Psyllid ID: psy13959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLYIQGSSRI
ccccccccccccccccEEccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEEccccccccEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEccccccccHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEcccccccc
cccEEEEcccccccEEEEEEEccccccEEEEEEcccccccccEEEEEEEEcccccccEEEEEEcccccccccEEEEccEcccEcccEEEEccccccccccEEEccccccccEEEcEcccccccccEcccccccEEEEEccccccEEEEEcccccEEEEccccEEEEccEccccHHHcccccHHHHHHHHcccccccccccHHHccHHHcccccccccccccccEEccccccccccEEHEEHccccccc
MGRVIRAQrkgagsvfrshnkhrkgapklrsldfaERHGYLKGVVRdiihdpgrgaplavvhfrnpykfktnkelfiapegmytgqfvycgkkatlqignvmpvggmpegtivcnleektgdrgrlarasgnyatviahnpdtkrtrvklpsgakkvipsanRAMVGIVagggridkpilKAGRAHYKykakrncwpkvrgvamnpvehphgggnhqhigkastvkrgtsagrKVSVLLLYIQGSSRI
mgrviraqrkgagsvfrshnkhrkgapklrsldfAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGrlarasgnyatviahnpdtkrtrvklpsgakkvipsanramvgivagggridkpilKAGRAHYKYKAKRNCWPKVRGVAMNPVehphgggnhqhiGKASTvkrgtsagrkVSVLLLYIQGSSRI
MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLYIQGSSRI
*******************************LDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTG***RLARASGNYATVIAH*****************VIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMN***************************RKVSVLLLYI******
*GRV*RA**********SHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGG******************GRKVSVLLLYIQGS***
**************************PKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLYIQGSSRI
**RVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLL**IQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLYIQGSSRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query248 2.2.26 [Sep-21-2011]
Q95V39257 60S ribosomal protein L8 N/A N/A 0.959 0.926 0.890 1e-123
Q6RYS3257 60S ribosomal protein L8 N/A N/A 0.959 0.926 0.890 1e-123
Q9V3G1256 60S ribosomal protein L8 yes N/A 0.959 0.929 0.869 1e-120
Q9U9L2261 60S ribosomal protein L8 yes N/A 0.959 0.911 0.852 1e-118
P41569261 60S ribosomal protein L8 N/A N/A 0.959 0.911 0.857 1e-118
Q6PBF0257 60S ribosomal protein L8 yes N/A 0.959 0.926 0.794 1e-110
P41116257 60S ribosomal protein L8 N/A N/A 0.959 0.926 0.789 1e-109
Q9XVF7260 60S ribosomal protein L8 yes N/A 0.959 0.915 0.735 1e-105
Q5R7Y8257 60S ribosomal protein L8 yes N/A 0.995 0.961 0.781 1e-104
P62919257 60S ribosomal protein L8 yes N/A 0.959 0.926 0.802 1e-104
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/238 (89%), Positives = 226/238 (94%)

Query: 1   MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
           MGRVIRAQRKGAGSVF SH K RKGAPKLRSLD+AERHGY+KGVV+DIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 60

Query: 61  VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKT 120
           VHFR+PYKFKT KELFIAPEG+YTGQFVYCGKKATL++GNVMPVG MPEGTIVCNLEEK 
Sbjct: 61  VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 120

Query: 121 GDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPIL 180
           GDRGRLARASGN+ATVI HNPD KRTRVKLPSGAKKV+PS+NR MVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 180

Query: 181 KAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVL 238
           KAGRA++KYK KRNCWP VRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV ++
Sbjct: 181 KAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238

Spodoptera frugiperda (taxid: 7108)
>sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1 Back     alignment and function description
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1 Back     alignment and function description
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2 Back     alignment and function description
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1 Back     alignment and function description
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3 Back     alignment and function description
>sp|P41116|RL8_XENLA 60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3 Back     alignment and function description
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7Y8|RL8_PONAB 60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3 Back     alignment and function description
>sp|P62919|RL8_RAT 60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
66516926257 PREDICTED: 60S ribosomal protein L8 [Api 0.959 0.926 0.924 1e-125
307200174257 60S ribosomal protein L8 [Harpegnathos s 0.959 0.926 0.924 1e-125
350408819257 PREDICTED: 60S ribosomal protein L8-like 0.959 0.926 0.920 1e-125
149689084258 60S ribosomal protein L8 [Triatoma infes 0.959 0.922 0.920 1e-125
383847717257 PREDICTED: 60S ribosomal protein L8-like 0.959 0.926 0.920 1e-125
62083405257 ribosomal protein L8 [Lysiphlebus testac 0.959 0.926 0.920 1e-125
340719245257 PREDICTED: 60S ribosomal protein L8-like 0.959 0.926 0.915 1e-125
312306048258 60S ribosomal protein L8 [Laodelphax str 0.959 0.922 0.911 1e-125
307182556257 60S ribosomal protein L8 [Camponotus flo 0.959 0.926 0.911 1e-124
70909647237 ribosomal protein L8e [Meladema coriacea 0.955 1.0 0.919 1e-124
>gi|66516926|ref|XP_393671.2| PREDICTED: 60S ribosomal protein L8 [Apis mellifera] gi|380017591|ref|XP_003692736.1| PREDICTED: 60S ribosomal protein L8-like [Apis florea] Back     alignment and taxonomy information
 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/238 (92%), Positives = 231/238 (97%)

Query: 1   MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
           MGRVIRAQRKGAGSVFRSH K RKGAPKLRSLDF+ERHGY+KGVV+DIIHDPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFRSHTKRRKGAPKLRSLDFSERHGYIKGVVKDIIHDPGRGAPLAV 60

Query: 61  VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKT 120
           VHFR+PYKFKT KELFIAPEGMYTGQF+YCGKKA LQIGNVMPVG MPEGTIVCNLEEKT
Sbjct: 61  VHFRDPYKFKTRKELFIAPEGMYTGQFLYCGKKANLQIGNVMPVGQMPEGTIVCNLEEKT 120

Query: 121 GDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPIL 180
           GDRGRLARASGNYATVIAHNPDTK+TRVKLPSGAKKVIPS NRAMVGIVAGGGRIDKPIL
Sbjct: 121 GDRGRLARASGNYATVIAHNPDTKKTRVKLPSGAKKVIPSNNRAMVGIVAGGGRIDKPIL 180

Query: 181 KAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVL 238
           KAGRA++KYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK+ ++
Sbjct: 181 KAGRAYHKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKIGLI 238

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307200174|gb|EFN80472.1| 60S ribosomal protein L8 [Harpegnathos saltator] gi|307212337|gb|EFN88141.1| 60S ribosomal protein L8 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350408819|ref|XP_003488525.1| PREDICTED: 60S ribosomal protein L8-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|149689084|gb|ABR27873.1| 60S ribosomal protein L8 [Triatoma infestans] Back     alignment and taxonomy information
>gi|383847717|ref|XP_003699499.1| PREDICTED: 60S ribosomal protein L8-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|62083405|gb|AAX62427.1| ribosomal protein L8 [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|340719245|ref|XP_003398066.1| PREDICTED: 60S ribosomal protein L8-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|312306048|gb|ADQ73877.1| 60S ribosomal protein L8 [Laodelphax striatella] Back     alignment and taxonomy information
>gi|307182556|gb|EFN69749.1| 60S ribosomal protein L8 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|70909647|emb|CAJ17248.1| ribosomal protein L8e [Meladema coriacea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
FB|FBgn0261602256 RpL8 "Ribosomal protein L8" [D 0.959 0.929 0.869 6.6e-113
UNIPROTKB|Q3T0S6257 RPL8 "60S ribosomal protein L8 0.959 0.926 0.802 5.8e-105
UNIPROTKB|E2RIA8257 RPL8 "Uncharacterized protein" 0.959 0.926 0.802 5.8e-105
UNIPROTKB|P62917257 RPL8 "60S ribosomal protein L8 0.959 0.926 0.802 5.8e-105
UNIPROTKB|F2Z567257 RPL8 "Uncharacterized protein" 0.959 0.926 0.802 5.8e-105
MGI|MGI:1350927257 Rpl8 "ribosomal protein L8" [M 0.959 0.926 0.802 5.8e-105
RGD|619827257 Rpl8 "ribosomal protein L8" [R 0.959 0.926 0.802 5.8e-105
UNIPROTKB|F1NIX0269 RPL8 "Uncharacterized protein" 0.959 0.884 0.802 7.5e-105
ZFIN|ZDB-GENE-040426-1670257 rpl8 "ribosomal protein L8" [D 0.959 0.926 0.794 2e-104
RGD|1561333257 RGD1561333 "similar to 60S rib 0.959 0.926 0.789 6e-103
FB|FBgn0261602 RpL8 "Ribosomal protein L8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 207/238 (86%), Positives = 225/238 (94%)

Query:     1 MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
             MGRVIRAQRKGAGSVF++H K RKGA KLRSLDFAER GY++GVV+DIIHDPGRGAPLAV
Sbjct:     1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query:    61 VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKT 120
             VHFR+PY++K  KELFIAPEGM+TGQFVYCG+KATLQIGNVMP+  MPEGTI+CNLEEKT
Sbjct:    61 VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query:   121 GDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPIL 180
             GDRGRLAR SGNYATVIAHN DTK+TRVKLPSGAKKV+PSANRAMVGIVAGGGRIDKPIL
Sbjct:   121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPIL 180

Query:   181 KAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVL 238
             KAGRA++KYK KRN WPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV ++
Sbjct:   181 KAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
GO:0006412 "translation" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0005840 "ribosome" evidence=IDA
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0008286 "insulin receptor signaling pathway" evidence=IGI
GO:0048749 "compound eye development" evidence=IMP
GO:0008361 "regulation of cell size" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|Q3T0S6 RPL8 "60S ribosomal protein L8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIA8 RPL8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62917 RPL8 "60S ribosomal protein L8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z567 RPL8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1350927 Rpl8 "ribosomal protein L8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619827 Rpl8 "ribosomal protein L8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIX0 RPL8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1670 rpl8 "ribosomal protein L8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1561333 RGD1561333 "similar to 60S ribosomal protein L8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C5A283RL2_THEGJNo assigned EC number0.46610.91120.9456yesN/A
Q9UXA5RL2_SULSONo assigned EC number0.46610.89910.9369yesN/A
P62918RL8_MOUSENo assigned EC number0.80250.95960.9260yesN/A
P62919RL8_RATNo assigned EC number0.80250.95960.9260yesN/A
Q9YFN1RL2_AERPENo assigned EC number0.46610.90320.9411yesN/A
P13023RL8_DICDINo assigned EC number0.69450.95960.9333yesN/A
P41116RL8_XENLANo assigned EC number0.78990.95960.9260N/AN/A
Q95V39RL8_SPOFRNo assigned EC number0.89070.95960.9260N/AN/A
P62917RL8_HUMANNo assigned EC number0.80250.95960.9260yesN/A
Q2NFV9RL2_METSTNo assigned EC number0.46610.91930.9460yesN/A
P0CX46RL2B_YEASTNo assigned EC number0.67640.95960.9370yesN/A
P0CX45RL2A_YEASTNo assigned EC number0.67640.95960.9370yesN/A
Q6PBF0RL8_XENTRNo assigned EC number0.79410.95960.9260yesN/A
A9A9B5RL2_METM6No assigned EC number0.50840.91930.95yesN/A
Q8U001RL2_PYRFUNo assigned EC number0.46180.91120.9456yesN/A
P41569RL8_AEDALNo assigned EC number0.85710.95960.9118N/AN/A
Q5JDH2RL2_PYRKONo assigned EC number0.46180.91120.9456yesN/A
Q9V1T8RL2_PYRABNo assigned EC number0.46610.91120.9456yesN/A
P46286RL81_ARATHNo assigned EC number0.72260.95960.9224yesN/A
Q6LX08RL2_METMPNo assigned EC number0.50840.91930.95yesN/A
Q9U9L2RL8_ANOGANo assigned EC number0.85290.95960.9118yesN/A
A5UL86RL2_METS3No assigned EC number0.44350.93140.9585yesN/A
Q75AP7RL2_ASHGONo assigned EC number0.66380.95960.9370yesN/A
A6UQJ3RL2_METVSNo assigned EC number0.50420.91930.95yesN/A
P0DJ52RL8_TETTSNo assigned EC number0.63860.95560.8977N/AN/A
Q6P0V6RL8_DANRENo assigned EC number0.79410.95960.9260yesN/A
A6VHD5RL2_METM7No assigned EC number0.50840.91930.95yesN/A
P29766RL8_SOLLCNo assigned EC number0.71000.95960.9153N/AN/A
Q5R7Y8RL8_PONABNo assigned EC number0.78130.99590.9610yesN/A
B1L707RL2_KORCONo assigned EC number0.43640.90720.9183yesN/A
A4FVX9RL2_METM5No assigned EC number0.50840.91930.95yesN/A
Q3T0S6RL8_BOVINNo assigned EC number0.80250.95960.9260yesN/A
O26113RL2_METTHNo assigned EC number0.45160.96770.9958yesN/A
A6UV65RL2_META3No assigned EC number0.47030.91930.95yesN/A
Q42064RL83_ARATHNo assigned EC number0.71420.95960.9224yesN/A
Q6RYS3RL8_MAMBRNo assigned EC number0.89070.95960.9260N/AN/A
O59421RL2_PYRHONo assigned EC number0.45760.91120.9456yesN/A
Q9V3G1RL8_DROMENo assigned EC number0.86970.95960.9296yesN/A
P08093RL2_SCHPONo assigned EC number0.68900.95560.9367yesN/A
B8D5W9RL2_DESK1No assigned EC number0.46830.90320.9372yesN/A
A0B9W7RL2_METTPNo assigned EC number0.44530.91930.9661yesN/A
P54017RL2_METJANo assigned EC number0.47050.91530.9380yesN/A
Q9XVF7RL8_CAEELNo assigned EC number0.73520.95960.9153yesN/A
Q3IMY5RL2_NATPDNo assigned EC number0.45330.90720.9259yesN/A
P21479RL2_METVANo assigned EC number0.50420.91930.9620yesN/A
A3DNA7RL2_STAMFNo assigned EC number0.46610.90720.9414yesN/A
P25998RL8_TOBACNo assigned EC number0.69320.95960.9153N/AN/A
Q4PSL7RL82_ARATHNo assigned EC number0.72450.94750.9038noN/A
Q6FPN7RL2_CANGANo assigned EC number0.68480.95960.9370yesN/A
Q90YW1RL8_ICTPUNo assigned EC number0.78570.95960.9260N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
PTZ00180260 PTZ00180, PTZ00180, 60S ribosomal protein L8; Prov 1e-149
PRK09612238 PRK09612, rpl2p, 50S ribosomal protein L2P; Valida 1e-92
COG0090275 COG0090, RplB, Ribosomal protein L2 [Translation, 9e-84
pfam03947130 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, 8e-48
TIGR01171273 TIGR01171, rplB_bact, ribosomal protein L2, bacter 3e-32
CHL00052273 CHL00052, rpl2, ribosomal protein L2 2e-30
PRK09374276 PRK09374, rplB, 50S ribosomal protein L2; Validate 4e-30
PTZ00031317 PTZ00031, PTZ00031, ribosomal protein L2; Provisio 9e-24
pfam0018177 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RN 3e-16
>gnl|CDD|173464 PTZ00180, PTZ00180, 60S ribosomal protein L8; Provisional Back     alignment and domain information 
 Score =  416 bits (1070), Expect = e-149
 Identities = 170/235 (72%), Positives = 196/235 (83%)

Query: 1   MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
           MGRVIRAQRKG GSVF++H   R G  KLR LD+AERHGY++GVV+DI HDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGNGSVFKAHGHKRLGPAKLRILDYAERHGYIRGVVKDIEHDPGRGAPLAR 60

Query: 61  VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKT 120
           V FR+PYK+K  KEL +APEGMYTGQ+VYCG KA L IGNV+P+G +PEGTIVCN+EEK 
Sbjct: 61  VEFRDPYKYKRVKELMVAPEGMYTGQYVYCGAKAPLAIGNVLPLGQIPEGTIVCNVEEKP 120

Query: 121 GDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPIL 180
           GDRG LARASG YAT+I H+ D  +TR++LPSG KK + S +RAM+GIVAGGGRIDKP+L
Sbjct: 121 GDRGTLARASGCYATIIGHSDDGGKTRIRLPSGQKKTVSSLSRAMIGIVAGGGRIDKPVL 180

Query: 181 KAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 235
           KAG A +KY+ KRNCWPKVRGVAMNPVEHPHGGGNHQHIG  STV R    G+KV
Sbjct: 181 KAGNAFHKYRGKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVSRHAPPGQKV 235

Length = 260
>gnl|CDD|236589 PRK09612, rpl2p, 50S ribosomal protein L2P; Validated Back     alignment and domain information
>gnl|CDD|223168 COG0090, RplB, Ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|202823 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal domain Back     alignment and domain information
>gnl|CDD|162234 TIGR01171, rplB_bact, ribosomal protein L2, bacterial/organellar Back     alignment and domain information
>gnl|CDD|176993 CHL00052, rpl2, ribosomal protein L2 Back     alignment and domain information
>gnl|CDD|236488 PRK09374, rplB, 50S ribosomal protein L2; Validated Back     alignment and domain information
>gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional Back     alignment and domain information
>gnl|CDD|109247 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
PTZ00180260 60S ribosomal protein L8; Provisional 100.0
PRK09612238 rpl2p 50S ribosomal protein L2P; Validated 100.0
COG0090275 RplB Ribosomal protein L2 [Translation, ribosomal 100.0
CHL00052273 rpl2 ribosomal protein L2 100.0
TIGR01171273 rplB_bact ribosomal protein L2, bacterial/organell 100.0
PRK09374276 rplB 50S ribosomal protein L2; Validated 100.0
PTZ00031317 ribosomal protein L2; Provisional 100.0
KOG2309|consensus248 100.0
KOG0438|consensus312 100.0
PF03947130 Ribosomal_L2_C: Ribosomal Proteins L2, C-terminal 100.0
PF0018177 Ribosomal_L2: Ribosomal Proteins L2, RNA binding d 99.94
PF039918 Prion_octapep: Copper binding octapeptide repeat; 86.69
KOG0438|consensus312 85.37
>PTZ00180 60S ribosomal protein L8; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.3e-105  Score=716.63  Aligned_cols=247  Identities=70%  Similarity=1.188  Sum_probs=239.6

Q ss_pred             CCccccccccCCCCcceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccC
Q psy13959          1 MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPE   80 (248)
Q Consensus         1 mgk~~~~qr~Grg~~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~e   80 (248)
                      |||+|++||+|||++||+++|++.+..+||.|||+|+..+++++|++|||||||||+||||+|+|++.|+++++||||||
T Consensus         1 MGk~~~~qrrGrgs~~r~~~~~~~~~~~yR~iDf~r~~~~~~g~V~~IeyDPnRsA~IAlv~~~d~~~~~g~~~YIlAp~   80 (260)
T PTZ00180          1 MGRVIRAQRKGNGSVFKAHGHKRLGPAKLRILDYAERHGYIRGVVKDIEHDPGRGAPLARVEFRDPYKYKRVKELMVAPE   80 (260)
T ss_pred             CCcccchhccCCCCcccCccccccCCccccccccccccCCcCEEEEEEEECCCCCceEEEEEecCCccccCceEEEEeeC
Confidence            99999999999999999999999999999999999987778999999999999999999999999876666789999999


Q ss_pred             CCCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcC
Q psy13959         81 GMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPS  160 (248)
Q Consensus        81 g~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~  160 (248)
                      +|++||+|+++.++++++||+|||.+||+||.|||||+.||+||+|||||||||+|+++++++++++|||||||+++|++
T Consensus        81 gl~vGd~I~~g~~a~i~~GN~lpL~~IP~GT~IhNIE~~pG~GgklaRSAGt~A~ii~k~k~~~~~~vkLPSGe~r~v~~  160 (260)
T PTZ00180         81 GMYTGQYVYCGAKAPLAIGNVLPLGQIPEGTIVCNVEEKPGDRGTLARASGCYATIIGHSDDGGKTRIRLPSGQKKTVSS  160 (260)
T ss_pred             CCCCCCEEEeCCCCCCCCcCccCHhhCCCCCeEEEEeccCCCCceEEEecCCeEEEEEEcccCCEEEEECCCCCeEeECC
Confidence            99999999999999999999999999999999999999999999999999999999998766889999999999999999


Q ss_pred             CCceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeeee
Q psy13959        161 ANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLL  240 (248)
Q Consensus       161 ~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~~  240 (248)
                      +|+||||+|||.++.+++|+|||++||++++.+++||+|||||||||||||||||||++|+||||||+||||||||+|||
T Consensus       161 ~c~ATIG~Vsn~~~~~k~l~KAG~~~~~~~a~~~rwP~VRGVAMNPvDHPHGGGegk~~Gr~~tvsr~appg~kvg~iaa  240 (260)
T PTZ00180        161 LSRAMIGIVAGGGRIDKPVLKAGNAFHKYRGKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVSRHAPPGQKVGLIAA  240 (260)
T ss_pred             CCeEEEEEccCCcchheeeccccchhhhhhCcCCCCCccccEeeCCccCCcCCCCCCCCCCCCCcCCCCCCcceeeeeec
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             eeecccc
Q psy13959        241 YIQGSSR  247 (248)
Q Consensus       241 ~rtg~~~  247 (248)
                      |||||++
T Consensus       241 rrtg~~~  247 (260)
T PTZ00180        241 RRTGLLR  247 (260)
T ss_pred             ccccccc
Confidence            9999964

>PRK09612 rpl2p 50S ribosomal protein L2P; Validated Back     alignment and domain information
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00052 rpl2 ribosomal protein L2 Back     alignment and domain information
>TIGR01171 rplB_bact ribosomal protein L2, bacterial/organellar Back     alignment and domain information
>PRK09374 rplB 50S ribosomal protein L2; Validated Back     alignment and domain information
>PTZ00031 ribosomal protein L2; Provisional Back     alignment and domain information
>KOG2309|consensus Back     alignment and domain information
>KOG0438|consensus Back     alignment and domain information
>PF03947 Ribosomal_L2_C: Ribosomal Proteins L2, C-terminal domain; InterPro: IPR022669 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00181 Ribosomal_L2: Ribosomal Proteins L2, RNA binding domain; InterPro: IPR022666 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS) Back     alignment and domain information
>KOG0438|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
2zkr_a257 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-105
3izr_B261 Localization Of The Large Subunit Ribosomal Protein 1e-101
3izs_B254 Localization Of The Large Subunit Ribosomal Protein 5e-93
1s1i_B253 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-92
3jyw_B243 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-92
4a17_A264 T.Thermophila 60s Ribosomal Subunit In Complex With 4e-88
3zf7_e260 High-resolution Cryo-electron Microscopy Structure 1e-87
3j21_B239 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-50
2otl_A239 Girodazole Bound To The Large Subunit Of Haloarcula 9e-44
3g4s_A237 Co-Crystal Structure Of Tiamulin Bound To The Large 9e-44
1s72_A240 Refined Crystal Structure Of The Haloarcula Marismo 9e-44
3ow2_A237 Crystal Structure Of Enhanced Macrolide Bound To 50 3e-43
1ffk_A239 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-43
1ml5_d178 Crystal Structure Of The Ribosome At 5.5 A Resoluti 1e-29
2b66_D173 50s Ribosomal Subunit From A Crystal Structure Of R 1e-26
1p85_A272 Real Space Refined Coordinates Of The 50s Subunit F 5e-23
2aw4_C273 Crystal Structure Of The Bacterial Ribosome From Es 5e-23
3fik_C271 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 6e-23
3e1b_N270 Structure Of The 50s Subunit Of E. Coli Ribosome In 6e-23
2j28_C267 Model Of E. Coli Srp Bound To 70s Rncs Length = 267 6e-23
2gya_A227 Structure Of The 50s Subunit Of A Pre-Translocation 7e-23
3bbo_E269 Homology Model For The Spinach Chloroplast 50s Subu 4e-22
2j01_D276 Structure Of The Thermus Thermophilus 70s Ribosome 2e-19
3mrz_C275 Recognition Of The Amber Stop Codon By Release Fact 2e-19
3fin_D272 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-19
3pyo_C271 Crystal Structure Of A Complex Containing Domain 3 2e-19
1nwx_A274 Complex Of The Large Ribosomal Subunit From Deinoco 3e-16
1nkw_A275 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-16
1pnu_A270 Crystal Structure Of A Streptomycin Dependent Ribos 4e-16
1rl2_A137 Ribosomal Protein L2 Rna-Binding Domain From Bacill 4e-13
487d_I135 Seven Ribosomal Proteins Fitted To A Cryo-Electron 5e-13
>pdb|2ZKR|AA Chain a, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/238 (80%), Positives = 217/238 (91%)
Query: 1   MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
           MGRVIR QRKGAGSVFR+H KHRKGA +LR++DFAERHGY+KG+V+DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60
Query: 61  VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKT 120
           V FR+PY+FK   ELFIA EG++TGQFVYCGKKA L IGNV+PVG MPEGTIVC LEEK 
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 120
Query: 121 GDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPIL 180
           GDRG+LARASGNYATVI+HNP+TK+TRVKLPSG+KKVI SANRA+VG+VAGGGRIDKPIL
Sbjct: 121 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 180
Query: 181 KAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVL 238
           KAGRA++KYKAKRNCWP+VRGVAMNPVEHP GGGNHQHIGK ST++R   AGRKV ++
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238
>pdb|3IZR|B Chain B, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 261 Back     alignment and structure
>pdb|3IZS|B Chain B, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 254 Back     alignment and structure
>pdb|1S1I|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 253 Back     alignment and structure
>pdb|3JYW|B Chain B, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 243 Back     alignment and structure
>pdb|4A17|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 264 Back     alignment and structure
>pdb|3ZF7|EE Chain e, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260 Back     alignment and structure
>pdb|3J21|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 239 Back     alignment and structure
>pdb|2OTL|A Chain A, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui Length = 239 Back     alignment and structure
>pdb|3G4S|A Chain A, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 237 Back     alignment and structure
>pdb|1S72|A Chain A, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 240 Back     alignment and structure
>pdb|3OW2|A Chain A, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 237 Back     alignment and structure
>pdb|1FFK|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 239 Back     alignment and structure
>pdb|1ML5|DD Chain d, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 178 Back     alignment and structure
>pdb|2B66|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400 Length = 173 Back     alignment and structure
>pdb|1P85|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 272 Back     alignment and structure
>pdb|2AW4|C Chain C, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 273 Back     alignment and structure
>pdb|3FIK|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 271 Back     alignment and structure
>pdb|3E1B|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 270 Back     alignment and structure
>pdb|2J28|C Chain C, Model Of E. Coli Srp Bound To 70s Rncs Length = 267 Back     alignment and structure
>pdb|2GYA|A Chain A, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 227 Back     alignment and structure
>pdb|3BBO|E Chain E, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 269 Back     alignment and structure
>pdb|2J01|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 276 Back     alignment and structure
>pdb|3MRZ|C Chain C, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 275 Back     alignment and structure
>pdb|3FIN|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 272 Back     alignment and structure
>pdb|3PYO|C Chain C, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 271 Back     alignment and structure
>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 274 Back     alignment and structure
>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 275 Back     alignment and structure
>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 270 Back     alignment and structure
>pdb|1RL2|A Chain A, Ribosomal Protein L2 Rna-Binding Domain From Bacillus Stearothermophilus Length = 137 Back     alignment and structure
>pdb|487D|I Chain I, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 135 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
3iz5_B261 60S ribosomal protein L2 (L2P); eukaryotic ribosom 1e-131
3jyw_B243 60S ribosomal protein L2; eukaryotic ribosome, RAC 1e-130
4a17_A264 RPL8; eukaryotic ribosome, ribosome, eukaryotic in 1e-120
1vq8_A240 50S ribosomal protein L2P; ribosome 50S, protein-p 1e-106
1giy_D178 50S ribosomal protein L2; ribosome assembly, prote 7e-35
3bbo_E269 Ribosomal protein L2; large ribosomal subunit, spi 1e-32
3r8s_C271 50S ribosomal protein L2; protein biosynthesis, RN 2e-32
3v2d_D276 50S ribosomal protein L2; ribosome associated inhi 3e-31
1rl2_A137 Protein (ribosomal protein L2); RNA-binding domain 1e-19
2ftc_B136 Mitochondrial ribosomal protein L2; mitochondrial 1e-16
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 1s1i_B Length = 243 Back     alignment and structure
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A Length = 264 Back     alignment and structure
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Length = 240 Back     alignment and structure
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 269 Back     alignment and structure
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C ... Length = 271 Back     alignment and structure
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ... Length = 276 Back     alignment and structure
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Length = 137 Back     alignment and structure
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B Length = 136 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
3iz5_B261 60S ribosomal protein L2 (L2P); eukaryotic ribosom 100.0
4a17_A264 RPL8; eukaryotic ribosome, ribosome, eukaryotic in 100.0
3jyw_B243 60S ribosomal protein L2; eukaryotic ribosome, RAC 100.0
3j21_B239 50S ribosomal protein L2P; archaea, archaeal, KINK 100.0
1vq8_A240 50S ribosomal protein L2P; ribosome 50S, protein-p 100.0
3v2d_D276 50S ribosomal protein L2; ribosome associated inhi 100.0
3r8s_C271 50S ribosomal protein L2; protein biosynthesis, RN 100.0
3bbo_E269 Ribosomal protein L2; large ribosomal subunit, spi 100.0
1giy_D178 50S ribosomal protein L2; ribosome assembly, prote 100.0
1rl2_A137 Protein (ribosomal protein L2); RNA-binding domain 100.0
2ftc_B136 Mitochondrial ribosomal protein L2; mitochondrial 100.0
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A Back     alignment and structure
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B Back     alignment and structure
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Back     alignment and structure
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ... Back     alignment and structure
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ... Back     alignment and structure
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Back     alignment and structure
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d1vqoa1147 b.34.5.3 (A:91-237) C-terminal domain of ribosomal 1e-49
d2j01d1147 b.34.5.3 (D:127-273) C-terminal domain of ribosoma 2e-31
d2qamc1145 b.34.5.3 (C:125-269) C-terminal domain of ribosoma 2e-30
d1vqoa290 b.40.4.5 (A:1-90) N-terminal domain of ribosomal p 1e-21
d1rl2a170 b.34.5.3 (A:126-195) C-terminal domain of ribosoma 1e-18
d1rl2a266 b.40.4.5 (A:60-125) N-terminal domain of ribosomal 9e-10
d2qamc264 b.40.4.5 (C:61-124) N-terminal domain of ribosomal 5e-09
d2zjra295 b.40.4.5 (A:33-127) N-terminal domain of ribosomal 2e-05
d2j01d2125 b.40.4.5 (D:2-126) N-terminal domain of ribosomal 9e-05
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 147 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  158 bits (400), Expect = 1e-49
 Identities = 71/137 (51%), Positives = 87/137 (63%), Gaps = 2/137 (1%)

Query: 99  GNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVI 158
           GN +P+  +PEG  VCN+E   GD G+ ARASG  A ++ H  D     VKLPSG  K +
Sbjct: 1   GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRL 58

Query: 159 PSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
               RA +G+VAGGGR DKP +KAG  H+K KA+   WP VRGVAMN V+HP GGG  QH
Sbjct: 59  DPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQH 118

Query: 219 IGKASTVKRGTSAGRKV 235
            GK  ++ R    GRKV
Sbjct: 119 PGKPKSISRNAPPGRKV 135
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 147 Back     information, alignment and structure
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 90 Back     information, alignment and structure
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 70 Back     information, alignment and structure
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 66 Back     information, alignment and structure
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 64 Back     information, alignment and structure
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]} Length = 95 Back     information, alignment and structure
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d1vqoa1147 C-terminal domain of ribosomal protein L2 {Archaeo 100.0
d2j01d1147 C-terminal domain of ribosomal protein L2 {Thermus 100.0
d2qamc1145 C-terminal domain of ribosomal protein L2 {Escheri 100.0
d1rl2a170 C-terminal domain of ribosomal protein L2 {Bacillu 99.97
d2zjra295 N-terminal domain of ribosomal protein L2 {Deinoco 99.97
d2j01d2125 N-terminal domain of ribosomal protein L2 {Thermus 99.96
d1vqoa290 N-terminal domain of ribosomal protein L2 {Archaeo 99.94
d1rl2a266 N-terminal domain of ribosomal protein L2 {Bacillu 99.93
d2qamc264 N-terminal domain of ribosomal protein L2 {Escheri 99.91
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.9e-68  Score=441.03  Aligned_cols=146  Identities=49%  Similarity=0.842  Sum_probs=143.1

Q ss_pred             CCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeEEeeecCCccccc
Q psy13959         99 GNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKP  178 (248)
Q Consensus        99 Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~  178 (248)
                      ||+|||.+||+||+|||||+.||+|++|||||||||+|++++  +++++|||||||+++|+++|+||||+|||.+|.+++
T Consensus         1 Gn~lpL~~IP~Gt~IhNIE~~pg~ggkl~RsAGt~A~ii~k~--~~~~~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~~   78 (147)
T d1vqoa1           1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHD--RNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKP   78 (147)
T ss_dssp             TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECC--SSCEEEECTTSCEEEECTTCEEEESCBSSTTGGGSC
T ss_pred             CCccchhhCCCCCEEEEEEecCCCCceEEEecCceEEEEEec--cceEEEEecCCceEEEChhcceeeeeccCccchhhh
Confidence            899999999999999999999999999999999999999995  679999999999999999999999999999999999


Q ss_pred             eeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeeeeeeeccc
Q psy13959        179 ILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLYIQGSS  246 (248)
Q Consensus       179 lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~~~rtg~~  246 (248)
                      |+|||+++|+++.+.++||+||||||||||||||||+|||+++|++++|++||||||++|++|||||+
T Consensus        79 ~~KAG~~~~~~r~~~~r~P~VRGvaMNpvDHPhGGG~~~~~~~p~~~~~~~~~g~k~~~i~~rrtgr~  146 (147)
T d1vqoa1          79 FVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRG  146 (147)
T ss_dssp             CCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEETCSCCSSC
T ss_pred             hhhhhhhhhhhhhcCCcCCcccccccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCeecceeeccCCCC
Confidence            99999999999999899999999999999999999999999999999999999999999999999985
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure