       291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  324 (357)
T 3i2n_A          291 YPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI  324 (357)
T ss_dssp             CCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred             CCcccccccCCCCccccccccceeeccccCCCCe
Confidence            53                   4566777776654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.60  E-value=7.6e-14  Score=76.81  Aligned_cols=82  Identities=21%  Similarity=0.315  Sum_probs=72.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +|.+++|  +++.+++++.++.+++||+.+++....+.+|...+.++.. ++..+++++.|+.|++||+++++++..+.+
T Consensus       258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  334 (435)
T 1p22_A          258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEG  334 (435)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCCCEEEEEeC
Confidence            3567777  7899999999999999999999999999999999988862 467999999999999999999999999999


Q ss_pred             CCCCC
Q psy13945         81 PTEPV   85 (86)
Q Consensus        81 ~~~~v   85 (86)
                      |...|
T Consensus       335 h~~~v  339 (435)
T 1p22_A          335 HEELV  339 (435)
T ss_dssp             CSSCE
T ss_pred             CcCcE
Confidence            88765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.60  E-value=6.2e-14  Score=75.84  Aligned_cols=78  Identities=19%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC-----------------------------------------------ce
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG-----------------------------------------------TS   33 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------------------~~   33 (86)
                      +|.+++|+|+++++++++.++.+++||+.++                                               +.
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            4789999999999999999999999998653                                               23


Q ss_pred             EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         34 LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        34 ~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ...+.+|...|.++. +|++..+++++.|+.|++|++++++.+...
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence            455667888999999 999999999999999999999988766543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.60  E-value=4.4e-14  Score=77.83  Aligned_cols=77  Identities=27%  Similarity=0.455  Sum_probs=69.5

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCCC
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      ++++++++++++.|+.+++||..+++....+.+|...|.++. .  +..+++++.|+.|++||+.+++++..+.+|...|
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v  202 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV  202 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE
Confidence            445789999999999999999999999999999999999988 6  5689999999999999999999999999888765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.58  E-value=3.2e-15  Score=81.59  Aligned_cols=78  Identities=14%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceE-----EEEeCCccceEEEE-eC--------CCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          8 SSSGSWIAIGQASGVLTLLDLRTGTSL-----ASWKGHEGEILQLV-TA--------DDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         8 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~v~~~~-~~--------~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      .+++.++++++.|+++++||...++..     ..+.+|...|.+++ +|        ++..+++++.|+++++||++++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            445668999999999999999877543     23568999999999 76        67899999999999999998888


Q ss_pred             EEEeecCCCCCC
Q psy13945         74 LKCNIQGPTEPV   85 (86)
Q Consensus        74 ~~~~~~~~~~~v   85 (86)
                      ++..+..|.+.|
T Consensus       178 ~~~~~~~~~~~v  189 (393)
T 4gq1_A          178 PILAGYPLSSPG  189 (393)
T ss_dssp             EEEEEEECSSCE
T ss_pred             eeeeecCCCCCc
Confidence            777776666544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=6.2e-14  Score=81.75  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             CeeEEEECCC--CCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCC--CCeEEEEeCCCCEEEEeCCCC-
Q psy13945          1 LIRCIAVSSS--GSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TAD--DGTLISSSLDQTISAWHTNDG-   72 (86)
Q Consensus         1 ~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~-   72 (86)
                      +|.+++|+++  ++++++++.|+.|++||+.++.  ....+.+|...|.++. +|+  +..+++++.|+.|++||++.+ 
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            4789999988  9999999999999999998876  5667778999999999 898  999999999999999999876 


Q ss_pred             -eEEEeecCCCCCC
Q psy13945         73 -SLKCNIQGPTEPV   85 (86)
Q Consensus        73 -~~~~~~~~~~~~v   85 (86)
                       .....+.+|...|
T Consensus       135 ~~~~~~~~~~~~~v  148 (753)
T 3jro_A          135 TTSPIIIDAHAIGV  148 (753)
T ss_dssp             CCCCEEEECCSSCE
T ss_pred             CcceeEeecCCCce
Confidence             2334445565443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.58  E-value=6e-14  Score=75.76  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             EeCCCeEEEEEccCCc----------------eEEEEeCCccceEEEE-eCCCCeEEEEeCCCC-EEEEeCCCCeEEEee
Q psy13945         17 GQASGVLTLLDLRTGT----------------SLASWKGHEGEILQLV-TADDGTLISSSLDQT-ISAWHTNDGSLKCNI   78 (86)
Q Consensus        17 ~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~   78 (86)
                      |+.++.+++||+.++.                ....+.+|...|.++. +|++..+++++.|++ +++||+++++++..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            6889999999998754                1567889999999999 999999999999998 999999999999999


Q ss_pred             c-C-CCCCC
Q psy13945         79 Q-G-PTEPV   85 (86)
Q Consensus        79 ~-~-~~~~v   85 (86)
                      . + |...|
T Consensus       235 ~~g~h~~~v  243 (355)
T 3vu4_A          235 RRGLDRADV  243 (355)
T ss_dssp             ECTTCCSCE
T ss_pred             EcCCCCCcE
Confidence            7 5 77655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.54  E-value=6.6e-13  Score=73.19  Aligned_cols=80  Identities=25%  Similarity=0.459  Sum_probs=54.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      |.++.+  ++..+++++.++.+++||..+++....+.+|...+.++.. ++..+++++.|+.+++||+++++++..+.+|
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            455665  5666777777777777777777666666666666666643 5666777777777777777777777777666


Q ss_pred             CCC
Q psy13945         82 TEP   84 (86)
Q Consensus        82 ~~~   84 (86)
                      ...
T Consensus       319 ~~~  321 (445)
T 2ovr_B          319 QSL  321 (445)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.54  E-value=1.6e-13  Score=74.27  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             eeEEEECCC----CCEEEEEeC--------------------CCeEEEEEcc-CCceEEEEeCCccceEEEE-eC---CC
Q psy13945          2 IRCIAVSSS----GSWIAIGQA--------------------SGVLTLLDLR-TGTSLASWKGHEGEILQLV-TA---DD   52 (86)
Q Consensus         2 i~~~~~~~~----~~~~~~~~~--------------------~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~-~~---~~   52 (86)
                      |..++++||    ++.+++++.                    ++.|++|++. +++....+..|...+..+. ++   ++
T Consensus       114 v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~  193 (356)
T 2w18_A          114 IRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ  193 (356)
T ss_dssp             EEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST
T ss_pred             eEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC
Confidence            567777787    666666543                    7778888874 4666666677776666666 55   67


Q ss_pred             CeEEEEeCCCCEEEEeCCCCeEEEeecCCC
Q psy13945         53 GTLISSSLDQTISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus        53 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (86)
                      ..+++++.|++|++||+.++++++++.+|.
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             ceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            889999999999999999999999998654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.43  E-value=1e-11  Score=68.00  Aligned_cols=80  Identities=11%  Similarity=0.016  Sum_probs=69.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      |.+++|+++++++++++.++.+++||..+++....+..+...+.++. +|++..++ ++..++.|.+||+++++.+..+.
T Consensus       172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred             eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence            67899999999999999999999999999888888888888899999 99988775 55588999999999998887765


Q ss_pred             CC
Q psy13945         80 GP   81 (86)
Q Consensus        80 ~~   81 (86)
                      .+
T Consensus       252 ~~  253 (433)
T 3bws_A          252 KI  253 (433)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.41  E-value=2.8e-11  Score=65.56  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             eeEEEECCCCCEE-EEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWI-AIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|+|+++.+ ++++.++.+++||..+++....+..+. .+.++. +|++..++ ++..++.|.+||+.+++.+..+
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence            5789999999876 677789999999999998887777554 888999 99988774 5567799999999999888777


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       113 ~~~  115 (391)
T 1l0q_A          113 KTG  115 (391)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.40  E-value=1.1e-12  Score=71.79  Aligned_cols=83  Identities=8%  Similarity=0.116  Sum_probs=69.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-----EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA-----SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +.+++|+|++.++++++.++.+++||..+++...     .+.+|...+.++. ++++..+++++.++.+++||+++++.+
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            3468899988888888889999999999888765     3346777899999 889999999999999999999998888


Q ss_pred             EeecCCCCC
Q psy13945         76 CNIQGPTEP   84 (86)
Q Consensus        76 ~~~~~~~~~   84 (86)
                      ..+..|...
T Consensus       205 ~~~~~~~~~  213 (433)
T 3bws_A          205 ATVDLTGKW  213 (433)
T ss_dssp             EEEECSSSS
T ss_pred             EEEcCCCCC
Confidence            887766543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.38  E-value=7.7e-11  Score=63.85  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             eeEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQ---ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      +.+++|+|+++.+++++   .++.+.+||..+++....+..+. .+.++. +|++..+ ++++.++.+++||+.+++.+.
T Consensus       202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            56889999999888877   68999999999888877777654 467788 8998876 677889999999999999888


Q ss_pred             eecCCC
Q psy13945         77 NIQGPT   82 (86)
Q Consensus        77 ~~~~~~   82 (86)
                      .+..|.
T Consensus       281 ~~~~~~  286 (391)
T 1l0q_A          281 TMAVGK  286 (391)
T ss_dssp             EEECSS
T ss_pred             EEECCc
Confidence            876554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.34  E-value=1.9e-10  Score=63.44  Aligned_cols=80  Identities=15%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCC---eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEE-EEeCCC--CEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASG---VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLI-SSSLDQ--TISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~--~i~~~~~~~~~   73 (86)
                      .+.+++|+|||+.++.++.++   .|++||+.+++.. .+..+...+.++. +|++..++ +++.++  .|.+||+.+++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            367899999999999888775   9999999988764 4566777889999 99999777 666555  49999998876


Q ss_pred             EEEeecCCC
Q psy13945         74 LKCNIQGPT   82 (86)
Q Consensus        74 ~~~~~~~~~   82 (86)
                      . ..+..|.
T Consensus       259 ~-~~l~~~~  266 (415)
T 2hqs_A          259 I-RQVTDGR  266 (415)
T ss_dssp             E-EECCCCS
T ss_pred             E-EeCcCCC
Confidence            5 3444454

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.27  E-value=5e-10  Score=63.79  Aligned_cols=78  Identities=15%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEc--cCCceEEEEeCCccceEEEE-eC----CCCeEEEEe-CCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDL--RTGTSLASWKGHEGEILQLV-TA----DDGTLISSS-LDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~v~~~~-~~----~~~~~~~~~-~~~~i~~~~~~~~~   73 (86)
                      +..++|+|||+++++++.++.|.+||+  .+++.+..+.. ......+. +|    ++..+++++ .++++.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            467899999999999999999999999  78888777764 44567888 89    999888777 58999999999998


Q ss_pred             EEEeecC
Q psy13945         74 LKCNIQG   80 (86)
Q Consensus        74 ~~~~~~~   80 (86)
                      ++..+..
T Consensus       260 ~~~~i~~  266 (543)
T 1nir_A          260 PKQIVST  266 (543)
T ss_dssp             EEEEEEC
T ss_pred             cceeecc
Confidence            8887753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.25  E-value=2.3e-10  Score=68.93  Aligned_cols=80  Identities=13%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC----------CCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD----------QTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~----------~~i~~~~~~   70 (86)
                      +..++|+|||+.++.++.++.+++||+.+++.......+...+..+. +|++..++.++.+          ..+.+||+.
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            57899999999999999999999999999888777767888888899 9999998877654          489999998


Q ss_pred             CCeEEEeecCCC
Q psy13945         71 DGSLKCNIQGPT   82 (86)
Q Consensus        71 ~~~~~~~~~~~~   82 (86)
                      +++ ...+..|.
T Consensus       461 ~g~-~~~l~~~~  471 (1045)
T 1k32_A          461 GRK-IFAATTEN  471 (1045)
T ss_dssp             TTE-EEECSCSS
T ss_pred             CCc-EEEeeCCC
Confidence            877 45554443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.16  E-value=2.3e-09  Score=56.84  Aligned_cols=76  Identities=14%  Similarity=0.067  Sum_probs=62.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.+++|+||++.++++  ++.+.+||..+++....+... ..+.++. +|++..++.++.++.|.+||+.+++.+..+..
T Consensus       243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            3568999999998887  689999999988877666543 4567788 89999888888899999999999988877754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.13  E-value=5e-10  Score=63.73  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             eEEEECCCCCEEEEEeCC----CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC--CEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS----GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ--TISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~--~i~~~~~~~~~~~   75 (86)
                      .+++|+|||+.++.++.+    ..|++||+.+++.. .+..+...+..+. +|++..+++...++  .|.+||+.+++..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            367899999999977766    78999998877754 5566777888899 99999999777777  8999999988777


Q ss_pred             EeecCCC
Q psy13945         76 CNIQGPT   82 (86)
Q Consensus        76 ~~~~~~~   82 (86)
                       .+.+|.
T Consensus       232 -~~~~~~  237 (582)
T 3o4h_A          232 -DLELPS  237 (582)
T ss_dssp             -ECCCSC
T ss_pred             -EccCCC
Confidence             666554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.12  E-value=6.3e-10  Score=64.65  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCEEEEEeC-CC-----eEEEEEccCCceEEEEeCCcc------------------------ceEEEE-eC
Q psy13945          2 IRCIAVSSSGSWIAIGQA-SG-----VLTLLDLRTGTSLASWKGHEG------------------------EILQLV-TA   50 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~------------------------~v~~~~-~~   50 (86)
                      +..++|+|||+.+++++. ++     .+++||+.+++....+..+..                        .+..+. +|
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            678999999999998887 77     899999998887665544322                        267788 99


Q ss_pred             CCCeEEEEeCCCCEEEEeCCCC
Q psy13945         51 DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus        51 ~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      ++..++.++. +.|.+||+.++
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSC
T ss_pred             CCCEEEEEeC-CcEEEEECCCC
Confidence            9999988776 89999999877

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.09  E-value=2.8e-09  Score=60.78  Aligned_cols=74  Identities=11%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC--CCCeEEEeecC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT--NDGSLKCNIQG   80 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~   80 (86)
                      .++|++.+++++..+++|.+||..+++++..+..... +..+. +|++..+++++.++.|.+||+  .+++++..+..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence            3678888999999999999999999999888874333 78888 999999999999999999999  78888777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.09  E-value=1.2e-08  Score=54.39  Aligned_cols=77  Identities=12%  Similarity=-0.028  Sum_probs=62.4

Q ss_pred             eeEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..++++| |++.++.+  ++.+.+||+.+++....+... ..+..+. ++++..++.++.++.+.+||..+++.+..+.
T Consensus       257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            35778899 99998888  789999999988877766533 3456788 8998888778888999999999998888775


Q ss_pred             CC
Q psy13945         80 GP   81 (86)
Q Consensus        80 ~~   81 (86)
                      ..
T Consensus       334 ~~  335 (349)
T 1jmx_B          334 LP  335 (349)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.04  E-value=4.2e-09  Score=58.16  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             eeEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC---CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ---TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~---~i~~~~~~~~~~   74 (86)
                      +.+++|+|||++++.++.+   ..+.+||..+++.. .+..+. .+.++. +|++..++.++.++   .|.+||+. +..
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~  389 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF  389 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc
Confidence            5678999999998877654   68999999887763 344443 778888 99999988877666   79999986 555


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      ...+..|...|
T Consensus       390 ~~~l~~~~~~v  400 (415)
T 2hqs_A          390 KARLPATDGQV  400 (415)
T ss_dssp             EEECCCSSSEE
T ss_pred             EEEeeCCCCCC
Confidence            66666665543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.04  E-value=5.8e-09  Score=54.15  Aligned_cols=82  Identities=15%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEEcc-CCceEEEEeCCccceEEEE-eCCCCeEEEEeCC-----------CCEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQ-ASGVLTLLDLR-TGTSLASWKGHEGEILQLV-TADDGTLISSSLD-----------QTISAW   67 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~-----------~~i~~~   67 (86)
                      +.+++|+|+++.++.++ .++.+.+|++. .+.....+..+...+..+. +|++..++.++.+           ..+.+|
T Consensus       175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            67899999999777655 58889999876 4555566666777788888 8999988777654           569999


Q ss_pred             eCCCCeE--EEeecCCCC
Q psy13945         68 HTNDGSL--KCNIQGPTE   83 (86)
Q Consensus        68 ~~~~~~~--~~~~~~~~~   83 (86)
                      |+.+++.  +..+.+|..
T Consensus       255 d~~~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          255 DMDGGNVETLFDLFGGQG  272 (297)
T ss_dssp             ETTSCSCEEEEEEEESTT
T ss_pred             ecCCCCceeeeccCCCCc
Confidence            9987754  333334443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.01  E-value=1.8e-08  Score=53.81  Aligned_cols=78  Identities=12%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             eeEEEECCCCCEEEEEe--CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQ--ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|+|+++.++.++  .++.+.+||..+++....+......+..+. +|++..++.+..++.+.+||..+++....+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            46789999998777665  478899999998888777764555567778 999999988888999999999999887766


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       223 ~  223 (353)
T 3vgz_A          223 K  223 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.00  E-value=2.6e-08  Score=52.96  Aligned_cols=77  Identities=10%  Similarity=0.117  Sum_probs=58.6

Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEEccCCce-EEEEeCCccceEEEE-eCCCCeEEEEeCC-C--CEEEEeCCCCeEEEe
Q psy13945          4 CIAVSSSGSWIAIGQA-SGVLTLLDLRTGTS-LASWKGHEGEILQLV-TADDGTLISSSLD-Q--TISAWHTNDGSLKCN   77 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~~~~~~~-~--~i~~~~~~~~~~~~~   77 (86)
                      .++|+|+++.++.++. ++.+.+||..+++. ...+..+.....++. +|++..+++...+ +  .|.+||+.+++.+..
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            7899999986555544 88999999988887 556555555555477 8999988855544 3  899999999888777


Q ss_pred             ecC
Q psy13945         78 IQG   80 (86)
Q Consensus        78 ~~~   80 (86)
                      +..
T Consensus       124 ~~~  126 (331)
T 3u4y_A          124 IPI  126 (331)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.99  E-value=7.8e-09  Score=60.17  Aligned_cols=78  Identities=14%  Similarity=0.051  Sum_probs=61.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      +.+++|+|||+.++.++. +.+++||+.++.  ....+..+...+..+. +|++..++.++. ..|.+||+.+++.....
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEec
Confidence            467899999999988876 899999998772  3344556667788999 999999887764 58999999988777655


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       189 ~~~  191 (741)
T 2ecf_A          189 ADG  191 (741)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.97  E-value=3.9e-08  Score=52.53  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC----CccceEEEE-eCCCCeEEEE-eCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG----HEGEILQLV-TADDGTLISS-SLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~~   75 (86)
                      +.+++|+|+++.++.++.++.+.+||..+++....+..    +...+..+. +|++..++.+ ..++.+.+||..+++.+
T Consensus       187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            45678999999999999999999999998888766653    344567788 8998866554 45689999999988877


Q ss_pred             Eeec
Q psy13945         76 CNIQ   79 (86)
Q Consensus        76 ~~~~   79 (86)
                      ..+.
T Consensus       267 ~~~~  270 (353)
T 3vgz_A          267 AKVA  270 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.96  E-value=6.9e-08  Score=52.56  Aligned_cols=72  Identities=10%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             EEECCCCCEEEEEeC-----------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          5 IAVSSSGSWIAIGQA-----------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +++++|+..++....           ...+.+||..+++.+..+..+.  ...+. +|++..+++++. +.|.+||..++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            678999877665532           3489999999999988888765  78889 999998888777 99999999999


Q ss_pred             --eEEEeec
Q psy13945         73 --SLKCNIQ   79 (86)
Q Consensus        73 --~~~~~~~   79 (86)
                        +.+..+.
T Consensus       336 ~l~~~~~i~  344 (361)
T 2oiz_A          336 EPKLLRTIE  344 (361)
T ss_dssp             SCEEEEEET
T ss_pred             cceeeEEec
Confidence              8888864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.94  E-value=4.9e-08  Score=51.73  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             eEEEECCCCCEEEEEe------------CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          3 RCIAVSSSGSWIAIGQ------------ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ..++|+|+++.++.+.            .++.+.+||..+++....+.. ...+..+. +|++..++.+  ++.+.+||+
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~  161 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDP  161 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEET
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEEC
Confidence            4688999998888775            568999999988887766654 34466777 8999877766  688999999


Q ss_pred             CCCeEEEeecC
Q psy13945         70 NDGSLKCNIQG   80 (86)
Q Consensus        70 ~~~~~~~~~~~   80 (86)
                      .+++....+..
T Consensus       162 ~~~~~~~~~~~  172 (337)
T 1pby_B          162 EAGTLVEDKPI  172 (337)
T ss_dssp             TTTEEEEEECS
T ss_pred             CCCcEeeeeec
Confidence            99988776653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.93  E-value=4.8e-09  Score=60.86  Aligned_cols=77  Identities=10%  Similarity=-0.001  Sum_probs=59.3

Q ss_pred             eeEEEECCCCCEEEEEeCC---------CeEEEEEccCCceEEEEe---CCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---------GVLTLLDLRTGTSLASWK---GHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +.+++|+|||+.++.+..+         +.+.+||+.+++. ..+.   .+...+..+. +|++..++.++. +.|.+|+
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            6789999999999988764         7888999988775 2222   2334477788 999999988776 7899999


Q ss_pred             CCCCeEEEeecC
Q psy13945         69 TNDGSLKCNIQG   80 (86)
Q Consensus        69 ~~~~~~~~~~~~   80 (86)
                      ..+++.......
T Consensus       141 ~~~g~~~~~~~~  152 (723)
T 1xfd_A          141 HVGKQAIRVVST  152 (723)
T ss_dssp             SSSSCCEEEECC
T ss_pred             CCCCceEEEecC
Confidence            988877665544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.92  E-value=3.1e-08  Score=52.62  Aligned_cols=78  Identities=10%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             eeEEEECCCCCEEEEEeCC-CeEEEEEcc--CCce--EEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCC---C
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-GVLTLLDLR--TGTS--LASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHTN---D   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~--~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~---~   71 (86)
                      +.+++|+|+++.+++++.+ +.+.+|++.  +++.  ...+.... .+..+. +|++..++.++ .++.+.+|++.   .
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~  118 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  118 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence            4578999999988877776 999999987  4443  33444333 677888 89998776554 57889999994   3


Q ss_pred             CeEEEeecC
Q psy13945         72 GSLKCNIQG   80 (86)
Q Consensus        72 ~~~~~~~~~   80 (86)
                      ......+..
T Consensus       119 ~~~~~~~~~  127 (343)
T 1ri6_A          119 VGVVDVVEG  127 (343)
T ss_dssp             EEEEEEECC
T ss_pred             ccccccccC
Confidence            344444443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.92  E-value=5.4e-09  Score=56.61  Aligned_cols=76  Identities=20%  Similarity=0.160  Sum_probs=58.7

Q ss_pred             EEECCCCCEEEEEeC-CC--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          5 IAVSSSGSWIAIGQA-SG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .+|+|||+.++..+. ++  .|.+||..+++.......+...+.... +|++..++....+..+.+||+.+++....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            679999998887776 56  488889888877665555555554566 89999999999889999999998876655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.91  E-value=1e-07  Score=51.07  Aligned_cols=74  Identities=11%  Similarity=0.211  Sum_probs=53.1

Q ss_pred             eeEEEECCCCCEE-EEEeCCCeEEEEEccC-C--ceEEEEeCCccceEEEE-eCCCCeEEEEeC-CCCEEEE--eCCCCe
Q psy13945          2 IRCIAVSSSGSWI-AIGQASGVLTLLDLRT-G--TSLASWKGHEGEILQLV-TADDGTLISSSL-DQTISAW--HTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~--~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~--~~~~~~   73 (86)
                      +..++|+|||+++ ++...++.+.+|++.. +  +....+..+...+..+. +|++..++.+.. ++.+.+|  |..+++
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            4578999999976 5556689999999862 2  33445555555677888 999998776665 5889999  555565


Q ss_pred             EE
Q psy13945         74 LK   75 (86)
Q Consensus        74 ~~   75 (86)
                      ..
T Consensus       322 l~  323 (347)
T 3hfq_A          322 LS  323 (347)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.90  E-value=3.5e-08  Score=59.71  Aligned_cols=81  Identities=11%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEE-EEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLT-LLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..++|+ ||+.++.++.+..+. +|+...++... +..+...+..+. +|++..++.++.++.+.+||+.+++....+.
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            4678899 998888888888888 89987766543 336677888999 9999999999999999999999988777776


Q ss_pred             CCCCC
Q psy13945         80 GPTEP   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      +|...
T Consensus       418 ~~~~~  422 (1045)
T 1k32_A          418 SREAM  422 (1045)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            66544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.90  E-value=1.2e-09  Score=63.36  Aligned_cols=71  Identities=15%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc---ceEEEE-eCCCCeEEEEeCC---------CCEEEEeC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG---EILQLV-TADDGTLISSSLD---------QTISAWHT   69 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~-~~~~~~~~~~~~~---------~~i~~~~~   69 (86)
                      ..++|+|||+++++ +.++.+++||..+++....+..+..   .+.++. +|++..++.+..+         +.+.+||+
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            46789999997766 6789999999998887777666554   488899 9999999888764         67889999


Q ss_pred             CCCeE
Q psy13945         70 NDGSL   74 (86)
Q Consensus        70 ~~~~~   74 (86)
                      .+++.
T Consensus        99 ~~~~~  103 (723)
T 1xfd_A           99 PHGDP  103 (723)
T ss_dssp             SSCCC
T ss_pred             CCCce
Confidence            88765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=1e-07  Score=49.47  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             eeEEEECCCCCEEE-EEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCC-CCeEEE
Q psy13945          2 IRCIAVSSSGSWIA-IGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHTN-DGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~   76 (86)
                      +..++|+||++.++ ++..++.+.+|++.. ......+..+...+.++. +|++..++..+ .++.+.+|++. .+....
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            46789999999776 777889889988642 233445556677888899 89999777555 58889999875 344444


Q ss_pred             eecCC
Q psy13945         77 NIQGP   81 (86)
Q Consensus        77 ~~~~~   81 (86)
                      .+..|
T Consensus       211 ~~~~~  215 (297)
T 2ojh_A          211 RITDS  215 (297)
T ss_dssp             ECCCC
T ss_pred             EEecC
Confidence            45444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.81  E-value=1e-07  Score=50.75  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=60.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCc-cceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHE-GEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++++++++.++++++.++.|.+||..+++....+.... .....+. +|++..+ ++...++.|.+||+.+++....+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            45678888999999999999999999888877766433 2456777 8998755 566678999999999988776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.81  E-value=9.6e-08  Score=55.48  Aligned_cols=71  Identities=18%  Similarity=0.261  Sum_probs=55.9

Q ss_pred             eeEEEECCCCCEEEEEe---------------------------------CCCeEEEEEccCCceEEEEe--CCccceEE
Q psy13945          2 IRCIAVSSSGSWIAIGQ---------------------------------ASGVLTLLDLRTGTSLASWK--GHEGEILQ   46 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~~~~~--~~~~~v~~   46 (86)
                      +.++.|+|||+.|+.++                                 .+..+.+||+.+++......  .+...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            36789999999998876                                 44679999998877544332  34567888


Q ss_pred             EE-eCCCCeEEEEeCCC-----CEEEEeCCCC
Q psy13945         47 LV-TADDGTLISSSLDQ-----TISAWHTNDG   72 (86)
Q Consensus        47 ~~-~~~~~~~~~~~~~~-----~i~~~~~~~~   72 (86)
                      +. +|++..++.++.+.     .+.+||..++
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            89 99999888876664     8999999988

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.80  E-value=4.1e-07  Score=48.29  Aligned_cols=71  Identities=11%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             eeEEEECCCCCEEE-EEeCCCeEEEEEcc--CC--ceEEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEe--CCCC
Q psy13945          2 IRCIAVSSSGSWIA-IGQASGVLTLLDLR--TG--TSLASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWH--TNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~--~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~--~~~~   72 (86)
                      +..++|+|+++.++ +...++.+.+||+.  .+  +....+..+.. +..+. +|++..++.++ .++.+.+|+  ..++
T Consensus       233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence            34799999998776 55578999999987  22  33344444333 67788 89999877666 679999994  4455


Q ss_pred             e
Q psy13945         73 S   73 (86)
Q Consensus        73 ~   73 (86)
                      .
T Consensus       312 ~  312 (343)
T 1ri6_A          312 L  312 (343)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.77  E-value=3.4e-08  Score=57.46  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             eeEEEECCCCCEEEEEeC---------CCeEEEEEccCCceE--EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQA---------SGVLTLLDLRTGTSL--ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      +.+++|+|||+.++.++.         ++.+++||+.+++..  ..+   ...+..+. +|++..++.+. ++.|++|+.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence            568999999999988776         689999999887752  122   24567788 99999988775 779999999


Q ss_pred             CCCeEEEe
Q psy13945         70 NDGSLKCN   77 (86)
Q Consensus        70 ~~~~~~~~   77 (86)
                      .+++....
T Consensus       138 ~~g~~~~l  145 (719)
T 1z68_A          138 PGDPPFQI  145 (719)
T ss_dssp             TTSCCEEC
T ss_pred             CCCCcEEE
Confidence            88766543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.75  E-value=1.2e-07  Score=50.78  Aligned_cols=68  Identities=10%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             eEEEECCCCCEEEEEeC--CCeEEEEEccCCce--EEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQA--SGVLTLLDLRTGTS--LASWKGHEGEILQLV-TADDGTLISSS-LDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~   70 (86)
                      ..++|+|||++++++..  ++.+.+|++..++.  +..+..+...+..+. +|++..++.++ .++.+.+|++.
T Consensus        43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            46899999994444432  68999999976653  334344556677888 99999887776 77899999985

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.72  E-value=4.1e-08  Score=57.11  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCcc---ceEEEE-eCCCCeEEEEeC---------CCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEG---EILQLV-TADDGTLISSSL---------DQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~v~~~~-~~~~~~~~~~~~---------~~~i~~~~~~   70 (86)
                      .+.|+||+++++. +.++.+++||..+++....+..+..   .+.++. +|++..++.++.         ++.+.+||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            5689999965554 4689999999998887666554433   378888 999999987765         6899999998


Q ss_pred             CCeE
Q psy13945         71 DGSL   74 (86)
Q Consensus        71 ~~~~   74 (86)
                      +++.
T Consensus        99 ~g~~  102 (719)
T 1z68_A           99 NGEF  102 (719)
T ss_dssp             TTEE
T ss_pred             CCcc
Confidence            8876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.72  E-value=1e-06  Score=47.52  Aligned_cols=73  Identities=14%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             eEEEECCCCCEEEEEeCC--CeEEEEEcc--CCc--eEEEEeCCccceEEEE-eCCCCeEEEEe-CCCCEEEE--eCCCC
Q psy13945          3 RCIAVSSSGSWIAIGQAS--GVLTLLDLR--TGT--SLASWKGHEGEILQLV-TADDGTLISSS-LDQTISAW--HTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~--~~~~~   72 (86)
                      ..++|+|||++++.+..+  +.+.+|++.  +++  .+..+.. ...+..+. +|++..++.++ .++.+.+|  |..++
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence            488999999988666554  899999985  344  3334443 44567888 99999887766 67889996  44566


Q ss_pred             eEEE
Q psy13945         73 SLKC   76 (86)
Q Consensus        73 ~~~~   76 (86)
                      +...
T Consensus       341 ~~~~  344 (361)
T 3scy_A          341 LLTD  344 (361)
T ss_dssp             CEEE
T ss_pred             cEee
Confidence            6544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.70  E-value=6.6e-08  Score=55.19  Aligned_cols=71  Identities=13%  Similarity=0.054  Sum_probs=55.0

Q ss_pred             eeEEEECCCCCEEEEEeCCC--eEEEEEccCCceEEEEeCCccceE--------EEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASG--VLTLLDLRTGTSLASWKGHEGEIL--------QLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~--------~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      +..++|+|||+.++++..++  .|++||..+++.. .+..+...+.        ... +|++..++++..++.+++|++ 
T Consensus       197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-  274 (582)
T 3o4h_A          197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-  274 (582)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-
T ss_pred             cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-
Confidence            46789999999999888888  8999999888776 5555543322        223 688888889999999999998 


Q ss_pred             CCeEE
Q psy13945         71 DGSLK   75 (86)
Q Consensus        71 ~~~~~   75 (86)
                       ++..
T Consensus       275 -g~~~  278 (582)
T 3o4h_A          275 -GERV  278 (582)
T ss_dssp             -TEEE
T ss_pred             -CCee
Confidence             6544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.69  E-value=2e-07  Score=54.20  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             eeEEEECCCCCEEEEEeCCC-----eEEEEEccCCceEEEEe-C-Ccc---ceEEEE-eC--CCCeEEEEeCCCCEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASG-----VLTLLDLRTGTSLASWK-G-HEG---EILQLV-TA--DDGTLISSSLDQTISAWH   68 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~-~-~~~---~v~~~~-~~--~~~~~~~~~~~~~i~~~~   68 (86)
                      +..++|+|||+.++.++.++     .+.+||..+++....+. . ...   .+..+. +|  ++..++++..++.+++|.
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            56899999999888876665     89999998883333222 1 211   234566 88  888888888889999998


Q ss_pred             CC-CCeEEEeecCCC
Q psy13945         69 TN-DGSLKCNIQGPT   82 (86)
Q Consensus        69 ~~-~~~~~~~~~~~~   82 (86)
                      +. ++..+..+..+.
T Consensus       340 ~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGE  354 (706)
T ss_dssp             EETTSCEEEECCCSS
T ss_pred             EECCCCEEEecCCCC
Confidence            75 555566665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.69  E-value=9e-07  Score=47.02  Aligned_cols=75  Identities=16%  Similarity=0.052  Sum_probs=54.1

Q ss_pred             EECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEE-EeCCCCEEEEeCCCCeE-EEeecCC
Q psy13945          6 AVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLIS-SSLDQTISAWHTNDGSL-KCNIQGP   81 (86)
Q Consensus         6 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~~   81 (86)
                      .|.+++ ..+++...++.|.+||..+++.......+.... .+. +|++..++. ...++.|.+||..+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            455554 457788889999999999998877766555555 888 899986654 45588999999988776 5555433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.67  E-value=6.6e-07  Score=51.73  Aligned_cols=78  Identities=13%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             eeEEEECCCCCEEEEEeCC--------CeEEEEEcc-CC---ceEEEEeCCccceEEEE-eCCCCeEEEEeCCC--CEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS--------GVLTLLDLR-TG---TSLASWKGHEGEILQLV-TADDGTLISSSLDQ--TISA   66 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~---~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~--~i~~   66 (86)
                      +..++|+|||+.|+..+.+        ..|++||+. ++   +.......+...+..+. +|++..++++..++  .|..
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHR  269 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEE
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEE
Confidence            3457899999998876644        479999998 56   33333344467788888 89999777887777  5666


Q ss_pred             EeCCCCeEEEeec
Q psy13945         67 WHTNDGSLKCNIQ   79 (86)
Q Consensus        67 ~~~~~~~~~~~~~   79 (86)
                      |+..+++......
T Consensus       270 ~~~~~~~~~~l~~  282 (662)
T 3azo_A          270 VDPATGAATQLCR  282 (662)
T ss_dssp             ECTTTCCEEESSC
T ss_pred             EECCCCceeeccc
Confidence            6665666554443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.66  E-value=2.3e-06  Score=45.65  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC----CCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD----QTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~----~~i~~~~~~~~~~~   75 (86)
                      +.+++|++++++++++..++.|.+||..+++...........+.++. .+++.++++...+    +.|.+||..++...
T Consensus        47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            46789999999888888889999999887776544434556788898 8999888777666    68999998766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.63  E-value=2.1e-06  Score=45.26  Aligned_cols=72  Identities=7%  Similarity=-0.145  Sum_probs=58.6

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      ..+++|+++++ +++++..++.|..|+...+  ...+..+...+..+. .+++.++++...++.|.+|+..+++..
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            45789999998 7888888999999998776  555666667788888 899998888777889999999777644

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.63  E-value=2.2e-06  Score=45.82  Aligned_cols=73  Identities=21%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             eeEEEECCCCCEEEEEeCC---C--eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC---------------
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---G--VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL---------------   60 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~---------------   60 (86)
                      +..+.|+|||+.++..+.+   +  .|.++++..++........ . +..+. +|++..++....               
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            4678999999988766543   2  4778888777654444333 3 78888 899998876653               


Q ss_pred             ------------CCCEEEEeCCCCeEEE
Q psy13945         61 ------------DQTISAWHTNDGSLKC   76 (86)
Q Consensus        61 ------------~~~i~~~~~~~~~~~~   76 (86)
                                  ...|.+|++.+++.+.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEe
Confidence                        2568889998887633

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.59  E-value=3e-07  Score=54.06  Aligned_cols=72  Identities=8%  Similarity=0.037  Sum_probs=55.5

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccc---e--EEEE-eCCCCeEEEEeCC---------CCEEEE
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGE---I--LQLV-TADDGTLISSSLD---------QTISAW   67 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---v--~~~~-~~~~~~~~~~~~~---------~~i~~~   67 (86)
                      ..+.|+||+++++++  ++.|++||..+++....+.++...   +  ..+. +|++..++.+..+         +.+.+|
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            468999999988886  899999999998877666665432   2  2367 8999998877765         456799


Q ss_pred             eCCCCeEEE
Q psy13945         68 HTNDGSLKC   76 (86)
Q Consensus        68 ~~~~~~~~~   76 (86)
                      |+.+++...
T Consensus        98 d~~~~~~~~  106 (740)
T 4a5s_A           98 DLNKRQLIT  106 (740)
T ss_dssp             ETTTTEECC
T ss_pred             ECCCCcEEE
Confidence            999887543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.58  E-value=4.9e-06  Score=44.88  Aligned_cols=73  Identities=14%  Similarity=0.323  Sum_probs=50.7

Q ss_pred             eeEEEECCCCCEEEE-EeCCCeEEEEEccCCc-------eE-----EEE-eCCccceEEEE-eCCCCeEEEEe-CCCCEE
Q psy13945          2 IRCIAVSSSGSWIAI-GQASGVLTLLDLRTGT-------SL-----ASW-KGHEGEILQLV-TADDGTLISSS-LDQTIS   65 (86)
Q Consensus         2 i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-------~~-----~~~-~~~~~~v~~~~-~~~~~~~~~~~-~~~~i~   65 (86)
                      +.+++|+|||+.++. ...++.+.+|++....       ..     ... .........+. +|++..++... .++.+.
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  236 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI  236 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence            367999999986554 4457899999876433       11     111 22344567788 89998776555 689999


Q ss_pred             EEeCCCCeE
Q psy13945         66 AWHTNDGSL   74 (86)
Q Consensus        66 ~~~~~~~~~   74 (86)
                      +|++.++..
T Consensus       237 v~~~~~g~~  245 (361)
T 3scy_A          237 AFRYADGML  245 (361)
T ss_dssp             EEEEETTEE
T ss_pred             EEEecCCce
Confidence            999987643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.58  E-value=3.3e-06  Score=44.20  Aligned_cols=69  Identities=12%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             eeEEEECCCCCEEEEEeCCC-eEEEEEccCCceEEEEeCCc--cceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASG-VLTLLDLRTGTSLASWKGHE--GEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~--~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +..++++++|+++++...++ .|.+|+. .++.+..+..+.  .....+. .+++.++++ +.++.|++|++...
T Consensus       209 p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          209 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            46789999999888887775 9999994 455555554332  2466788 899887777 57899999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.58  E-value=8e-07  Score=48.42  Aligned_cols=74  Identities=16%  Similarity=0.032  Sum_probs=57.1

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCC------ccceEEEE-eCCCCeEEEEeC--CCCE
Q psy13945          4 CIAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGH------EGEILQLV-TADDGTLISSSL--DQTI   64 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~------~~~v~~~~-~~~~~~~~~~~~--~~~i   64 (86)
                      .++|+||+++++.+.          .++.|.+||..+.+....+...      ......+. +|++..++.+..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            689999999988876          3567999999888887666432      12334567 899999887763  6789


Q ss_pred             EEEeCCCCeEEEe
Q psy13945         65 SAWHTNDGSLKCN   77 (86)
Q Consensus        65 ~~~~~~~~~~~~~   77 (86)
                      .+||..+++.+..
T Consensus       134 ~v~d~~~~~~~~~  146 (361)
T 2oiz_A          134 GIVDVAKGDYVED  146 (361)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEECCCCcEEEE
Confidence            9999999887776

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.57  E-value=4.4e-07  Score=52.42  Aligned_cols=70  Identities=9%  Similarity=-0.006  Sum_probs=52.3

Q ss_pred             eeEEEECCCCCEEEEEeCC----------CeEEEEEccC------CceEEEEe-CCccceEEEE-eCCCCeEEEEeCC--
Q psy13945          2 IRCIAVSSSGSWIAIGQAS----------GVLTLLDLRT------GTSLASWK-GHEGEILQLV-TADDGTLISSSLD--   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~------~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~--   61 (86)
                      +..++|+|||+.|+.++.+          ..|++||+..      ++. ..+. .+...+..+. +|++..++..+.+  
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence            4678999999998887766          5899999887      444 3444 4445666777 8999998866644  


Q ss_pred             ------CCEEEEeCC-CC
Q psy13945         62 ------QTISAWHTN-DG   72 (86)
Q Consensus        62 ------~~i~~~~~~-~~   72 (86)
                            ..|.+|++. ++
T Consensus       211 ~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CCTTTCEEEEEEEECTTS
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence                  379999998 56

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.56  E-value=6.9e-06  Score=47.51  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEcc--CCceEEEEeCCccceEEEE-e----CCCCeEEEE-eCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLR--TGTSLASWKGHEGEILQLV-T----ADDGTLISS-SLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~-~----~~~~~~~~~-~~~~~i~~~~~~~~~   73 (86)
                      +..+.|+|||+++++++.++.|.++|+.  +++....+..... -..+. +    |++.+++.+ ..++.+.++|..+.+
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            4578999999999999999999999985  7777766654333 35666 7    688877655 466899999998888


Q ss_pred             EEEeec
Q psy13945         74 LKCNIQ   79 (86)
Q Consensus        74 ~~~~~~   79 (86)
                      .+..+.
T Consensus       278 ~~~~i~  283 (567)
T 1qks_A          278 PKKIQS  283 (567)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            776653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.54  E-value=6.8e-07  Score=52.58  Aligned_cols=71  Identities=10%  Similarity=0.032  Sum_probs=55.9

Q ss_pred             EEEECCCCCEEEEEeCC---------CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          4 CIAVSSSGSWIAIGQAS---------GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ...|||||+.++.++.+         +.+.+||+.+++.. .+..+...+.... +|++..++.. .++.|.+|+..++.
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            47899999999888775         55679999888753 3455667788888 9999998776 56889999998776


Q ss_pred             EEE
Q psy13945         74 LKC   76 (86)
Q Consensus        74 ~~~   76 (86)
                      ..+
T Consensus       144 ~~~  146 (740)
T 4a5s_A          144 SYR  146 (740)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.53  E-value=5.3e-06  Score=44.52  Aligned_cols=71  Identities=10%  Similarity=0.070  Sum_probs=56.9

Q ss_pred             eeEEEECCCCCEEEEEeCC------------------------CeEEEEEccCCceEEEEe-CCccceEEEE-eCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS------------------------GVLTLLDLRTGTSLASWK-GHEGEILQLV-TADDGTL   55 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~~~~   55 (86)
                      +.+++++++|+++++...+                        +.+.+||..+++....+. ++-.....++ .+++.++
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~  105 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW  105 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence            6789999999999888777                        479999988888766554 2334667888 8999988


Q ss_pred             EEEeCCCCEEEEeCCCC
Q psy13945         56 ISSSLDQTISAWHTNDG   72 (86)
Q Consensus        56 ~~~~~~~~i~~~~~~~~   72 (86)
                      ++...++.|..|+....
T Consensus       106 v~d~~~~~v~~~~~~g~  122 (329)
T 3fvz_A          106 VTDVALHQVFKLDPHSK  122 (329)
T ss_dssp             EEETTTTEEEEECTTCS
T ss_pred             EEECCCCEEEEEeCCCC
Confidence            88888999999997543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.52  E-value=5.2e-07  Score=48.88  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=53.4

Q ss_pred             eEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          3 RCIAVSSSGSWIAIGQAS---GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ..++|+|||+.++.....   ..+.+||...++................ +|++..++....+..+.+|++.+++.....
T Consensus        39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~  118 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY  118 (396)
T ss_dssp             TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence            456799999987765433   4688889887765433332222222255 899999988888889999999887765554


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       119 ~  119 (396)
T 3c5m_A          119 T  119 (396)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.50  E-value=9.8e-06  Score=43.49  Aligned_cols=77  Identities=13%  Similarity=0.208  Sum_probs=58.7

Q ss_pred             eeEEEECC-CCCEEEEEe-CCCeEEEEEccCCceEEEEeCC----------ccceEEEE-eCC-CCeEEEEeCCCCEEEE
Q psy13945          2 IRCIAVSS-SGSWIAIGQ-ASGVLTLLDLRTGTSLASWKGH----------EGEILQLV-TAD-DGTLISSSLDQTISAW   67 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~----------~~~v~~~~-~~~-~~~~~~~~~~~~i~~~   67 (86)
                      ...++++| ++.++++.+ .++.|++|+ ..++....+...          -.....+. .++ +.++++...++.|++|
T Consensus       145 P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~  223 (329)
T 3fvz_A          145 PTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF  223 (329)
T ss_dssp             EEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence            46799999 788888886 689999999 556665554321          12367788 888 7788888889999999


Q ss_pred             eCCCCeEEEeec
Q psy13945         68 HTNDGSLKCNIQ   79 (86)
Q Consensus        68 ~~~~~~~~~~~~   79 (86)
                      +..+++.+..+.
T Consensus       224 ~~~~G~~~~~~~  235 (329)
T 3fvz_A          224 KTDTKEFVREIK  235 (329)
T ss_dssp             ETTTCCEEEEEC
T ss_pred             ECCCCcEEEEEe
Confidence            998788777663

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.49  E-value=2.6e-06  Score=49.94  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=51.5

Q ss_pred             eeEEEECCCCCEEEEEeCCC-----eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCC------------
Q psy13945          2 IRCIAVSSSGSWIAIGQASG-----VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT------------   63 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~------------   63 (86)
                      +..++|+|||++++.+..++     .|++||+.+++....... ...+..+. +|++..++.+..+..            
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            46789999999887655433     899999998887543222 22255677 899998887766554            


Q ss_pred             ----EEEEeCCCCe
Q psy13945         64 ----ISAWHTNDGS   73 (86)
Q Consensus        64 ----i~~~~~~~~~   73 (86)
                          |.+|++.++.
T Consensus       206 ~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQ  219 (710)
T ss_dssp             CCCEEEEEETTSCG
T ss_pred             CCCEEEEEECCCCc
Confidence                9999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.48  E-value=1.3e-05  Score=41.92  Aligned_cols=76  Identities=12%  Similarity=0.239  Sum_probs=56.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeEEEEeCCC-CEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTLISSSLDQ-TISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~   77 (86)
                      +.+++++++++++++...++.|.+||. .++....+...  ......+. .+++..+++...++ .|.+|+. +++.+..
T Consensus       166 p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~  243 (286)
T 1q7f_A          166 PNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA  243 (286)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred             cEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence            568999999998888888899999996 45555555433  24667888 88998888888776 9999995 4555555


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       244 ~~  245 (286)
T 1q7f_A          244 LE  245 (286)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.47  E-value=9.8e-07  Score=51.60  Aligned_cols=71  Identities=20%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             eeEEEECCCCCEEE-----EEeCCCeEEEEEccCCceE-EEEeCCccceEEEE-eCCCCeEEEEeCCCC-----------
Q psy13945          2 IRCIAVSSSGSWIA-----IGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV-TADDGTLISSSLDQT-----------   63 (86)
Q Consensus         2 i~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~-----------   63 (86)
                      +..++|||||++++     .|+.+..|++||+.+++.. .... .......+. +|++..++..+.+..           
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            56789999999888     3444578999999988764 1111 111114567 899999888877665           


Q ss_pred             --EEEEeCCCCe
Q psy13945         64 --ISAWHTNDGS   73 (86)
Q Consensus        64 --i~~~~~~~~~   73 (86)
                        |.+|++.++.
T Consensus       202 ~~v~~~~l~t~~  213 (695)
T 2bkl_A          202 TTIRYHTLGTEP  213 (695)
T ss_dssp             CEEEEEETTSCG
T ss_pred             CEEEEEECCCCc
Confidence              9999987664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.46  E-value=1e-05  Score=43.95  Aligned_cols=72  Identities=8%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             eeEEEECCCCCEEEEEeC-CCeEEEEEcc-CCceE--EEEe--CCccceEEEE-eCCCCeEEEEe-CCCCEEEEeCC--C
Q psy13945          2 IRCIAVSSSGSWIAIGQA-SGVLTLLDLR-TGTSL--ASWK--GHEGEILQLV-TADDGTLISSS-LDQTISAWHTN--D   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~~--~~~~--~~~~~v~~~~-~~~~~~~~~~~-~~~~i~~~~~~--~   71 (86)
                      +.+++|+|||+++++++. +..|.+|+.. +++..  ..+.  .+......+. +|++..++... .++.+.+|++.  +
T Consensus       147 ~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            568999999998776654 6799999987 66643  2333  1245577888 99998887665 46889999764  4


Q ss_pred             Ce
Q psy13945         72 GS   73 (86)
Q Consensus        72 ~~   73 (86)
                      ++
T Consensus       227 g~  228 (365)
T 1jof_A          227 HM  228 (365)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.46  E-value=1.2e-06  Score=47.51  Aligned_cols=71  Identities=10%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             eeEEE-ECCCCCEEEEEeCCC------eEEEEEcc-CCceEE---EEeCCccceEEEE-eC---CCCeEEEEeC-CCCEE
Q psy13945          2 IRCIA-VSSSGSWIAIGQASG------VLTLLDLR-TGTSLA---SWKGHEGEILQLV-TA---DDGTLISSSL-DQTIS   65 (86)
Q Consensus         2 i~~~~-~~~~~~~~~~~~~~~------~v~~~~~~-~~~~~~---~~~~~~~~v~~~~-~~---~~~~~~~~~~-~~~i~   65 (86)
                      +..++ |+|||++++++....      .+.+|++. +++...   ....+......+. +|   ++..++.+.. ++.|.
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            45788 999999887665433      89999986 555432   1222333344566 77   7888888776 48999


Q ss_pred             EEeCCCC
Q psy13945         66 AWHTNDG   72 (86)
Q Consensus        66 ~~~~~~~   72 (86)
                      +|++...
T Consensus       336 v~~~~~~  342 (365)
T 1jof_A          336 IYRWKDE  342 (365)
T ss_dssp             EEEEETT
T ss_pred             EEEEchh
Confidence            9988655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.44  E-value=8.8e-06  Score=45.16  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=43.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      |+.++|  |+..++.+ .++.|++||+...........+...+..+. .+.  .++.+..|+.+.+||+.++.
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~  157 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS  157 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence            567778  77777777 678888888765554444444555565554 221  26677777888888876554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.40  E-value=7.1e-06  Score=43.31  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCc-cceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHE-GEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .++.+++++.++.+.+||..+++.+-.+..+. ..+.++. .|++..++  +.+..+..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence            46889999999999999988999988777654 4667788 89999888  45677999998 7888877764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.36  E-value=3.2e-05  Score=40.70  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEcc-CCce---EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLR-TGTS---LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKC   76 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~   76 (86)
                      ...++|+||++.+++...++.+.+|+.. .++.   ...+.........+. .+++.++++.  ++.|.+|+.. ++.+.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence            4678999999988777778899999986 4544   223322334455677 8888877666  7889999976 66666


Q ss_pred             eecCC
Q psy13945         77 NIQGP   81 (86)
Q Consensus        77 ~~~~~   81 (86)
                      .+..+
T Consensus       251 ~~~~~  255 (296)
T 3e5z_A          251 RVLTP  255 (296)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            65543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.34  E-value=1.3e-05  Score=42.39  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +++.++|+++++...++.+..||.. ++.+-.+... ....+.. .+++..+++...++.+..+|..+++.+..+.
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            4567899999999999999999987 8887776654 3344556 7889999988888899999999899888775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.24  E-value=1.8e-05  Score=46.47  Aligned_cols=69  Identities=13%  Similarity=-0.026  Sum_probs=49.7

Q ss_pred             eEEEECCCCCEEEEEeCCCe----------------EEEEEccCCceE--EEEeC--CccceEEEE-eCCCCeEEEEeC-
Q psy13945          3 RCIAVSSSGSWIAIGQASGV----------------LTLLDLRTGTSL--ASWKG--HEGEILQLV-TADDGTLISSSL-   60 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~--~~~~~--~~~~v~~~~-~~~~~~~~~~~~-   60 (86)
                      ..++|+|||+.|+.+..+..                |++|++.++...  ..+..  +...+..+. +|++..++.... 
T Consensus       174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence            46899999998887776655                999998876532  22232  334567778 999998876543 


Q ss_pred             ----CCCEEEEeCCC
Q psy13945         61 ----DQTISAWHTND   71 (86)
Q Consensus        61 ----~~~i~~~~~~~   71 (86)
                          +..+.+||+.+
T Consensus       254 ~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          254 GCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             SSSSCCEEEEEEGGG
T ss_pred             cCCCccEEEEEECcc
Confidence                56899999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.22  E-value=1.7e-05  Score=44.07  Aligned_cols=76  Identities=17%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCCc-------cceEEEE-eCCCCeEEEEeC--CCC
Q psy13945          4 CIAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGHE-------GEILQLV-TADDGTLISSSL--DQT   63 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-------~~v~~~~-~~~~~~~~~~~~--~~~   63 (86)
                      .++++|||+.++.+.          .+..|.+||..+.+....+....       ..-..+. +|++..++....  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            388999999877654          35789999999998877664211       1223456 899998876653  688


Q ss_pred             EEEEeCCCCeEEEeec
Q psy13945         64 ISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~   79 (86)
                      +.++|..+++.+..+.
T Consensus       162 VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCcEEEEEE
Confidence            9999999998877663

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.19  E-value=0.00011  Score=40.48  Aligned_cols=73  Identities=14%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             EEECCCCCEEEEEeC----------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEe-CCCCEEEEeCCC
Q psy13945          5 IAVSSSGSWIAIGQA----------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSS-LDQTISAWHTND   71 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~-~~~~i~~~~~~~   71 (86)
                      +.+++|+..++....          .+.|.++|..+++.+..+... .....+. ++++. .++++. .++.|.++|..+
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            678888877666543          357999999999988877543 3457788 89988 677766 589999999999


Q ss_pred             CeEEEee
Q psy13945         72 GSLKCNI   78 (86)
Q Consensus        72 ~~~~~~~   78 (86)
                      ++.+..+
T Consensus       351 ~~vv~~i  357 (373)
T 2mad_H          351 GDQDQST  357 (373)
T ss_pred             CCEEeee
Confidence            9888773

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.16  E-value=0.00011  Score=39.85  Aligned_cols=74  Identities=12%  Similarity=-0.046  Sum_probs=53.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEE--EE-eCCCCeEEEE----------------------
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQ--LV-TADDGTLISS----------------------   58 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~--~~-~~~~~~~~~~----------------------   58 (86)
                      ...|+||++.|+.++.+..+++||+.+++.......+...+..  .. ++++..++..                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            4579999999999998999999999988876655555443322  23 6778777632                      


Q ss_pred             eCCCCEEEEeCCCCeEEEe
Q psy13945         59 SLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus        59 ~~~~~i~~~~~~~~~~~~~   77 (86)
                      ..+..|.+||+.+++....
T Consensus       165 ~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEE
T ss_pred             CCcceEEEEECCCCceEEe
Confidence            2346788999888765443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.16  E-value=7.4e-05  Score=41.55  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE--EEee
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL--KCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~   78 (86)
                      +.++.+.+.  .++....+|.+.+||+..+....    ....|.+++ +|++  ++.+..|+.+++|+...+..  ..++
T Consensus       129 v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          129 VFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             EEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             eeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence            344555443  37778899999999998776532    345789999 9998  67788999999998877765  4445

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.15  E-value=0.00013  Score=40.20  Aligned_cols=73  Identities=15%  Similarity=0.073  Sum_probs=54.2

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCC-------ccceEEEE-eCCCCeEEEEeC--CCC
Q psy13945          4 CIAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGH-------EGEILQLV-TADDGTLISSSL--DQT   63 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~-~~~~~~~~~~~~--~~~   63 (86)
                      .++++||++.++.+.          .+..+.++|..+.+....+...       ...-..+. +|++..++.+..  +..
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            688999999888775          3578999999888776655322       11223567 899999887763  578


Q ss_pred             EEEEeCCCCeEEEe
Q psy13945         64 ISAWHTNDGSLKCN   77 (86)
Q Consensus        64 i~~~~~~~~~~~~~   77 (86)
                      |.++| .+++.+..
T Consensus       150 v~viD-~t~~~~~~  162 (373)
T 2mad_H          150 VGLVV-QGGSSDDQ  162 (373)
T ss_pred             EEEEE-CCCCEEeE
Confidence            99999 98887766

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.15  E-value=5.4e-05  Score=41.01  Aligned_cols=70  Identities=13%  Similarity=-0.048  Sum_probs=46.4

Q ss_pred             eeEEEECCCCCEEEEEeCC-----CeEEEEEccCCceEEEEeCCccceEEEE-eC-CCCeEEEEe---------------
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-----GVLTLLDLRTGTSLASWKGHEGEILQLV-TA-DDGTLISSS---------------   59 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~---------------   59 (86)
                      +..+.|+|||+.++..+.+     +.|++||+.+++........ . .. .. +| ++..++...               
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence            4567999999876655433     45999998877653322211 1 22 56 77 888877654               


Q ss_pred             -CCCCEEEEeCCCCeE
Q psy13945         60 -LDQTISAWHTNDGSL   74 (86)
Q Consensus        60 -~~~~i~~~~~~~~~~   74 (86)
                       .+..+.+||..+++.
T Consensus       317 ~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             CCCCEEEEEETTTTBC
T ss_pred             CCCCcEEEEecccCce
Confidence             346799999887653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.15  E-value=7.2e-06  Score=44.90  Aligned_cols=68  Identities=13%  Similarity=0.226  Sum_probs=45.2

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++..+++++.++.+..||..+++..-.+..  ..+.+.. ..++..++.++.|+.+..||..+++.+..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            577888999999999999999988766554  3333333 4566677888899999999998887665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.14  E-value=4.4e-05  Score=39.47  Aligned_cols=71  Identities=13%  Similarity=0.036  Sum_probs=53.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.++++.++|.++++...++.|.+|+...................+. .+++..+++...++.|.+++....
T Consensus       194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            46789999998888877788999999765443322222234577888 888988889899999999987643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.12  E-value=5.2e-05  Score=40.79  Aligned_cols=75  Identities=4%  Similarity=0.043  Sum_probs=53.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE-E-eCCccceEEEE-eC-CCCeEEEE----eCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-W-KGHEGEILQLV-TA-DDGTLISS----SLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~~~~~v~~~~-~~-~~~~~~~~----~~~~~i~~~~~~~~~   73 (86)
                      ...++++|++..++....  .+.++|..+++.... + .........+. .| ++..+++.    ..++.|.+|+.. ++
T Consensus       227 p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             ceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            467899999988887764  899999887765321 1 11134567788 87 56677776    677899999987 77


Q ss_pred             EEEeec
Q psy13945         74 LKCNIQ   79 (86)
Q Consensus        74 ~~~~~~   79 (86)
                      .+..+.
T Consensus       304 ~~~~i~  309 (328)
T 3dsm_A          304 LIDEFY  309 (328)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.11  E-value=4.8e-05  Score=44.67  Aligned_cols=71  Identities=13%  Similarity=-0.003  Sum_probs=49.4

Q ss_pred             eEEEECCCCCEEEEEeCCCe-------------EEEEEccCCce--EEEEe--CCccceEEEE-eCCCCeEEEEeCCC--
Q psy13945          3 RCIAVSSSGSWIAIGQASGV-------------LTLLDLRTGTS--LASWK--GHEGEILQLV-TADDGTLISSSLDQ--   62 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~--~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~--   62 (86)
                      ..++|+|||+.|+.++.+..             |++|++.++..  ...+.  .+...+..+. +|++..++..+.+.  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            46789999999888877665             99999887653  22222  2345677888 99999887665544  


Q ss_pred             --CEEEEeCCCCe
Q psy13945         63 --TISAWHTNDGS   73 (86)
Q Consensus        63 --~i~~~~~~~~~   73 (86)
                        .+.+++..++.
T Consensus       251 ~~~l~~~~~~~~~  263 (695)
T 2bkl_A          251 ENDVYWKRPGEKD  263 (695)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             ceEEEEEcCCCCc
Confidence              56666654443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.10  E-value=0.00015  Score=38.22  Aligned_cols=70  Identities=4%  Similarity=0.042  Sum_probs=53.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~~   71 (86)
                      ...++++++|++.++...++.|..||..+++....+..+...+.++. .+++. ++++...++.|..++...
T Consensus       228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            35678899999888877788999999876766666655556778888 88888 555666678898888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.09  E-value=0.00017  Score=38.19  Aligned_cols=79  Identities=13%  Similarity=0.045  Sum_probs=55.9

Q ss_pred             eEEEECCCCCEE-EEEeCCCeEEEEEc--cCCceE--E---EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          3 RCIAVSSSGSWI-AIGQASGVLTLLDL--RTGTSL--A---SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~v~~~~~--~~~~~~--~---~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ..++|+||++.+ ++....+.|.+|+.  .++...  .   .+.........+. .+++.++++....+.|..|+..+++
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            578999999865 55666788999987  345432  1   1122234556777 7889888888788889999998888


Q ss_pred             EEEeecCC
Q psy13945         74 LKCNIQGP   81 (86)
Q Consensus        74 ~~~~~~~~   81 (86)
                      .+..+..+
T Consensus       232 ~~~~i~~p  239 (297)
T 3g4e_A          232 RLQTVKLP  239 (297)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            77776544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.08  E-value=0.00017  Score=39.87  Aligned_cols=75  Identities=8%  Similarity=0.071  Sum_probs=56.5

Q ss_pred             EEECCCCCEEEEEeC---------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEe-CCCCEEEEeCCCC
Q psy13945          5 IAVSSSGSWIAIGQA---------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSS-LDQTISAWHTNDG   72 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~-~~~~i~~~~~~~~   72 (86)
                      +++++|+..++.+..         ...+.++|..+.+.+.++.... ....+. ++++. .+++.. .++.+.++|..++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            678999887775432         2356699999998877765432 456778 88887 566766 5999999999999


Q ss_pred             eEEEeecC
Q psy13945         73 SLKCNIQG   80 (86)
Q Consensus        73 ~~~~~~~~   80 (86)
                      +.+..+.-
T Consensus       348 kvv~~I~v  355 (368)
T 1mda_H          348 QDQSSVEL  355 (368)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEEEC
Confidence            99988754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.06  E-value=0.00013  Score=37.73  Aligned_cols=72  Identities=7%  Similarity=0.031  Sum_probs=53.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +.+++++++++++++...++.|.+||...................+. .+++..+++...++.|..|+.....
T Consensus       152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             ceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            35688999999877777788999999776554332223335567888 8888888888888899999986543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.99  E-value=0.00033  Score=37.72  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ..+.+. +++++++...++.+.++|..+++.+..+.. ......+. ++++..+++...++.|.++|..+++....+.
T Consensus        47 ~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           47 QSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             EEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            345553 456666777789999999999998877753 34456777 6888665666588999999999988776654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.99  E-value=0.00022  Score=41.41  Aligned_cols=69  Identities=12%  Similarity=0.027  Sum_probs=54.4

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC--CCeEEEeec
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN--DGSLKCNIQ   79 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~   79 (86)
                      ++.++++...++.+.++|..+++.+..+... .....+. +|++..++.++.++.|.+||+.  +++.+..+.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            3456778888899999999999988777642 3456778 9999999888899999999995  666555553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.93  E-value=0.00044  Score=37.40  Aligned_cols=80  Identities=13%  Similarity=-0.016  Sum_probs=56.6

Q ss_pred             eeEEEECCCCCEEEEEeC-----CCeEEEEEccCCceEEEEeCC------ccceEEEE-eCC-CCeEEEEe---CCCCEE
Q psy13945          2 IRCIAVSSSGSWIAIGQA-----SGVLTLLDLRTGTSLASWKGH------EGEILQLV-TAD-DGTLISSS---LDQTIS   65 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~------~~~v~~~~-~~~-~~~~~~~~---~~~~i~   65 (86)
                      +.++++++++++.++...     ...|.+||..+++....+...      ......+. .++ +..+++..   .++.|.
T Consensus        69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~  148 (343)
T 2qe8_A           69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI  148 (343)
T ss_dssp             EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred             eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence            578999999987776543     578999999888876655422      12346677 765 45556655   678999


Q ss_pred             EEeCCCCeEEEeecCC
Q psy13945         66 AWHTNDGSLKCNIQGP   81 (86)
Q Consensus        66 ~~~~~~~~~~~~~~~~   81 (86)
                      +||..+++....+.+|
T Consensus       149 v~d~~~g~~~r~~~~~  164 (343)
T 2qe8_A          149 RVDLQTGLAARVLQGY  164 (343)
T ss_dssp             EEETTTCCEEEECTTC
T ss_pred             EEECCCCCEEEEecCC
Confidence            9999888776666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.92  E-value=0.00018  Score=40.51  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             EEECCCCCEEEEEeC----------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEe-CCCCEEEEeCCC
Q psy13945          5 IAVSSSGSWIAIGQA----------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSS-LDQTISAWHTND   71 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~-~~~~i~~~~~~~   71 (86)
                      +++++|+..++....          .+.|.+.|..+.+.+.++.... ....+. ++++. .+++.. .++.|.++|..+
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            678888876665432          3579999999999988775422 356777 89988 777776 589999999999


Q ss_pred             CeEEEee
Q psy13945         72 GSLKCNI   78 (86)
Q Consensus        72 ~~~~~~~   78 (86)
                      ++.+..+
T Consensus       403 ~kvv~tI  409 (426)
T 3c75_H          403 GEELRSV  409 (426)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEe
Confidence            9988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.91  E-value=0.00011  Score=41.39  Aligned_cols=76  Identities=12%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCC-------ccceEEEE-eCCCCeEEEEeC--CCC
Q psy13945          4 CIAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGH-------EGEILQLV-TADDGTLISSSL--DQT   63 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~v~~~~-~~~~~~~~~~~~--~~~   63 (86)
                      .+.++||++.++.+.          .++.|.++|..+.+....+.-.       ...-..+. +|++..++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            688999998777665          4678999999999887765421       11123455 899988877653  578


Q ss_pred             EEEEeCCCCeEEEeec
Q psy13945         64 ISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~   79 (86)
                      |.+.|..+++.+..+.
T Consensus       202 VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEE
Confidence            9999999988776653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.91  E-value=0.0001  Score=43.64  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=46.3

Q ss_pred             eeEEEECCCCCEEEEEeCC-----CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC-------------
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-----GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ-------------   62 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-------------   62 (86)
                      +..++|+|||++++.+..+     ..|++||+.+++.... ......+..+. +|+ ..++....+.             
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            4578999999988765543     4699999998876432 11112224566 788 7776655443             


Q ss_pred             -CEEEEeCCCCe
Q psy13945         63 -TISAWHTNDGS   73 (86)
Q Consensus        63 -~i~~~~~~~~~   73 (86)
                       .|.+|++.++.
T Consensus       243 ~~v~~~~lgt~~  254 (741)
T 1yr2_A          243 QTVWLHRLGTPQ  254 (741)
T ss_dssp             CEEEEEETTSCG
T ss_pred             CEEEEEECCCCc
Confidence             38888876553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.81  E-value=0.00045  Score=38.51  Aligned_cols=71  Identities=11%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             EECCCCCEEEEEeC-----CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe----------CCCCEEEEeC
Q psy13945          6 AVSSSGSWIAIGQA-----SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS----------LDQTISAWHT   69 (86)
Q Consensus         6 ~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------~~~~i~~~~~   69 (86)
                      ...|+++.++....     ++.+.++|..+++.+..+.....+ . +. +|++..++.+.          .+..|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34688888887765     578999999999988877644444 3 77 99998876554          3578999999


Q ss_pred             CCCeEEEee
Q psy13945         70 NDGSLKCNI   78 (86)
Q Consensus        70 ~~~~~~~~~   78 (86)
                      .+++.+..+
T Consensus       117 ~t~~v~~~I  125 (386)
T 3sjl_D          117 VTLLPTADI  125 (386)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCeEEEEE
Confidence            998877765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.80  E-value=0.00044  Score=41.01  Aligned_cols=61  Identities=11%  Similarity=-0.014  Sum_probs=43.2

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      +.+..||..+++..=....+...........+..++.++.|+.++.||.++|+.+..+...
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            7799999999987654443221111111335667778899999999999999999888643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.77  E-value=0.00073  Score=35.62  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             eEEEEC----CCCCEE-EEEeCCCeEEEEEcc-CCce-----EEEEeCCc-cceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          3 RCIAVS----SSGSWI-AIGQASGVLTLLDLR-TGTS-----LASWKGHE-GEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         3 ~~~~~~----~~~~~~-~~~~~~~~v~~~~~~-~~~~-----~~~~~~~~-~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ..++++    ++++.+ ++...++.|.+|+.. .++.     ...+..+. .....+. .+++..+++...++.|..|+.
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            467888    888654 444567899999976 3432     12222222 4456777 888988888878889999998


Q ss_pred             CCCeEEEee
Q psy13945         70 NDGSLKCNI   78 (86)
Q Consensus        70 ~~~~~~~~~   78 (86)
                      .+++.+..+
T Consensus       255 ~~g~~~~~~  263 (314)
T 1pjx_A          255 DGGQPKMRI  263 (314)
T ss_dssp             TCBSCSEEE
T ss_pred             CCCcEeEEE
Confidence            755544443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.73  E-value=0.001  Score=35.55  Aligned_cols=72  Identities=8%  Similarity=0.040  Sum_probs=49.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCE-EEEeCCCCeEEEeecCCC
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTI-SAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~   82 (86)
                      +.|+ |+ +++++..++...+| +.+++. ..+..+...+..+. ++  ..++++..+... .+|.+. ++ ...+..|.
T Consensus       269 ~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          269 KIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             EEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             cEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence            7899 88 88888999999999 775554 33344466777887 77  666666666544 677665 54 44465655


Q ss_pred             CC
Q psy13945         83 EP   84 (86)
Q Consensus        83 ~~   84 (86)
                      ..
T Consensus       341 ~~  342 (347)
T 2gop_A          341 DP  342 (347)
T ss_dssp             ST
T ss_pred             Hh
Confidence            43

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.67  E-value=0.0013  Score=35.03  Aligned_cols=71  Identities=8%  Similarity=-0.050  Sum_probs=48.3

Q ss_pred             eeEEEECCCCCEEEEEeCC----CeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeC------CCCEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQAS----GVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSL------DQTISAWH   68 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~------~~~i~~~~   68 (86)
                      +.+++++++++++++...+    +.|.+||...+.....+.  .....+..+. .+++..+++...      .+.|..++
T Consensus        89 ~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~  168 (333)
T 2dg1_A           89 PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS  168 (333)
T ss_dssp             EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred             cceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEe
Confidence            5789999999988877666    689999987666543332  2334677888 888888776653      24455555


Q ss_pred             CCCC
Q psy13945         69 TNDG   72 (86)
Q Consensus        69 ~~~~   72 (86)
                      ...+
T Consensus       169 ~~~~  172 (333)
T 2dg1_A          169 PDFR  172 (333)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            5443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.65  E-value=0.0017  Score=36.17  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=50.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC--CEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ--TISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~--~i~~~~~~~~~   73 (86)
                      ...++++++++++++...++.|+.||...+........... .. +. .+++..++.+..++  .|..++...+.
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            46789999999888887789999999887766544443222 23 66 88888777776654  67777766543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.64  E-value=0.00036  Score=41.20  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             eeEEEECCCCCEEEE-----EeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCC-------------
Q psy13945          2 IRCIAVSSSGSWIAI-----GQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLD-------------   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~-------------   61 (86)
                      +..++|||||++++-     |++...|+++|+.+++.... +..  .+...+. + ++..++....+             
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            567899999998773     33346799999998886432 211  1123455 7 77777665554             


Q ss_pred             CCEEEEeCCCC
Q psy13945         62 QTISAWHTNDG   72 (86)
Q Consensus        62 ~~i~~~~~~~~   72 (86)
                      ..|.+|++.++
T Consensus       208 ~~v~~~~lgt~  218 (693)
T 3iuj_A          208 HKVYFHRLGTA  218 (693)
T ss_dssp             CEEEEEETTSC
T ss_pred             cEEEEEECCCC
Confidence            34888887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.62  E-value=0.0008  Score=39.86  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=42.3

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.|..||..+++..-..... ....... ...+..++.++.++.+++||.++++.+..+.-
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            78999999998875444322 2222222 34556677788999999999999999988864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.59  E-value=0.0034  Score=37.42  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             eeEEEECCCCCEEEEEeCC-----CeEEEEEccCC--ceEEEEeCCccceEEEEeCCCCeEEEEeC----CCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-----GVLTLLDLRTG--TSLASWKGHEGEILQLVTADDGTLISSSL----DQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~i~~~~~~   70 (86)
                      +..+.|+|||++++....+     ..+++||+.++  +....+..+...+.....+++..++..+.    +..|.+|++.
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            4678999999987766644     38999998776  31344444433333333566776665543    3458899987


Q ss_pred             CC
Q psy13945         71 DG   72 (86)
Q Consensus        71 ~~   72 (86)
                      ++
T Consensus       350 ~~  351 (741)
T 1yr2_A          350 GS  351 (741)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.58  E-value=0.0019  Score=34.33  Aligned_cols=77  Identities=10%  Similarity=-0.027  Sum_probs=54.1

Q ss_pred             eeEEEECCCCCEEEEEeC--CCeEEEEEccCCceEEEEeCCcc-ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQA--SGVLTLLDLRTGTSLASWKGHEG-EILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      ...+.|++|++++++.+.  +..|.++|..+++....+.-... ..-.+. . .+..+++...++.+.++|..+.+.+..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            357899998776666553  57999999999998877653221 222333 3 234555666788999999999888877


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       102 i~  103 (266)
T 2iwa_A          102 FT  103 (266)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.51  E-value=0.0025  Score=33.86  Aligned_cols=76  Identities=8%  Similarity=0.018  Sum_probs=52.5

Q ss_pred             eEEEECCCCCEEEEEeCCC--eEEEEEccCCceEEEEeCCccceEEEE-eCCC-CeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          3 RCIAVSSSGSWIAIGQASG--VLTLLDLRTGTSLASWKGHEGEILQLV-TADD-GTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ..+.|+ ++.++.+.+.++  .|+++|..+++......-.. ..+..- .+.+ ..+.....++.+.++|..+.+.+.++
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            467787 677777777765  89999999999887765432 222221 2233 44445556788999999998888777


Q ss_pred             cC
Q psy13945         79 QG   80 (86)
Q Consensus        79 ~~   80 (86)
                      ..
T Consensus       124 ~~  125 (262)
T 3nol_A          124 NY  125 (262)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.44  E-value=0.0024  Score=34.56  Aligned_cols=77  Identities=12%  Similarity=0.119  Sum_probs=49.4

Q ss_pred             eeEEEECCCCCEEEEEeC--CCeEEEEEccCCceEEEEe-------CCccceEEEE-eCCCCeEEEEeC-----CCCEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQA--SGVLTLLDLRTGTSLASWK-------GHEGEILQLV-TADDGTLISSSL-----DQTISA   66 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~~~~~~~~~~~-----~~~i~~   66 (86)
                      ...++++++|+.+++...  ++..++|.+..++.. .+.       .+...+..+. .+++.+++.-..     +..|.+
T Consensus        19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~   97 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA   97 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence            568899999999888542  232344433344432 221       1234677888 788877665543     578999


Q ss_pred             EeCCCCeEEEeec
Q psy13945         67 WHTNDGSLKCNIQ   79 (86)
Q Consensus        67 ~~~~~~~~~~~~~   79 (86)
                      ||+.+++.+..+.
T Consensus        98 ~d~~tg~~~~~~~  110 (343)
T 2qe8_A           98 WDTLNNQLSRVIY  110 (343)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EECCCCeEEEEEE
Confidence            9999888666554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.42  E-value=0.003  Score=32.92  Aligned_cols=72  Identities=8%  Similarity=0.046  Sum_probs=51.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +.++++.+++++.++...++.+..+|. +++.... .......+..+. .+++..+++...++.+..++. +++..
T Consensus       101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A          101 PYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            467889999998888777889999987 5544322 222345577888 888888887777788999988 55443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.38  E-value=0.004  Score=33.49  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             eEEEECCCCCEEE-EEeCCCeEEEEEcc--CC-ce-----EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWIA-IGQASGVLTLLDLR--TG-TS-----LASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~-~~-----~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      ..++|++|++.++ +....+.|.+|+..  ++ +.     ...+.........+. .+++..+++...++.|..|+. ++
T Consensus       182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g  260 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  260 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC
Confidence            5789999998654 44556889999975  45 32     112222233455677 778887777767788999997 55


Q ss_pred             eEEEeec
Q psy13945         73 SLKCNIQ   79 (86)
Q Consensus        73 ~~~~~~~   79 (86)
                      +.+..+.
T Consensus       261 ~~~~~i~  267 (326)
T 2ghs_A          261 NHIARYE  267 (326)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            5555554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.34  E-value=0.0044  Score=32.92  Aligned_cols=67  Identities=7%  Similarity=-0.122  Sum_probs=49.3

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ..+..|+++++ ++++....+.+..|+. +++ ...+......+..+. .+++.++++...++.|..|+..
T Consensus        47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            35788999988 6677777889999986 444 334444455677888 8899877776667788888875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.32  E-value=0.0042  Score=32.37  Aligned_cols=69  Identities=13%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +.++++.+++.+.++...++.+..|+.. ++. ..+.  .....+..+. .+++..+++...++.+..|+. ++.
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            5678899999988887777889999865 332 2222  2344677888 788888888777888999987 443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.20  E-value=0.0068  Score=32.32  Aligned_cols=75  Identities=12%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEE--EEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      ..+.|+ ++.++.+.+.++.|+++|..+++.......  ...+.  +.......+.....++.+.++|..+.+.+.++..
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERL--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEEC--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECC--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            467776 467888888889999999999998776622  22222  3322345555666788999999999988887753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.12  E-value=0.00059  Score=37.44  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=43.0

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCC---CeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADD---GTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++|++..++.++.++.+..||..+++..-.+....  ..... ..+.   ..++.++.++.+..||.++++.+..+.
T Consensus       126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             -------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            44567778888888999999988887643332111  01111 2211   456678889999999999998877664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.10  E-value=0.011  Score=33.01  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=47.3

Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEEccCCceEEEEeCC---------------ccceEEEE-eCCCCeEEEEeCCCCE
Q psy13945          2 IRCIAVSSSGSWIAIGQ-ASGVLTLLDLRTGTSLASWKGH---------------EGEILQLV-TADDGTLISSSLDQTI   64 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------------~~~v~~~~-~~~~~~~~~~~~~~~i   64 (86)
                      ...++++++|+++++-. ..+.|+.|+..++... .+.++               -.....+. .+++.++++-..++.|
T Consensus       325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred             CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence            45789999999888877 7899999997766643 22222               12356677 7777777777777777


Q ss_pred             EEEeC
Q psy13945         65 SAWHT   69 (86)
Q Consensus        65 ~~~~~   69 (86)
                      +.+.+
T Consensus       404 r~i~~  408 (409)
T 3hrp_A          404 RKYAV  408 (409)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.08  E-value=0.009  Score=33.15  Aligned_cols=66  Identities=11%  Similarity=-0.125  Sum_probs=49.2

Q ss_pred             CEEEEEeCCC----eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe----------CCCCEEEEeCCCCeEEE
Q psy13945         12 SWIAIGQASG----VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS----------LDQTISAWHTNDGSLKC   76 (86)
Q Consensus        12 ~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~   76 (86)
                      +.+++...+.    .+.++|..+++.+.++.....+  .+. +|++..++.+.          .++.|.+||..+++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3444444444    8889999999998887654445  577 89988777665          36789999999998888


Q ss_pred             eec
Q psy13945         77 NIQ   79 (86)
Q Consensus        77 ~~~   79 (86)
                      .+.
T Consensus       111 ~I~  113 (368)
T 1mda_H          111 DIE  113 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.07  E-value=0.014  Score=33.54  Aligned_cols=75  Identities=15%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             EEEECCCCCEEEEEeCC------CeEEEEEccCCceEEEEeCCcc---ceEEEE-eCCCCeEEEEe--------------
Q psy13945          4 CIAVSSSGSWIAIGQAS------GVLTLLDLRTGTSLASWKGHEG---EILQLV-TADDGTLISSS--------------   59 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~---~v~~~~-~~~~~~~~~~~--------------   59 (86)
                      .+...|+| .+++...+      +.+.++|..+.+++.++.....   .-+.+- +|++..+++..              
T Consensus       142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~  220 (462)
T 2ece_A          142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE  220 (462)
T ss_dssp             EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred             ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence            45678999 66655544      6899999999999888863322   223355 78888888874              


Q ss_pred             -----CCCCEEEEeCCCCeEEEeec
Q psy13945         60 -----LDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        60 -----~~~~i~~~~~~~~~~~~~~~   79 (86)
                           ...+|.+||+.+++.++++.
T Consensus       221 ~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          221 HLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             THHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             hhhhccCCEEEEEECCCCcEeeEEe
Confidence                 36899999999887766654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.97  E-value=0.011  Score=30.76  Aligned_cols=71  Identities=13%  Similarity=0.189  Sum_probs=50.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-EEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA-SWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +.++++.+++++.++....+.|..+|.. ++... ........+..+. .+++..+++...++.+..++.. ++.
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            4678889999988877767889999876 55432 1122335677888 7888888877777888888876 443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.85  E-value=0.015  Score=30.55  Aligned_cols=78  Identities=10%  Similarity=-0.016  Sum_probs=52.3

Q ss_pred             eeEEEECCCCCEEEEEeCC--CeEEEEEccCCceEEEEeCCccc-eEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWIAIGQAS--GVLTLLDLRTGTSLASWKGHEGE-ILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ...+.|+. +.++.+.+..  ..|+.+|..+++......-.... --.+....+..+.....++.+.++|..+.+.+.++
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti  101 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF  101 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence            34677775 6777776665  48999999999998776543221 11222123444555667888999999998888777


Q ss_pred             cC
Q psy13945         79 QG   80 (86)
Q Consensus        79 ~~   80 (86)
                      ..
T Consensus       102 ~~  103 (243)
T 3mbr_X          102 RY  103 (243)
T ss_dssp             EC
T ss_pred             eC
Confidence            53

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.79  E-value=0.019  Score=30.60  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCc--c---ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHE--G---EILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         7 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~---~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +++|+..++.+..++.+.++|..+.+....+....  .   ....+. . ++..++....+..|.+-|..+++.+..+.
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            45567666666678899999998888776665321  1   234555 4 66666666678899999999998877664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.75  E-value=0.023  Score=33.24  Aligned_cols=60  Identities=20%  Similarity=0.165  Sum_probs=39.8

Q ss_pred             CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         20 SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        20 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .+.+..+|..+++..-...... .+.... ...+..++.++.++.+..+|.++++.+..+..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            4788888988887754443211 111111 22345566688999999999999999987763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.75  E-value=0.02  Score=30.34  Aligned_cols=69  Identities=9%  Similarity=0.027  Sum_probs=49.3

Q ss_pred             eEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSS-GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .+..|+++ +.++++....+.|..||..+++. ..+. ....+.++. .+++.++++.  +..|..||..+++..
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE
Confidence            46788885 45666777788999999877654 2232 345678888 8998866554  567889998877543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.68  E-value=0.039  Score=32.86  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=43.3

Q ss_pred             eeEEEECCCCCEEEEEeC----CCeEEEEEccCCc-eEEEEeCCccceEEEE-eCCCCeEEEEeCC---CCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQA----SGVLTLLDLRTGT-SLASWKGHEGEILQLV-TADDGTLISSSLD---QTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~i~~~~~~~~   72 (86)
                      ...+.++|||++++....    ...++++|+.++. ....+..+........ +..+.+++....+   ..|..+++.++
T Consensus       236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~  315 (693)
T 3iuj_A          236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP  315 (693)
T ss_dssp             EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            356889999998754332    2488999987653 3444444444444433 3344444454443   56888888765


Q ss_pred             e
Q psy13945         73 S   73 (86)
Q Consensus        73 ~   73 (86)
                      .
T Consensus       316 ~  316 (693)
T 3iuj_A          316 G  316 (693)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.67  E-value=0.027  Score=33.09  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             CCeEEEEEccCCceEEEEeCCccceEE-EEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         20 SGVLTLLDLRTGTSLASWKGHEGEILQ-LVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        20 ~~~v~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .+.|..||..+++..=...... .... ...-.+..++.++.|+.++.+|.++|+.+..++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            5778888988887653332211 1111 1111345666688999999999999999988764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.63  E-value=0.027  Score=30.32  Aligned_cols=69  Identities=19%  Similarity=0.088  Sum_probs=48.2

Q ss_pred             eEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .+..|++++ .++++....+.|..||..+++.. .+. ....+.++. .+++..++..  ...|.+||..+++..
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~  122 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEE
Confidence            467899874 56667777889999998776543 232 235678888 8888877654  334888998776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.59  E-value=0.016  Score=34.34  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=47.4

Q ss_pred             eEEEECCCCCEEEE-EeCCCeEEEEEccCCc------------eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          3 RCIAVSSSGSWIAI-GQASGVLTLLDLRTGT------------SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~------------~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      .++.++|||++++. +....++.++|..+.+            ....... ...-..+. ++++..+++.-.++++..|+
T Consensus       280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence            57899999997654 5567889999988553            2222222 22335666 78885556777899999999


Q ss_pred             CCC
Q psy13945         69 TND   71 (86)
Q Consensus        69 ~~~   71 (86)
                      +..
T Consensus       359 i~~  361 (595)
T 1fwx_A          359 IED  361 (595)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            865

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.57  E-value=0.025  Score=29.40  Aligned_cols=68  Identities=7%  Similarity=-0.003  Sum_probs=49.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE-EeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      +.++++.+++++.++....+.+..++. .++.... .......+..+. .+++..+++...++.|..++..
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            467888999988887777778999987 4443322 222345567888 8888877777777889999873

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.45  E-value=0.034  Score=29.50  Aligned_cols=69  Identities=19%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             eeEEEECCCCCEEEE----EeC-------------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCC--
Q psy13945          2 IRCIAVSSSGSWIAI----GQA-------------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLD--   61 (86)
Q Consensus         2 i~~~~~~~~~~~~~~----~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~--   61 (86)
                      +..+++.++|++.++    |..             .+.|..+|..+++.....  .......+. +|++..++.+...  
T Consensus       133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~  210 (305)
T 3dr2_A          133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQ  210 (305)
T ss_dssp             CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC-
T ss_pred             CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCc
Confidence            346889999998876    221             245667776556543322  233446677 8998876655544  


Q ss_pred             ----CCEEEEeCCCC
Q psy13945         62 ----QTISAWHTNDG   72 (86)
Q Consensus        62 ----~~i~~~~~~~~   72 (86)
                          +.|..|++..+
T Consensus       211 ~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          211 GHGSVEITAFAWRDG  225 (305)
T ss_dssp             --CCCEEEEEEEETT
T ss_pred             CCCCCEEEEEEecCC
Confidence                67888887654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.39  E-value=0.037  Score=29.15  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--cc---ceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EG---EILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         8 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+|+..++.+..+..|.++|..+.+...++...  ..   .+.-+...++..++....+..|.+-|.++++.+..+.
T Consensus       111 t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          111 TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            345666666667889999999888887666542  22   2233333366666666678899999999999887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.25  E-value=0.049  Score=29.15  Aligned_cols=71  Identities=10%  Similarity=-0.004  Sum_probs=49.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccc---eEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGE---ILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         9 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~---v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|+..++.++.+..+.++|..+.+...++...  ...   +..+...++..++....+..|.+-|..+++.+..+.
T Consensus       143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            46677777777889999998888887666532  222   233443367666666678899999999998887664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.18  E-value=0.058  Score=29.37  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=43.4

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCC-ccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGH-EGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +..++.+..++.+..+|..+++..-..... ........ ..+..++.+..++.+.++|..+++.+.....
T Consensus       277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV-LYNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE-EETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE-EECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            445666666778888888777765443311 11111111 1245677778889999999999988776643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.18  E-value=0.053  Score=28.89  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEEEeCC--ccc---eEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGH--EGE---ILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         8 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~---v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++|+..++.++....+.++|..+.+....+...  ..+   +..+...++..++....+..|.+.|..+++.+..+.
T Consensus       133 t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          133 THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence            346666666666788999998888877665542  222   233443366666666678899999999999887764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.14  E-value=0.06  Score=32.13  Aligned_cols=60  Identities=10%  Similarity=0.054  Sum_probs=41.5

Q ss_pred             CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         20 SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        20 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      ++.|..||..+++..=...... ...... ...+..++.++.++.++.||.++++.+..+..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            3789999999988754433221 111112 33466677788999999999999999887754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.92  E-value=0.13  Score=30.95  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             EEEECCCCCEEEEEeCCCe-------------------EEEEEccCCceEEEEeC--Cc-------cceEEEE-eCCCC-
Q psy13945          4 CIAVSSSGSWIAIGQASGV-------------------LTLLDLRTGTSLASWKG--HE-------GEILQLV-TADDG-   53 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~~~~~~--~~-------~~v~~~~-~~~~~-   53 (86)
                      .+++.+++.+++.+..++.                   |..+|..+++..=.+..  +.       ....... ..++. 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            4567788888888877653                   99999999988655543  21       1112222 23443 


Q ss_pred             --eEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         54 --TLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        54 --~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                        .++.+..++.+.++|.++|+.+...
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccc
Confidence              5778889999999999999887543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.52  E-value=0.18  Score=29.93  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=37.8

Q ss_pred             CCeEEEEEccCCceEEEEeCCccceE-EEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         20 SGVLTLLDLRTGTSLASWKGHEGEIL-QLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        20 ~~~v~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      .+.+..||..+++..=..... .+.. ....-.+..++.++.|+.++.+|.++|+.+..++-
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            367788888777764332211 1111 10111355566688999999999999999988753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.41  E-value=0.12  Score=27.32  Aligned_cols=69  Identities=23%  Similarity=0.266  Sum_probs=41.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +...+++. +..+..++.+..+|.. ++...........+.++. ..++..++..   +.+..+| .+++.+..+.
T Consensus       142 ~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          142 PIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC
T ss_pred             eEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc
Confidence            34445555 4446667888888877 666555444344444555 4566655444   7788888 6666555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.29  E-value=0.15  Score=27.73  Aligned_cols=70  Identities=17%  Similarity=0.186  Sum_probs=46.4

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCC---------ccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGH---------EGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +..++.++.++.+..+|..+++..-.....         ...+......++..++.++.++.+..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            456677777889999999888875433321         1222222222455666777889999999999988766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.20  E-value=0.25  Score=29.64  Aligned_cols=76  Identities=9%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             EEEECCCCCEEEEEeCCC-------------------eEEEEEccCCceEEEEeC--Cc-------cceEEEE-eCCC--
Q psy13945          4 CIAVSSSGSWIAIGQASG-------------------VLTLLDLRTGTSLASWKG--HE-------GEILQLV-TADD--   52 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~--~~-------~~v~~~~-~~~~--   52 (86)
                      .+++++++.+++.+..++                   .|..+|..+++..=.+..  +.       .....+. ..++  
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP  326 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence            356778888887776554                   488999999987655442  21       1112222 3355  


Q ss_pred             -CeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         53 -GTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        53 -~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                       ..++.+..++.+.++|.++|+.+..+.
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEECCCCEEEEEECCCCCEecccc
Confidence             567888899999999999999887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.06  E-value=0.29  Score=29.66  Aligned_cols=69  Identities=12%  Similarity=-0.022  Sum_probs=42.5

Q ss_pred             EEEECCCCCEEEEEeCC-----CeEEEEEccCCce--EEEEeC-CccceEEEE-eCCCCeEEEEe---CCCCEEEEeCCC
Q psy13945          4 CIAVSSSGSWIAIGQAS-----GVLTLLDLRTGTS--LASWKG-HEGEILQLV-TADDGTLISSS---LDQTISAWHTND   71 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~--~~~~~~-~~~~v~~~~-~~~~~~~~~~~---~~~~i~~~~~~~   71 (86)
                      .+.|+||++.|+....+     ..|+.+++.++..  ...+.. .......+. +|++..++...   ....+.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            56899999876655543     3577778766542  223322 223445667 89998776443   234577778765


Q ss_pred             C
Q psy13945         72 G   72 (86)
Q Consensus        72 ~   72 (86)
                      +
T Consensus       305 ~  305 (751)
T 2xe4_A          305 G  305 (751)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.97  E-value=0.23  Score=28.07  Aligned_cols=68  Identities=10%  Similarity=0.045  Sum_probs=46.0

Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEEeC-CccceEEEE-eCCCC-eEEEEeCCCCEEEEeCC
Q psy13945          3 RCIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASWKG-HEGEILQLV-TADDG-TLISSSLDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~   70 (86)
                      ..++++| ++.++++-...+.|..++...+........ ....-..+. +|++. ++++-...+.|..++..
T Consensus       229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            4577888 777777777778899999776554222221 223345777 89988 55666677888887754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.85  E-value=0.14  Score=32.00  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             ceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         43 EILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        43 ~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+.++. .++...+++-+.|+++++|++.++.++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            355666 6788889999999999999999999988753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.76  E-value=0.062  Score=32.44  Aligned_cols=68  Identities=12%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             eeEEEEC-CCCCEEEEEeC-C----CeEEEEEccCC-ceEE-EEeCCccceEEEE-eCCCCeEEEEeCC-----CCEEEE
Q psy13945          2 IRCIAVS-SSGSWIAIGQA-S----GVLTLLDLRTG-TSLA-SWKGHEGEILQLV-TADDGTLISSSLD-----QTISAW   67 (86)
Q Consensus         2 i~~~~~~-~~~~~~~~~~~-~----~~v~~~~~~~~-~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~-----~~i~~~   67 (86)
                      +....|| |||++++.+.. .    ..|+++|+.++ +.+. .+.   .....+. +|++..++-...+     ..|..+
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            4568899 99997774332 2    35999999887 5321 111   1122455 6787766544433     246666


Q ss_pred             eCCCC
Q psy13945         68 HTNDG   72 (86)
Q Consensus        68 ~~~~~   72 (86)
                      ++.++
T Consensus       253 ~lgt~  257 (751)
T 2xe4_A          253 VMGKL  257 (751)
T ss_dssp             ETTSC
T ss_pred             ECCCC
Confidence            76554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.62  E-value=0.23  Score=26.42  Aligned_cols=71  Identities=13%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCC--CEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQ--TISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~--~i~~~~~~~~~~   74 (86)
                      ...++++++++++++....+.|..+|... .....+. .......+. .+++.++++.....  .+..++..+++.
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            35789999999877776788999888654 3333222 234567777 78888766654433  365666666653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.55  E-value=0.19  Score=31.52  Aligned_cols=36  Identities=19%  Similarity=0.160  Sum_probs=29.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW   37 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   37 (86)
                      +.+++..++..++++-+.|+++++|++.+++++...
T Consensus       238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            455666778889999999999999999998876543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.45  E-value=0.36  Score=27.89  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce------------EEEEeC------CccceEEEE-eC---CCCeEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS------------LASWKG------HEGEILQLV-TA---DDGTLISSS   59 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~------~~~~v~~~~-~~---~~~~~~~~~   59 (86)
                      |..+..+|+|.+++..+ +..+.|..+..+..            ...+.-      ...+|..+. +|   .+..++.-.
T Consensus        68 i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            45788999999988775 56888888773210            112221      135688888 77   466899999


Q ss_pred             CCCCEEEEeCCC
Q psy13945         60 LDQTISAWHTND   71 (86)
Q Consensus        60 ~~~~i~~~~~~~   71 (86)
                      .|+.|++||+..
T Consensus       147 sD~~Ir~yDl~~  158 (452)
T 3pbp_A          147 EDDTITMFDILN  158 (452)
T ss_dssp             TTSCEEEEETTC
T ss_pred             cCCEEEEEEccc
Confidence            999999999975

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.10  E-value=0.29  Score=25.39  Aligned_cols=75  Identities=5%  Similarity=-0.071  Sum_probs=47.9

Q ss_pred             eEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          3 RCIAVSSSGSW-IAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         3 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ..+++++++.. +++....+.|.+++............. ..-..+. . ++..+++...++.|..++..+++.+..+.
T Consensus       170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            57888887654 455555678999987644332222222 2224455 4 45555666677899999998888777764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.01  E-value=0.53  Score=28.05  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=44.8

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEEccCCceE--EEEeC-CccceEEEE-eCCCCeEEEEeC-CCCEEE
Q psy13945          4 CIAVSS-SGSWIAIGQASG-----------VLTLLDLRTGTSL--ASWKG-HEGEILQLV-TADDGTLISSSL-DQTISA   66 (86)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~-----------~v~~~~~~~~~~~--~~~~~-~~~~v~~~~-~~~~~~~~~~~~-~~~i~~   66 (86)
                      ..++.+ ++++++.|+.+.           .+.+||..+.+..  ..+.. +........ ..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            445566 788888776432           5788887765532  22211 222223344 578888888874 458999


Q ss_pred             EeCCCCeEEE
Q psy13945         67 WHTNDGSLKC   76 (86)
Q Consensus        67 ~~~~~~~~~~   76 (86)
                      ||..+.....
T Consensus       270 yd~~t~~W~~  279 (656)
T 1k3i_A          270 YDSSSDSWIP  279 (656)
T ss_dssp             EEGGGTEEEE
T ss_pred             ecCcCCceeE
Confidence            9987765443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.82  E-value=0.13  Score=30.72  Aligned_cols=71  Identities=10%  Similarity=-0.034  Sum_probs=47.8

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccC----------CceEEEEeCCccce--E---EEE-eCCCCeEEEEeC---CCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRT----------GTSLASWKGHEGEI--L---QLV-TADDGTLISSSL---DQT   63 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~v--~---~~~-~~~~~~~~~~~~---~~~   63 (86)
                      ..++|+++|...++...+..+.+||+..          .+.+.++..+.++-  .   .+. .+++.++++...   |+.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            5789999996666778899999999876          45566666554322  1   123 578999887653   333


Q ss_pred             E----------EEEeCCCCe
Q psy13945         64 I----------SAWHTNDGS   73 (86)
Q Consensus        64 i----------~~~~~~~~~   73 (86)
                      +          .++|+..++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSS
T ss_pred             ccCCCCCCCcceEEEcCCCc
Confidence            1          678886554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=93.76  E-value=0.35  Score=25.10  Aligned_cols=69  Identities=9%  Similarity=-0.030  Sum_probs=43.2

Q ss_pred             eEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCC
Q psy13945          3 RCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~   71 (86)
                      .++++++++. ++++....+.|..++...................+. .++ +..+++-...+.|.+++...
T Consensus        39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            5788888654 455555567899999765443322222223456777 775 44555666677888888753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.68  E-value=0.64  Score=27.92  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             EEECCCCCEEEEEeCCC-------------------eEEEEEccCCceEEEEeC--Cc-------cceEEEE-eCCCC--
Q psy13945          5 IAVSSSGSWIAIGQASG-------------------VLTLLDLRTGTSLASWKG--HE-------GEILQLV-TADDG--   53 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~--~~-------~~v~~~~-~~~~~--   53 (86)
                      +++.+++.+++.+..++                   .|..+|..+++..=.+..  +.       .+..... ..++.  
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~  314 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR  314 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence            56777777877776665                   388999999987655442  21       1222222 23443  


Q ss_pred             -eEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945         54 -TLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus        54 -~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                       .++.+..++.+.++|..+|+.+...
T Consensus       315 ~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          315 KVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCCEeccc
Confidence             5778889999999999999887543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.59  E-value=0.62  Score=27.47  Aligned_cols=69  Identities=22%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCcc-ceEEEE-eC--CCCeEEEEeC------CCCEEEEeCCCCeEEEeec
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEG-EILQLV-TA--DDGTLISSSL------DQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~v~~~~-~~--~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..++.+..++.+..+|..+++..=....... .-..+. .|  .+..++.+..      ++.+..+|.++|+.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            45677778899999999999987644332110 000111 22  2334444433      7899999999999887765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.32  E-value=0.16  Score=32.28  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             EEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         45 LQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        45 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .++. .++...+++-+.|+++++|++.++.++.+..
T Consensus       241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            3444 5677788899999999999999999988753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.11  E-value=0.8  Score=27.32  Aligned_cols=73  Identities=8%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEEccCCceEEEEeCCccce-EEEE-eCCCCeEEEEe-CC-----CCEEEEeCCCCeE
Q psy13945          4 CIAVSSSGSWIAIGQA-SGVLTLLDLRTGTSLASWKGHEGEI-LQLV-TADDGTLISSS-LD-----QTISAWHTNDGSL   74 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~~~~~-~~-----~~i~~~~~~~~~~   74 (86)
                      +.++..++++++.|+. +..+.+||..+.+-...-.-...+. .+.. .+++.+++.|+ .+     ..+.+||..+...
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            3566788999888874 4579999987654322211111111 2233 45888888887 34     5689999987765


Q ss_pred             EE
Q psy13945         75 KC   76 (86)
Q Consensus        75 ~~   76 (86)
                      ..
T Consensus       327 ~~  328 (656)
T 1k3i_A          327 TS  328 (656)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=92.95  E-value=0.77  Score=26.70  Aligned_cols=70  Identities=10%  Similarity=0.028  Sum_probs=45.8

Q ss_pred             CCCCEE-EEEeCCCeEEEEEccCC----ceEEEEe------C-CccceEEEE-eCCCCeEEEEeCC------CCEEEEeC
Q psy13945          9 SSGSWI-AIGQASGVLTLLDLRTG----TSLASWK------G-HEGEILQLV-TADDGTLISSSLD------QTISAWHT   69 (86)
Q Consensus         9 ~~~~~~-~~~~~~~~v~~~~~~~~----~~~~~~~------~-~~~~v~~~~-~~~~~~~~~~~~~------~~i~~~~~   69 (86)
                      .+++++ +.+-.+..|.++|..+.    +......      . ....-..+. .|++ ++++...+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            667654 45666788999998643    3344442      0 111223445 6888 77766555      68999999


Q ss_pred             CCCeEEEeec
Q psy13945         70 NDGSLKCNIQ   79 (86)
Q Consensus        70 ~~~~~~~~~~   79 (86)
                      .+.+.+..+.
T Consensus       172 ~T~~v~~~~~  181 (462)
T 2ece_A          172 YSFEPLGKWE  181 (462)
T ss_dssp             TTCCEEEECC
T ss_pred             CCCeEEEEEc
Confidence            9988888775

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.84  E-value=0.21  Score=31.82  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=26.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEE
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS   36 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   36 (86)
                      ++..++..++++-+.|+++++|++.++.++.+
T Consensus       243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            34456778899999999999999998877554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.53  E-value=0.82  Score=25.98  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=44.0

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEccCCceEEEE-eC-CccceEEEE-eCCCC-eEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSS-SGSWIAIGQASGVLTLLDLRTGTSLASW-KG-HEGEILQLV-TADDG-TLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~   70 (86)
                      .+++++ ++.+.++-...+.|+.++..++.....+ .. ....-..+. +|++. ++++-...+.|..+++.
T Consensus       232 giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          232 TCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            467788 6777777667788988887766652222 21 122234577 88887 55666677889887754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.26  E-value=1  Score=26.41  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEEcc-------CCce-----------EEE-Ee-CCccceEEEE-eCCCC-eEEEEe
Q psy13945          3 RCIAVSS-SGSWIAIGQASGVLTLLDLR-------TGTS-----------LAS-WK-GHEGEILQLV-TADDG-TLISSS   59 (86)
Q Consensus         3 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~-------~~~~-----------~~~-~~-~~~~~v~~~~-~~~~~-~~~~~~   59 (86)
                      ..++++| ++.++++-...+.|..+|..       ++..           ... +. .....-+.++ +|++. ++++-.
T Consensus       250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~  329 (496)
T 3kya_A          250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI  329 (496)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence            3567888 56777777788889999987       4443           112 22 2223446788 89988 456667


Q ss_pred             CCCCEEEEeC
Q psy13945         60 LDQTISAWHT   69 (86)
Q Consensus        60 ~~~~i~~~~~   69 (86)
                      ..+.|+.++.
T Consensus       330 ~~h~I~kid~  339 (496)
T 3kya_A          330 NNHYFMRSDY  339 (496)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEec
Confidence            7788888554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.89  E-value=0.77  Score=24.27  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=41.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        11 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +..+..+..++.+..+|.. ++..-........+.++. .+++. +..+..++.+..+|.. ++.+..+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~  173 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK  173 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence            3445667778888888877 665544444334444444 44555 4456677889999987 76665543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.93  E-value=1.5  Score=27.10  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=26.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW   37 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   37 (86)
                      |.++.+  +..++++-+.|+++++|++.+++.+...
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence            344444  4678999999999999999998876544

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=89.71  E-value=0.91  Score=27.98  Aligned_cols=30  Identities=13%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             CCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         50 ADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        50 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      .+...+++-+.|+++++|++.++.++.+..
T Consensus       229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             ETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            346788999999999999999999887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=89.69  E-value=1.4  Score=23.42  Aligned_cols=69  Identities=12%  Similarity=0.117  Sum_probs=45.5

Q ss_pred             eeEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEEEeCC-ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGS-WIAIGQASGVLTLLDLRTGTSLASWKGH-EGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +..++++|++. ++++...++.|...|.. ++.+..+.-. ..-.-.+. .+++.++++.-.++.+.++++..
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            57899998754 56668888899999987 7777665321 12233455 56666656655667777776643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.29  E-value=1.8  Score=22.92  Aligned_cols=63  Identities=8%  Similarity=0.015  Sum_probs=37.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce------EEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS------LASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      +..++|+|+|.+.+.  .++.++-.+..+...      ...+-  +-+. ..++. .+++.+.++  .|+.|.-++.
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            457999999997666  677777666543111      11111  1111 24555 688888777  5588876664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.14  E-value=2.7  Score=24.77  Aligned_cols=67  Identities=15%  Similarity=0.161  Sum_probs=49.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ++..++.-..++.-...|.+.++|+.++..+..-+.....|..-. ..+...++....+|.+.--.+.
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            344555566777778899999999999999887777777776665 6666777777777776554443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=87.74  E-value=2  Score=22.93  Aligned_cols=68  Identities=9%  Similarity=0.065  Sum_probs=42.2

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC--------------------CccceEEEE-eC-CCCeEEEEeC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG--------------------HEGEILQLV-TA-DDGTLISSSL   60 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~v~~~~-~~-~~~~~~~~~~   60 (86)
                      .++++.++++++.++..++.|..|+...++.. .+..                    .......+. .+ ++.++++ ..
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~   99 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DC   99 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ET
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-EC
Confidence            45788888887777888889999987654432 2210                    012456777 76 5555544 33


Q ss_pred             CCCEEEEeCCCC
Q psy13945         61 DQTISAWHTNDG   72 (86)
Q Consensus        61 ~~~i~~~~~~~~   72 (86)
                      .+.+..++..++
T Consensus       100 ~~~i~~~d~~~g  111 (322)
T 2fp8_A          100 YYHLSVVGSEGG  111 (322)
T ss_dssp             TTEEEEECTTCE
T ss_pred             CCCEEEEeCCCC
Confidence            344777776644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.63  E-value=1.7  Score=25.27  Aligned_cols=30  Identities=17%  Similarity=0.296  Sum_probs=25.0

Q ss_pred             CeeEEEECCCC---CEEEEEeCCCeEEEEEccC
Q psy13945          1 LIRCIAVSSSG---SWIAIGQASGVLTLLDLRT   30 (86)
Q Consensus         1 ~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~   30 (86)
                      +|..+.|+|-+   ..+++-..|.+|++||+..
T Consensus       126 ~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          126 SIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            47889999954   5788888899999999874

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=85.34  E-value=3.4  Score=23.08  Aligned_cols=69  Identities=9%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             eeEEEECCCCCEEEEEeCC-CeEEEEEccCCceEEEEe-CC-----ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQAS-GVLTLLDLRTGTSLASWK-GH-----EGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-~~-----~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      ...++..++|+..++++.. +.|..++.. ++....+. ..     ......+. .|++..++.....+.+..+|+..
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3578889999998888877 777776644 33333221 11     11245778 89998887776699999999764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=85.14  E-value=3  Score=22.30  Aligned_cols=69  Identities=16%  Similarity=0.115  Sum_probs=42.0

Q ss_pred             eeEEEECC-CCCEEEEEeC-----------------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCC
Q psy13945          2 IRCIAVSS-SGSWIAIGQA-----------------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLD   61 (86)
Q Consensus         2 i~~~~~~~-~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~   61 (86)
                      ...+++.+ +|++.++...                 .+.+..+|..+++....... ......+. ++++..+ ++-...
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGG
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCC
Confidence            35678888 8887666432                 25677788665554322111 12224566 7887744 555667


Q ss_pred             CCEEEEeCCC
Q psy13945         62 QTISAWHTND   71 (86)
Q Consensus        62 ~~i~~~~~~~   71 (86)
                      +.|..+++..
T Consensus       207 ~~I~~~~~~~  216 (322)
T 2fp8_A          207 HQIVKYWLEG  216 (322)
T ss_dssp             TEEEEEESSS
T ss_pred             CeEEEEECCC
Confidence            8888888763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=84.24  E-value=3.5  Score=22.39  Aligned_cols=72  Identities=13%  Similarity=0.001  Sum_probs=41.0

Q ss_pred             eEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSW-IAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      ..+++++++.. .++-...+.|..+|................-..+. . .+..+.+-...+.|..++..+++..
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence            57888875554 44555567788888753222222222223334555 4 3455566666778888887666533

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=82.60  E-value=4.9  Score=22.85  Aligned_cols=71  Identities=7%  Similarity=-0.034  Sum_probs=40.0

Q ss_pred             eeEEEECCCCCEEEEEeC-C----CeEEEEEccCCceE--EEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQA-S----GVLTLLDLRTGTSL--ASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~--~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      ...++++++++.++.+.. .    ..+.+.+.. +...  ..+.. ......+. .| ++.++++-..++.|..++...+
T Consensus       181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~  258 (430)
T 3tc9_A          181 VRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ  258 (430)
T ss_dssp             EEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred             cceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            357899999985554443 1    133444432 2221  22221 12234556 77 6777777777788888888765


Q ss_pred             eE
Q psy13945         73 SL   74 (86)
Q Consensus        73 ~~   74 (86)
                      ..
T Consensus       259 ~~  260 (430)
T 3tc9_A          259 ET  260 (430)
T ss_dssp             EE
T ss_pred             cE
Confidence            43

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=82.28  E-value=6.5  Score=24.04  Aligned_cols=76  Identities=11%  Similarity=0.084  Sum_probs=43.7

Q ss_pred             eEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEEEeC--CccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEee
Q psy13945          3 RCIAVSSSG-SWIAIGQASGVLTLLDLRTGTSLASWKG--HEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         3 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ..+++++++ +++++-.....|..++............  ....-..+. .. ..++++....+.|..++..+++.+..+
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            468888764 5555555667888888753222221111  111122333 33 355566667788999988777766665


Q ss_pred             c
Q psy13945         79 Q   79 (86)
Q Consensus        79 ~   79 (86)
                      .
T Consensus       622 ~  622 (699)
T 1n7d_A          622 A  622 (699)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.12  E-value=1  Score=25.04  Aligned_cols=62  Identities=8%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             eCCCeEEEEEccCCceEEEEeCC----ccceEEEEe--C-------CCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         18 QASGVLTLLDLRTGTSLASWKGH----EGEILQLVT--A-------DDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        18 ~~~~~v~~~~~~~~~~~~~~~~~----~~~v~~~~~--~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ..+|.+..++..++...-.+...    ..++..-..  -       .+..++.++.++.+...|.++|+.+..+.
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            57899999988777543322211    111221000  1       45567789999999999999999988875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=80.91  E-value=5.9  Score=22.61  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             eeEEEECCCCCEEEEEeCC---Ce-EEEEEccCCce-EEEEeCCccceEEEE-eC-CCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQAS---GV-LTLLDLRTGTS-LASWKGHEGEILQLV-TA-DDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~---~~-v~~~~~~~~~~-~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      ...++++++++++++....   .. +...+...... ...+. ....-..+. .+ ++.++++-..++.|..++..++..
T Consensus       184 P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          184 CADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             EEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred             ccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence            4678899999855544311   11 22222221111 01111 111123344 55 566666666667777777765543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=80.24  E-value=7.5  Score=23.41  Aligned_cols=73  Identities=16%  Similarity=0.152  Sum_probs=47.6

Q ss_pred             EECCCCCEEEEEeCC----------------CeEEEEEccCCceEEEEeCCc----------cceEEEE-e-CCC---Ce
Q psy13945          6 AVSSSGSWIAIGQAS----------------GVLTLLDLRTGTSLASWKGHE----------GEILQLV-T-ADD---GT   54 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~~~~~~----------~~v~~~~-~-~~~---~~   54 (86)
                      ++.++..+++.+..+                ..+..+|..+++..=.++...          .++. +. . .++   ..
T Consensus       247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~  325 (599)
T 1w6s_A          247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKL  325 (599)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEE
T ss_pred             eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEE
Confidence            344555666665544                378899999998764444321          1121 22 2 456   45


Q ss_pred             EEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         55 LISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        55 ~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++.+..++.+.++|.++|+.+....
T Consensus       326 v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          326 LTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCcEEEEEECCCCCEeeccc
Confidence            6678899999999999999887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=80.11  E-value=7.3  Score=23.24  Aligned_cols=58  Identities=10%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             CeEEEEEccCCceEEEEeC--Cc--------cceEEEE-e-CCCC---eEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         21 GVLTLLDLRTGTSLASWKG--HE--------GEILQLV-T-ADDG---TLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~--~~--------~~v~~~~-~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.|..+|..+++..=.++.  +.        .++. +. . .++.   .++.++.++.+.++|.++|+.+..+.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            5789999999987644432  21        1222 12 2 4563   56788899999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 8e-10
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSL 60
           I  ++ S SG  +  G       + D           GH+  +  L   DDG  + + S 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 61  DQTISAWH 68
           D  +  W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.1 bits (79), Expect = 4e-04
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 3/87 (3%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTL--LDLRTGTSLASWKGHEGEILQLVTADDG-TLISS 58
           I  I    +G+  A G       L  L         S       I  +  +  G  L++ 
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 59  SLDQTISAWHTNDGSLKCNIQGPTEPV 85
             D   + W          + G    V
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRV 315

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.0 bits (71), Expect = 0.004
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSL 60
           +  ++++        G       L D+R G    ++ GHE +I  +    +G    + S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 61  DQTISAWH 68
           D T   + 
Sbjct: 247 DATCRLFD 254

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 3e-08
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
           +R +   S G +I        L + D +    + +   HE  +  L        +++ S+
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 61  DQTISAW 67
           DQT+  W
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 4   CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSLDQ 62
                  G ++  G     + + D+ TG  L +  GH+  +  ++    G  ++S + D+
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269

Query: 63  TISAWHTNDGSLKCNIQGPTEPV 85
           T+  W   +      +      V
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFV 292

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 30 TGTSLASWKGHEGEILQLVTADDGT-LISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
                +  GH   + +++     + ++S+S D TI  W    G  +  ++G T+ V 
Sbjct: 6  RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 15/46 (32%)

Query: 2  IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL 47
          +  +      S +        + + D  TG    + KGH   +  +
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 7e-08
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTA-------DDGT 54
           +  +A + +  +I  G     +   D ++G  L   +GH   ++ +  A       +   
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 55  LISSSLDQTISAW 67
             + S D     W
Sbjct: 371 FATGSGDCKARIW 383

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 2  IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS--LASWKGHEGEILQLVTADDGT-LISS 58
          I C A +   + IAI   +  + + +        +   K H G++  +  A D   +++ 
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 59 SLDQTISAWHTNDGSLKCN 77
            D+    W     + K  
Sbjct: 70 GTDRNAYVWTLKGRTWKPT 88

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 31/81 (38%)

Query: 6  AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTIS 65
           +    +++  G    ++ + D      L    GH+G +  L  A  G L+S S D+T+ 
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

Query: 66 AWHTNDGSLKCNIQGPTEPVH 86
           W    G      +G    V 
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVR 98

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 1e-05
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 35 ASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
           + +GH   ++  +  +D  +I+ + D+ I  + + +      + G    V 
Sbjct: 6  TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW 57

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (78), Expect = 5e-04
 Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLVTADDGTLISSSL 60
           +  I        I +  +     + +LR+G  + +       +I  +       + +   
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343

Query: 61  DQTISAW 67
           D      
Sbjct: 344 DGQSFLE 350

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-06
 Identities = 13/60 (21%), Positives = 21/60 (35%)

Query: 27 DLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
                S    KGH+  ++  +      ++S S D T+  W    G     + G T  V 
Sbjct: 2  RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 5e-06
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 4   CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQ 62
            +  +  G W        +L       G S+         +L   ++ DD  +++ S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328

Query: 63  TISAW 67
             + +
Sbjct: 329 KATVY 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 1e-05
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 3   RCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLVTADDGTLISSSLD 61
                      +A G     + +  ++     + +   H+  +  L+     TL+SS  D
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 62  QTISAWH 68
             I  W+
Sbjct: 279 ACIKRWN 285

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 11  GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTA----DDGTLISSSLDQTISA 66
               A   A   + + D+ T   +  W   + ++           +G +IS SLD T++ 
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 67  W 67
           +
Sbjct: 323 Y 323

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 8e-05
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 2  IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLVTADDGTLISSSL 60
          I  ++ S+ G  +    A G +   D+ TG S   +   H   I  + T   G L + S 
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74

Query: 61 DQTISAWHTNDGSLKCNIQ 79
          D  +         +  +  
Sbjct: 75 DDHLKVVPAGGSGVDSSKA 93

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.0 bits (81), Expect = 2e-04
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 4   CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL--VTADDGTLISSSLD 61
            +  S  G+ IA   A   + + ++ T     +         Q   +      L+S S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 62  QTISAWH 68
             I+  +
Sbjct: 303 GFINFVN 309

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.5 bits (80), Expect = 3e-04
 Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 5  IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLVTADDGT--LISSSLD 61
           A+ +   ++ +      L ++D+ + T   S     +      + A D     + ++  
Sbjct: 2  PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 62 QTISAWHTNDGSLKCNIQGPTEPVH 86
            I     +      +    + P  
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGE 86

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 32.8 bits (73), Expect = 0.003
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 2   IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEI 44
             C+A    G  + +G     L + +  T   + + K   G++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.82
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.76
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.75
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.74
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.73
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.71
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.71
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.71
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.71
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.68
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.68
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.67
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.62
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.6
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.59
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.52
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.5
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.4
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.37
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.36
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.34
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.31
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.14
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.13
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.12
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.11
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.1
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.98
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.95
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.85
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.32
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.22
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.84
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.79
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.36
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.91
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	90.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.08
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	84.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	84.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	83.79
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.08

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.9e-22  Score=106.33  Aligned_cols=85  Identities=22%  Similarity=0.361  Sum_probs=76.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCC---eEEEEEccCCceEEEEe-------------CCccceEEEE-eCCCCeEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASG---VLTLLDLRTGTSLASWK-------------GHEGEILQLV-TADDGTLISSSLDQT   63 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~-------------~~~~~v~~~~-~~~~~~~~~~~~~~~   63 (86)
                      +|.+++|+||++++++++.|+   .+++||+.+++....+.             +|...|.+++ +|++.++++++.|++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            478999999999999999886   48999999887766553             6888999999 999999999999999


Q ss_pred             EEEEeCCCCeEEEeecCCCCCC
Q psy13945         64 ISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        64 i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      |++||+++++++.++.+|.+.|
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGC
T ss_pred             EEEEECCCCCEEEEECCcCCcc
Confidence            9999999999999999998765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=5.1e-19  Score=94.26  Aligned_cols=85  Identities=15%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE--E
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGT--SLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL--K   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~--~   75 (86)
                      ||+|++|+||++++++++.++.|++||...++  ....+.+|...|.++. +|++..+++++.|+.+++||+.++..  .
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            68999999999999999999999999987665  4567889999999999 99999999999999999999987653  3


Q ss_pred             EeecCCCCCC
Q psy13945         76 CNIQGPTEPV   85 (86)
Q Consensus        76 ~~~~~~~~~v   85 (86)
                      ..+.+|...|
T Consensus        89 ~~~~~~~~~v   98 (371)
T d1k8kc_          89 LVILRINRAA   98 (371)
T ss_dssp             EECCCCSSCE
T ss_pred             cccccccccc
Confidence            4455565543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.5e-17  Score=88.29  Aligned_cols=84  Identities=18%  Similarity=0.375  Sum_probs=72.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe------------------CCccceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK------------------GHEGEILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~v~~~~-~~~~~~~~~~~~~   61 (86)
                      +|++++|+|||++|++|+ |+.|++||+.+++....+.                  .+...|.+++ +|++..+++++.|
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence            478999999999999987 8899999998877665543                  3445688999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         62 QTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      +.+++|+...++....+.+|...|
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v  166 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDI  166 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cccccccccccccccccccccccc
Confidence            999999999999999998887665

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2.7e-17  Score=85.61  Aligned_cols=85  Identities=19%  Similarity=0.256  Sum_probs=75.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+|+++++++++.++.+++|+.........+.  .+...+.++. ++++..+++++.|+.|++||+.+++++..
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE
Confidence            47899999999999999999999999998887766554  3556788999 99999999999999999999999999999


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      +.+|.+.|
T Consensus       308 ~~~H~~~V  315 (340)
T d1tbga_         308 LAGHDNRV  315 (340)
T ss_dssp             ECCCSSCE
T ss_pred             EcCCCCCE
Confidence            99998776

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.3e-17  Score=86.85  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +|.+++|+|+++++++|+.++.|++||..+++.+..+.+|...|.++. +|++..+++++.|+.|++||
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            378899999999999999999999999999999999999999999999 99999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=6.2e-17  Score=84.78  Aligned_cols=82  Identities=23%  Similarity=0.397  Sum_probs=72.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-------CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-------GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +|.++.|+|+++++++++.++.+++||..++.....+.       +|...|.++. +|++..+++++.|+.|++||++++
T Consensus       191 ~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            47899999999999999999999999998877655443       4677899999 999999999999999999999999


Q ss_pred             eEEEeecCCC
Q psy13945         73 SLKCNIQGPT   82 (86)
Q Consensus        73 ~~~~~~~~~~   82 (86)
                      ++++.+..|.
T Consensus       271 ~~~~~l~~~~  280 (311)
T d1nr0a1         271 KVEKTIPVGT  280 (311)
T ss_dssp             EEEEEEECCS
T ss_pred             cEEEEEECCC
Confidence            9999887664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.1e-17  Score=86.02  Aligned_cols=68  Identities=21%  Similarity=0.370  Sum_probs=64.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +|.+++++|+++++++++.|+.|++||+.+++.+..+.+|...|.+++ +|++..+++++.|+.|++||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            478899999999999999999999999999999999999999999999 99999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.5e-17  Score=85.54  Aligned_cols=85  Identities=20%  Similarity=0.386  Sum_probs=72.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce------------EEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS------------LASWKGHEGEILQLV-TADDGTLISSSLDQTISAW   67 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~   67 (86)
                      +|.+++|+|+++++++++.++.+++||+..+..            ......|...|.++. +|++..+++++.|+.|++|
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vw  335 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  335 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            478999999999999999999999999865432            334456778899999 9999999999999999999


Q ss_pred             eCCCCeEEEeecCCCCCC
Q psy13945         68 HTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        68 ~~~~~~~~~~~~~~~~~v   85 (86)
                      |+++++++..+.+|.+.|
T Consensus       336 d~~~~~~~~~l~~H~~~V  353 (388)
T d1erja_         336 DKKSGNPLLMLQGHRNSV  353 (388)
T ss_dssp             ETTTCCEEEEEECCSSCE
T ss_pred             ECCCCcEEEEEeCCCCCE
Confidence            999999999999998765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.73  E-value=7.7e-17  Score=84.44  Aligned_cols=85  Identities=14%  Similarity=0.241  Sum_probs=73.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE--EEEeCCccceEEEE-eCCCCeEEEEeC--CCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL--ASWKGHEGEILQLV-TADDGTLISSSL--DQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~v~~~~-~~~~~~~~~~~~--~~~i~~~~~~~~~~~   75 (86)
                      +|++++|+|+|+++++|+.|++|++||+...+..  ..+..|...|.++. ++++..+++++.  +..+++|++.+++..
T Consensus        60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~  139 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN  139 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred             CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccc
Confidence            4889999999999999999999999999876543  45678899999999 999999988875  466999999998888


Q ss_pred             EeecCCCCCC
Q psy13945         76 CNIQGPTEPV   85 (86)
Q Consensus        76 ~~~~~~~~~v   85 (86)
                      ..+.+|.+.|
T Consensus       140 ~~l~~h~~~v  149 (311)
T d1nr0a1         140 GNLTGQARAM  149 (311)
T ss_dssp             BCCCCCSSCE
T ss_pred             cccccccccc
Confidence            8888887765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=8.2e-17  Score=84.55  Aligned_cols=83  Identities=14%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEE----EEeCCCCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSS-GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQ----LVTADDGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      +|.+++|+|+ +.++++++.|+.|++||..+++....+.+|...+..    +..+++..+++++.|+.|++||+++++++
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            4789999996 588999999999999999999998888887766543    33478899999999999999999999999


Q ss_pred             EeecCCCC
Q psy13945         76 CNIQGPTE   83 (86)
Q Consensus        76 ~~~~~~~~   83 (86)
                      ..+..|..
T Consensus       287 ~~~~~~~~  294 (325)
T d1pgua1         287 QKWTLDKQ  294 (325)
T ss_dssp             EEEECCTT
T ss_pred             EEEEecCC
Confidence            88876654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-16  Score=78.89  Aligned_cols=76  Identities=24%  Similarity=0.412  Sum_probs=65.6

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      |+|+  ++|++++++|+.|++|++||+.+++....+.+|...|.++. +++..+++++.|+.+++|++..+........
T Consensus        18 V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~-~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~   93 (293)
T d1p22a2          18 VYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDSTVRVWDVNTGEMLNTLIH   93 (293)
T ss_dssp             EEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE-CCSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred             EEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee-cccceeecccccccccccccccccccccccc
Confidence            5565  45899999999999999999999999999999999998885 5678999999999999999988876665543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.5e-16  Score=82.84  Aligned_cols=84  Identities=15%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCce---E--EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC--C
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS---L--ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND--G   72 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~--~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~--~   72 (86)
                      +|.+++|+|+++++++|+ ++.|++||+.....   .  ....+|...|.+++ +|++..+++++.|+.|++||+..  .
T Consensus        53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~  131 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc
Confidence            478999999999999987 78999999875432   2  23346788999999 99999999999999999999874  3


Q ss_pred             eEEEeecCCCCCC
Q psy13945         73 SLKCNIQGPTEPV   85 (86)
Q Consensus        73 ~~~~~~~~~~~~v   85 (86)
                      +....+..|...+
T Consensus       132 ~~~~~~~~~~~~v  144 (337)
T d1gxra_         132 RIKAELTSSAPAC  144 (337)
T ss_dssp             EEEEEEECSSSCE
T ss_pred             ccccccccccccc
Confidence            5556666665543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.7e-16  Score=80.78  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=76.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +|++++|+|+++++++++.|++|++||+.+++....+.+|...|.++. ++++..++++..+..+..|+.........+.
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence            589999999999999999999999999999999999999999999999 9999999999999999999988877777666


Q ss_pred             CCCCC
Q psy13945         80 GPTEP   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      +|...
T Consensus        99 ~~~~~  103 (317)
T d1vyhc1          99 GHDHN  103 (317)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            66543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.6e-16  Score=84.26  Aligned_cols=77  Identities=18%  Similarity=0.266  Sum_probs=65.8

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEE------eCCccceEEEE-eCCCCeEEEEeCCCC---EEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW------KGHEGEILQLV-TADDGTLISSSLDQT---ISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~v~~~~-~~~~~~~~~~~~~~~---i~~~~~~~   71 (86)
                      +.+++|+|++ ++++|+.|++|++||+.+++....+      .+|...|.+++ +|++..+++++.|+.   +++||+++
T Consensus       187 ~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc
Confidence            5689999987 7899999999999999988765543      45788999999 999999999998875   89999999


Q ss_pred             CeEEEeec
Q psy13945         72 GSLKCNIQ   79 (86)
Q Consensus        72 ~~~~~~~~   79 (86)
                      +.++..+.
T Consensus       266 g~~~~~l~  273 (393)
T d1sq9a_         266 GERIGSLS  273 (393)
T ss_dssp             CCEEEEEC
T ss_pred             ceeeeeec
Confidence            88887764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.5e-16  Score=80.45  Aligned_cols=85  Identities=20%  Similarity=0.320  Sum_probs=71.8

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-EEeCCccceEEEE-eC----------CCCeEEEEeCCCCEEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLA-SWKGHEGEILQLV-TA----------DDGTLISSSLDQTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~-~~----------~~~~~~~~~~~~~i~~~~   68 (86)
                      ++++++|+|++.++++++.++.+++||..+++... .+.+|...|.++. +|          ++..+++++.|+.+++|+
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~  243 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  243 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE
Confidence            47899999999999999999999999998887654 4567888899987 65          356789999999999999


Q ss_pred             CCC-CeEEEeecCCCCCC
Q psy13945         69 TND-GSLKCNIQGPTEPV   85 (86)
Q Consensus        69 ~~~-~~~~~~~~~~~~~v   85 (86)
                      ++. .+.+..+.+|.+.|
T Consensus       244 ~~~~~~~~~~~~~h~~~V  261 (287)
T d1pgua2         244 VKRPMKIIKALNAHKDGV  261 (287)
T ss_dssp             SSCTTCCEEETTSSTTCE
T ss_pred             CCCCCeEEEEeCCCCCCe
Confidence            876 56777788898765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.3e-16  Score=80.27  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=64.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE---EEEeCCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCeEE
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL---ASWKGHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGSLK   75 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~   75 (86)
                      .|++++|+|++++|++++.|++|++||+......   ....+|...|.++. +++ +..+++++.|+.+++|+.......
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence            4899999999999999999999999998765432   23346889999999 765 567889999999999999876655


Q ss_pred             EeecC
Q psy13945         76 CNIQG   80 (86)
Q Consensus        76 ~~~~~   80 (86)
                      .....
T Consensus        93 ~~~~~   97 (342)
T d1yfqa_          93 QALTN   97 (342)
T ss_dssp             EECBS
T ss_pred             ccccc
Confidence            54443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-15  Score=78.50  Aligned_cols=85  Identities=21%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG--TSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      +|.+++|+||++++++++.|+.|++||+...  +....+..+...+..+. ++++..+++++.++.+.+|+++++++...
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3789999999999999999999999998743  44566778888999998 99999999999999999999999998888


Q ss_pred             ecCCCCCC
Q psy13945         78 IQGPTEPV   85 (86)
Q Consensus        78 ~~~~~~~v   85 (86)
                      ...|...|
T Consensus       179 ~~~~~~~v  186 (337)
T d1gxra_         179 FQGHTDGA  186 (337)
T ss_dssp             ECCCSSCE
T ss_pred             cccccccc
Confidence            88887654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.5e-15  Score=77.22  Aligned_cols=75  Identities=23%  Similarity=0.487  Sum_probs=65.4

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++|+++  +++++++|+.|++|++||..+++.+..+.+|...|.+++ +++ ..+++++.|+.+++|+...........
T Consensus        16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~   91 (355)
T d1nexb2          16 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE   91 (355)
T ss_dssp             EEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc
Confidence            355554  688999999999999999999999999999999999999 775 578999999999999998887766554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.7e-15  Score=80.60  Aligned_cols=85  Identities=11%  Similarity=0.083  Sum_probs=72.5

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCC------------------ceEEEEeCCccceEEEE-eCCCCeEEEEeCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTG------------------TSLASWKGHEGEILQLV-TADDGTLISSSLD   61 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~   61 (86)
                      .|.+++|+|+++++++++.|+++++|+....                  ........|...+.++. +|++..+++++.|
T Consensus       143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence            3789999999999999999999999997532                  22344456778899999 9999999999999


Q ss_pred             CCEEEEeCCCCeEEEeecCCCCCC
Q psy13945         62 QTISAWHTNDGSLKCNIQGPTEPV   85 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~~~~~~v   85 (86)
                      +.+++||+..++.+..+..|...|
T Consensus       223 ~~i~iwd~~~~~~~~~~~~~~~~v  246 (371)
T d1k8kc_         223 STVCLADADKKMAVATLASETLPL  246 (371)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             CcceEEeeecccceeeeecccccc
Confidence            999999999999999888887665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=6.8e-15  Score=75.88  Aligned_cols=70  Identities=21%  Similarity=0.271  Sum_probs=60.9

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      +|++++|+||++++++++.|+.|++||+.+++....+. .|...|.++. +|++. +++++.|+.+++|+...
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSS
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCC
Confidence            58999999999999999999999999999988877764 5888999999 88876 55677899999998753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-14  Score=74.76  Aligned_cols=74  Identities=24%  Similarity=0.434  Sum_probs=63.8

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      +++++|+++++|+.|++|++||+.+++.+..+.+|...|.++. +++  .+++++.|+.+++|+............+
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~   96 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH   96 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccccc
Confidence            3566889999999999999999999999999999999999998 764  8899999999999999877666555433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1e-14  Score=75.23  Aligned_cols=73  Identities=23%  Similarity=0.413  Sum_probs=64.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceE---EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL---ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +|.+++|+|++.++++++.++.+++||..++...   ..+.+|...|.++. +|++..+++++.|+.+++||++++.
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            4789999999999999999999999998876553   34566888999999 9999999999999999999998653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=7.7e-14  Score=73.15  Aligned_cols=85  Identities=18%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CeeEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEEEe---CCccceEEEE-eCC-CCeEEEEeCCCCEEEEeCCCCeE
Q psy13945          1 LIRCIAVSSSGSW-IAIGQASGVLTLLDLRTGTSLASWK---GHEGEILQLV-TAD-DGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         1 ~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      +|.+++|+|++.. +++++.|+.+++||....+......   .+...|.+++ +|+ +..+++++.|+.|++||+++++.
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~  240 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF  240 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             ccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc
Confidence            4788999998865 6789999999999988777655543   4567799999 886 67889999999999999999999


Q ss_pred             EEeecCCCCCC
Q psy13945         75 KCNIQGPTEPV   85 (86)
Q Consensus        75 ~~~~~~~~~~v   85 (86)
                      +..+.+|...+
T Consensus       241 ~~~l~~~~~~v  251 (325)
T d1pgua1         241 LKYIEDDQEPV  251 (325)
T ss_dssp             EEECCBTTBCC
T ss_pred             ccccccccccc
Confidence            99998887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=5.5e-13  Score=69.73  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             CeeEEEECCCCCEEEEEeCC--CeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEe
Q psy13945          1 LIRCIAVSSSGSWIAIGQAS--GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      .|.+++|+|||+.++.++.+  ..+++||..+++. ..+..+...+..+. +|++..+++++.++.+.+|+..+++....
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  122 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  122 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeee
Confidence            47899999999988765544  3799999887765 45677888999999 99999999999999999999999888887


Q ss_pred             ecCCCCC
Q psy13945         78 IQGPTEP   84 (86)
Q Consensus        78 ~~~~~~~   84 (86)
                      +..|...
T Consensus       123 ~~~~~~~  129 (360)
T d1k32a3         123 ERSREAM  129 (360)
T ss_dssp             EECSSSC
T ss_pred             eeccccc
Confidence            7766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3.2e-13  Score=69.26  Aligned_cols=68  Identities=19%  Similarity=0.345  Sum_probs=56.9

Q ss_pred             CeeEEEECCC----------CCEEEEEeCCCeEEEEEccC-CceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEe
Q psy13945          1 LIRCIAVSSS----------GSWIAIGQASGVLTLLDLRT-GTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWH   68 (86)
Q Consensus         1 ~i~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~   68 (86)
                      +|.+++|+|+          +.++++|+.|+.+++||+.. .+....+.+|...|.++. ++++ .+++++.|+.|++|+
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            4678888764          46899999999999999876 455666778999999999 8775 588999999999998


Q ss_pred             C
Q psy13945         69 T   69 (86)
Q Consensus        69 ~   69 (86)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.46  E-value=4.2e-13  Score=72.54  Aligned_cols=81  Identities=10%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEE--Ee---CCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS--WK---GHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~---~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~   74 (86)
                      +..++|+|||+++++++.|+++++||+.+++....  +.   ++...+.++. +|++..+ +++..++.+.+||...+.+
T Consensus        64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            57899999999999999999999999988875432  22   3444455566 6898876 4566889999999999988


Q ss_pred             EEeecCCC
Q psy13945         75 KCNIQGPT   82 (86)
Q Consensus        75 ~~~~~~~~   82 (86)
                      ...+..|.
T Consensus       144 ~~~~~~~~  151 (426)
T d1hzua2         144 KQIVSTRG  151 (426)
T ss_dssp             EEEEECCE
T ss_pred             eEEeeccC
Confidence            87776554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=3.4e-13  Score=73.36  Aligned_cols=81  Identities=12%  Similarity=0.049  Sum_probs=63.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCce--EEEEe---CCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS--LASWK---GHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~---~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~   74 (86)
                      +..++|+|||+++++++.++.+.+||+.+++.  ...+.   .+...+.+.. +|++..+ +++..++.+.+||..++++
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence            67899999999999999999999999887653  23333   2334444555 6788875 7888899999999999998


Q ss_pred             EEeecCCC
Q psy13945         75 KCNIQGPT   82 (86)
Q Consensus        75 ~~~~~~~~   82 (86)
                      +..+..|.
T Consensus       144 ~~~~~~~~  151 (432)
T d1qksa2         144 KKIQSTRG  151 (432)
T ss_dssp             EEEEECCE
T ss_pred             eeeeccCC
Confidence            88776553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-11  Score=63.36  Aligned_cols=78  Identities=22%  Similarity=0.433  Sum_probs=65.3

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (86)
                      ...+.+++..+++++.|+.+++||...++....+.+|...+.++. +++..+++++.|+.|++|+....+....+..+.
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-EETTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe-cCCCEEEEEcCCCEEEEEecccccccccccccc
Confidence            344556789999999999999999999999888898888888775 335689999999999999999888777776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=3e-11  Score=62.60  Aligned_cols=80  Identities=29%  Similarity=0.444  Sum_probs=72.1

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecCCCCC
Q psy13945          6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEP   84 (86)
Q Consensus         6 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   84 (86)
                      .+.++++.++.+..++.+++||..+++......++...+.++. ++++..+++++.|+.+++|+.+++..+..+.+|...
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            3456788999999999999999999988888888888888888 999999999999999999999999999999999877


Q ss_pred             C
Q psy13945         85 V   85 (86)
Q Consensus        85 v   85 (86)
                      |
T Consensus       246 v  246 (355)
T d1nexb2         246 V  246 (355)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=1.3e-11  Score=64.11  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC-CccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG-HEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ++|+++++++++++.++.|.+||+.+++.+.++.. +......+. +|++..+ +++..++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            57899999999999999999999999999888764 455667888 9998876 566788999999999998877664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.1e-12  Score=67.67  Aligned_cols=68  Identities=15%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ++++++|+|++++|++|+.|+.|++||+.+++.+..+..+ .....+. ++++..+++++.|..+++|..
T Consensus       253 ~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            3679999999999999999999999999999888777543 2334556 788899998888887777754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-11  Score=61.51  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCC---------CeEEEeec
Q psy13945          9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTND---------GSLKCNIQ   79 (86)
Q Consensus         9 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~   79 (86)
                      +++..+++++.|+.+++||..+........++...+... .++...+++++.|+.|++||+..         ..++..+.
T Consensus       186 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (293)
T d1p22a2         186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  264 (293)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCCCeEEEecCCCEEEEEecccceeeeeecccceeeeec-cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec
Confidence            356789999999999999999988888888877776544 66778999999999999998642         35778888


Q ss_pred             CCCCCC
Q psy13945         80 GPTEPV   85 (86)
Q Consensus        80 ~~~~~v   85 (86)
                      +|.+.|
T Consensus       265 ~H~~~V  270 (293)
T d1p22a2         265 EHSGRV  270 (293)
T ss_dssp             CCSSCC
T ss_pred             CCCCCE
Confidence            898776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=1.4e-10  Score=60.48  Aligned_cols=78  Identities=13%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe----------CCCCEEEEeC
Q psy13945          1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS----------LDQTISAWHT   69 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------~~~~i~~~~~   69 (86)
                      .+.+++|+||++++++++.++.+++|+...++....+..+...+.++. +|++..++...          .++.+++|+.
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             eEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence            367899999999999999999999999999988888888888888899 99999987543          3346889999


Q ss_pred             CCCeEEEee
Q psy13945         70 NDGSLKCNI   78 (86)
Q Consensus        70 ~~~~~~~~~   78 (86)
                      .+++.....
T Consensus       167 ~~~~~~~~~  175 (360)
T d1k32a3         167 EGRKIFAAT  175 (360)
T ss_dssp             TTTEEEECS
T ss_pred             ccCceeeec
Confidence            888766544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.21  E-value=2e-10  Score=62.02  Aligned_cols=61  Identities=11%  Similarity=0.014  Sum_probs=54.1

Q ss_pred             EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeE
Q psy13945         13 WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSL   74 (86)
Q Consensus        13 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~   74 (86)
                      ++++.+.+++|++||..+++++.++..+ ..+..+. +|+++.+++++.|+.+++||+.+++.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~   95 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP   95 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce
Confidence            5678889999999999999999998876 4578899 99999999999999999999987753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.14  E-value=3.8e-09  Score=53.85  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             eEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEEe
Q psy13945          3 RCIAVSSSGSWIAIGQ---ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKCN   77 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~   77 (86)
                      ..+++++++..++.+.   .++.+.+||..+++....+..+ ..+..++ +|++..+ +++..++.|.+||+.+++.+.+
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            4678999998766543   3467999999999887776643 4568888 9999876 6778899999999999998877


Q ss_pred             ec
Q psy13945         78 IQ   79 (86)
Q Consensus        78 ~~   79 (86)
                      +.
T Consensus       282 ~~  283 (301)
T d1l0qa2         282 MA  283 (301)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=2.7e-09  Score=55.03  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +....+++++.+++..  ++.+.+||..+++.+..+. +...+.++. +|++..++.++.++.|.+||..+++.+..+.
T Consensus       243 ~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            3466788888887765  4789999999999887765 355678899 9999999999999999999999998887765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.12  E-value=1.8e-09  Score=55.86  Aligned_cols=78  Identities=12%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +..+.+++++..++... .+.+.+||..+++.+..+. ....+.++. +|++..+++++.++.|.+||.++++.+..+.-
T Consensus       254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            34567777777666554 4579999999998877665 345678899 99999999999999999999999999988874


Q ss_pred             C
Q psy13945         81 P   81 (86)
Q Consensus        81 ~   81 (86)
                      +
T Consensus       332 p  332 (346)
T d1jmxb_         332 P  332 (346)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.11  E-value=1.1e-09  Score=56.58  Aligned_cols=70  Identities=7%  Similarity=-0.024  Sum_probs=57.8

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEEeecCC
Q psy13945         12 SWIAIGQASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (86)
                      +++++++.++.|.+||..+++.+..+..+  ...+..+. +|++..+ ++++.++.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            57899999999999999999998887653  34567788 9999876 56778899999999999888776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.10  E-value=4.9e-09  Score=53.40  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             eeEEEECCCCCEE-EEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeE-EEEeCCCCEEEEeCCCCeEEEee
Q psy13945          2 IRCIAVSSSGSWI-AIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTL-ISSSLDQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         2 i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~   78 (86)
                      ...++|+|||+++ +++..++.|.+||+.+++.+..+..+.. ...+. .+++..+ +++..+..+.+|+..+++....+
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeec
Confidence            4678999999976 5777889999999999998888876544 46677 7887755 56667788999999998888777


Q ss_pred             cCC
Q psy13945         79 QGP   81 (86)
Q Consensus        79 ~~~   81 (86)
                      ..+
T Consensus       113 ~~~  115 (301)
T d1l0qa2         113 KTG  115 (301)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=5.2e-09  Score=56.80  Aligned_cols=60  Identities=12%  Similarity=-0.019  Sum_probs=53.3

Q ss_pred             EEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945         13 WIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus        13 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ++++.+.++++.+||..+++++..+..+ ..+..+. +|+++.+++++.|+.+.+||+.+++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            3589999999999999999999998765 4688889 9999999999999999999988754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.95  E-value=1.5e-08  Score=52.82  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             EEEECCCCCEEEEEeCC----------CeEEEEEccCCceEEEEeCCccceEEEE-eCCCC--eEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQAS----------GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG--TLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~~~~~~~~~~i~~~~~~   70 (86)
                      .+++++++..++....+          ..+.+||..+++....+.. ...+.++. +|++.  .++++..++.|.+||.+
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            46788888877654433          3689999999988777653 34567888 89987  45677889999999999


Q ss_pred             CCeEEEeecCC
Q psy13945         71 DGSLKCNIQGP   81 (86)
Q Consensus        71 ~~~~~~~~~~~   81 (86)
                      +++.+..+.++
T Consensus       332 tg~~~~~i~~~  342 (355)
T d2bbkh_         332 SGEELRSVNQL  342 (355)
T ss_dssp             TCCEEEEECCC
T ss_pred             CCCEEEEEeCc
Confidence            99999988654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.91  E-value=7.3e-08  Score=50.59  Aligned_cols=67  Identities=10%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             EEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCe--EEEEeCCCCEEEEeCCCCeEEEeecCCC
Q psy13945         15 AIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGT--LISSSLDQTISAWHTNDGSLKCNIQGPT   82 (86)
Q Consensus        15 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~   82 (86)
                      +....++.+.+||..+++....+. +...+..+. +|++..  +++++.++.|++||..+++.+..+..+.
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence            345556788999999988877665 456678888 899873  4688999999999999999999997653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.90  E-value=3.1e-08  Score=52.05  Aligned_cols=79  Identities=16%  Similarity=0.041  Sum_probs=59.9

Q ss_pred             CeeEEEECCCCCEEEEEe-----CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe----------CCCCE
Q psy13945          1 LIRCIAVSSSGSWIAIGQ-----ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS----------LDQTI   64 (86)
Q Consensus         1 ~i~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------~~~~i   64 (86)
                      ++..++++|||+.++...     ....+.+||..+++.+..+..+...  .+. +|++..++.+.          .++.+
T Consensus        22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v   99 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEE
Confidence            456788999999876542     3457999999999998887655443  567 89999987764          34679


Q ss_pred             EEEeCCCCeEEEeecCC
Q psy13945         65 SAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~~~   81 (86)
                      .+||..+++.+..+..+
T Consensus       100 ~v~D~~t~~~~~~~~~~  116 (373)
T d2madh_         100 EVFDPVTFLPIADIELP  116 (373)
T ss_pred             EEEECCCCcEEEEEecC
Confidence            99999999887776544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.3e-07  Score=48.69  Aligned_cols=73  Identities=10%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             eeEEEECCCCCEEE-EEeCCCeEEEEEccCCceEEEE---eCCccceEEEE-eCCCCeEEEEeC-CCCEEEEeCCCCeE
Q psy13945          2 IRCIAVSSSGSWIA-IGQASGVLTLLDLRTGTSLASW---KGHEGEILQLV-TADDGTLISSSL-DQTISAWHTNDGSL   74 (86)
Q Consensus         2 i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~   74 (86)
                      +..++|+|||++++ ++..++.+.+|++........+   .........+. +|++..++.++. +..+.+|+......
T Consensus        39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~  117 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  117 (333)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc
Confidence            56899999999875 4555899999998755432222   22334456788 999998887764 66788888765543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.74  E-value=5.3e-08  Score=50.72  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=56.5

Q ss_pred             eEEEECCCCCEEEEEe-----CCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEE----------eCCCCEEE
Q psy13945          3 RCIAVSSSGSWIAIGQ-----ASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISS----------SLDQTISA   66 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~----------~~~~~i~~   66 (86)
                      .-.+.+||++.++...     ....+.+||..+++.+..+.....  ..+. +|++..++..          ..++.|.+
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            3346689999887653     355799999999998887765433  3577 9999877653          34678999


Q ss_pred             EeCCCCeEEEeecC
Q psy13945         67 WHTNDGSLKCNIQG   80 (86)
Q Consensus        67 ~~~~~~~~~~~~~~   80 (86)
                      ||..+++.+..+..
T Consensus        83 ~D~~t~~~~~~~~~   96 (355)
T d2bbkh_          83 FDPVTLLPTADIEL   96 (355)
T ss_dssp             ECTTTCCEEEEEEE
T ss_pred             EECCCCCEEEEEec
Confidence            99999988776643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.68  E-value=1.2e-07  Score=51.47  Aligned_cols=76  Identities=11%  Similarity=0.021  Sum_probs=59.5

Q ss_pred             eeEEEECCCCCEEEEEeC---------CCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQA---------SGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTND   71 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~   71 (86)
                      |.++.|+|||+.|+.+++         .+.+.+||+.+++. ..+..+...+..+. +|++..++.. .+..+.+|+...
T Consensus        64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~  141 (470)
T d2bgra1          64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN  141 (470)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred             cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCC
Confidence            578899999999887754         45778999988764 45666777888888 9999998874 567899999888


Q ss_pred             CeEEEeec
Q psy13945         72 GSLKCNIQ   79 (86)
Q Consensus        72 ~~~~~~~~   79 (86)
                      +...+...
T Consensus       142 g~~~~~t~  149 (470)
T d2bgra1         142 LPSYRITW  149 (470)
T ss_dssp             SCCEECCS
T ss_pred             Cceeeeee
Confidence            87665443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.58  E-value=6.8e-07  Score=47.11  Aligned_cols=78  Identities=13%  Similarity=0.038  Sum_probs=58.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEEccCCceEEEEeCCcc-------ceEEEE-eCCCCeEEEEe-CCCCE
Q psy13945          4 CIAVSSSGSWIAIGQ----------ASGVLTLLDLRTGTSLASWKGHEG-------EILQLV-TADDGTLISSS-LDQTI   64 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~v~~~~-~~~~~~~~~~~-~~~~i   64 (86)
                      .++|+|||+.++..+          .+..|.+||..+++....+..+..       ....+. +|++..++.+. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            578999999887654          467899999999888776653321       123467 89998887665 57899


Q ss_pred             EEEeCCCCeEEEeecCC
Q psy13945         65 SAWHTNDGSLKCNIQGP   81 (86)
Q Consensus        65 ~~~~~~~~~~~~~~~~~   81 (86)
                      .+||..+++....+..+
T Consensus       149 ~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEETTTEEEEEEECS
T ss_pred             EEEECCCCcEeEEeecc
Confidence            99999999888776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=1.5e-06  Score=45.79  Aligned_cols=76  Identities=8%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             EEEECCCCCEEEEEeCC---------CeEEEEEccCCceEEEEeCCccceEEEE-eCCCC--eEEEEeCCCCEEEEeCCC
Q psy13945          4 CIAVSSSGSWIAIGQAS---------GVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG--TLISSSLDQTISAWHTND   71 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~~~~~~~~~~i~~~~~~~   71 (86)
                      .+++++++..++....+         ..+.+||..+++.+..+.. ...+..+. +|++.  .+++...++.|.+||..+
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            35677777765543221         3588999999988766653 34567788 89976  346777889999999999


Q ss_pred             CeEEEeecC
Q psy13945         72 GSLKCNIQG   80 (86)
Q Consensus        72 ~~~~~~~~~   80 (86)
                      ++.+..+.-
T Consensus       347 gk~~~~i~~  355 (368)
T d1mdah_         347 DQDQSSVEL  355 (368)
T ss_dssp             CEEEEECCC
T ss_pred             CCEEEEEEC
Confidence            999988863

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2e-07  Score=47.97  Aligned_cols=60  Identities=13%  Similarity=0.162  Sum_probs=44.4

Q ss_pred             EEEEEeCCCeEEEEEccCCceEE--EEeCCccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCC
Q psy13945         13 WIAIGQASGVLTLLDLRTGTSLA--SWKGHEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDG   72 (86)
Q Consensus        13 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~   72 (86)
                      .++++..++.|++|++.....+.  ....+...+..+. +|+++.++ ++..++.|.+|++...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            35778899999999987543322  2234667888999 99999885 5556899999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.09  E-value=1.8e-05  Score=42.87  Aligned_cols=77  Identities=9%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeC-----CccceEEEE-eCCCCeEEEEeC---------CCCEEEEe
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKG-----HEGEILQLV-TADDGTLISSSL---------DQTISAWH   68 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~v~~~~-~~~~~~~~~~~~---------~~~i~~~~   68 (86)
                      .+.|.+|++++..  .++.+.+||..+++....+..     +...+.++. +||+..++.+..         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4578888887764  467899999999887654443     345788999 999999887642         45778999


Q ss_pred             CCCCeEEEeecCCCC
Q psy13945         69 TNDGSLKCNIQGPTE   83 (86)
Q Consensus        69 ~~~~~~~~~~~~~~~   83 (86)
                      +.+++. ..+..+.+
T Consensus        99 ~~~~~~-~~l~~~~~  112 (470)
T d2bgra1          99 LNKRQL-ITEERIPN  112 (470)
T ss_dssp             TTTTEE-CCSSCCCT
T ss_pred             CCCCcc-cccccCCc
Confidence            988764 33444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.90  E-value=0.00022  Score=36.69  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      +..++++|||+++++...+++|+.++.. ++. ..+.........+. .+++.++++...+..+..++.
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            5678999999999999989999888744 433 23333446678888 899999888888777776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.06  E-value=0.0049  Score=31.95  Aligned_cols=67  Identities=4%  Similarity=0.051  Sum_probs=50.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCC-eEEEEeCCCCEEEEeCC
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDG-TLISSSLDQTISAWHTN   70 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~~i~~~~~~   70 (86)
                      .+++..+|++.++....+.|.++|.+.+.....+........+++ .+++. ++++...++.|.-.+..
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            577888999888887888999999776766565555555667788 78775 56777777878777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.0073  Score=30.57  Aligned_cols=70  Identities=11%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             eeEEEECCCCCEEEEEe-CCCeEEEEEccCCceEEEEeCC--ccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQ-ASGVLTLLDLRTGTSLASWKGH--EGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      ...+++.++|+.+++-. .+..|.+++ .+++.+..+...  ......++ .+++..+++ ..++.|++|.+.+..
T Consensus       202 P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         202 PIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeec
Confidence            35788999999777654 345688887 557766555432  23457778 888876654 578899999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.59  E-value=0.015  Score=30.68  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=47.3

Q ss_pred             eeEEEECCCCCEEEEEeC-CCeEEEEEccC-CceE--EEEeC--CccceEEEE-eCCCCeEE-EEeCCCCEEEEeCCCC
Q psy13945          2 IRCIAVSSSGSWIAIGQA-SGVLTLLDLRT-GTSL--ASWKG--HEGEILQLV-TADDGTLI-SSSLDQTISAWHTNDG   72 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~--~~~~~--~~~~v~~~~-~~~~~~~~-~~~~~~~i~~~~~~~~   72 (86)
                      ++++.|+|||++++..+. ...+.+++... +...  .....  .......+. +|++..+. +.-.+++|.+|++..+
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            468999999998777654 34778877543 3322  22221  234556777 89988764 5567889999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.58  E-value=0.0098  Score=32.60  Aligned_cols=67  Identities=13%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             eEEEECCCCCEE-EEEeCCCeEEEEEccCCceE--------EEEeCCcc---ceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          3 RCIAVSSSGSWI-AIGQASGVLTLLDLRTGTSL--------ASWKGHEG---EILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~---~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ..+.++|||+++ +++..+.++.+||+.+....        ..+.++..   ...... .+++..+.+...|.++..|++
T Consensus       261 hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         261 HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            468899999975 56788999999998642210        11111111   111223 456777778889999999986

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.54  E-value=0.011  Score=32.37  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=47.0

Q ss_pred             EEEEeCCCeEEEEEccCCceEEEEeCC------------------------------ccceEEEE-eCCCCeEE-EEeCC
Q psy13945         14 IAIGQASGVLTLLDLRTGTSLASWKGH------------------------------EGEILQLV-TADDGTLI-SSSLD   61 (86)
Q Consensus        14 ~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~-~~~~~~~~-~~~~~   61 (86)
                      +++++.+|.+++|++.+++.+.++...                              ........ .|++++++ ....+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            667888999999999988876664221                              11223344 67888774 55677


Q ss_pred             CCEEEEeCCCCeEEEeec
Q psy13945         62 QTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        62 ~~i~~~~~~~~~~~~~~~   79 (86)
                      ..|.++|+.+.++...+.
T Consensus        94 ~rVavIDl~t~k~~~ii~  111 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITH  111 (441)
T ss_dssp             TEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEe
Confidence            899999999988776553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.02  Score=28.56  Aligned_cols=68  Identities=7%  Similarity=0.041  Sum_probs=46.9

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      .++++.++++++++......+..++...................+. .+++.++++....+.+..++..
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            4688889999888888888899888664333222122334446677 7888888888777888777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.13  E-value=0.027  Score=28.74  Aligned_cols=72  Identities=17%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEEEe-CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCCe
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTG--TSLASWK-GHEGEILQLV-TADDGTLISSSLDQTISAWHTNDGS   73 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~   73 (86)
                      +.+++|++||+++++...+..+..++....  ....... ........+. .+++..+++...++.+..++...+.
T Consensus        70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          70 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            468999999999998888888887776533  2222111 2334566777 7888888888888888888877654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.035  Score=27.35  Aligned_cols=72  Identities=18%  Similarity=0.099  Sum_probs=43.1

Q ss_pred             eEEEECCCCCEEEEEeCC-CeEE--EEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe---CCCCEEEEeCCCCeEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS-GVLT--LLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS---LDQTISAWHTNDGSLK   75 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~   75 (86)
                      ....|+|++..++..+.+ +...  +.+...+..  ............. +|++..++-.+   ....+.++++..+...
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            356789999887755443 3444  444443332  2333344556667 89999876333   3456788888766544


Q ss_pred             E
Q psy13945         76 C   76 (86)
Q Consensus        76 ~   76 (86)
                      +
T Consensus       252 ~  252 (269)
T d2hqsa1         252 R  252 (269)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.56  E-value=0.045  Score=26.98  Aligned_cols=69  Identities=16%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe-CC---C--CEEEEeCCCCeEEE
Q psy13945          6 AVSSS--GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS-LD---Q--TISAWHTNDGSLKC   76 (86)
Q Consensus         6 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~---~--~i~~~~~~~~~~~~   76 (86)
                      ..+||  |..++..+ ++.|.+.|+..++.. .+......+.... +|++..++-.. .+   .  .+.+.+...+...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  88877654 457888898877754 4454556677778 99999886432 22   1  35666666665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.32  E-value=0.061  Score=27.06  Aligned_cols=74  Identities=12%  Similarity=0.223  Sum_probs=50.7

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeC-CCCEEEEeCCCCeEEEee
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSL-DQTISAWHTNDGSLKCNI   78 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~   78 (86)
                      ..+++.++++.+++....+.|.++|. .++.+..+.  +.......++ .+++..+++-.. +..|.+++. +++.+..+
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~  237 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL  237 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred             ceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEE
Confidence            46778888888888888889999985 455555553  2333456777 788888776544 446888874 56655554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.22  E-value=0.074  Score=27.41  Aligned_cols=59  Identities=8%  Similarity=0.111  Sum_probs=43.0

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeC
Q psy13945          2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL   60 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~   60 (86)
                      +..++|.++|++.++-...+.|..++...++..............+. .+++.++++...
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~  101 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG  101 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecC
Confidence            35789999999888877888888888766655554444445567788 888888876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.13  E-value=0.069  Score=26.57  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccceEEEE-eCCCCeEEEEeCCCCEEEEeC
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLV-TADDGTLISSSLDQTISAWHT   69 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~   69 (86)
                      ..+++.++|.++++....+.+..++..... ..... ..-.....++ .+++.++++-..++.|+..+.
T Consensus       185 ~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         185 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            567888888888877777777777644332 22221 1223446777 777877777666666665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.84  E-value=0.099  Score=26.92  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             eEEEECCCCCEE-EEEeCCCeEEEEEccCC-ceEEEE-------eCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWI-AIGQASGVLTLLDLRTG-TSLASW-------KGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~~~-------~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      +.++|++|++.+ ++-...+.|..+++... ......       ......--.+. ..++.++++....+.|.+++. .|
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            568999999754 55566788999987532 211111       11111223566 788998888889999999995 67


Q ss_pred             eEEEeec
Q psy13945         73 SLKCNIQ   79 (86)
Q Consensus        73 ~~~~~~~   79 (86)
                      +.+..+.
T Consensus       259 ~~l~~i~  265 (319)
T d2dg1a1         259 YPIGQIL  265 (319)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            7666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.083  Score=25.95  Aligned_cols=57  Identities=18%  Similarity=0.087  Sum_probs=36.4

Q ss_pred             eeEEEECCCCCEEEEEeCCC---eEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEe
Q psy13945          2 IRCIAVSSSGSWIAIGQASG---VLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSS   59 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~   59 (86)
                      +...+|||||+.|+......   .+.+.+...+.. ..+..+........ +|++..++...
T Consensus        41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEee
Confidence            45789999999987554332   355556554443 33344556666677 88888776544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.12  Score=28.26  Aligned_cols=74  Identities=9%  Similarity=-0.017  Sum_probs=45.7

Q ss_pred             eEEEECCCCCEEEEEeC---------CCeEEEEEccCCceEEEEe--CCccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQA---------SGVLTLLDLRTGTSLASWK--GHEGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~--~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ....++||++.++.+.+         .+...++|+.++.......  .....+.... +|++..++-.. ++.+.+.+..
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~  142 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV  142 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence            45678999998776543         4567889988776533221  2233444456 78988876443 4566666665


Q ss_pred             CCeEEEe
Q psy13945         71 DGSLKCN   77 (86)
Q Consensus        71 ~~~~~~~   77 (86)
                      .+...+.
T Consensus       143 ~~~~~~l  149 (465)
T d1xfda1         143 GKQAIRV  149 (465)
T ss_dssp             SSCCEEE
T ss_pred             CCceEEE
Confidence            5544443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.37  E-value=0.19  Score=28.23  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.+.-+|..+++..=..............-.+.+++.+..|+.++.+|.++|+.+..+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            45666666666653222211110000111234566678999999999999999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.42  E-value=0.31  Score=27.33  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=37.9

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.+.-+|..+++..=..............-.+.+++.+..|+.++.+|.++|+.+..+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            46777888887765333221110001112245667778899999999999999998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.36  E-value=0.32  Score=27.32  Aligned_cols=28  Identities=25%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         52 DGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        52 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.+++.+..|+.++.+|.++|+.+..+.
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            4456678999999999999999998775

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.17  E-value=0.27  Score=25.88  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEEEeCCccceEEEE-eCCCCeEEEEeCCCCEE
Q psy13945          5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTIS   65 (86)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~   65 (86)
                      +..++.-..++.-...|.+.++|+.++..+..-+.....|..-+ ..+...++.-..+|.+.
T Consensus       261 mqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         261 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            44555556777778899999999999999888777777777555 56666777777777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.91  E-value=0.29  Score=25.62  Aligned_cols=70  Identities=14%  Similarity=0.192  Sum_probs=41.3

Q ss_pred             eEEEECCCCCEEEEEeCC------CeEEEEEccC-CceEEE--E---eCCccceEEEE-eC-CCCeEEE-EeCCCCEEEE
Q psy13945          3 RCIAVSSSGSWIAIGQAS------GVLTLLDLRT-GTSLAS--W---KGHEGEILQLV-TA-DDGTLIS-SSLDQTISAW   67 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~~~~--~---~~~~~~v~~~~-~~-~~~~~~~-~~~~~~i~~~   67 (86)
                      ..+.++|||++++++.+.      ..+..++... +.....  +   ......-..+. +| ++.+++. ...++.|.+|
T Consensus       258 ~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             cceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            367899999988876431      2366666543 222211  1   11122334566 66 6786654 4577899999


Q ss_pred             eCCCC
Q psy13945         68 HTNDG   72 (86)
Q Consensus        68 ~~~~~   72 (86)
                      ++...
T Consensus       338 ~~~~~  342 (365)
T d1jofa_         338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            87644

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.91  E-value=0.39  Score=27.16  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeec
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   79 (86)
                      +.+.-||..+++..=..............-.+.+++.+..|+.++.+|.++|+.+..+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            45677777777653221110000000111134566678999999999999999998775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.28  E-value=0.65  Score=25.99  Aligned_cols=60  Identities=8%  Similarity=0.021  Sum_probs=37.0

Q ss_pred             CeEEEEEccCCceEEEEeCCccceEEEEeCCCCeEEEEeCCCCEEEEeCCCCeEEEeecC
Q psy13945         21 GVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQG   80 (86)
Q Consensus        21 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (86)
                      +.+..+|..+++..=..............-.+.+++.+..|+.++.+|.++|+.+..+.-
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            456777877777643222111100011111345666789999999999999999987753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=90.23  E-value=0.61  Score=23.91  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             eEEEECCCCCEEEEEeC-------CCeEEEEEccCCceEEEEeCC----ccceEEEE-eCCCCeEEEEeCCCCEEEEeCC
Q psy13945          3 RCIAVSSSGSWIAIGQA-------SGVLTLLDLRTGTSLASWKGH----EGEILQLV-TADDGTLISSSLDQTISAWHTN   70 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~----~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~   70 (86)
                      ..++|.++|++.++...       ++.|..||..++.........    ...-..+. .+++..++.+.....+...+..
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~  100 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD  100 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence            57889999998776443       356778887766543322211    12234566 7888777767666677777765


Q ss_pred             CC
Q psy13945         71 DG   72 (86)
Q Consensus        71 ~~   72 (86)
                      .+
T Consensus       101 g~  102 (314)
T d1pjxa_         101 GT  102 (314)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.08  E-value=0.95  Score=24.63  Aligned_cols=31  Identities=10%  Similarity=0.175  Sum_probs=25.3

Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q psy13945          3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTS   33 (86)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   33 (86)
                      .+++|.||++++++-...|.|++++..+++.
T Consensus        30 ~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          30 HALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             eEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            5899999999998876678999888666544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.34  E-value=0.89  Score=24.34  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             eEEEECCCCCEEEE-----EeCCCeEEEEEccCCceEE
Q psy13945          3 RCIAVSSSGSWIAI-----GQASGVLTLLDLRTGTSLA   35 (86)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~   35 (86)
                      ...+++||+++++.     |++...++++|+.+++.+.
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~  165 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP  165 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence            45678999988773     3333569999999988653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=1.9  Score=23.45  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=34.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEEEe-CCccce-----------------EEEE-eCCCCeEEEEe
Q psy13945          4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEI-----------------LQLV-TADDGTLISSS   59 (86)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v-----------------~~~~-~~~~~~~~~~~   59 (86)
                      ...|+|||+.++-.. +..|.+.+...+....... +....+                 ..+. +|++..++...
T Consensus       118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            357899999887665 5577777766555433322 221111                 3456 79999887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.03  E-value=1.4  Score=21.37  Aligned_cols=57  Identities=19%  Similarity=0.056  Sum_probs=32.7

Q ss_pred             eeEEEECCCCCEEEEEe-CC-----CeEEEEEccCCceEEEEe------CCccceEEEE-eCCCCeEEEE
Q psy13945          2 IRCIAVSSSGSWIAIGQ-AS-----GVLTLLDLRTGTSLASWK------GHEGEILQLV-TADDGTLISS   58 (86)
Q Consensus         2 i~~~~~~~~~~~~~~~~-~~-----~~v~~~~~~~~~~~~~~~------~~~~~v~~~~-~~~~~~~~~~   58 (86)
                      +....|||||+.|+... .+     ..+.+++...++......      .......... +|++..++..
T Consensus        43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            35678999999877432 22     236677766665533211      1112334555 7888877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.79  E-value=1.6  Score=22.04  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             eEEEECCCCCEE-EEEeCCCeEEEEEccCC------ceE--EEEeCCccceEEEE-eCCCCeEEEEeCCCCEEEEeCCCC
Q psy13945          3 RCIAVSSSGSWI-AIGQASGVLTLLDLRTG------TSL--ASWKGHEGEILQLV-TADDGTLISSSLDQTISAWHTNDG   72 (86)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~------~~~--~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~~   72 (86)
                      ..++|++++..+ ++.+..+.|..++....      +..  ............+. ..++.+.++....+.|..++. ++
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G  229 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  229 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC
Confidence            578899998754 55566778888886421      111  11122233445666 678888887777888888885 46


Q ss_pred             eEEEeec
Q psy13945         73 SLKCNIQ   79 (86)
Q Consensus        73 ~~~~~~~   79 (86)
                      +.+..+.
T Consensus       230 ~~~~~i~  236 (295)
T d2ghsa1         230 NHIARYE  236 (295)
T ss_dssp             CEEEEEE
T ss_pred             cEeeEec
Confidence            5555543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.60  E-value=2.5  Score=23.93  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=44.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEeCCc-cceEEEE-eC--CCCeEEEEe------CCCCEEEEeCCCCeEEEeec
Q psy13945         12 SWIAIGQASGVLTLLDLRTGTSLASWKGHE-GEILQLV-TA--DDGTLISSS------LDQTISAWHTNDGSLKCNIQ   79 (86)
Q Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~~~-~~--~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~   79 (86)
                      ..++.+..++.|.-.|.++++..-.+.... ..-..+. .|  ....++.+.      ..+.|..+|.++|+.+..+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            468888889999999999999876654211 1111111 22  233344433      24789999999999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.24  E-value=2.1  Score=23.97  Aligned_cols=29  Identities=28%  Similarity=0.299  Sum_probs=24.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEe
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWK   38 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   38 (86)
                      .+.+++.|+.|+.++.+|..+++++=.+.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            56788889999999999999999875544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.08  E-value=2.1  Score=24.02  Aligned_cols=29  Identities=21%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEe
Q psy13945         10 SGSWIAIGQASGVLTLLDLRTGTSLASWK   38 (86)
Q Consensus        10 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   38 (86)
                      .+.+++.|+.|+.++.+|..+++++=.+.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            56788889999999999999999975544