Psyllid ID: psy13994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccccEccccHHHHHHHHccccccccccHccccEccccHHHHHHHHcc
Coil and Loop (DISEMBL)
VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMlrhrdvcnkpyhrkSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Flexible Loop (DISEMBL)
vcnkqyhrksvliahlqshegvKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Low Complexity Region (SEG)
VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Disordered region (IsUnstruct)
********KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM****
Disordered Region (DISOPRED)
VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR**
Disordered Region (DISEMBL)
********KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Disordered Region (DISPRO)
*CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH*L***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
P13360	604	Protein glass OS=Drosophi	yes	N/A	0.979	0.157	0.372	3e-13
Q24732	598	Protein glass OS=Drosophi	N/A	N/A	0.979	0.158	0.372	4e-13
P41696	914	Asparagine-rich zinc fing	yes	N/A	0.969	0.102	0.349	2e-12
A6NJL1	495	Zinc finger and SCAN doma	yes	N/A	0.989	0.193	0.388	4e-12
Q5DWN0	422	Zinc finger protein Gfi-1	yes	N/A	0.948	0.218	0.353	1e-11
Q99684	422	Zinc finger protein Gfi-1	no	N/A	0.948	0.218	0.353	1e-11
Q07120	423	Zinc finger protein Gfi-1	yes	N/A	0.948	0.217	0.353	1e-11
P70338	423	Zinc finger protein Gfi-1	yes	N/A	0.948	0.217	0.353	2e-11
P17025	639	Zinc finger protein 182 O	no	N/A	0.989	0.150	0.359	5e-11
O42409	337	Zinc finger protein Gfi-1	no	N/A	0.948	0.272	0.353	9e-11

>sp|P13360|GLAS_DROME Protein glass OS=Drosophila melanogaster GN=gl PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + + L AH+++H G K F C  C  RFSQ  S   HM  H          C K 
Sbjct: 470 CNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKS 529

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C  RFSQ  +   HM  H
Sbjct: 530 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 571

Transcription factor required for gene expression specific to photoreceptor cells.
Drosophila melanogaster (taxid: 7227)

>sp|Q24732|GLAS_DROVI Protein glass OS=Drosophila virilis GN=gl PE=3 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + + L AH+++H G K F C  C  RFSQ  S   HM  H          C K 
Sbjct: 460 CNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKS 519

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C  RFSQ  +   HM  H
Sbjct: 520 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 561

Transcription factor required for gene expression specific to photoreceptor cells.

Drosophila virilis (taxid: 7244)

>sp|P41696|AZF1_YEAST Asparagine-rich zinc finger protein AZF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AZF1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C++ + + + L  H++SH G K F C+YC  RF+Q  + R H   H        D+C+K 
Sbjct: 598 CHRLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKK 657

Query: 55  YHRKSVLIAHLQSHEGVKKFGC--EYCSARFSQKISCRVHMLR 95
           + RK  L AHL +H+ +K F C  E C+  F+Q  + + H  R
Sbjct: 658 FSRKGNLAAHLVTHQKLKPFVCKLENCNKTFTQLGNMKAHQNR 700

Potential transcription factor; suppressor for a mitochondrial RNA polymerase mutant.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6NJL1|ZSA5B_HUMAN Zinc finger and SCAN domain-containing protein 5B OS=Homo sapiens GN=ZSCAN5B PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           VCNK +   S L  H +SH G + F C+ C  RF Q    RVH   H        DVC K
Sbjct: 359 VCNKSFKYFSQLSIHRRSHTGDRPFQCDLCRKRFLQPSDLRVHQRVHTGERPYMCDVCQK 418

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            +  +S L  H + H G + F C+YCS  FS K +  VH   H
Sbjct: 419 RFAHESTLQGHKRIHTGERPFKCKYCSKVFSHKGNLNVHQRTH 461

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5DWN0|GFI1_CANFA Zinc finger protein Gfi-1 OS=Canis familiaris GN=GFI1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNK 53
           +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 316 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 375

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
            + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct: 376 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Canis familiaris (taxid: 9615)

>sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNK 53
           +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 316 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 375

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
            + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct: 376 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Homo sapiens (taxid: 9606)

>sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNK 53
           +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 317 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 376

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
            + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct: 377 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 415

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter region. Implicated in the maintenance of inner ear hair cells.

Rattus norvegicus (taxid: 10116)

>sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNK 53
           +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 317 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 376

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
            + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct: 377 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 415

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Mus musculus (taxid: 10090)

>sp|P17025|ZN182_HUMAN Zinc finger protein 182 OS=Homo sapiens GN=ZNF182 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
            C K + +KS LI H ++H G K FGC  C   FSQK    +H+  H          C K
Sbjct: 238 ACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGK 297

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            +  KS +I H ++H G K + C  C   F+QK +  VH   H
Sbjct: 298 AFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTH 340

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|O42409|GFI1B_CHICK Zinc finger protein Gfi-1b OS=Gallus gallus GN=GFI1B PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 231 MCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGK 290

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
            + + S LI H + H G K F CE C+  F +K+  R H
Sbjct: 291 AFSQSSNLITHSRKHTGFKPFSCELCAKGFQRKVDLRRH 329

Essential transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
348522447	621	PREDICTED: zinc finger protein 845-like	0.989	0.154	0.359	8e-13
427786539	384	Putative zinc finger protein [Rhipicepha	0.989	0.25	0.398	1e-12
241856917	424	zinc finger protein, putative [Ixodes sc	0.989	0.226	0.388	3e-12
390347449	645	PREDICTED: zinc finger protein 84-like [	0.979	0.147	0.421	5e-12
268566567	802	C. briggsae CBR-BLMP-1 protein [Caenorha	0.979	0.118	0.343	8e-12
390351791	459	PREDICTED: zinc finger protein 84-like [	0.979	0.206	0.421	8e-12
195108807	604	GI24263 [Drosophila mojavensis] gi|19391	0.979	0.157	0.372	8e-12
432963774	388	PREDICTED: zinc finger protein 28-like [	0.989	0.247	0.388	8e-12
198451889	592	GA20515, isoform A [Drosophila pseudoobs	0.979	0.160	0.372	9e-12
195145665	592	GL23194 [Drosophila persimilis] gi|19410	0.979	0.160	0.372	9e-12

>gi|348522447|ref|XP_003448736.1| PREDICTED: zinc finger protein 845-like [Oreochromis niloticus]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           VC K++ RK  +  H+++H G + FGC+ C  +F+Q+ + R H+  H        DVC K
Sbjct: 434 VCGKKFSRKMHVKTHMRTHTGERPFGCDVCGEKFAQQGNLRSHLRVHTGEKPFSCDVCGK 493

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            Y ++ VL  H+++H G K FGC++C  +FSQ+   + H+  H
Sbjct: 494 KYRQQGVLRTHMRTHTGEKPFGCKFCGKQFSQQTHLKAHIRIH 536

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427786539|gb|JAA58721.1| Putative zinc finger protein [Rhipicephalus pulchellus]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           VC K++ +K  L  H+ SH G + F CE C   F+QK + + H+  H        +VC K
Sbjct: 42  VCGKRFTQKGNLKTHMNSHTGARPFRCEICGRGFTQKGNMKTHLATHYGEKPYACEVCGK 101

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            +  K  L  H+ +HEGVK F CE C   FSQK+S   HM  H
Sbjct: 102 RFTLKGNLKTHVMAHEGVKPFACEVCHKSFSQKLSLEYHMNSH 144

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241856917|ref|XP_002416074.1| zinc finger protein, putative [Ixodes scapularis] gi|215510288|gb|EEC19741.1| zinc finger protein, putative [Ixodes scapularis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           +C K    K+V   H++SH G K F C  C  RFSQK S   HM  H        +VC K
Sbjct: 291 LCGKHLASKNVHQLHMRSHSGEKPFTCALCGHRFSQKTSLTRHMRSHTGERPFPCEVCGK 350

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            +  K  +  H+++H G K F CE C   FSQK + + HM  H
Sbjct: 351 RFADKERIKIHMRTHTGEKPFACEVCGKTFSQKSTVKRHMSVH 393

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390347449|ref|XP_003726786.1| PREDICTED: zinc finger protein 84-like [Strongylocentrotus purpuratus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNKP 54
           C K + +KSVL  HL++H G K   C +C   FSQK +   H+LRH          CNK 
Sbjct: 126 CKKGFSQKSVLNRHLRTHTGEKPNECSHCKKGFSQKKNLTKHLLRHTGEKPYECCYCNKG 185

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           + RKS L  HL++H G K + C +C+  +SQKIS   H+L H
Sbjct: 186 FSRKSALNLHLRTHTGEKPYECSHCNKWYSQKISLTQHLLTH 227

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|268566567|ref|XP_002639756.1| C. briggsae CBR-BLMP-1 protein [Caenorhabditis briggsae]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + S L  H+++H G + F CE C+  F+Q    + H L H        D+C+K 
Sbjct: 504 CNKTFGQLSNLKVHVRTHTGERPFKCEICTKEFTQLAHLQKHHLVHTGERPHRCDICDKR 563

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C A+F+Q +  R+H   H
Sbjct: 564 FSSTSNLKTHLRLHNGQKPYTCDVCDAKFTQYVHLRLHKRLH 605

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|390351791|ref|XP_003727738.1| PREDICTED: zinc finger protein 84-like [Strongylocentrotus purpuratus]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNKP 54
           C K + +KSVL  HL++H G K   C +C   FSQK +   H+LRH          CNK 
Sbjct: 126 CKKGFSQKSVLNRHLRTHTGEKPNECSHCKKGFSQKKNLTKHLLRHTGEKPYECCYCNKG 185

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           + RKS L  HL++H G K + C +C+  +SQKIS   H+L H
Sbjct: 186 FSRKSALNLHLRTHTGEKPYECSHCNKWYSQKISLTQHLLTH 227

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|195108807|ref|XP_001998984.1| GI24263 [Drosophila mojavensis] gi|193915578|gb|EDW14445.1| GI24263 [Drosophila mojavensis]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + + L AH+++H G K F C  C  RFSQ  S   HM  H          C K 
Sbjct: 477 CNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKS 536

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C  RFSQ  +   HM  H
Sbjct: 537 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 578

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432963774|ref|XP_004086830.1| PREDICTED: zinc finger protein 28-like [Oryzias latipes]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
           +C K+   ++ L  H+  H+G + FGC+ C  RF++K S R HM  H        DVC K
Sbjct: 228 ICGKRARHQNNLKTHMIVHKGERPFGCDVCGKRFNRKTSLRAHMTVHTGEKPYGCDVCGK 287

Query: 54  PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            Y RK+ L  H+  H   K FGCE C  RF++K     HM  H
Sbjct: 288 SYKRKTHLRTHMTVHAEEKPFGCEVCGKRFNRKTHLATHMAVH 330

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198451889|ref|XP_001358547.2| GA20515, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198131689|gb|EAL27688.2| GA20515, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + + L AH+++H G K F C  C  RFSQ  S   HM  H          C K 
Sbjct: 468 CNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKS 527

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C  RFSQ  +   HM  H
Sbjct: 528 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 569

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195145665|ref|XP_002013812.1| GL23194 [Drosophila persimilis] gi|194102755|gb|EDW24798.1| GL23194 [Drosophila persimilis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           CNK + + + L AH+++H G K F C  C  RFSQ  S   HM  H          C K 
Sbjct: 468 CNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKS 527

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           +   S L  HL+ H G K + C+ C  RFSQ  +   HM  H
Sbjct: 528 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 569

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
UNIPROTKB|F1RI74	675	ZNF605 "Uncharacterized protei	0.979	0.140	0.372	2.5e-14
UNIPROTKB|E1BMX9	674	ZNF605 "Uncharacterized protei	0.979	0.140	0.372	3.2e-14
ZFIN|ZDB-GENE-091118-129	334	gfi1b "growth factor independe	0.948	0.275	0.373	5.9e-14
ZFIN|ZDB-GENE-050522-534	385	gfi1aa "growth factor independ	0.948	0.238	0.353	7.4e-14
UNIPROTKB|F1S4G0	374	GFI1 "Uncharacterized protein"	0.948	0.245	0.353	8.7e-14
ZFIN|ZDB-GENE-040116-8	396	gfi1ab "growth factor independ	0.948	0.232	0.353	1e-13
UNIPROTKB|F1NC19	402	GFI1 "Uncharacterized protein"	0.948	0.228	0.353	1.1e-13
UNIPROTKB|F1MPJ9	420	GFI1 "Uncharacterized protein"	0.948	0.219	0.353	1.2e-13
UNIPROTKB|Q5DWN0	422	GFI1 "Zinc finger protein Gfi-	0.948	0.218	0.353	1.2e-13
UNIPROTKB|Q99684	422	GFI1 "Zinc finger protein Gfi-	0.948	0.218	0.353	1.2e-13

UNIPROTKB|F1RI74 ZNF605 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 38/102 (37%), Positives = 53/102 (51%)

Query:     2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDV-------CNKP 54
             C K +++KS LI H ++H G K +GC  C   FSQK    +H   H          C K 
Sbjct:   199 CGKVFNKKSQLIIHQRTHTGEKPYGCHDCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKA 258

Query:    55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
             + RKS+LI H ++H G K +GC  C   FS+K   + H + H
Sbjct:   259 FSRKSLLILHQRTHTGEKPYGCSECGKAFSRKSQLKRHQITH 300

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1BMX9 ZNF605 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 38/102 (37%), Positives = 53/102 (51%)

Query:     2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDV-------CNKP 54
             C K +++KS LI H ++H G K +GC  C   FSQK    +H   H          C K 
Sbjct:   207 CGKVFNKKSQLIIHQRTHTGEKPYGCRDCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKA 266

Query:    55 YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
             + RKS+LI H ++H G K +GC  C   FS+K   + H + H
Sbjct:   267 FSRKSLLILHQRTHTGEKPYGCSDCGKAFSRKSQLKRHQITH 308

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-091118-129 gfi1b "growth factor independent 1B transcription repressor" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 5.9e-14, P = 5.9e-14
 Identities = 37/99 (37%), Positives = 48/99 (48%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   228 MCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCCK 287

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGCE CS  F +K+  R H
Sbjct:   288 AFSQSSNLITHSRKHTGFKPFGCEICSKGFQRKVDLRRH 326

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IGI;IMP

GO:0030218 "erythrocyte differentiation" evidence=IMP

ZFIN|ZDB-GENE-050522-534 gfi1aa "growth factor independent 1aa" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 35/99 (35%), Positives = 48/99 (48%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C+K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   279 ICDKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 338

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   339 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 377

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0060215 "primitive hemopoiesis" evidence=IMP

GO:0030218 "erythrocyte differentiation" evidence=IMP

UNIPROTKB|F1S4G0 GFI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   268 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 327

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   328 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 366

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040116-8 gfi1ab "growth factor independent 1ab" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   290 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 349

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   350 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 388

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IEP

UNIPROTKB|F1NC19 GFI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   296 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 355

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   356 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 394

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

UNIPROTKB|F1MPJ9 GFI1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   314 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 373

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   374 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 412

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5DWN0 GFI1 "Zinc finger protein Gfi-1" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   316 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 375

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   376 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q99684 GFI1 "Zinc finger protein Gfi-1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 35/99 (35%), Positives = 47/99 (47%)

Query:     1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
             +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct:   316 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 375

Query:    54 PYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
              + + S LI H + H G K FGC+ C   F +K+  R H
Sbjct:   376 AFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH 414

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0016032 "viral reproduction" evidence=TAS

GO:0000083 "regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=TAS

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IDA

GO:0010957 "negative regulation of vitamin D biosynthetic process" evidence=IC

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.93
KOG1074|consensus	958		99.87
KOG1074|consensus	958		99.85
KOG3576|consensus	267		99.71
KOG3623|consensus	1007		99.68
KOG3623|consensus	1007		99.68
KOG3608|consensus	467		99.64
KOG3576|consensus	267		99.59
KOG3608|consensus	467		99.5
KOG3993|consensus	500		99.37
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.32
PHA00733	128	hypothetical protein	99.23
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.23
PHA02768	55	hypothetical protein; Provisional	99.16
PLN03086	567	PRLI-interacting factor K; Provisional	99.04
PHA02768	55	hypothetical protein; Provisional	98.99
PHA00733	128	hypothetical protein	98.89
PLN03086	567	PRLI-interacting factor K; Provisional	98.82
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.79
PHA00616	44	hypothetical protein	98.79
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.73
KOG3993|consensus	500		98.73
PHA00732	79	hypothetical protein	98.68
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.54
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.53
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.52
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.41
smart00355	26	ZnF_C2H2 zinc finger.	98.25
PHA00616	44	hypothetical protein	98.24
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.21
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.17
PHA00732	79	hypothetical protein	98.15
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.92
smart00355	26	ZnF_C2H2 zinc finger.	97.67
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.64
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.61
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.58
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.55
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.54
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.51
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.41
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.25
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.11
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.1
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.99
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.88
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.8
PRK04860	160	hypothetical protein; Provisional	96.67
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.43
PRK04860	160	hypothetical protein; Provisional	96.4
COG5048	467	FOG: Zn-finger [General function prediction only]	96.32
KOG1146|consensus	1406		96.17
COG4049	65	Uncharacterized protein containing archaeal-type C	95.04
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.73
KOG1146|consensus	1406		94.7
KOG4173|consensus	253		94.55
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	94.11
KOG2231|consensus	669		93.49
COG1592	166	Rubrerythrin [Energy production and conversion]	93.38
COG5048	467	FOG: Zn-finger [General function prediction only]	92.82
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	92.24
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.53
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	90.91
PHA00626	59	hypothetical protein	90.31
KOG2893|consensus	341		90.17
KOG4173|consensus	253		90.17
KOG2785|consensus	390		90.15
KOG2893|consensus	341		89.97
KOG0717|consensus	508		87.94
KOG3408|consensus	129		87.88
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	87.29
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	87.22
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	86.12
KOG4167|consensus	907		85.82
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.43
COG5152	259	Uncharacterized conserved protein, contains RING a	84.99
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	84.9
KOG2482|consensus	423		84.29
KOG4167|consensus	907		84.17
KOG2231|consensus	669		84.14
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	83.85
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	83.3
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.21
PF15269	54	zf-C2H2_7: Zinc-finger	83.19
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	83.11
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	82.82
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.67
PF13451	49	zf-trcl: Probable zinc-binding domain	82.57
KOG0978|consensus	698		82.47
KOG4124|consensus	442		81.77
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	80.82

>KOG2462|consensus

Probab=99.96  E-value=2.6e-29  Score=139.64  Aligned_cols=97  Identities=32%  Similarity=0.692  Sum_probs=87.3

Q ss_pred             CcchhccCchHHHHHHhhccC---CCccccccccccccChHHHHHHHHHcc-----cccCccccChHHHHHHHHhccCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEG---VKKFGCEYCSARFSQKISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHEGVK   72 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~---~~~~~C~~C~~~f~~~~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~~~~   72 (97)
                      +||+.|...++|.+|...|..   .+.+.|..||+.+.+...|..|+++|+     +.|||.|.++=.|+.|+++|+|||
T Consensus       135 eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEK  214 (279)
T KOG2462|consen  135 ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEK  214 (279)
T ss_pred             ccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCC
Confidence            488999999999999998853   566889999999999999999999998     689999998888899999999999


Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ||.|+.|+|+|.+.++|+.|+++|+
T Consensus       215 PF~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  215 PFSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             CccCCcccchhcchHHHHHHHHhhc
Confidence            9999999999999999999999984

>KOG2462|consensus

Probab=99.93  E-value=1.6e-26  Score=128.59  Aligned_cols=93  Identities=30%  Similarity=0.517  Sum_probs=88.8

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      .||++|.+...|+.|+++|+  -+.+|.+||+.|.....|+.|+|+|+       +.|+++|...++|+.|+++|.+.|+
T Consensus       166 ~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~  243 (279)
T KOG2462|consen  166 YCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK  243 (279)
T ss_pred             CCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc
Confidence            59999999999999999997  68999999999999999999999999       5799999999999999999999999


Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      |+|..|+|+|+..+.|..|.+.
T Consensus       244 ~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  244 HQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccCcchhhHHHHHHHHHHhhhh
Confidence            9999999999999999999864

>KOG1074|consensus

Probab=99.87  E-value=1.5e-23  Score=130.33  Aligned_cols=48  Identities=44%  Similarity=0.801  Sum_probs=45.5

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+.|.+.+.|..|++.|+|++||.|.+||.+|+++.+|+-|...|+
T Consensus       358 ~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  358 FCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             hhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            489999999999999999999999999999999999999999988776

>KOG1074|consensus

Probab=99.85  E-value=3.4e-22  Score=124.42  Aligned_cols=48  Identities=33%  Similarity=0.708  Sum_probs=46.4

Q ss_pred             ccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         50 VCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        50 ~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|++.|...++|..|+++|+++|||.|.+|+++|....+|+.|+.+|.
T Consensus       884 vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  884 VCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             cchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhcccc
Confidence            699999999999999999999999999999999999999999999884

>KOG3576|consensus

Probab=99.71  E-value=5.1e-18  Score=91.70  Aligned_cols=75  Identities=25%  Similarity=0.580  Sum_probs=68.8

Q ss_pred             CCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHh
Q psy13994         21 GVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM   93 (97)
Q Consensus        21 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   93 (97)
                      +...+.|.+|++.|.....|..|+.-|.       ..||+.|...-.|++|+++|+|.+||+|..|+|+|.+.-.|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            3456899999999999999999999887       369999999999999999999999999999999999999999997


Q ss_pred             hh
Q psy13994         94 LR   95 (97)
Q Consensus        94 ~~   95 (97)
                      +.
T Consensus       194 ~k  195 (267)
T KOG3576|consen  194 KK  195 (267)
T ss_pred             HH
Confidence            64

>KOG3623|consensus

Probab=99.68  E-value=1.1e-17  Score=103.93  Aligned_cols=94  Identities=33%  Similarity=0.618  Sum_probs=82.7

Q ss_pred             cchhccCchHHHHHHhhcc--CCCccccccccccccChHHHHHHHHHcc--------------------cccCccccChH
Q psy13994          2 CNKQYHRKSVLIAHLQSHE--GVKKFGCEYCSARFSQKISCRVHMLRHR--------------------DVCNKPYHRKS   59 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~--~~~~~~C~~C~~~f~~~~~l~~h~~~~~--------------------~~c~~~~~~~~   59 (97)
                      |.+.+.....|+.|+...+  .+..|.|..|..+|.+...|.+|+..|.                    ..|+|+|...-
T Consensus       216 cdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKH  295 (1007)
T KOG3623|consen  216 CDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKH  295 (1007)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHH
Confidence            6667777788899987543  3445999999999999999999999886                    36999999999


Q ss_pred             HHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         60 VLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        60 ~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .|+.|+++|.|||||.|+.|+|.|+....+..|+..
T Consensus       296 HLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  296 HLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             HHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            999999999999999999999999999999888753

>KOG3623|consensus

Probab=99.68  E-value=1.4e-17  Score=103.41  Aligned_cols=70  Identities=33%  Similarity=0.646  Sum_probs=50.9

Q ss_pred             ccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHh
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM   93 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   93 (97)
                      +|.|+.|+++|...+.|.+|-.-|+       ..|.|+|...-.|..|++.|.|||||+|..|+|.|+....+.+|+
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence            4555555555555555555544444       235556666667788999999999999999999999999999997

>KOG3608|consensus

Probab=99.64  E-value=8.9e-16  Score=88.98  Aligned_cols=96  Identities=26%  Similarity=0.481  Sum_probs=79.6

Q ss_pred             cchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc---------------------------------
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR---------------------------------   48 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~---------------------------------   48 (97)
                      |-+.+.+.+.|..|++.|++++-..|+.||.-|..+..|.-|++..+                                 
T Consensus       185 Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~y  264 (467)
T KOG3608|consen  185 CTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCY  264 (467)
T ss_pred             hhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcc
Confidence            56778888889999999988877777777777777777766666554                                 


Q ss_pred             --cccCccccChHHHHHHHHh-ccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         49 --DVCNKPYHRKSVLIAHLQS-HEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        49 --~~c~~~~~~~~~~~~h~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                        +.|.-+....+.|..|++. |..++||+|..|++.|.+.+.|..|...|+
T Consensus       265 kCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS  316 (467)
T KOG3608|consen  265 KCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS  316 (467)
T ss_pred             cccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence              5688888889999999885 778999999999999999999999998874

>KOG3576|consensus

Probab=99.59  E-value=4.8e-16  Score=84.18  Aligned_cols=96  Identities=27%  Similarity=0.584  Sum_probs=75.6

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHh-c----
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQS-H----   68 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~-h----   68 (97)
                      +|++.|.-.-.|.+|+.-|.+.+.+.|..||+.|...-+|+.|+++|+       ..|+++|.....|..|.+. |    
T Consensus       122 vCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~  201 (267)
T KOG3576|consen  122 VCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQH  201 (267)
T ss_pred             hhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchH
Confidence            577888777778888888887778888888888888888888888887       3577888888777777642 2    


Q ss_pred             ------cCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         69 ------EGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        69 ------~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                            ..++.|.|+.||.+-.....+..|++.|
T Consensus       202 ~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~  235 (267)
T KOG3576|consen  202 QYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLH  235 (267)
T ss_pred             HHHHHHhhhheeeecccCCCCCChhHHHHHHHhc
Confidence                  2467899999999988888888888765

>KOG3608|consensus

Probab=99.50  E-value=8.6e-14  Score=80.94  Aligned_cols=95  Identities=23%  Similarity=0.495  Sum_probs=81.8

Q ss_pred             CcchhccCchHHHHHHhh-ccCCCccccccccccccChHHHHHHHHHcc--------cccCccccChHHHHHHHHh-ccC
Q psy13994          1 VCNKQYHRKSVLIAHLQS-HEGVKKFGCEYCSARFSQKISCRVHMLRHR--------DVCNKPYHRKSVLIAHLQS-HEG   70 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~-h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~--------~~c~~~~~~~~~~~~h~~~-h~~   70 (97)
                      +|+..-...+.|..|++. |..++||+|+.|+..+...++|.+|...|.        +.|...+.....+..|.+. |.|
T Consensus       268 lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg  347 (467)
T KOG3608|consen  268 LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG  347 (467)
T ss_pred             ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccC
Confidence            467777788899999885 778999999999999999999999999887        4588888888999999875 445


Q ss_pred             CC--CcccccchhhccChHHHHHHhhh
Q psy13994         71 VK--KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        71 ~~--~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .+  +|.|..|++.|+...+|..|++.
T Consensus       348 ~np~~Y~CH~Cdr~ft~G~~L~~HL~k  374 (467)
T KOG3608|consen  348 NNPILYACHCCDRFFTSGKSLSAHLMK  374 (467)
T ss_pred             CCCCceeeecchhhhccchhHHHHHHH
Confidence            44  69999999999999999999875

>KOG3993|consensus

Probab=99.37  E-value=1.9e-13  Score=80.90  Aligned_cols=96  Identities=20%  Similarity=0.366  Sum_probs=71.4

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcccc--cCcc--------ccChHHHHHHHH--hc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDV--CNKP--------YHRKSVLIAHLQ--SH   68 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~--c~~~--------~~~~~~~~~h~~--~h   68 (97)
                      +|...|.+...|.+|....+....|+|++|++.|+...+|..|+|+|.+.  -.++        .......+.-.+  ..
T Consensus       272 LCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~d  351 (500)
T KOG3993|consen  272 LCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDD  351 (500)
T ss_pred             HHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCc
Confidence            47788999999999999988888999999999999999999999999832  1110        011111100000  01


Q ss_pred             cCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         69 EGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        69 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ..+..|.|..|+|.|.....|+.|+.+|
T Consensus       352 ss~gi~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  352 SSSGIFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             ccCceeecHHhhhhhHHHHHHHHhHHhh
Confidence            2234799999999999999999998876

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.32  E-value=8.9e-13  Score=49.96  Aligned_cols=26  Identities=38%  Similarity=0.869  Sum_probs=23.9

Q ss_pred             HHHHHHHhccCCCCcccccchhhccC
Q psy13994         60 VLIAHLQSHEGVKKFGCEYCSARFSQ   85 (97)
Q Consensus        60 ~~~~h~~~h~~~~~~~C~~C~~~f~~   85 (97)
                      +|..|++.|.+++||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999974

...

>PHA00733 hypothetical protein

Probab=99.23  E-value=1.9e-11  Score=63.14  Aligned_cols=73  Identities=14%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             CCccccccccccccChHHHHHH--HHHcc----------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHH
Q psy13994         22 VKKFGCEYCSARFSQKISCRVH--MLRHR----------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h--~~~~~----------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l   89 (97)
                      .+++.|.+|+..|.....|..+  +..+.          +.|++.|.....|..|++.+  +.+|.|..|++.|.....|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL  115 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST  115 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence            4567888888777777666655  11111          46888888888888888866  3579999999999999999


Q ss_pred             HHHhhhc
Q psy13994         90 RVHMLRH   96 (97)
Q Consensus        90 ~~H~~~h   96 (97)
                      ..|+...
T Consensus       116 ~~H~~~~  122 (128)
T PHA00733        116 LDHVCKK  122 (128)
T ss_pred             HHHHHHh
Confidence            9998763

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.23  E-value=7.6e-12  Score=47.37  Aligned_cols=26  Identities=38%  Similarity=0.869  Sum_probs=23.8

Q ss_pred             HHHHHHhhccCCCccccccccccccC
Q psy13994         11 VLIAHLQSHEGVKKFGCEYCSARFSQ   36 (97)
Q Consensus        11 ~l~~h~~~h~~~~~~~C~~C~~~f~~   36 (97)
                      +|..|+++|++++||.|+.|+++|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999999999999999999863

...

>PHA02768 hypothetical protein; Provisional

Probab=99.16  E-value=1.5e-11  Score=53.85  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             cCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        51 c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      ||+.|...++|..|++.|.  ++|+|..|++.|.+.+.|.
T Consensus        11 CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768         11 CGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             hCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4455555666677777777  6899999999999877663

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.04  E-value=8.4e-10  Score=68.64  Aligned_cols=86  Identities=15%  Similarity=0.372  Sum_probs=57.2

Q ss_pred             cchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccC----------hHHHHHH
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHR----------KSVLIAH   64 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~----------~~~~~~h   64 (97)
                      |++.|. ...|..|+..++  +|+.|+ ||..+ ....|..|+..+.       +.|++.+..          ...|..|
T Consensus       459 Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~H  533 (567)
T PLN03086        459 CGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEH  533 (567)
T ss_pred             CCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHH
Confidence            666664 466778887764  677887 87644 5577777776655       356666642          2357777


Q ss_pred             HHhccCCCCcccccchhhccChHHHHHHhh
Q psy13994         65 LQSHEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        65 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .... |.+++.|..||+.+... .|..|+.
T Consensus       534 E~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        534 ESIC-GSRTAPCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             HHhc-CCcceEccccCCeeeeh-hHHHHHH
Confidence            7764 67788888888777655 5566654

>PHA02768 hypothetical protein; Provisional

Probab=98.99  E-value=2e-10  Score=50.34  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             cchhccCchHHHHHHhhccCCCccccccccccccChH
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKI   38 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~   38 (97)
                      ||+.|...++|..|+++|+  +|+.|..|++.|...+
T Consensus        11 CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s   45 (55)
T PHA02768         11 CGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTG   45 (55)
T ss_pred             hCCeeccHHHHHHHHHhcC--CcccCCcccceecccc
Confidence            5555555555555555554  4555555555554433

>PHA00733 hypothetical protein

Probab=98.89  E-value=4.5e-09  Score=54.38  Aligned_cols=50  Identities=22%  Similarity=0.500  Sum_probs=43.8

Q ss_pred             cCCCccccccccccccChHHHHHHHHHcc-----cccCccccChHHHHHHHHhcc
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHE   69 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~   69 (97)
                      .+++||.|+.||+.|.....|..|++.+.     +.|++.|.....|..|+....
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            45889999999999999999999998542     689999999999999987654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.82  E-value=1.2e-08  Score=63.69  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=58.6

Q ss_pred             CCccccccccccccChHHHHHHHHHcc-----cccCccccChHHHHHHHHhccCCCCcccccchhhccC----------h
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQ----------K   86 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~----------~   86 (97)
                      ++++.|+.|++.|. ...|..|+..++     + |++.+ ....|..|+..|..++++.|..|++.|..          .
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~  527 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRL  527 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhh
Confidence            45678999999996 678999999865     4 88655 56899999999999999999999999852          4


Q ss_pred             HHHHHHhhh
Q psy13994         87 ISCRVHMLR   95 (97)
Q Consensus        87 ~~l~~H~~~   95 (97)
                      +.|..|...
T Consensus       528 s~Lt~HE~~  536 (567)
T PLN03086        528 RGMSEHESI  536 (567)
T ss_pred             hhHHHHHHh
Confidence            578888765

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.79  E-value=2.6e-09  Score=39.17  Aligned_cols=23  Identities=39%  Similarity=0.801  Sum_probs=21.3

Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=98.79  E-value=3.2e-09  Score=44.50  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=23.4

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ||+|+.||+.|.+.++|..|+++|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h   25 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH   25 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc
Confidence            6899999999999999999999874

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.73  E-value=1.4e-09  Score=62.98  Aligned_cols=71  Identities=20%  Similarity=0.368  Sum_probs=50.9

Q ss_pred             CCcccccc--ccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhh
Q psy13994         22 VKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        22 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ++||.|++  |.+++.....|+-|+...+  |.........-..+...-..+|||+|++|+|.|.....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH--~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGH--QNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccc--cCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999976  9999999999999987544  22211111122233334566899999999999999999877754

>KOG3993|consensus

Probab=98.73  E-value=4.9e-09  Score=62.76  Aligned_cols=95  Identities=22%  Similarity=0.379  Sum_probs=68.5

Q ss_pred             CcchhccCchHHHHHHhhccC--------C-------------------------CccccccccccccChHHHHHHHHHc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEG--------V-------------------------KKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~--------~-------------------------~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      +|+++|.-..+|..|.+.|.-        .                         -.|.|.+|++.|.....|..|+.+|
T Consensus       300 EC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlth  379 (500)
T KOG3993|consen  300 ECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTH  379 (500)
T ss_pred             cccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhh
Confidence            699999999999999999831        1                         1378999999999999999999888


Q ss_pred             c-----------------------------------------------------cccCccccChHHHHHHHHhccCCCCc
Q psy13994         48 R-----------------------------------------------------DVCNKPYHRKSVLIAHLQSHEGVKKF   74 (97)
Q Consensus        48 ~-----------------------------------------------------~~c~~~~~~~~~~~~h~~~h~~~~~~   74 (97)
                      +                                                     +.++..+.++..--.+.+.-..+.-|
T Consensus       380 q~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f  459 (500)
T KOG3993|consen  380 QRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGF  459 (500)
T ss_pred             hccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhcc
Confidence            7                                                     12332222222222222222234568


Q ss_pred             ccccchhhccChHHHHHHhhh
Q psy13994         75 GCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        75 ~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .|..|--+|.....|.+|+.+
T Consensus       460 ~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  460 TCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             ccccchHhhhcCcchHhHhhh
Confidence            899999999999999998765

>PHA00732 hypothetical protein

Probab=98.68  E-value=1.5e-08  Score=48.15  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=15.9

Q ss_pred             ccccccccccccChHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      ||.|..||+.|.....|..|++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r   22 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHAR   22 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhh
Confidence            5678888777777777776665

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.54  E-value=4.8e-08  Score=37.11  Aligned_cols=25  Identities=32%  Similarity=0.564  Sum_probs=23.0

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999998873

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.53  E-value=5.3e-08  Score=35.75  Aligned_cols=24  Identities=38%  Similarity=0.728  Sum_probs=20.0

Q ss_pred             cccccchhhccChHHHHHHhhhcC
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.|++|++.|.+...|..|+++|.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999863

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.52  E-value=6.2e-08  Score=47.87  Aligned_cols=70  Identities=23%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             ccccccccccChHHHHHHHHHccccc---CccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         26 GCEYCSARFSQKISCRVHMLRHRDVC---NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        26 ~C~~C~~~f~~~~~l~~h~~~~~~~c---~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|..|+..|.....+..|+...+...   ...+.....+..+.+... ...+.|..|++.|.....|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            47889999999999999987666321   111222233333333222 23689999999999999999999864

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.41  E-value=2.3e-07  Score=33.80  Aligned_cols=22  Identities=36%  Similarity=0.747  Sum_probs=19.6

Q ss_pred             cccccccccccChHHHHHHHHH
Q psy13994         25 FGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00355 ZnF_C2H2 zinc finger

Probab=98.25  E-value=8.3e-07  Score=32.94  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=21.1

Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |.|+.|+++|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57999999999999999999876

>PHA00616 hypothetical protein

Probab=98.24  E-value=6.2e-07  Score=37.66  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             ccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      ||.|..||+.|.....                     +..|++.|++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~---------------------l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKE---------------------VIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHH---------------------HHHHHHHhcCCCccceeE
Confidence            5677777666655554                     555555666666666543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.21  E-value=1.5e-06  Score=31.71  Aligned_cols=23  Identities=39%  Similarity=0.751  Sum_probs=18.5

Q ss_pred             cccccccccccChHHHHHHHHHc
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      |.|++|++.|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57999999999999999998875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.17  E-value=1e-06  Score=33.31  Aligned_cols=25  Identities=32%  Similarity=0.564  Sum_probs=21.6

Q ss_pred             ccccccccccccChHHHHHHHHHcc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ||.|..|++.|.....|..|++.+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6889999999999999999987653

>PHA00732 hypothetical protein

Probab=98.15  E-value=1.6e-06  Score=41.26  Aligned_cols=42  Identities=17%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             CcchhccCchHHHHHHhh-ccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQS-HEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~-h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|++. |.   ++.|+.||+.|.   .+..|..+..
T Consensus         6 ~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          6 ICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            589999999999999984 54   358999999997   4666765544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.92  E-value=5.4e-06  Score=30.69  Aligned_cols=23  Identities=35%  Similarity=0.681  Sum_probs=20.7

Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |.|.+|++.|.....++.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57999999999999999999864

>smart00355 ZnF_C2H2 zinc finger

Probab=97.67  E-value=4.9e-05  Score=27.88  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=18.4

Q ss_pred             cccccccccccChHHHHHHHHHc
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      +.|..|++.|.....+..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46888988888888888887743

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.64  E-value=3.1e-05  Score=28.57  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=19.2

Q ss_pred             cccccccccccChHHHHHHHHH
Q psy13994         25 FGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      |.|.+|+..|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5799999999999999999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.61  E-value=5.4e-05  Score=32.64  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ...+.|-.|++|+..+.+..+|++|+++.
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~   47 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIR   47 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHH
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHH
Confidence            34567889999999999999999999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.58  E-value=1.6e-05  Score=30.01  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      |.|..|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.55  E-value=5.1e-05  Score=27.72  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=17.7

Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+|+.|+.... ...|.+|+++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            68999999888 88999999874

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.54  E-value=0.00029  Score=31.06  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             ccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCC-CCcccccchhhccChHHHHHHhhhc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGV-KKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|.|+.|++ ......|..|...                    .|..+ +.+.|++|...+.  .+|..|+..+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~--------------------~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCED--------------------EHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHh--------------------HCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            367777777 3334445444332                    24333 4688999998655  4888998764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.51  E-value=0.0001  Score=36.27  Aligned_cols=20  Identities=15%  Similarity=0.564  Sum_probs=0.0

Q ss_pred             CcchhccCchHHHHHHhhcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHE   20 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~   20 (97)
                      .|+..|.+...|..|+...+
T Consensus         4 ~C~~~f~~~~~l~~H~~~~H   23 (100)
T PF12756_consen    4 FCDESFSSVDDLLQHMKKKH   23 (100)
T ss_dssp             --------------------
T ss_pred             cccccccccccccccccccc
Confidence            47888888888888886543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.41  E-value=0.00044  Score=30.51  Aligned_cols=44  Identities=27%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             CcchhccCchHHHHHHhh-ccC-CCccccccccccccChHHHHHHHHHc
Q psy13994          1 VCNKQYHRKSVLIAHLQS-HEG-VKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~-h~~-~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      .|++ ..+...|..|... |.. .+.+.|++|...+.  .+|..|+...
T Consensus         7 ~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    7 YCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            4788 4567889999765 444 35699999997644  4777777654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.25  E-value=0.0004  Score=30.02  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=20.1

Q ss_pred             ccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +..+.|..|++|+..+....+|..|+...+
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            345788999999999999999999986543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.11  E-value=0.00012  Score=43.18  Aligned_cols=44  Identities=27%  Similarity=0.532  Sum_probs=36.5

Q ss_pred             cchhccCchHHHHHHhhcc-------------------CCCccccccccccccChHHHHHHHH
Q psy13994          2 CNKQYHRKSVLIAHLQSHE-------------------GVKKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      |++.|.....|+.|+..-+                   .++||+|.+|++.+...+.|+-|+.
T Consensus       357 C~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         357 CNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             chhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            8899999999999986422                   1489999999999999999888754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.10  E-value=9.2e-05  Score=27.88  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=18.8

Q ss_pred             cccccccccccChHHHHHHHHH
Q psy13994         25 FGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      |.|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999888753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.99  E-value=0.00068  Score=24.63  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=16.3

Q ss_pred             cccccccccccChHHHHHHHHHc
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      |.|+.|+.... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            57899998887 88888888764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.88  E-value=0.00078  Score=26.75  Aligned_cols=23  Identities=30%  Similarity=0.723  Sum_probs=20.4

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +|.|..|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.80  E-value=0.0011  Score=24.47  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=16.8

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 56678888765

>PRK04860 hypothetical protein; Provisional

Probab=96.67  E-value=0.0013  Score=35.60  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             ChHHHHHHHHhccCCCCcccccchhhccCh
Q psy13994         57 RKSVLIAHLQSHEGVKKFGCEYCSARFSQK   86 (97)
Q Consensus        57 ~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~   86 (97)
                      ....+..|.+++.++++|.|..|+..|...
T Consensus       127 ~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        127 HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            566788999999999999999999988754

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.43  E-value=0.0027  Score=25.13  Aligned_cols=23  Identities=30%  Similarity=0.723  Sum_probs=19.7

Q ss_pred             ccccccccccccChHHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      +|.|.+|+..|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999988888888764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=96.40  E-value=0.0017  Score=35.09  Aligned_cols=30  Identities=17%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             CchHHHHHHhhccCCCccccccccccccCh
Q psy13994          8 RKSVLIAHLQSHEGVKKFGCEYCSARFSQK   37 (97)
Q Consensus         8 ~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~   37 (97)
                      ....+..|.+++.++++|.|..|+..|...
T Consensus       127 ~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        127 HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            456677888888888888888888877644

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.32  E-value=0.00019  Score=43.63  Aligned_cols=47  Identities=38%  Similarity=0.738  Sum_probs=41.6

Q ss_pred             cchhccCchHHHHHHh--hccCC--Cccccc--cccccccChHHHHHHHHHcc
Q psy13994          2 CNKQYHRKSVLIAHLQ--SHEGV--KKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |...|.....+..|.+  .|.++  +|+.|+  .|++.|.....+..|...+.
T Consensus       295 ~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         295 CNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             ccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            5677888888999999  79999  999999  79999999999999988776

>KOG1146|consensus

Probab=96.17  E-value=0.0012  Score=45.61  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             ccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHh------ccCCCCcccccchhhccChHHHHHH
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQS------HEGVKKFGCEYCSARFSQKISCRVH   92 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~------h~~~~~~~C~~C~~~f~~~~~l~~H   92 (97)
                      +...+.+.|+.|+..+.....|..|++..++.-+..+.  .+.+.|.+.      -.+-++|.|..|..+++...+|.+|
T Consensus       460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c--~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsih  537 (1406)
T KOG1146|consen  460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYC--KAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIH  537 (1406)
T ss_pred             ecccccccCCccchhhhhHHHhhhcccccccccchhHh--HhccccccccccccccCCCCcccceeeeeeeecchHHHHH
Confidence            45567899999999999999999999986633221111  111122211      2334789999999999999999999


Q ss_pred             hhh
Q psy13994         93 MLR   95 (97)
Q Consensus        93 ~~~   95 (97)
                      +..
T Consensus       538 lqS  540 (1406)
T KOG1146|consen  538 LQS  540 (1406)
T ss_pred             HHH
Confidence            864

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.04  E-value=0.015  Score=25.66  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhh
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ..||--++|+-|+..|.....+.+|.-
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhh
Confidence            456777899999999999999888853

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.73  E-value=0.017  Score=22.70  Aligned_cols=10  Identities=30%  Similarity=0.783  Sum_probs=7.9

Q ss_pred             CCcccccchh
Q psy13994         72 KKFGCEYCSA   81 (97)
Q Consensus        72 ~~~~C~~C~~   81 (97)
                      .++.|++|+.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            5788999874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG1146|consensus

Probab=94.70  E-value=0.0067  Score=42.25  Aligned_cols=69  Identities=13%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ..+|.|..|...|...+.+..|++    .|.+.+....-..-+...+.....| |..|...|+....|+.|+++
T Consensus      1282 ~~~~~~~~~~~~~~~~~~l~~~~~----k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1282 THRYLCRQCKMAFDGEAPLTAHQR----KFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             chhHHHHHHHhhhcchhHHHHHHH----HHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHH
Confidence            346778888888888887777763    2333333222222233333434556 99999999999999999985

>KOG4173|consensus

Probab=94.55  E-value=0.036  Score=31.19  Aligned_cols=71  Identities=23%  Similarity=0.525  Sum_probs=51.9

Q ss_pred             cccccc--ccccccChHHHHHHHHHcc----cccCccccChHHHHHHHH----------hccCCCCccc--ccchhhccC
Q psy13994         24 KFGCEY--CSARFSQKISCRVHMLRHR----DVCNKPYHRKSVLIAHLQ----------SHEGVKKFGC--EYCSARFSQ   85 (97)
Q Consensus        24 ~~~C~~--C~~~f~~~~~l~~h~~~~~----~~c~~~~~~~~~~~~h~~----------~h~~~~~~~C--~~C~~~f~~   85 (97)
                      .+.|++  |-+.|........|..+-+    ..|.+.|.+.-.|..|+.          ...|..-|+|  +.|+..|.+
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT  158 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKT  158 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhh
Confidence            366765  7788888888888776544    467788888777777763          2345556888  559999999


Q ss_pred             hHHHHHHhh
Q psy13994         86 KISCRVHML   94 (97)
Q Consensus        86 ~~~l~~H~~   94 (97)
                      ......|+-
T Consensus       159 ~r~RkdH~I  167 (253)
T KOG4173|consen  159 SRDRKDHMI  167 (253)
T ss_pred             hhhhhhHHH
Confidence            988888853

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.11  E-value=0.044  Score=22.93  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=16.3

Q ss_pred             CCCCcccccchhhccCh----HHHHHHhh
Q psy13994         70 GVKKFGCEYCSARFSQK----ISCRVHML   94 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~----~~l~~H~~   94 (97)
                      ++....|..|++.+...    +.|..|++
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            44567899999988874    88999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2231|consensus

Probab=93.49  E-value=0.15  Score=33.78  Aligned_cols=60  Identities=18%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             cChHHHHHHHHHccc---------------ccCccccChHHHHHHHHhccC-CC----CcccccchhhccChHHHHHHhh
Q psy13994         35 SQKISCRVHMLRHRD---------------VCNKPYHRKSVLIAHLQSHEG-VK----KFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        35 ~~~~~l~~h~~~~~~---------------~c~~~~~~~~~~~~h~~~h~~-~~----~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .+...|..|+...+.               .+.+. -....|+.|++.-.- +.    .-.|+.|...|.....|..|++
T Consensus       125 ~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~-Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~  203 (669)
T KOG2231|consen  125 KSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKL-YTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLR  203 (669)
T ss_pred             hHHHHHHHHHHHhhhhhccccccccceeeeeeeeh-ehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhc
Confidence            366778888866552               12222 235566667654221 22    1347888888888888888877


Q ss_pred             h
Q psy13994         95 R   95 (97)
Q Consensus        95 ~   95 (97)
                      .
T Consensus       204 ~  204 (669)
T KOG2231|consen  204 F  204 (669)
T ss_pred             c
Confidence            5

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=93.38  E-value=0.049  Score=29.72  Aligned_cols=13  Identities=38%  Similarity=0.726  Sum_probs=10.2

Q ss_pred             ccCCCCcccccch
Q psy13994         68 HEGVKKFGCEYCS   80 (97)
Q Consensus        68 h~~~~~~~C~~C~   80 (97)
                      +.++.|-+||+||
T Consensus       144 ~~ge~P~~CPiCg  156 (166)
T COG1592         144 HEGEAPEVCPICG  156 (166)
T ss_pred             ccCCCCCcCCCCC
Confidence            3457788999998

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.82  E-value=0.012  Score=35.89  Aligned_cols=47  Identities=38%  Similarity=0.730  Sum_probs=38.8

Q ss_pred             ccCccccChHHHHHHHH--hccCC--CCcccc--cchhhccChHHHHHHhhhc
Q psy13994         50 VCNKPYHRKSVLIAHLQ--SHEGV--KKFGCE--YCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        50 ~c~~~~~~~~~~~~h~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|...|.....+..|.+  .|.++  +++.|+  .|++.|.....+..|..+|
T Consensus       294 ~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH  346 (467)
T ss_pred             cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccc
Confidence            46667777778888888  78888  899998  7999999998888887765

>smart00614 ZnF_BED BED zinc finger

Probab=92.24  E-value=0.094  Score=22.61  Aligned_cols=23  Identities=30%  Similarity=0.764  Sum_probs=18.3

Q ss_pred             cccccchhhccCh-----HHHHHHhh-hc
Q psy13994         74 FGCEYCSARFSQK-----ISCRVHML-RH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~-----~~l~~H~~-~h   96 (97)
                      -.|..|++.++..     +.|.+|++ +|
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h   47 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH   47 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence            4599999988766     68999988 44

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.53  E-value=0.22  Score=25.47  Aligned_cols=73  Identities=15%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcc-------------------cccCccccChHHHHHHHHhccCCCCcccccchhh
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR-------------------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSAR   82 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~-------------------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~   82 (97)
                      +-|..|++||-+......|.+....--                   -.|...|........  ..-.....|+|+.|...
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCCCc
Confidence            457888899888877777764321100                   124444443211000  00112346999999999


Q ss_pred             ccChHHHHHHhhhc
Q psy13994         83 FSQKISCRVHMLRH   96 (97)
Q Consensus        83 f~~~~~l~~H~~~h   96 (97)
                      |-..-+.-.|...|
T Consensus        91 FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        91 FCVDCDVFVHESLH  104 (112)
T ss_pred             cccccchhhhhhcc
Confidence            98877777777665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=90.91  E-value=0.23  Score=18.40  Aligned_cols=19  Identities=16%  Similarity=0.293  Sum_probs=14.8

Q ss_pred             ccccchhhccChHHHHHHhh
Q psy13994         75 GCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        75 ~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .||+|++.+ ....+..|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            599999988 5567778875

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PHA00626 hypothetical protein

Probab=90.31  E-value=0.12  Score=22.89  Aligned_cols=16  Identities=19%  Similarity=0.360  Sum_probs=13.2

Q ss_pred             CCCcccccchhhccCh
Q psy13994         71 VKKFGCEYCSARFSQK   86 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~   86 (97)
                      ...|.|+.||..|+..
T Consensus        21 snrYkCkdCGY~ft~~   36 (59)
T PHA00626         21 SDDYVCCDCGYNDSKD   36 (59)
T ss_pred             CcceEcCCCCCeechh
Confidence            4689999999988753

>KOG2893|consensus

Probab=90.17  E-value=0.086  Score=30.49  Aligned_cols=19  Identities=26%  Similarity=0.534  Sum_probs=9.3

Q ss_pred             cccccccccChHHHHHHHH
Q psy13994         27 CEYCSARFSQKISCRVHML   45 (97)
Q Consensus        27 C~~C~~~f~~~~~l~~h~~   45 (97)
                      |..|.+.|.....|.+|+.
T Consensus        13 cwycnrefddekiliqhqk   31 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK   31 (341)
T ss_pred             eeecccccchhhhhhhhhh
Confidence            5555555554444444443

>KOG4173|consensus

Probab=90.17  E-value=0.31  Score=27.65  Aligned_cols=60  Identities=15%  Similarity=0.362  Sum_probs=41.3

Q ss_pred             hhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------------------cccCccccChHHHHHH
Q psy13994          4 KQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------------------DVCNKPYHRKSVLIAH   64 (97)
Q Consensus         4 ~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------------------~~c~~~~~~~~~~~~h   64 (97)
                      ..|.....+..|...-++   -.|..|.+.|.+...|..|+.-.+                   ..|+..|...-.-..|
T Consensus        89 ~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH  165 (253)
T KOG4173|consen   89 QVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDH  165 (253)
T ss_pred             HHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhH
Confidence            344444444455443333   379999999999999999987665                   3588888887777777


Q ss_pred             HH
Q psy13994         65 LQ   66 (97)
Q Consensus        65 ~~   66 (97)
                      +.
T Consensus       166 ~I  167 (253)
T KOG4173|consen  166 MI  167 (253)
T ss_pred             HH
Confidence            64

>KOG2785|consensus

Probab=90.15  E-value=0.39  Score=29.69  Aligned_cols=71  Identities=18%  Similarity=0.343  Sum_probs=45.3

Q ss_pred             cccccccccccChHHHHHHHHHcc-------------cccCccccChHH-HHH--HHHhccCCCCcccccchhhccChHH
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRHR-------------DVCNKPYHRKSV-LIA--HLQSHEGVKKFGCEYCSARFSQKIS   88 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~~-------------~~c~~~~~~~~~-~~~--h~~~h~~~~~~~C~~C~~~f~~~~~   88 (97)
                      |.|..|...|........|+.+..             +.-...|..... ...  -.....++-++.|..|.+.|.....
T Consensus         4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a   83 (390)
T KOG2785|consen    4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA   83 (390)
T ss_pred             ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence            678999999988888888876532             111112221111 000  1112344567889999999999999


Q ss_pred             HHHHhhh
Q psy13994         89 CRVHMLR   95 (97)
Q Consensus        89 l~~H~~~   95 (97)
                      ...|+..
T Consensus        84 ~~~hl~S   90 (390)
T KOG2785|consen   84 HENHLKS   90 (390)
T ss_pred             HHHHHHH
Confidence            9999764

>KOG2893|consensus

Probab=89.97  E-value=0.07  Score=30.84  Aligned_cols=39  Identities=26%  Similarity=0.684  Sum_probs=29.3

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHH
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH   43 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h   43 (97)
                      .|.+.|.+...|.+|++    .+-|+|.+|.+...+-..|..|
T Consensus        15 ycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   15 YCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            48889999999988885    4569999998776555444444

>KOG0717|consensus

Probab=87.94  E-value=0.31  Score=30.98  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +-|.+|+|+|.+..+|.+|..+
T Consensus       293 lyC~vCnKsFKseKq~kNHEnS  314 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENS  314 (508)
T ss_pred             eEEeeccccccchHHHHhhHHH
Confidence            5599999999999999999653

>KOG3408|consensus

Probab=87.88  E-value=0.47  Score=24.57  Aligned_cols=26  Identities=23%  Similarity=0.439  Sum_probs=22.5

Q ss_pred             CCCCcccccchhhccChHHHHHHhhh
Q psy13994         70 GVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      |-..|-|..|.+-|.+...|+.|.++
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhc
Confidence            44568899999999999999999875

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=87.29  E-value=0.52  Score=26.99  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +.-|.|.+|++.|....-+.+|+...+
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcC
Confidence            445999999999999999999998866

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=87.22  E-value=0.21  Score=18.22  Aligned_cols=10  Identities=30%  Similarity=0.743  Sum_probs=8.1

Q ss_pred             CCcccccchh
Q psy13994         72 KKFGCEYCSA   81 (97)
Q Consensus        72 ~~~~C~~C~~   81 (97)
                      .+|.|+.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            4799999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=86.12  E-value=0.3  Score=18.12  Aligned_cols=10  Identities=30%  Similarity=0.673  Sum_probs=7.2

Q ss_pred             ccccchhhcc
Q psy13994         75 GCEYCSARFS   84 (97)
Q Consensus        75 ~C~~C~~~f~   84 (97)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            4778887774

Several members are annotated as putative helicases.

>KOG4167|consensus

Probab=85.82  E-value=0.22  Score=33.40  Aligned_cols=25  Identities=36%  Similarity=0.568  Sum_probs=22.6

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      -|.|.+|+|.|--...+..|+++|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4889999999999999999999883

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.43  E-value=0.27  Score=19.94  Aligned_cols=11  Identities=36%  Similarity=1.044  Sum_probs=9.1

Q ss_pred             cccccchhhcc
Q psy13994         74 FGCEYCSARFS   84 (97)
Q Consensus        74 ~~C~~C~~~f~   84 (97)
                      |+|+.||..|.
T Consensus         6 y~C~~Cg~~fe   16 (41)
T smart00834        6 YRCEDCGHTFE   16 (41)
T ss_pred             EEcCCCCCEEE
Confidence            78999998775

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=84.99  E-value=0.73  Score=26.07  Aligned_cols=56  Identities=14%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhh----ccChHHHHHH
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSAR----FSQKISCRVH   92 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~----f~~~~~l~~H   92 (97)
                      ..||.|.+|.+.|.++..         ..||-.|.....+...+      +--.|-+||+.    |.-.+.|+.-
T Consensus       194 ~IPF~C~iCKkdy~spvv---------t~CGH~FC~~Cai~~y~------kg~~C~~Cgk~t~G~f~V~~d~~km  253 (259)
T COG5152         194 KIPFLCGICKKDYESPVV---------TECGHSFCSLCAIRKYQ------KGDECGVCGKATYGRFWVVSDLQKM  253 (259)
T ss_pred             CCceeehhchhhccchhh---------hhcchhHHHHHHHHHhc------cCCcceecchhhccceeHHhhHHHH
Confidence            468999999998876543         26888888776665543      23458888874    4445555443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=84.90  E-value=0.54  Score=24.82  Aligned_cols=61  Identities=13%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             ccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCc-ccccchhhccChHH
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKF-GCEYCSARFSQKIS   88 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~-~C~~C~~~f~~~~~   88 (97)
                      -.+.+-|+|.+|..+.....-|+     ...-||......-..+-..-.    ..| .||.|..+|...+.
T Consensus        75 F~d~~lYeCnIC~etS~ee~FLK-----PneCCgY~iCn~Cya~LWK~~----~~ypvCPvCkTSFKss~~  136 (140)
T PF05290_consen   75 FLDPKLYECNICKETSAEERFLK-----PNECCGYSICNACYANLWKFC----NLYPVCPVCKTSFKSSSS  136 (140)
T ss_pred             ecCCCceeccCcccccchhhcCC-----cccccchHHHHHHHHHHHHHc----ccCCCCCccccccccccc
Confidence            45567799999998865444332     234566654433222222111    123 49999999987653

>KOG2482|consensus

Probab=84.29  E-value=0.64  Score=28.53  Aligned_cols=35  Identities=29%  Similarity=0.622  Sum_probs=26.2

Q ss_pred             HHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         59 SVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        59 ~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ..+..|.....  ..+.|-.|.|.|.....|..||+.
T Consensus       183 nelLehLkekL--~r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  183 NELLEHLKEKL--ERLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             HHHHHHHHHHH--hhheeeeeccccCCcHHHHHHHHh
Confidence            34444544332  257899999999999999999986

>KOG4167|consensus

Probab=84.17  E-value=0.25  Score=33.18  Aligned_cols=25  Identities=36%  Similarity=0.568  Sum_probs=23.1

Q ss_pred             ccccccccccccChHHHHHHHHHcc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.|.+|++.|..-..+..||.+|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4899999999999999999999887

>KOG2231|consensus

Probab=84.14  E-value=2.1  Score=28.76  Aligned_cols=65  Identities=23%  Similarity=0.534  Sum_probs=34.3

Q ss_pred             ccccccccccChHHHHHHHHHccc---cc------CccccChHHHHHHHHhccCCCCcccc--cch-hhccChHHHHHHh
Q psy13994         26 GCEYCSARFSQKISCRVHMLRHRD---VC------NKPYHRKSVLIAHLQSHEGVKKFGCE--YCS-ARFSQKISCRVHM   93 (97)
Q Consensus        26 ~C~~C~~~f~~~~~l~~h~~~~~~---~c------~~~~~~~~~~~~h~~~h~~~~~~~C~--~C~-~~f~~~~~l~~H~   93 (97)
                      .|..|...|.....|..|++..+.   .|      +..|..-..|..|-+    +.-|.|+  .|. +.|.....+..++
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR----~~HflCE~~~C~~~~f~~~~~~ei~l  259 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFR----KGHFLCEEEFCRTKKFYVAFELEIEL  259 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhh----hcCccccccccccceeeehhHHHHHH
Confidence            466677777777777777776652   22      223444445555544    3345565  452 3444443444444


Q ss_pred             h
Q psy13994         94 L   94 (97)
Q Consensus        94 ~   94 (97)
                      +
T Consensus       260 k  260 (669)
T KOG2231|consen  260 K  260 (669)
T ss_pred             H
Confidence            4

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.85  E-value=0.1  Score=19.78  Aligned_cols=11  Identities=45%  Similarity=1.026  Sum_probs=8.6

Q ss_pred             cccccchhhcc
Q psy13994         74 FGCEYCSARFS   84 (97)
Q Consensus        74 ~~C~~C~~~f~   84 (97)
                      |.|..|++.|.
T Consensus         1 ~sCiDC~~~F~   11 (28)
T PF08790_consen    1 FSCIDCSKDFD   11 (28)
T ss_dssp             EEETTTTEEEE
T ss_pred             CeeecCCCCcC
Confidence            46888999884

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=83.30  E-value=0.36  Score=20.03  Aligned_cols=12  Identities=33%  Similarity=0.935  Sum_probs=9.3

Q ss_pred             cccccchhhccC
Q psy13994         74 FGCEYCSARFSQ   85 (97)
Q Consensus        74 ~~C~~C~~~f~~   85 (97)
                      |+|..||..|-.
T Consensus         6 y~C~~Cg~~fe~   17 (42)
T PF09723_consen    6 YRCEECGHEFEV   17 (42)
T ss_pred             EEeCCCCCEEEE
Confidence            789999977753

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.21  E-value=0.76  Score=23.39  Aligned_cols=14  Identities=21%  Similarity=0.634  Sum_probs=7.9

Q ss_pred             CCcccccchhhccC
Q psy13994         72 KKFGCEYCSARFSQ   85 (97)
Q Consensus        72 ~~~~C~~C~~~f~~   85 (97)
                      .|..|+.||..|.-
T Consensus        25 ~PivCP~CG~~~~~   38 (108)
T PF09538_consen   25 DPIVCPKCGTEFPP   38 (108)
T ss_pred             CCccCCCCCCccCc
Confidence            45556666665543

The function of members of this family is unknown.

>PF15269 zf-C2H2_7: Zinc-finger

Probab=83.19  E-value=0.84  Score=19.27  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=17.5

Q ss_pred             cccccchhhccChHHHHHHhh
Q psy13994         74 FGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      |+|-+|..+....+.|.+|++
T Consensus        21 ykcfqcpftc~~kshl~nhmk   41 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMK   41 (54)
T ss_pred             ceeecCCcccchHHHHHHHHH
Confidence            678888888888888988876

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=83.11  E-value=2.9  Score=25.99  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=18.9

Q ss_pred             HhccCCCCcccccch-hhccChHHHHHH
Q psy13994         66 QSHEGVKKFGCEYCS-ARFSQKISCRVH   92 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H   92 (97)
                      +.|.-++-|.|.+|| +++.-...+.+|
T Consensus       367 klhgLd~ef~CEICgNyvy~GR~~FdrH  394 (470)
T COG5188         367 KLHGLDIEFECEICGNYVYYGRDRFDRH  394 (470)
T ss_pred             HhcCCCcceeeeecccccccchHHHHhh
Confidence            446667789999998 666555555555

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=82.82  E-value=1  Score=22.76  Aligned_cols=23  Identities=22%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             ccc----ccchhhccChHHHHHHhhhc
Q psy13994         74 FGC----EYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C----~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |.|    ..|+....+...++.|.+.+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~  107 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKE  107 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHh
Confidence            889    99999999999999998874

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.67  E-value=0.74  Score=24.32  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=14.6

Q ss_pred             CCCcccccchhhccChHHHHHHhhhc
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      +.-..|-+||+.|...   .+|++.|
T Consensus        70 ~d~i~clecGk~~k~L---krHL~~~   92 (132)
T PF05443_consen   70 PDYIICLECGKKFKTL---KRHLRTH   92 (132)
T ss_dssp             SS-EE-TBT--EESBH---HHHHHHT
T ss_pred             cCeeEEccCCcccchH---HHHHHHc
Confidence            3446799999998875   7888876

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=82.57  E-value=0.4  Score=20.75  Aligned_cols=16  Identities=31%  Similarity=0.613  Sum_probs=12.8

Q ss_pred             CCCcccccchhhccCh
Q psy13994         71 VKKFGCEYCSARFSQK   86 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~   86 (97)
                      ++++.|..||..|.-.
T Consensus         2 Dk~l~C~dCg~~FvfT   17 (49)
T PF13451_consen    2 DKTLTCKDCGAEFVFT   17 (49)
T ss_pred             CeeEEcccCCCeEEEe
Confidence            5778999999988743

>KOG0978|consensus

Probab=82.47  E-value=0.62  Score=31.25  Aligned_cols=53  Identities=19%  Similarity=0.464  Sum_probs=31.7

Q ss_pred             ccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      ...|+.|...+....         ...|+-.|.....-...     +-+.-+||.|+.+|...--+.
T Consensus       643 ~LkCs~Cn~R~Kd~v---------I~kC~H~FC~~Cvq~r~-----etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAV---------ITKCGHVFCEECVQTRY-----ETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             ceeCCCccCchhhHH---------HHhcchHHHHHHHHHHH-----HHhcCCCCCCCCCCCcccccc
Confidence            357899975543222         13688887754332221     123456999999998765443

>KOG4124|consensus

Probab=81.77  E-value=0.097  Score=31.92  Aligned_cols=68  Identities=21%  Similarity=0.391  Sum_probs=41.1

Q ss_pred             CCcccccc--ccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHH
Q psy13994         22 VKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRV   91 (97)
Q Consensus        22 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~   91 (97)
                      .+|+.|++  |++.......|..|-..  ..|...-.....-.-|...-...|+|+|++|.+.+.....|.-
T Consensus       347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~--~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~  416 (442)
T KOG4124|consen  347 DKPYKCPVPNCDKAYKNQNGLKYHKLH--GHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKY  416 (442)
T ss_pred             cCCCCCCCCcchhhcccCcceeecccc--CcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCc
Confidence            47788854  88888887777655433  2233221111122234444455789999999998886655543

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=80.82  E-value=0.96  Score=25.95  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             CCCCcccccchhhccChHHHHHHhhh
Q psy13994         70 GVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .+..|.|+.|+|-|.-..=...|+..
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~n   99 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFN   99 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhh
Confidence            45579999999999998888888765

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-06
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		3e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-06
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		3e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C K + +++ L AH ++H G K + C  C   FSQ    R H   H          C K 
Sbjct: 83  CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           + R+  L  H ++H G K + C  C   FS++ +  VH   H
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 1  VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNK 53
          +C K + R S L  HL  H   + + C+YC  RF QK   + H   H         VC K
Sbjct: 6  ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 65
Query: 54 PYHRKSVLIAHLQSHEG 70
           + + S LI H + H G
Sbjct: 66 AFSQSSNLITHSRKHTG 82

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHRDV-------CN 52
           CNK+Y + S L  H + H G K + C++  C  RFS+    + H  RH  V       C 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 53  KPYHRKSVLIAHLQSHEGVKKFGCEYCS 80
           + + R   L  H ++H G K F C + S
Sbjct: 74  RKFSRSDHLKTHTRTHTGEKPFSCRWPS 101

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 21/83 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ +K+ L  H++ H G K F C  C   FSQ+ S                     L
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS---------------------L 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFS 84
           AH+++H G K F C+ C  +F+
Sbjct: 51 NAHIRTHTGEKPFACDICGRKFA 73

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K Y + S L AHL++H G K + C++                   D C   + R   L
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW-------------------DGCGWKFARSDEL 53
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H + H G + F C+ C   FS+     +HM RH
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K Y + S L AHL++H G K + C++                   D C   + R   L
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW-------------------DGCGWKFARSDEL 54
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H + H G + F C+ C   FS+     +HM RH
Sbjct: 55 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K Y + S L AHL++H G K + C +                   + C+  + R   L
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTW-------------------EGCDWRFARSDEL 63
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
            H + H G K F C  C+  FS+     +HM RH+
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR----------DV 50
            C+K++  K  L  H + H G K F C  C   + +K +   H  R+            V
Sbjct: 12  TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV 71
Query: 51  CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
           C + + R+  L  H+ SH G   + C  CS +F QK   + HM++
Sbjct: 72  CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ R + L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ R + L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ R   L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ R   L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ R   L  H++ H G K F C  C   FS                     R   L
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 49
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 50 TTHIRTHTGEKPFACDICGRKFAR 73

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ +K+ L  H++ H G K F C  C   FSQ                        L
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTG---------------------L 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFS 84
            H+++H G K F C+ C  +F+
Sbjct: 51 NQHIRTHTGEKPFACDICGRKFA 73

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++   S L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1  VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD-------VCNK 53
          VC K + RK  L  H++ H GVK + C+ C    +   S   H+  H D       +C  
Sbjct: 13 VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY 72
Query: 54 PYHRKSVLIAHLQSHEG 70
               S L  HL+SH G
Sbjct: 73 ASRNSSQLTVHLRSHTG 89

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ +   L  H++ H G K F C  C   FS                     R   L
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS---------------------RSDHL 50
Query: 62 IAHLQSHEGVKKFGCEYCSARFSQ 85
            H+++H G K F C+ C  +F++
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFAR 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	8e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-09
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	7e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 52.5 bits (127), Expect = 1e-10
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR-------DVCN 52
           CNK+Y + S L  H + H G K + C++  C  RFS+    + H  RH          C 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73

Query: 53  KPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
           + + R   L  H ++H G K F C +  C  +F++      H   H
Sbjct: 74  RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 51.0 bits (123), Expect = 8e-10
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR----------DVC 51
           C+K++  K  L  H + H G K F C  C   + +K +   H  R+            VC
Sbjct: 13  CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72

Query: 52  NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
            + + R+  L  H+ SH G   + C  CS +F QK   + HM++
Sbjct: 73  QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAH---LQSH 68
            G     C  C  +F  K   +VH  +H          C K Y RK  L+ H      +
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61

Query: 69 EGVKKFGCEYCSARFSQKISCRVHMLRH 96
             + F C  C   F +++  R+HM+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSH 89

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.4 bits (119), Expect = 2e-09
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH---------RDVCN 52
           C K +   S +  HL +H G +   C  C   F +    + H L H          + C 
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71

Query: 53  KPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
           K +     L  H++ H G + + C +  C+ +F+Q  + + H+L H
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDV 50
           C K +   S L  H   H G K F C +  C  RFS   + R H+  H          D 
Sbjct: 40  CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99

Query: 51  CNKPYHRKSVLIAHLQSHEGVKKF 74
           CNK + + + L +H+ +H   K  
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKNN 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 19/113 (16%)

Query: 2   CNKQYHRKSVLIAHLQS---HEGVKKFGCEYCSAR-----FSQKISCRVHMLRH------ 47
           C++++  +  L+ H+ S   H   K+F C +         F  +    VHM RH      
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68

Query: 48  ---RDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLR 95
               + C K Y R   L  HL+SH G K + CE+  CS  FS       H  R
Sbjct: 69  KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 24/99 (24%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKS 59
           C K Y R   L  HL+SH G K + CE+  CS  FS       H  R             
Sbjct: 75  CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR------------- 121

Query: 60  VLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
                  +H   K + C+   C+ R++   S R H+   
Sbjct: 122 -------THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.4 bits (116), Expect = 4e-09
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K Y + S L AHL++H G K + C +                   + C+  + R   L
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTW-------------------EGCDWRFARSDEL 63

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H + H G K F C  C+  FS+     +HM RH
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 40.7 bits (96), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRD 49
           C+ ++ R   L  H + H G K F C  C+  FS+     +HM RH++
Sbjct: 53  CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.1 bits (113), Expect = 6e-09
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 19/82 (23%)

Query: 12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGV 71
            +  ++H G K + C  C ARF+Q  + ++H+L+                      E V
Sbjct: 3  SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK-------------------HTENV 43

Query: 72 KKFGCEYCSARFSQKISCRVHM 93
           KF C +C    ++K    VH+
Sbjct: 44 AKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.1 bits (87), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 1  VCNKQYHRKSVLIAHLQSH--EGVKKFGCEYCSARFSQKISCRVHM 44
          +C+ ++ +   +  H+     E V KF C +C    ++K    VH+
Sbjct: 20 ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 61 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            +  ++H G K + C  C ARF+Q  + ++H+L+ 
Sbjct: 3  SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 20/115 (17%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKF---------GCEYCSARFSQKISCRVHMLRH----- 47
           C++ +     L+ H+                   C      F  K     H+  H     
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90

Query: 48  ----RDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH 96
                  C K + R   L  H ++H G K F CE+  C  RF+     + HM  H
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 18/110 (16%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR------------- 48
                      ++     E       + C   FS       H+                 
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 49  ---DVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHM 93
                  K +  K  L+ H++ H G K F C +  C   F++  + ++H 
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 46.6 bits (111), Expect = 1e-08
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 18/78 (23%)

Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY 78
            G     CE C     QK S   H  +H +                       +F CE+
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQRKHAE------------------TVAALRFPCEF 43

Query: 79 CSARFSQKISCRVHMLRH 96
          C  RF +  S   H  + 
Sbjct: 44 CGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.8 bits (101), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 1  VCNKQYHRKSVLIAHLQSH---EGVKKFGCEYCSARFSQKISCRVHMLRH 47
          +C     +K+ L  H + H       +F CE+C  RF +  S   H  + 
Sbjct: 12 ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 44.8 bits (107), Expect = 7e-08
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 21/95 (22%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C++++ +   L  H++ H G K F C  C   FS+                        L
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR---------------------SDHL 50

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H+++H G K F C+ C  +F++    + H   H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.8 bits (107), Expect = 8e-08
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K Y + S L AHL++H G K + C++                     C   + R   L
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG-------------------CGWKFARSDEL 53

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H + H G + F C+ C   FS+     +HM RH
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C K + +++ L AH ++H G K + C  C   FSQ    R H   H          C K 
Sbjct: 83  CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
           + R+  L  H ++H G K + C  C   FS++ +  VH
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C K + R   L  H ++H G K + C  C   FS K     H   H          C K 
Sbjct: 27  CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS 86

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           + +++ L AH ++H G K + C  C   FSQ    R H   H
Sbjct: 87  FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C K +  K  L  H ++H G K + C  C   FSQ+ + R H   H          C K 
Sbjct: 55  CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH 92
           + + + L AH ++H G K + C  C   FS++ +   H
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 8   RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSV 60
             S  +A      G K + C  C   FS+      H   H          C K +  K  
Sbjct: 5   GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64

Query: 61  LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
           L  H ++H G K + C  C   FSQ+ + R H   H
Sbjct: 65  LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDV 50
           C   Y++   L AHL  H G K F C+   C   F+       H L H          D 
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79

Query: 51  CNKPYHRKSVLIAHLQSHEGVKKF----GCEYCSARFSQKISCRVHMLRH 96
           C+  +  K+ +  H      +K        E C   F +    +VH   H
Sbjct: 80  CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 13 IAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH---------RDVCNKPYHRKSVL 61
          +         K++ C +  C A +++    + H+ +H          + C K +     L
Sbjct: 1  MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60

Query: 62 IAHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRH 96
            H  +H G K F C+   C  RF+ K + + H  R 
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 13/107 (12%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKF----GCEYCSARFSQKISCRVHMLRH---------R 48
           C+ ++  K+ +  H      +K        E C   F +    +VH   H          
Sbjct: 80  CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139

Query: 49  DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR 95
           + C+K +   S L  H + H G      + CS           H+  
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.3 bits (98), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEG 70
          S        CE C   FS+K   + HM  H          C+      S L  HL+ H  
Sbjct: 2  SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 71 VKKFGCEYCSARFSQKISCRVHMLRH 96
           + F C+ C           VH+  H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.8 bits (94), Expect = 7e-06
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 22/96 (22%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C + + R   L  H+++H G K F C+ C  +F++    + H          P       
Sbjct: 9  CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI---LPIL----- 60

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
                         +      S+       + R +
Sbjct: 61 --------------EDKVEELLSKNYHLENEVARLK 82

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.1 bits (95), Expect = 8e-06
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 9  KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVL 61
           S         +  K+F C++C   F++  +  +H   H        D+C+K + R+  L
Sbjct: 2  SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H   H   K F C+ C   F Q  +  VH   H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 8   RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYH----------- 56
             S    +     G  KF C+ CSA +   +   VHM       +  +            
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 57  -RKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
            RK  L+      +  K   C YC   F       VHM++ +
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)

Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY 78
           EG   + C+ CS  ++   +   H +                         VK + C +
Sbjct: 5  KEGEHTYRCKVCSRVYTHISNFCRHYVTS-------------------HKRNVKVYPCPF 45

Query: 79 CSARFSQKISCRVHMLRHR 97
          C   F++K +   H+    
Sbjct: 46 CFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 36.4 bits (85), Expect = 8e-05
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 1  VCNKQYHRKSVLIAHLQS--HEGVKKFGCEYCSARFSQKISCRVHMLRHRDV 50
          VC++ Y   S    H  +     VK + C +C   F++K +   H+     +
Sbjct: 15 VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 37.7 bits (88), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
          C++++ R   L  H++ H G K F C  C   FS+      H+  H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
          C++ + R   L  H++ H G K F C  C   FS+      H+  H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 47
          C+     K+ L  H + H   + F C YCS    Q  +   HM + 
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 51 CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
          C+     K+ L  H + H   + F C YCS    Q  +   HM + 
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 36.3 bits (85), Expect = 1e-04
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSH--E 69
            G     CE C   F        H L H         VC   + RK  +  H++SH   
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 70 GVKKFGCEYCSARFSQKISCRVHMLR 95
            K + C+ C   FS+      H+ +
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH--RDVCNKPY---------HRKSV 60
            +  ++H G K + C +C   F QK    +H  R+   +     +          R++ 
Sbjct: 3  SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62

Query: 61 LIAHLQSHEGVKKFGCEYC 79
          +  H  +  G      E  
Sbjct: 63 MARHADNCAGPDGVEGENS 81

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 2   CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKP 54
           C K +  KS    H+  H G++ +GC  C  +F  K     HM  H        ++C K 
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74

Query: 55  YHRKSVLIAHLQSHEGVKKFGCEYCSARFSQK 86
           +  +     H+      K +         ++ 
Sbjct: 75  FMWRDSFHRHV--TSCTKSYEAAKAEQNTTEA 104

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 7/85 (8%)

Query: 1   VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSV 60
             +    +    +    +      + C  CSA     +    H+  H           ++
Sbjct: 157 ATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH-------GNM 209

Query: 61  LIAHLQSHEGVKKFGCEYCSARFSQ 85
            +   +    + +F   + +    Q
Sbjct: 210 TLTSSEIQRHITEFISSWQNHPIVQ 234

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 6/49 (12%), Positives = 14/49 (28%)

Query: 49  DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR 97
           +  +    +    +    +      + C  CSA     +    H+  H 
Sbjct: 156 EATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 34.3 bits (80), Expect = 7e-04
 Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 21/95 (22%)

Query: 2  CNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVL 61
          C K + R S L  HL  H   + + C+YC  RF QK                     S +
Sbjct: 7  CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK---------------------SDM 45

Query: 62 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH 96
            H   H G K   C+ C   FSQ  +   H  +H
Sbjct: 46 KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.95
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.9
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.89
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.88
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.88
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.88
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.87
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.86
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.86
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.79
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.75
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.73
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.72
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.72
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.71
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.67
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.67
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.62
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.54
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.54
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.53
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.52
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.49
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.49
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.48
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.48
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.47
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.47
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.46
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.46
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.46
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.46
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.44
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.44
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.44
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.43
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.43
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.42
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.41
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.4
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.36
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.36
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.35
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.35
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.34
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.33
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.32
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.32
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.31
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.3
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.29
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.29
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.29
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.28
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.27
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.27
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.27
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.26
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.26
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.25
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.25
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.24
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.24
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.24
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.23
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.23
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.23
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.23
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.22
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.22
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.22
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.21
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.2
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.18
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.18
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.18
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	99.18
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.17
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	99.17
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.16
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.15
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.15
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.12
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.11
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.11
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	99.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.09
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.03
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.59
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.01
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	99.0
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	99.0
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.98
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.96
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.94
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.94
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.93
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.93
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.93
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.45
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.91
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.9
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.42
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.87
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.87
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.86
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.86
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.84
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.82
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.81
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.81
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.78
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.78
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.73
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.72
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.72
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.66
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.62
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.62
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.6
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.59
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.59
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.59
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.54
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.54
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.49
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.47
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.46
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.45
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.78
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.76
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.39
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.32
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.3
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.25
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.22
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.22
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.21
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.2
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.92
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.76
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.49
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.69
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.22
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.11
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	95.73
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.66
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	93.54
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.66
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	92.26
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	92.15
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	90.98
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	90.91
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.61
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.22
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	88.49
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	88.31
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	87.68
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	87.42
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	85.74
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.1
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	83.45
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.13
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	80.44

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=4e-27  Score=120.14  Aligned_cols=96  Identities=32%  Similarity=0.612  Sum_probs=90.5

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc----------cccCccccChHHHHHHHHhccC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR----------DVCNKPYHRKSVLIAHLQSHEG   70 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~----------~~c~~~~~~~~~~~~h~~~h~~   70 (97)
                      +|++.|.....|..|++.|.+++||.|++|++.|.....|..|+..+.          +.|++.|.....|..|++.|.+
T Consensus        12 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           12 TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             TTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            589999999999999999999999999999999999999999998642          5799999999999999999999


Q ss_pred             CCCcccccchhhccChHHHHHHhhh-c
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLR-H   96 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~-h   96 (97)
                      ++||.|++|++.|.+...|..|++. |
T Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           92 EMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCccCCCccchhCCHHHHHHHHHHHC
Confidence            9999999999999999999999974 5

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.95  E-value=2e-27  Score=120.60  Aligned_cols=95  Identities=33%  Similarity=0.643  Sum_probs=91.3

Q ss_pred             cchhccCchHHHHHHhhccCCCccccc--cccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCC
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVK   72 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~   72 (97)
                      |++.|.....|..|++.|.+++||.|+  .|++.|.....|..|++.+.       +.|++.|.....|..|++.|.+++
T Consensus        14 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (119)
T 2jp9_A           14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK   93 (119)
T ss_dssp             SCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCC
T ss_pred             CcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999  79999999999999999886       579999999999999999999999


Q ss_pred             Cccc--ccchhhccChHHHHHHhhhc
Q psy13994         73 KFGC--EYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        73 ~~~C--~~C~~~f~~~~~l~~H~~~h   96 (97)
                      +|.|  +.|++.|.....|..|+++|
T Consensus        94 ~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           94 PFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999  89999999999999999987

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=4e-27  Score=127.80  Aligned_cols=97  Identities=32%  Similarity=0.624  Sum_probs=74.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      +|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.+.       +.|++.|.....|..|++.|.+++|
T Consensus        82 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  161 (190)
T 2i13_A           82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP  161 (190)
T ss_dssp             TTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             ccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            366777777777777777777777777777777777777777777665       4688888888888888888888888


Q ss_pred             cccccchhhccChHHHHHHhhhcC
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.|++|++.|.....|..|+++|+
T Consensus       162 ~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          162 YKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTC-
T ss_pred             eECCCCCCccCCHHHHHHHHHhcC
Confidence            888888888888888888888774

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.94  E-value=1.1e-26  Score=118.71  Aligned_cols=96  Identities=27%  Similarity=0.561  Sum_probs=90.1

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------c--ccCccccChHHHHHHHHhccCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIAHLQSHEGV   71 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~h~~~h~~~   71 (97)
                      +|++.|.....|..|++.| ++++|.|.+|++.|.....|..|++.+.       +  .|++.|.....|..|++.|.++
T Consensus        12 ~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           12 GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             TCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            4899999999999999999 8899999999999999999999999887       2  3999999999999999999999


Q ss_pred             CCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|.|+  .|++.|.+...|..|+++|+
T Consensus        91 ~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           91 RPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            999996  59999999999999999984

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=6.8e-26  Score=122.97  Aligned_cols=96  Identities=31%  Similarity=0.601  Sum_probs=75.0

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      +|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++
T Consensus        54 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  133 (190)
T 2i13_A           54 ECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP  133 (190)
T ss_dssp             TTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            367777777777777777777777777777777777777777777665       4688888888888888888888888


Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |.|++|++.|.....|..|+++|
T Consensus       134 ~~C~~C~~~f~~~~~L~~H~~~H  156 (190)
T 2i13_A          134 YKCPECGKSFSREDNLHTHQRTH  156 (190)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHhc
Confidence            88888888888888888888776

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.5e-25  Score=121.60  Aligned_cols=97  Identities=29%  Similarity=0.532  Sum_probs=85.2

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccc--cccccccChHHHHHHH-HHcc----------cccCccccChHHHHHHHHh
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCE--YCSARFSQKISCRVHM-LRHR----------DVCNKPYHRKSVLIAHLQS   67 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~-~~~~----------~~c~~~~~~~~~~~~h~~~   67 (97)
                      +|++.|.....|..|+++|.+++||.|+  .|++.|.....|..|+ +.+.          +.|++.|.....|..|+++
T Consensus        49 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A           49 GCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             TCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG
T ss_pred             CCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH
Confidence            4888899999999999999998999998  8999999999999998 4442          4589999999999999999


Q ss_pred             ccCCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+++||.|+.  |++.|.+...|..|+++|+
T Consensus       129 H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             GSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             hCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            99999999987  9999999999999998874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=9.6e-27  Score=120.28  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=37.3

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      +|.|++||.|++|+++|.....|..|++.|.       +.|++.|.....|..|+++|.+++||.|++|+++|.+.+.|.
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~   95 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMS   95 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHH
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHH
Confidence            3444444444444444444444444444443       234444444444444444444444444444444444444444


Q ss_pred             HHhhh
Q psy13994         91 VHMLR   95 (97)
Q Consensus        91 ~H~~~   95 (97)
                      .|+++
T Consensus        96 ~H~~~  100 (133)
T 2lt7_A           96 SHIKS  100 (133)
T ss_dssp             HHHHH
T ss_pred             HHhHH
Confidence            44444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.5e-25  Score=118.17  Aligned_cols=96  Identities=23%  Similarity=0.536  Sum_probs=86.2

Q ss_pred             cchhccCchHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHcc-------cc--cCccccChHHHHHHH-Hhcc
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR-------DV--CNKPYHRKSVLIAHL-QSHE   69 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~-------~~--c~~~~~~~~~~~~h~-~~h~   69 (97)
                      |++.|.....|..|++.|.+++||.|++  |++.|.....|..|++.+.       +.  |++.|.....|..|+ +.|.
T Consensus        45 c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           45 ELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            4588999999999999999999999985  9999999999999999887       34  999999999999998 7899


Q ss_pred             CCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         70 GVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        70 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++++|.|++  |++.|.....|..|+++|+
T Consensus       125 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             SCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            999999988  9999999999999999874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=3.4e-25  Score=116.88  Aligned_cols=97  Identities=28%  Similarity=0.533  Sum_probs=89.6

Q ss_pred             CcchhccCchHHHHHHhh-ccCCCc--------cccccccccccChHHHHHHHHHcc-------cc--cCccccChHHHH
Q psy13994          1 VCNKQYHRKSVLIAHLQS-HEGVKK--------FGCEYCSARFSQKISCRVHMLRHR-------DV--CNKPYHRKSVLI   62 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~h~~~~~-------~~--c~~~~~~~~~~~   62 (97)
                      +|++.|.....|..|++. |.++.+        +.|.+|++.|.....|..|++.+.       ..  |++.|.....|.
T Consensus        30 ~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~  109 (155)
T 2rpc_A           30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK  109 (155)
T ss_dssp             CCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHH
T ss_pred             cCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHH
Confidence            489999999999999997 776655        899999999999999999999887       34  999999999999


Q ss_pred             HHHHhccCCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|++.|.++++|.|+.  |++.|.....|..|+++|+
T Consensus       110 ~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A          110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             HHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             HHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            9999999999999997  9999999999999999884

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=2.7e-24  Score=111.08  Aligned_cols=87  Identities=22%  Similarity=0.418  Sum_probs=79.8

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCC-
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVK-   72 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~-   72 (97)
                      +|++.|...+.|..|+++|.+++||.|++|++.|.....|..|+++|+       +.|++.|.....|..|++.+.+++ 
T Consensus        27 ~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           27 VCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             TTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             CCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence            599999999999999999999999999999999999999999999986       579999999999999999987654 


Q ss_pred             -----CcccccchhhccChH
Q psy13994         73 -----KFGCEYCSARFSQKI   87 (97)
Q Consensus        73 -----~~~C~~C~~~f~~~~   87 (97)
                           +|+|.+|++.|....
T Consensus       107 ~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A          107 SGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             TSSSCCEEECCCCSSCCCCC
T ss_pred             CCCCCCeecCCCCchhhhcc
Confidence                 589999999887643

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=3.9e-26  Score=115.35  Aligned_cols=88  Identities=27%  Similarity=0.420  Sum_probs=80.9

Q ss_pred             chHHHHHHhhccCCCccccccccccccChHHHHHHHHH--cc--------cccCccc--cChHHHHHHHHhccCCCCccc
Q psy13994          9 KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR--HR--------DVCNKPY--HRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus         9 ~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~--~~--------~~c~~~~--~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      .+.|..|+++|.+++||.|.+|++.|.....|..|++.  +.        +.|++.|  .....|..|++.|.+++||.|
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C   83 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC   83 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceEC
Confidence            45677899999999999999999999999999999998  43        4688888  888999999999999999999


Q ss_pred             ccchhhccChHHHHHHhhhc
Q psy13994         77 EYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        77 ~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ++|++.|.....|..|+++|
T Consensus        84 ~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHT
T ss_pred             CCCCCccCCHHHHHHHHHHh
Confidence            99999999999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=9e-24  Score=114.63  Aligned_cols=97  Identities=30%  Similarity=0.549  Sum_probs=90.2

Q ss_pred             CcchhccCchHHHHHHhhccCCCcccc--ccccccccChHHHHHHHHHcc-------c--ccCccccChHHHHHHH-Hhc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGC--EYCSARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIAHL-QSH   68 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C--~~C~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~h~-~~h   68 (97)
                      .|++.|.....|..|++.|.+++||.|  ..|++.|.....|..|++.+.       +  .|++.|.....|..|+ +.|
T Consensus        19 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             TTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred             CCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            489999999999999999999999999  889999999999999999887       3  7999999999999999 667


Q ss_pred             -cCCCCccc--ccchhhccChHHHHHHhhhcC
Q psy13994         69 -EGVKKFGC--EYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        69 -~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~   97 (97)
                       .++++|.|  +.|++.|.....|..|+++|+
T Consensus        99 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             STTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             CCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence             47889999  899999999999999999884

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=3.3e-23  Score=109.16  Aligned_cols=97  Identities=33%  Similarity=0.573  Sum_probs=88.2

Q ss_pred             CcchhccCchHHHHHHh---hccCCCccccccc-----cccccChHHHHHHHHHcc-------c--ccCccccChHHHHH
Q psy13994          1 VCNKQYHRKSVLIAHLQ---SHEGVKKFGCEYC-----SARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIA   63 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~   63 (97)
                      +|++.|.+...|..|++   +|.++++|.|++|     ++.|.....|..|++.+.       +  .|++.|.....|..
T Consensus         8 ~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~   87 (155)
T 2gli_A            8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT   87 (155)
T ss_dssp             TCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHH
T ss_pred             CCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHH
Confidence            58999999999999998   6888999998753     499999999999999886       2  49999999999999


Q ss_pred             HHHhccCCCCccccc--chhhccChHHHHHHh-hhcC
Q psy13994         64 HLQSHEGVKKFGCEY--CSARFSQKISCRVHM-LRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~   97 (97)
                      |++.|.++++|.|++  |++.|.+...|..|+ ++|+
T Consensus        88 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             HHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             HHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999998  999999999999998 6773

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=9.1e-23  Score=99.96  Aligned_cols=79  Identities=27%  Similarity=0.452  Sum_probs=70.3

Q ss_pred             ccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHH
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRV   91 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~   91 (97)
                      ..+++||.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++|.|++|++.|.....|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            356788888889888888888888888776       4688899999999999999999999999999999999999999


Q ss_pred             HhhhcC
Q psy13994         92 HMLRHR   97 (97)
Q Consensus        92 H~~~h~   97 (97)
                      |+++|+
T Consensus        83 H~~~h~   88 (96)
T 2dmd_A           83 HLRSHT   88 (96)
T ss_dssp             HHTTCC
T ss_pred             HHHHhc
Confidence            999884

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.8e-23  Score=102.55  Aligned_cols=82  Identities=21%  Similarity=0.342  Sum_probs=75.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcc-----cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHH
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l   89 (97)
                      ++++|.+++||.|.+|++.|.....|..|++.+.     +.|++.|.....|..|+. |.+++||.|++|++.|.....|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            3567889999999999999999999999999876     579999999999999996 9999999999999999999999


Q ss_pred             HHHhh-hcC
Q psy13994         90 RVHML-RHR   97 (97)
Q Consensus        90 ~~H~~-~h~   97 (97)
                      ..|++ +|+
T Consensus        86 ~~H~~~~H~   94 (107)
T 1wjp_A           86 WRHQVEVHN   94 (107)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHcC
Confidence            99997 663

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.88  E-value=1.2e-22  Score=98.46  Aligned_cols=76  Identities=29%  Similarity=0.624  Sum_probs=60.5

Q ss_pred             CCccccc--cccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHH
Q psy13994         22 VKKFGCE--YCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH   92 (97)
Q Consensus        22 ~~~~~C~--~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H   92 (97)
                      ++||.|+  .|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++|.|++|++.|.....|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            4566776  47777777777777766654       35677777777888888889999999999999999999999999


Q ss_pred             hhhcC
Q psy13994         93 MLRHR   97 (97)
Q Consensus        93 ~~~h~   97 (97)
                      +++|+
T Consensus        82 ~~~H~   86 (90)
T 1a1h_A           82 TKIHL   86 (90)
T ss_dssp             HGGGG
T ss_pred             HHHhc
Confidence            99984

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.88  E-value=1.3e-22  Score=96.73  Aligned_cols=76  Identities=34%  Similarity=0.676  Sum_probs=56.9

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccch
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCS   80 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~   80 (97)
                      +|++.|.....|..|++.|.+++||.|+.|++.|.                     ....|..|++.|.++++|.|+.|+
T Consensus         6 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~---------------------~~~~l~~H~~~h~~~~~~~C~~C~   64 (82)
T 2kmk_A            6 ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH---------------------QKSDMKKHTFIHTGEKPHKCQVCG   64 (82)
T ss_dssp             SSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEES---------------------SHHHHHHHHHHHHTCCCEECTTTS
T ss_pred             CCcccccCchhHHHHHHHcCCCCCeeCCcCChhhC---------------------CHHHHHHHHHHhcCCCCCcCCCcc
Confidence            35666666666666666666666666666655554                     455556666677889999999999


Q ss_pred             hhccChHHHHHHhhhcC
Q psy13994         81 ARFSQKISCRVHMLRHR   97 (97)
Q Consensus        81 ~~f~~~~~l~~H~~~h~   97 (97)
                      +.|.....|..|+++|+
T Consensus        65 ~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           65 KAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEESSHHHHHHHHHHHC
T ss_pred             hhhCChHHHHHHHHhhC
Confidence            99999999999999985

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.87  E-value=1.1e-22  Score=91.68  Aligned_cols=55  Identities=22%  Similarity=0.503  Sum_probs=47.8

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+||.|.+||++|....                     .|..|+++|.+++||.|++||++|.+.+.|..|+++|+
T Consensus         2 EKpy~C~~C~k~F~~~~---------------------~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDAS---------------------GLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHH---------------------HHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHH---------------------HHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            78999998887776555                     45667778999999999999999999999999999995

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.87  E-value=3e-22  Score=100.31  Aligned_cols=78  Identities=31%  Similarity=0.615  Sum_probs=72.5

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      .|.+++||.| .|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++|.|++|++.|.....|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            4778999999 89999999999999999886       579999999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q psy13994         91 VHMLRH   96 (97)
Q Consensus        91 ~H~~~h   96 (97)
                      .|+++|
T Consensus        83 ~H~~~~   88 (110)
T 2csh_A           83 RHVTSC   88 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.87  E-value=6e-22  Score=98.61  Aligned_cols=78  Identities=29%  Similarity=0.584  Sum_probs=71.2

Q ss_pred             cCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHH
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH   92 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H   92 (97)
                      .++++|.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++|.|++|++.|.....|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            45778999999999999999999998876       47899999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q psy13994         93 MLRHR   97 (97)
Q Consensus        93 ~~~h~   97 (97)
                      +++|+
T Consensus        93 ~~~H~   97 (106)
T 2ee8_A           93 KTLHM   97 (106)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99884

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=1.6e-21  Score=95.31  Aligned_cols=78  Identities=29%  Similarity=0.557  Sum_probs=65.8

Q ss_pred             cCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCC--CCcccccchhhccChHHHH
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGV--KKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~--~~~~C~~C~~~f~~~~~l~   90 (97)
                      .++++|.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++  ++|.|++|++.|.....|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            46677888888888888888888888775       46888888888888898888886  8999999999999999999


Q ss_pred             HHhh-hcC
Q psy13994         91 VHML-RHR   97 (97)
Q Consensus        91 ~H~~-~h~   97 (97)
                      .|++ +|+
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            9986 663

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.86  E-value=1.3e-21  Score=94.61  Aligned_cols=74  Identities=28%  Similarity=0.640  Sum_probs=53.0

Q ss_pred             cccccc--ccccccChHHHHHHHHHcc-------c--ccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHH
Q psy13994         24 KFGCEY--CSARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH   92 (97)
Q Consensus        24 ~~~C~~--C~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H   92 (97)
                      +|.|..  |++.|.....|..|++.+.       +  .|++.|.....|..|++.|.++++|.|+.|++.|.....|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            344444  4444444444444444443       1  3556666667777788888899999999999999999999999


Q ss_pred             hhhcC
Q psy13994         93 MLRHR   97 (97)
Q Consensus        93 ~~~h~   97 (97)
                      +++|.
T Consensus        85 ~~~H~   89 (89)
T 2wbs_A           85 MKRHF   89 (89)
T ss_dssp             GGGGC
T ss_pred             HHhhC
Confidence            99985

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=92.63  Aligned_cols=76  Identities=28%  Similarity=0.615  Sum_probs=65.1

Q ss_pred             CCcccccc--ccccccChHHHHHHHHHcc-------c--ccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         22 VKKFGCEY--CSARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        22 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      .++|.|..  |++.|.....|..|++.+.       +  .|++.|.....|..|++.|.++++|.|++|++.|.....|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            45677875  8888888888888887765       1  47888888888999999999999999999999999999999


Q ss_pred             HHhhhcC
Q psy13994         91 VHMLRHR   97 (97)
Q Consensus        91 ~H~~~h~   97 (97)
                      .|+++|+
T Consensus        93 ~H~~~H~   99 (100)
T 2ebt_A           93 LHMKRHQ   99 (100)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999985

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=1.4e-20  Score=95.25  Aligned_cols=77  Identities=30%  Similarity=0.647  Sum_probs=72.3

Q ss_pred             cCCCcccccc--ccccccChHHHHHHHHHcc-------c--ccCccccChHHHHHHHHhccCCCCcccccchhhccChHH
Q psy13994         20 EGVKKFGCEY--CSARFSQKISCRVHMLRHR-------D--VCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKIS   88 (97)
Q Consensus        20 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~-------~--~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~   88 (97)
                      .+++||.|.+  |++.|.....|..|++.+.       +  .|++.|.....|..|++.|.++++|.|++|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4688999997  9999999999999999876       3  699999999999999999999999999999999999999


Q ss_pred             HHHHhhhc
Q psy13994         89 CRVHMLRH   96 (97)
Q Consensus        89 l~~H~~~h   96 (97)
                      |..|+++|
T Consensus        82 l~~H~~~h   89 (119)
T 2jp9_A           82 LKTHTRTH   89 (119)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999987

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.1e-19  Score=92.42  Aligned_cols=78  Identities=29%  Similarity=0.617  Sum_probs=72.2

Q ss_pred             cCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHh---ccCCCCcccccchhhccChHHH
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQS---HEGVKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~---h~~~~~~~C~~C~~~f~~~~~l   89 (97)
                      .++++|.|++|++.|.....|..|++.+.       +.|++.|.....|..|+..   +.++++|.|++|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            47889999999999999999999999887       5799999999999999985   5788999999999999999999


Q ss_pred             HHHhhhcC
Q psy13994         90 RVHMLRHR   97 (97)
Q Consensus        90 ~~H~~~h~   97 (97)
                      ..|+++|+
T Consensus        83 ~~H~~~h~   90 (124)
T 2dlq_A           83 RLHMVSHT   90 (124)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99999874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=2.4e-19  Score=89.13  Aligned_cols=76  Identities=20%  Similarity=0.444  Sum_probs=71.8

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      +|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++
T Consensus        22 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           22 FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             SSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             CCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999999999999999999999887       5799999999999999999999999


Q ss_pred             ccc
Q psy13994         74 FGC   76 (97)
Q Consensus        74 ~~C   76 (97)
                      |.+
T Consensus       102 ~~~  104 (106)
T 2ee8_A          102 PTA  104 (106)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.79  E-value=1.9e-19  Score=86.10  Aligned_cols=73  Identities=26%  Similarity=0.429  Sum_probs=55.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      +|++.|.....|..|+++|.+++||.|++  |++.|.....                     |..|++.|.+   |.|+.
T Consensus         8 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~---------------------l~~H~~~h~~---~~C~~   63 (85)
T 2j7j_A            8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR---------------------LKRHEKVHAG---YPCKK   63 (85)
T ss_dssp             TCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHH---------------------HHHHHHHHHS---EECCS
T ss_pred             CCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHH---------------------HHHHHHHhCC---CCCCC
Confidence            36777777777777777777777777766  6666655555                     4455555555   99999


Q ss_pred             ---chhhccChHHHHHHhhhcC
Q psy13994         79 ---CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        79 ---C~~~f~~~~~l~~H~~~h~   97 (97)
                         |++.|.....|..|+++|+
T Consensus        64 ~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           64 DDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcC
Confidence               9999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.3e-19  Score=87.96  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             hccCchHHHHHHhhccCCCccccccccccc-cChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhc
Q psy13994          5 QYHRKSVLIAHLQSHEGVKKFGCEYCSARF-SQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARF   83 (97)
Q Consensus         5 ~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f-~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f   83 (97)
                      .|.....+..|++.+.+++||.|++|++.| .....                     |..|++.| +++||.|.+|++.|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~---------------------L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEG---------------------LKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHH---------------------HHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHH---------------------HHHHHHHH-CCCCeECCCCCCee
Confidence            455667788899999899999999888777 65555                     45566677 88999999999999


Q ss_pred             cChHHHHHH-hhhcC
Q psy13994         84 SQKISCRVH-MLRHR   97 (97)
Q Consensus        84 ~~~~~l~~H-~~~h~   97 (97)
                      .....|..| +++|+
T Consensus        73 ~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           73 RSLAGMKYHVMANHN   87 (96)
T ss_dssp             SSHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHhHHhcC
Confidence            999999999 88874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=5e-19  Score=85.57  Aligned_cols=73  Identities=26%  Similarity=0.572  Sum_probs=66.6

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      .|++.|.....|..|++.|.++++|.|..|++.|.....|..|++.+.       +.|++.|.....|..|+++|.++++
T Consensus        11 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             SCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC---
T ss_pred             CCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccCC
Confidence            389999999999999999999999999999999999999999999886       5799999999999999999998763

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=2.8e-19  Score=94.16  Aligned_cols=77  Identities=23%  Similarity=0.479  Sum_probs=72.3

Q ss_pred             CcchhccCchHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHcc-------cc--cCccccChHHHHHHHHhcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR-------DV--CNKPYHRKSVLIAHLQSHE   69 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~-------~~--c~~~~~~~~~~~~h~~~h~   69 (97)
                      +|++.|.....|..|++.|.+++||.|.+  |++.|.....|..|++.+.       +.  |++.|.....|..|+++|.
T Consensus        67 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  146 (155)
T 2rpc_A           67 REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT  146 (155)
T ss_dssp             TSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT
T ss_pred             CcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc
Confidence            48999999999999999999999999998  9999999999999999887       33  9999999999999999999


Q ss_pred             CCCCcccc
Q psy13994         70 GVKKFGCE   77 (97)
Q Consensus        70 ~~~~~~C~   77 (97)
                      +++||.|.
T Consensus       147 ~~k~~~c~  154 (155)
T 2rpc_A          147 SDKSGPSS  154 (155)
T ss_dssp             SCCCSCSC
T ss_pred             CCCCCCCC
Confidence            99999985

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=4.8e-20  Score=90.72  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             hccCchHHHHHHhhccCCCcccccccccccc-ChHHHHHHHHHcccccCccccChHHHHHHHHhccC-CCCcccccchhh
Q psy13994          5 QYHRKSVLIAHLQSHEGVKKFGCEYCSARFS-QKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEG-VKKFGCEYCSAR   82 (97)
Q Consensus         5 ~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~-~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~-~~~~~C~~C~~~   82 (97)
                      .+.....+..|+++|.++++|.|.+|++.|. ....|..|++.++                     + +++|.|.+|++.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~---------------------~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ---------------------KLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH---------------------HHHHHHSCSSSCCC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc---------------------CCCCCEECCCCCCc
Confidence            4555667789999999999999999999998 8887777766543                     3 345555555555


Q ss_pred             ccChHHHHHHhhhc
Q psy13994         83 FSQKISCRVHMLRH   96 (97)
Q Consensus        83 f~~~~~l~~H~~~h   96 (97)
                      |.....|..|+++|
T Consensus        64 F~~~~~L~~H~~~h   77 (98)
T 2gqj_A           64 FKSKAGLNYHTMAE   77 (98)
T ss_dssp             CSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            55555555555544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.2e-18  Score=84.21  Aligned_cols=74  Identities=32%  Similarity=0.564  Sum_probs=69.5

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKK   73 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~   73 (97)
                      +|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|.++++
T Consensus        13 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           13 VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             TTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            589999999999999999999999999999999999999999999987       5799999999999999999998875


Q ss_pred             c
Q psy13994         74 F   74 (97)
Q Consensus        74 ~   74 (97)
                      .
T Consensus        93 p   93 (96)
T 2dmd_A           93 P   93 (96)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.77  E-value=9.2e-19  Score=89.13  Aligned_cols=76  Identities=30%  Similarity=0.596  Sum_probs=68.9

Q ss_pred             CCCccccc--cccccccChHHHHHHHHHcc------cccCccccChHHHHHHHHhccCCCCccccc--chhhccChHHHH
Q psy13994         21 GVKKFGCE--YCSARFSQKISCRVHMLRHR------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCR   90 (97)
Q Consensus        21 ~~~~~~C~--~C~~~f~~~~~l~~h~~~~~------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~   90 (97)
                      ++++|.|+  .|++.|.....|..|++.+.      +.|++.|.....|..|++.|.++++|.|+.  |++.|.....|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            46789999  89999999999999999875      579999999999999999999999999986  999999999999


Q ss_pred             HHhhhc
Q psy13994         91 VHMLRH   96 (97)
Q Consensus        91 ~H~~~h   96 (97)
                      .|+++|
T Consensus        82 ~H~~~h   87 (124)
T 1ubd_C           82 THVRIH   87 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999887

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.76  E-value=1.4e-19  Score=87.38  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             CccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +||.|++|++.|.....|..|++.+.       +.|++.|.....|..|++.|.+ .+|.|+.|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            34444444444444444444444433       2344455555555556555553 688999999999999999999876


Q ss_pred             c
Q psy13994         96 H   96 (97)
Q Consensus        96 h   96 (97)
                      +
T Consensus        81 ~   81 (88)
T 1llm_C           81 L   81 (88)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.2e-18  Score=81.47  Aligned_cols=65  Identities=23%  Similarity=0.524  Sum_probs=51.7

Q ss_pred             cCCCcccccc--ccccccChHHHHHHHH-Hcc-------cc--cCccccChHHHHHHHHhccCCCCcccccchhhcc
Q psy13994         20 EGVKKFGCEY--CSARFSQKISCRVHML-RHR-------DV--CNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFS   84 (97)
Q Consensus        20 ~~~~~~~C~~--C~~~f~~~~~l~~h~~-~~~-------~~--c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~   84 (97)
                      +++++|.|..  |++.|.....|..|++ .|.       +.  |++.|.....|..|+++|.+++||.|++|+++|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3566777765  7777777777777777 454       24  7888888888999999999999999999999984

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=5.7e-19  Score=84.70  Aligned_cols=72  Identities=22%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             HHHHHhhccCCCccccccccccccChHHHHHHHHHcc-----------cccCccccChHHHHHHHHhccCCCCcccccch
Q psy13994         12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-----------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCS   80 (97)
Q Consensus        12 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-----------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~   80 (97)
                      +..|+++|.+++||.|.+|++.|.....|..|++.++           +.|++.|.....|..|++.|.+++++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            5578999999999999999999999999999987654           35788888888888888888888888888887


Q ss_pred             hhc
Q psy13994         81 ARF   83 (97)
Q Consensus        81 ~~f   83 (97)
                      .+|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.75  E-value=2.7e-18  Score=81.60  Aligned_cols=48  Identities=33%  Similarity=0.586  Sum_probs=45.2

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|++.|.+++||.|++|++.|.....|..|++.++
T Consensus        34 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           34 YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             SSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             cCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            589999999999999999999999999999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.4e-18  Score=81.02  Aligned_cols=61  Identities=31%  Similarity=0.531  Sum_probs=51.2

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .++|.+++||.|++|++.|.....|                     ..|++.|.+++||.|++|++.|.....|..|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L---------------------~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSIL---------------------VQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHH---------------------HHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHH---------------------HHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            4578899999999998887666554                     4555567788999999999999999999999998


Q ss_pred             cC
Q psy13994         96 HR   97 (97)
Q Consensus        96 h~   97 (97)
                      |+
T Consensus        65 H~   66 (72)
T 1x6e_A           65 HT   66 (72)
T ss_dssp             HH
T ss_pred             cC
Confidence            73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.8e-19  Score=83.24  Aligned_cols=65  Identities=31%  Similarity=0.596  Sum_probs=53.7

Q ss_pred             HHHHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccC-CCCcccccchhhccChHHHH
Q psy13994         12 LIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEG-VKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        12 l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~-~~~~~C~~C~~~f~~~~~l~   90 (97)
                      +..|+++|.+++||.|.+|++.|.....|..|++.                    .|.+ +++|.|++|++.|.....|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------------------~h~~~~~~~~C~~C~~~f~~~~~L~   62 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ--------------------KHTENVAKFHCPHCDTVIARKSDLG   62 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHH--------------------HSSSSCSSEECSSSSCEESSHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHH--------------------hcCCCCCccCCCCCCCccCCHHHHH
Confidence            44688999999999999999888877776666542                    3444 37999999999999999999


Q ss_pred             HHhhhc
Q psy13994         91 VHMLRH   96 (97)
Q Consensus        91 ~H~~~h   96 (97)
                      .|++++
T Consensus        63 ~H~~~~   68 (77)
T 2ct1_A           63 VHLRKQ   68 (77)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.73  E-value=3.1e-18  Score=77.10  Aligned_cols=48  Identities=27%  Similarity=0.511  Sum_probs=44.8

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||+.|...+.|..|+++|++++||.|++||++|.....|..|+++|+
T Consensus         9 ~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            9 FCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             TTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            599999999999999999999999999999999999999888888765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.9e-18  Score=78.15  Aligned_cols=61  Identities=23%  Similarity=0.487  Sum_probs=50.2

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHh-c-cCCCCcccccchhhccChHHHHHHh
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQS-H-EGVKKFGCEYCSARFSQKISCRVHM   93 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~   93 (97)
                      +++|.+++||.|++|++.|.....|..|+                     +. | .+++||.|+.|++.|...+.|..|+
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~---------------------~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHY---------------------VTSHKRNVKVYPCPFCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHH---------------------HHHSSSSCCCEECTTTCCEESCHHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHH---------------------HHHcCCCCcCeECCCCCCccCCHHHHHHHH
Confidence            35788999999999988887776665554                     44 4 4789999999999999999999999


Q ss_pred             hhcC
Q psy13994         94 LRHR   97 (97)
Q Consensus        94 ~~h~   97 (97)
                      ++|+
T Consensus        61 ~~~H   64 (66)
T 2drp_A           61 KIIH   64 (66)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8863

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.72  E-value=6.6e-18  Score=75.25  Aligned_cols=56  Identities=38%  Similarity=0.715  Sum_probs=43.3

Q ss_pred             CCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         21 GVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        21 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |++||.|++|++.|.....                     |..|++.|.+++||.|++|++.|.....|..|+++|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~---------------------l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYY---------------------LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHH---------------------HHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHH---------------------HHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4678889888777765555                     4556666788899999999999999999999999874

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.71  E-value=1.2e-17  Score=85.65  Aligned_cols=72  Identities=14%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             Ccccccccccccc------ChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHH
Q psy13994         23 KKFGCEYCSARFS------QKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        23 ~~~~C~~C~~~f~------~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l   89 (97)
                      +++.|++|++.|.      ....|..|+. ++       +.|++.|.....|..|+++|  ++||.|++|++.|.....|
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~~-h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l  116 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLLA-SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSA  116 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHHH-HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHH
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHHH-hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHH
Confidence            4456666665554      3444555543 33       46777777788888888888  7899999999999999999


Q ss_pred             HHHhhhcC
Q psy13994         90 RVHMLRHR   97 (97)
Q Consensus        90 ~~H~~~h~   97 (97)
                      ..|+++|+
T Consensus       117 ~~H~~~h~  124 (129)
T 2wbt_A          117 LDHVCKKH  124 (129)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
Confidence            99999874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=2e-17  Score=82.34  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHH-hccCCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQ-SHEGVK   72 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~-~h~~~~   72 (97)
                      +|++.|.....|..|++.|  ++||.|.+|++.|.....|..|+. +.       +.|++.|.....|..|++ .|.+++
T Consensus        21 ~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   97 (107)
T 1wjp_A           21 LCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNN   97 (107)
T ss_dssp             TTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCC
T ss_pred             CCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCC
Confidence            5899999999999999998  469999999999999999999996 65       579999999999999997 999999


Q ss_pred             Ccccc
Q psy13994         73 KFGCE   77 (97)
Q Consensus        73 ~~~C~   77 (97)
                      +|.+.
T Consensus        98 ~~~~~  102 (107)
T 1wjp_A           98 MAPTS  102 (107)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.71  E-value=8e-18  Score=80.64  Aligned_cols=60  Identities=23%  Similarity=0.428  Sum_probs=47.4

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHh-hh
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM-LR   95 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~   95 (97)
                      ..+...++|.|++|++.|..                     ...|..|+++|.+++||.|++|+++|.+...|..|+ ++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~---------------------~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFAS---------------------KGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKC   79 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESS---------------------HHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCc---------------------HHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCccc
Confidence            34556677888887766654                     455667777889999999999999999999999997 45


Q ss_pred             cC
Q psy13994         96 HR   97 (97)
Q Consensus        96 h~   97 (97)
                      |+
T Consensus        80 H~   81 (85)
T 2lv2_A           80 HP   81 (85)
T ss_dssp             CT
T ss_pred             Cc
Confidence            63

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.8e-17  Score=78.96  Aligned_cols=71  Identities=31%  Similarity=0.587  Sum_probs=65.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc---------cccCccccChHHHHHHHH-hccC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR---------DVCNKPYHRKSVLIAHLQ-SHEG   70 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~---------~~c~~~~~~~~~~~~h~~-~h~~   70 (97)
                      +|++.|.....|..|++.|.++++|.|++|++.|.....|..|++.+.         +.|++.|.....|..|++ .|.+
T Consensus        12 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           12 ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999999999999999886         369999999999999986 7876


Q ss_pred             C
Q psy13994         71 V   71 (97)
Q Consensus        71 ~   71 (97)
                      +
T Consensus        92 ~   92 (95)
T 2yt9_A           92 P   92 (95)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.2e-17  Score=77.34  Aligned_cols=58  Identities=28%  Similarity=0.355  Sum_probs=47.7

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .+.+++||.|.+|++.|.....|                     ..|++.|.++++|.|++|++.|.....|..|+++|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L---------------------~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h   60 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAAL---------------------RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF   60 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHH---------------------HHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHH---------------------HHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHH
Confidence            46788999999998887666554                     45566677889999999999999999999999876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=76.98  Aligned_cols=60  Identities=27%  Similarity=0.546  Sum_probs=48.5

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ..+.++++|.|.+|++.|.....|                     ..|++.|.++++|.|.+|++.|.....|..|+++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l---------------------~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNL---------------------ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH   68 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHH---------------------HHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             cccCCCCCeECCCCCceeCCHHHH---------------------HHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhc
Confidence            356788999999998877666655                     45555677889999999999999999999999987


Q ss_pred             C
Q psy13994         97 R   97 (97)
Q Consensus        97 ~   97 (97)
                      +
T Consensus        69 ~   69 (74)
T 2lce_A           69 S   69 (74)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=5.3e-17  Score=76.60  Aligned_cols=60  Identities=28%  Similarity=0.545  Sum_probs=47.4

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +|++++||.|.+|++.|.....|..|++.+...                  .++++|.|++|++.|.....|..|++.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~------------------~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET------------------VAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH------------------TTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc------------------CCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            378899999999998888777776665543321                  137899999999999999999999854

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.67  E-value=2.7e-16  Score=77.19  Aligned_cols=70  Identities=34%  Similarity=0.670  Sum_probs=65.1

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccc--cccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEG   70 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~   70 (97)
                      .|++.|.....|..|++.|.++++|.|.  .|++.|.....|..|++.+.       +.|++.|.....|..|++.|.+
T Consensus        22 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            3899999999999999999999999996  69999999999999999887       5799999999999999999864

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1e-16  Score=74.67  Aligned_cols=59  Identities=29%  Similarity=0.599  Sum_probs=49.0

Q ss_pred             hccCCCccccc--cccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         18 SHEGVKKFGCE--YCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        18 ~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ++.++++|.|+  .|++.|.....                     |..|++.|.++++|.|++|++.|.....|..|+++
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~---------------------l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDE---------------------LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHH---------------------HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             cCCCCCccCCcCCCCCCccCCHHH---------------------HHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            57789999997  48777765554                     55566667888999999999999999999999999


Q ss_pred             cC
Q psy13994         96 HR   97 (97)
Q Consensus        96 h~   97 (97)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            86

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.9e-16  Score=79.09  Aligned_cols=70  Identities=27%  Similarity=0.548  Sum_probs=65.4

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhccC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSHEG   70 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h~~   70 (97)
                      +|++.|.....|..|++.|.++++|.|.+|++.|.....|..|++.+.       +.|++.|.....|..|++.|..
T Consensus        14 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            489999999999999999999999999999999999999999999887       5799999999999999998753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.66  E-value=5.7e-17  Score=78.11  Aligned_cols=68  Identities=21%  Similarity=0.469  Sum_probs=63.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc------cccCccccChHHHHHHHHhc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR------DVCNKPYHRKSVLIAHLQSH   68 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~------~~c~~~~~~~~~~~~h~~~h   68 (97)
                      +|++.|.....|..|+++|.+++||.|++|++.|.....|..|++.++      +.|++.|.....|..|++..
T Consensus         8 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C            8 ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             TTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            589999999999999999999999999999999999999999999887      57999999999999998764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.6e-16  Score=74.01  Aligned_cols=59  Identities=24%  Similarity=0.515  Sum_probs=43.3

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .+.+++||.|.+|++.|.....|..|                     ++.|.++++|.|++|++.|.....|..|+++|+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H---------------------~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKH---------------------RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHH---------------------HTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHH---------------------HHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            45678899999998887766665554                     445666777777777777777777777777763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=78.06  Aligned_cols=62  Identities=23%  Similarity=0.355  Sum_probs=52.9

Q ss_pred             ccCCCccccccccccccChHHHHHHHHH-c---c-------cccCccccChHHHHHH-HHhccCCCCcccccch
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLR-H---R-------DVCNKPYHRKSVLIAH-LQSHEGVKKFGCEYCS   80 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~-~---~-------~~c~~~~~~~~~~~~h-~~~h~~~~~~~C~~C~   80 (97)
                      -.|++||.|..|++.|.....|..|++. +   .       +.|++.|.....|..| +++|.+++||.|.++.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            3578999999999999999999999874 6   2       4688999999999999 7889999999987754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.62  E-value=7.2e-16  Score=68.51  Aligned_cols=46  Identities=26%  Similarity=0.529  Sum_probs=37.5

Q ss_pred             CccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         52 NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        52 ~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++.|.....|..|++.|.+++||.|+.|++.|.....|..|+++|+
T Consensus         8 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            8 GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            3444455556667777888999999999999999999999999874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=2.9e-15  Score=71.70  Aligned_cols=46  Identities=26%  Similarity=0.548  Sum_probs=43.4

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHH
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      +|++.|.....|..|+++|++++||.|++|+++|.....|..|++.
T Consensus        33 ~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           33 VCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             TSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            5999999999999999999999999999999999999999999754

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.2e-15  Score=69.84  Aligned_cols=31  Identities=19%  Similarity=0.482  Sum_probs=25.8

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .+.++++|.|++|++.|.....|..|+++|+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   42 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHT   42 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcC
Confidence            3567788999999999999999999988774

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.5e-15  Score=66.02  Aligned_cols=54  Identities=28%  Similarity=0.554  Sum_probs=42.5

Q ss_pred             CccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHh-hhcC
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM-LRHR   97 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~   97 (97)
                      +||.|.+|++.|....                     .|..|++.|.+++||.|+.|++.|.....|..|+ ++|+
T Consensus         1 k~~~C~~C~~~f~~~~---------------------~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQE---------------------HLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHH---------------------HHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHH---------------------HHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            4677887776665544                     4556666778889999999999999999999996 5663

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=6.1e-19  Score=82.20  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=52.0

Q ss_pred             chHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-cccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994          9 KSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus         9 ~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      ...|..|+++|.+++||.|++|++.|.....|.. ..... +.|++.|.....|..|++.|.+++||.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4567789999999999999999999998877655 11101 4577777777777777777777777777665

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.54  E-value=7.2e-15  Score=65.20  Aligned_cols=48  Identities=38%  Similarity=0.695  Sum_probs=45.3

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|+++|.+++||.|++|++.|.....|..|++.++
T Consensus         9 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            9 YCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             TTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999998764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.4e-15  Score=76.43  Aligned_cols=77  Identities=16%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CcchhccCchHHHHHHhh--ccCCCccc-cccccccc--cChHHHHHHHHHcc-------cccCccccChHHHHHHHHhc
Q psy13994          1 VCNKQYHRKSVLIAHLQS--HEGVKKFG-CEYCSARF--SQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSH   68 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~--h~~~~~~~-C~~C~~~f--~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h   68 (97)
                      +|++.|.....|..|++.  |.+++++. |.+|++.|  .....|..|++.+.       +.|++.|.....|..|++.|
T Consensus        24 ~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           24 DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             SSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHT
T ss_pred             ccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHh
Confidence            589999999999999998  77777655 99999999  88999999988876       57999999999999999998


Q ss_pred             cCCCCcccc
Q psy13994         69 EGVKKFGCE   77 (97)
Q Consensus        69 ~~~~~~~C~   77 (97)
                      .......++
T Consensus       104 h~~~~~~~~  112 (115)
T 2dmi_A          104 KHYQKVSGP  112 (115)
T ss_dssp             TTTTCSCCC
T ss_pred             CCcccCCCC
Confidence            766655444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.52  E-value=1.4e-14  Score=64.25  Aligned_cols=48  Identities=27%  Similarity=0.590  Sum_probs=41.5

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|+++|.+++||.|++|++.|.....|..|++.++
T Consensus         6 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            6 ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             TTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            588899999999999999999999999999999888888888877654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.3e-14  Score=66.94  Aligned_cols=55  Identities=24%  Similarity=0.435  Sum_probs=50.2

Q ss_pred             CcchhccCchHHHHHHh-hccCCCcccccc--ccccccChHHHHHHHHHcc-------cccCccc
Q psy13994          1 VCNKQYHRKSVLIAHLQ-SHEGVKKFGCEY--CSARFSQKISCRVHMLRHR-------DVCNKPY   55 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~-------~~c~~~~   55 (97)
                      +|++.|.....|..|++ .|.+++||.|++  |++.|.....|..|++.|+       +.|++.|
T Consensus        14 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             TTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            48999999999999999 799999999999  9999999999999999887       4677766

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=3.4e-14  Score=66.22  Aligned_cols=47  Identities=28%  Similarity=0.598  Sum_probs=41.0

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      +|++.|.....|..|+++|.+++||.|.+|++.|.....|..|++.|
T Consensus        22 ~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A           22 RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH   68 (74)
T ss_dssp             TSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhc
Confidence            58999999999999999999999999999998888777776665544

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.4e-14  Score=65.89  Aligned_cols=48  Identities=33%  Similarity=0.593  Sum_probs=45.1

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|+++|.+++||.|++|++.|.....|..|++.|+
T Consensus        19 ~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           19 ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             SSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999988765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4e-14  Score=65.30  Aligned_cols=48  Identities=27%  Similarity=0.426  Sum_probs=43.6

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|+++|.+++||.|.+|++.|.....|..|++.++
T Consensus        14 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A           14 ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             SSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHh
Confidence            589999999999999999999999999999999988888888877655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.48  E-value=3.8e-14  Score=65.70  Aligned_cols=57  Identities=28%  Similarity=0.606  Sum_probs=45.4

Q ss_pred             ccCCCcccccc--ccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc--chhhccChHHHHHHhh
Q psy13994         19 HEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHML   94 (97)
Q Consensus        19 h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~   94 (97)
                      ....++|.|..  |++.|                     .....|..|++.|.+++||.|++  |++.|.....|..|++
T Consensus        12 ~~~~~~~~C~~~~C~k~f---------------------~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTY---------------------FKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCEECSSTTTCCEE---------------------SSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             ccccCceeCCCCCCcccc---------------------CCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            44567888876  66555                     45555667777788999999965  9999999999999998


Q ss_pred             hc
Q psy13994         95 RH   96 (97)
Q Consensus        95 ~h   96 (97)
                      +|
T Consensus        71 ~H   72 (72)
T 2epa_A           71 TH   72 (72)
T ss_dssp             TC
T ss_pred             cC
Confidence            87

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.7e-14  Score=60.87  Aligned_cols=44  Identities=34%  Similarity=0.510  Sum_probs=35.1

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSY---------------------LLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHH---------------------HHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            5678999999999998877765554                     5566667888999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2e-14  Score=61.17  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAH---------------------LIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHH---------------------HHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.8e-14  Score=61.28  Aligned_cols=45  Identities=29%  Similarity=0.429  Sum_probs=36.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|....                     .|..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQ---------------------SLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHH---------------------HHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHH---------------------HHHHHHHHhcCCCCCCCCCC
Confidence            3678899999999999987776555                     45566677888999999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2e-14  Score=61.14  Aligned_cols=45  Identities=29%  Similarity=0.426  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPC---------------------LLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHH---------------------HHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.47  E-value=1.9e-14  Score=61.27  Aligned_cols=44  Identities=32%  Similarity=0.407  Sum_probs=35.7

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRS---------------------ALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTT---------------------HHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHH---------------------HHHHHHHHcCCCCCCCCCCC
Confidence            678899999999999987776555                     45566677888999999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2e-14  Score=61.17  Aligned_cols=45  Identities=31%  Similarity=0.435  Sum_probs=36.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~---------------------~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNS---------------------HLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHH---------------------HHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHH---------------------HHHHHHHHcCCCCCCCCCCC
Confidence            3678899999999999987776555                     45566667889999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.47  E-value=2.2e-14  Score=61.03  Aligned_cols=45  Identities=33%  Similarity=0.475  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTH---------------------LIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHH---------------------HHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.3e-14  Score=60.96  Aligned_cols=45  Identities=31%  Similarity=0.435  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|....                     .|..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKS---------------------QLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHH---------------------HHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHH---------------------HHHHHHHHhCCCCCCCCCCC
Confidence            3678899999999999887776555                     45566667889999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.9e-14  Score=60.65  Aligned_cols=45  Identities=27%  Similarity=0.357  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSN---------------------LIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHH---------------------HHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            47788999999999998877765554                     5566667888999999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.8e-14  Score=61.30  Aligned_cols=45  Identities=29%  Similarity=0.386  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSH---------------------LARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHH---------------------HHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHH---------------------HHHHhhhcCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667889999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.47  E-value=2.2e-14  Score=61.06  Aligned_cols=45  Identities=29%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|....                     .|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNS---------------------QLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHH---------------------HHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHH---------------------HHHHHHHhcCCCCCCCCCCC
Confidence            3678899999999999887776555                     45566677889999999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=67.25  Aligned_cols=54  Identities=22%  Similarity=0.251  Sum_probs=41.0

Q ss_pred             ccccccccccccChHHHHHHHHH-cc---------------cccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLR-HR---------------DVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~-~~---------------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .+.|..|++.|.....|..|++. |.               +.|++.|.....|..|+++|.+++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            36677777777777777777765 43               24677888888888999999999999986

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.8e-14  Score=61.31  Aligned_cols=45  Identities=27%  Similarity=0.363  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSY---------------------LSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHH---------------------HHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHH---------------------HHHHHhhcCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.6e-14  Score=60.80  Aligned_cols=45  Identities=27%  Similarity=0.349  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRS---------------------RLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHH---------------------HHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHH---------------------HHHHHHHHcCCCCCCCCCCC
Confidence            3678899999999999987776555                     45566677889999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=5.6e-14  Score=61.79  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=37.7

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHH-hccCCCCcccccchhhccC
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQ-SHEGVKKFGCEYCSARFSQ   85 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~-~h~~~~~~~C~~C~~~f~~   85 (97)
                      .+.+++||.|++|++.|.....                     |..|++ +|.+++||.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDH---------------------LNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHH---------------------HHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHH---------------------HHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4678899999999887765555                     455554 6888999999999999986

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.3e-14  Score=60.95  Aligned_cols=44  Identities=34%  Similarity=0.408  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHI---------------------GLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHH---------------------HHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHH---------------------HHHHHHHHhCCCCCCCCCCC
Confidence            678899999999999887776555                     45566667888999999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.9e-14  Score=61.27  Aligned_cols=45  Identities=29%  Similarity=0.475  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSH---------------------LIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHH---------------------HHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHH---------------------HHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999877765555                     5566667888999999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.8e-14  Score=60.65  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSR---------------------LRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHH---------------------HHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999887

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.3e-14  Score=65.64  Aligned_cols=48  Identities=29%  Similarity=0.654  Sum_probs=45.0

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|++.|.....|..|++.|.+++||.|++|++.|.....|..|++.|+
T Consensus        26 ~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            399999999999999999999999999999999999999999988763

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.6e-14  Score=61.48  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=35.8

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKST---------------------LSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHH---------------------HHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            6788999999999999877765554                     5566667888999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.6e-14  Score=60.79  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHT---------------------HLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHH---------------------HHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChH---------------------HHHHHHHHcCCCCCCCCCCC
Confidence            3678899999999999887776555                     45566677889999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.3e-14  Score=60.99  Aligned_cols=45  Identities=31%  Similarity=0.496  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQ---------------------LISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHH---------------------HHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2e-14  Score=61.19  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSN---------------------LIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHH---------------------HHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999999877765555                     5566667888999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2e-14  Score=61.14  Aligned_cols=45  Identities=33%  Similarity=0.397  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSS---------------------LTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHH---------------------HHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            46788999999999999877765554                     5566667888999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3e-14  Score=60.58  Aligned_cols=45  Identities=29%  Similarity=0.488  Sum_probs=36.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAE---------------------LVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHH---------------------HHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.46  E-value=2e-14  Score=61.20  Aligned_cols=45  Identities=31%  Similarity=0.341  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~---------------------~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQAS---------------------SLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHH---------------------HHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHH---------------------HHHHHHHHcCCCCCcCCCCC
Confidence            3678899999999999887775554                     45566677889999999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.4e-14  Score=60.93  Aligned_cols=45  Identities=29%  Similarity=0.420  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSH---------------------LTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHH---------------------HHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHH---------------------HHHHHHHHCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.4e-14  Score=60.95  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=35.5

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLN---------------------LDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHH---------------------HHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            5778999999999998877765554                     5566667888999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.4e-14  Score=60.92  Aligned_cols=45  Identities=31%  Similarity=0.420  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSK---------------------LARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHH---------------------HHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999887

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.46  E-value=1.3e-16  Score=72.25  Aligned_cols=54  Identities=17%  Similarity=0.337  Sum_probs=43.9

Q ss_pred             HHHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHH
Q psy13994         13 IAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCR   90 (97)
Q Consensus        13 ~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~   90 (97)
                      ..|+++|.+++||.|++||+.|.....|                     .   +.|.+++||.|+.|++.|....++.
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l---------------------~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEAN---------------------Q---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHH---------------------H---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHh---------------------H---hhcCCCCCEECCCCCCccccCcccc
Confidence            4578889999999999999998754432                     2   5688999999999999998776543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.2e-14  Score=61.01  Aligned_cols=45  Identities=27%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSH---------------------LARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHH---------------------HHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            36778999999999999877765554                     5566667889999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3e-14  Score=60.59  Aligned_cols=45  Identities=29%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQ---------------------LIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHH---------------------HHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667888999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.46  E-value=2.1e-14  Score=61.09  Aligned_cols=45  Identities=42%  Similarity=0.627  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQ---------------------LIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHH---------------------HHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667889999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.9e-14  Score=60.66  Aligned_cols=44  Identities=36%  Similarity=0.565  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|....                     .|..|++.|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKS---------------------YLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHH---------------------HHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChH---------------------HHHHHHHHhCCCCCCCCCCC
Confidence            677899999999999887776554                     45566677888999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.3e-14  Score=61.02  Aligned_cols=45  Identities=27%  Similarity=0.321  Sum_probs=36.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSH---------------------LNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHH---------------------HHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.8e-14  Score=60.70  Aligned_cols=45  Identities=29%  Similarity=0.360  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|....                     .|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNS---------------------QLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHH---------------------HHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHH---------------------HHHHHHHHcCCCCCCCCCCC
Confidence            3678899999999999887776554                     45566777888999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.46  E-value=5e-15  Score=65.20  Aligned_cols=46  Identities=15%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             CccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         52 NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        52 ~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++.|.....|..|++.|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            4667788888999999999999999999999999999999999884

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=3.6e-14  Score=60.34  Aligned_cols=44  Identities=32%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQ---------------------CYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHH---------------------HHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            5778999999999999877765554                     5566667888999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.45  E-value=2.6e-14  Score=60.75  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASC---------------------LLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHH---------------------HHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999999877765555                     5556667888999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.6e-14  Score=60.81  Aligned_cols=44  Identities=30%  Similarity=0.382  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRD---------------------LYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHH---------------------HHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            6778999999999999877765554                     5566667888999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.4e-14  Score=60.44  Aligned_cols=45  Identities=36%  Similarity=0.504  Sum_probs=36.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQ---------------------LHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHH---------------------HHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            47788999999999999877765554                     5566667888999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=60.30  Aligned_cols=44  Identities=32%  Similarity=0.332  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVS---------------------LIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHH---------------------HHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            6778999999999999877765554                     5566667888999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.3e-14  Score=60.50  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSS---------------------CTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHH---------------------HHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            5778999999999998877765554                     5566667888999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.4e-14  Score=60.45  Aligned_cols=44  Identities=39%  Similarity=0.533  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSI---------------------LSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHH---------------------HHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            6778999999999999877765554                     5566667888999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.1e-14  Score=60.53  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISA---------------------LRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHH---------------------HHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            36788999999999998877765554                     5566667889999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.44  E-value=4.5e-14  Score=60.07  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=35.5

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLR---------------------LLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHH---------------------HHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            5678999999999999877765554                     5566667888999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=2.2e-14  Score=61.04  Aligned_cols=45  Identities=29%  Similarity=0.398  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH---------------------LARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHH---------------------HHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHH---------------------HHHHHHhcCCCCCCCCCCC
Confidence            36788999999999999877765555                     5556667888999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=2.7e-14  Score=60.73  Aligned_cols=44  Identities=27%  Similarity=0.429  Sum_probs=35.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFN---------------------LDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHH---------------------HHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHH---------------------HHHHHHhhCCCCCCCCCCC
Confidence            6788999999999998877765554                     5566667888999999887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.1e-13  Score=61.92  Aligned_cols=48  Identities=27%  Similarity=0.539  Sum_probs=43.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHH-HHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHM-LRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~-~~~~   48 (97)
                      +|++.|.....|..|+++|.+++||.|++|++.|.....|..|+ +.|.
T Consensus         7 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            7 VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             TTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999999999999997 4443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=8.4e-14  Score=68.72  Aligned_cols=49  Identities=14%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             cccCccccChHHHHHHHH-hc---cCCCCcccccchhhccChHHHHHH-hhhcC
Q psy13994         49 DVCNKPYHRKSVLIAHLQ-SH---EGVKKFGCEYCSARFSQKISCRVH-MLRHR   97 (97)
Q Consensus        49 ~~c~~~~~~~~~~~~h~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~   97 (97)
                      +.|++.|.....|..|++ .|   .+++||.|.+|+++|...+.|..| +++|+
T Consensus        22 ~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           22 KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence            479999999999999997 58   678999999999999999999999 78874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.6e-13  Score=67.12  Aligned_cols=47  Identities=19%  Similarity=0.390  Sum_probs=41.8

Q ss_pred             Ccchhc-cCchHHHHHHhhccCCCccccccccccccChHHHHHH-HHHcc
Q psy13994          1 VCNKQY-HRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVH-MLRHR   48 (97)
Q Consensus         1 ~C~~~f-~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h-~~~~~   48 (97)
                      +|++.| .....|..|+++| +++||.|.+|++.|.....|..| ++.|+
T Consensus        39 ~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           39 TCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             TTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            599999 9999999999999 99999999999999888888877 66554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.4e-14  Score=60.10  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLD---------------------LDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHH---------------------HHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHH---------------------HHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999877765554                     5566667888999999887

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=2.9e-14  Score=68.04  Aligned_cols=49  Identities=20%  Similarity=0.440  Sum_probs=44.7

Q ss_pred             cccCccccChHHHHHHHHhccCC----CCcccccchhhccChHHHHHHhhhcC
Q psy13994         49 DVCNKPYHRKSVLIAHLQSHEGV----KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        49 ~~c~~~~~~~~~~~~h~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.|++.|.....|..|++.+.++    ++|.|++|++.|.....|..|+++|+
T Consensus        19 ~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   71 (86)
T 1x6h_A           19 SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA   71 (86)
T ss_dssp             SSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHcc
Confidence            57999999999999999877665    79999999999999999999999874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=4.9e-14  Score=64.37  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=45.1

Q ss_pred             cCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc-cchhhccChHHHHHHhhhcC
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE-YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~   97 (97)
                      -+++||.|..|++.|. ...                     |..|+++ .+++||.|+ .|+++|...+.|..|+++|.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~---------------------L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDT---------------------IQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHH---------------------HHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCCeeccccCCccC-HHH---------------------HHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            4678899998887776 554                     4556666 778999999 99999999999999999873

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=6.1e-14  Score=59.84  Aligned_cols=44  Identities=34%  Similarity=0.440  Sum_probs=35.5

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHH-hccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQ-SHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~-~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|++|++.|.....                     |..|++ +|.+++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTS---------------------LIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHH---------------------HHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHH---------------------HHHHhHhhcCCCCCCCCCCC
Confidence            6788999999999999877766555                     455666 7888999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=5.3e-14  Score=59.82  Aligned_cols=45  Identities=27%  Similarity=0.442  Sum_probs=35.7

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSN---------------------LFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHH---------------------HHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            36788999999999999877765554                     5566667888999999865

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.3e-14  Score=60.96  Aligned_cols=45  Identities=29%  Similarity=0.464  Sum_probs=36.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .|+++|++++||.|++|++.|.....                     |..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVH---------------------LTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHH---------------------HHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHH---------------------HHHHHHHcCCCCCCCCCCC
Confidence            36788999999999999877765555                     4556667888999999987

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=2.4e-13  Score=61.94  Aligned_cols=48  Identities=27%  Similarity=0.557  Sum_probs=44.2

Q ss_pred             CcchhccCchHHHHHHhh-c-cCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQS-H-EGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~-h-~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|++. | .+++||.|++|++.|.....|..|++.++
T Consensus        15 ~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A           15 VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             TTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            589999999999999998 7 58999999999999999999999998765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.2e-13  Score=58.72  Aligned_cols=44  Identities=36%  Similarity=0.523  Sum_probs=35.1

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIH---------------------LASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHH---------------------HHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            6778999999999999877765554                     5566667888999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.40  E-value=1.6e-13  Score=65.24  Aligned_cols=46  Identities=28%  Similarity=0.508  Sum_probs=37.3

Q ss_pred             cCccccChHHHHHHHHhccCCCCccccc--chhhccChHHHHHHhhhc
Q psy13994         51 CNKPYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH   96 (97)
Q Consensus        51 c~~~~~~~~~~~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   96 (97)
                      |++.|.....|..|++.|.+++||.|+.  |++.|.....|..|+++|
T Consensus         9 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h   56 (85)
T 2j7j_A            9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH   56 (85)
T ss_dssp             CCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHh
Confidence            3444455555666777788899999988  999999999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5e-13  Score=64.89  Aligned_cols=49  Identities=20%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             cccCccccChHHHHHHHHh-ccCCCC--------cccccchhhccChHHHHHHhhhcC
Q psy13994         49 DVCNKPYHRKSVLIAHLQS-HEGVKK--------FGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        49 ~~c~~~~~~~~~~~~h~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.|++.|.....|..|++. |.++++        |.|++|++.|.....|..|+++|+
T Consensus        29 ~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~   86 (95)
T 2ej4_A           29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (95)
T ss_dssp             CCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC
Confidence            5799999999999999998 999888        999999999999999999999883

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.36  E-value=3e-13  Score=57.45  Aligned_cols=44  Identities=32%  Similarity=0.432  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQ---------------------LATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHH---------------------HHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.36  E-value=3.3e-13  Score=56.19  Aligned_cols=42  Identities=24%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      |+++|++++||.|++|++.|.....                     |..|+++|.+++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQ---------------------LISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHH---------------------HHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHH---------------------HHHHHHhcCCCCCCCCC
Confidence            5678999999999998877765555                     55566678888888874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-13  Score=67.37  Aligned_cols=48  Identities=19%  Similarity=0.375  Sum_probs=42.2

Q ss_pred             Ccchhcc-CchHHHHHHhhccC-CCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYH-RKSVLIAHLQSHEG-VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~-~~~~l~~h~~~h~~-~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|. ....|..|+++|.+ ++||.|.+|++.|.....|..|++.++
T Consensus        29 ~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           29 TCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             TTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            5899999 99999999999998 999999999999888887777766554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=2.9e-13  Score=57.49  Aligned_cols=43  Identities=35%  Similarity=0.495  Sum_probs=33.9

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSS---------------------LICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHH---------------------HHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHH---------------------HHHHHHhcCCCCCCCCCC
Confidence            6788999999999998877765554                     556666788889998864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.36  E-value=1.8e-13  Score=55.49  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |++.|.+++||.|+.|++.|.....|..|+++|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            5667899999999999999999999999999885

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.35  E-value=7.3e-13  Score=55.97  Aligned_cols=42  Identities=26%  Similarity=0.473  Sum_probs=34.0

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccch
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCS   80 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~   80 (97)
                      .|++++||.|.+|++.|....                     .|..|+++|.++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~---------------------~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKD---------------------RMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHH---------------------HHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHH---------------------HHHHHHHHccCCCCCCCcCCC
Confidence            578899999998887775544                     456677778999999999986

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.2e-13  Score=62.44  Aligned_cols=48  Identities=27%  Similarity=0.551  Sum_probs=43.2

Q ss_pred             CcchhccCchHHHHHHhhccC---CCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEG---VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~---~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|.....|..|+++|.+   +++|.|.+|++.|.....|..|++..+
T Consensus        12 ~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A           12 ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             SSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            589999999999999999986   899999999999999999998886544

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.3e-13  Score=56.94  Aligned_cols=44  Identities=34%  Similarity=0.526  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAH---------------------LAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHH---------------------HHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            36788999999999999877765554                     556666788889998864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.8e-13  Score=56.78  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|....                     .|..|+++|.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIG---------------------HLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHH---------------------HHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHH---------------------HHHHHHHHhCCCCCCCCCC
Confidence            677899999999999887776555                     4556666788889998863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.2e-13  Score=56.95  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSS---------------------LAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHH---------------------HHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            36788999999999999877765554                     556666788889998864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.7e-13  Score=57.14  Aligned_cols=44  Identities=30%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH---------------------LVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHH---------------------HHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHH---------------------HHHHHHhhCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.6e-13  Score=57.20  Aligned_cols=43  Identities=30%  Similarity=0.502  Sum_probs=34.0

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|++++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKST---------------------LIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHH---------------------HHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            6788999999999999877765554                     556666788889999864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=6.5e-13  Score=56.91  Aligned_cols=43  Identities=30%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchh
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSA   81 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~   81 (97)
                      .+.+++||.|.+|++.|....                     .|..|+++|.+++||.|++|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVY---------------------HLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHH---------------------HHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHH---------------------HHHHHHHhcCCCCCccCCCCCC
Confidence            356788999998887776555                     4556667788999999999986

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.8e-13  Score=56.73  Aligned_cols=44  Identities=27%  Similarity=0.392  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|....                     .|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKS---------------------QLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHH---------------------HHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHH---------------------HHHHHHHHhCCCCCCCCCC
Confidence            3678899999999999887776555                     4556666788889999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.1e-13  Score=56.70  Aligned_cols=43  Identities=30%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKST---------------------LSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHH---------------------HHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHH---------------------HHHHHhHhCCCCCCCCCC
Confidence            6788999999999999877765554                     556666788889998863

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.6e-13  Score=57.19  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      +++|.+++||.|.+|++.|.....|                     ..|+++|.+++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L---------------------~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRL---------------------TQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHH---------------------HHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHH---------------------HHHHHHcCCCCCCCCCCC
Confidence            4678899999999998877665554                     455556778899999887

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=57.00  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|++++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSK---------------------LARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHH---------------------HHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.7e-13  Score=56.77  Aligned_cols=44  Identities=34%  Similarity=0.520  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSN---------------------LIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHH---------------------HHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            36788999999999999877765554                     556666788889998864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.6e-13  Score=56.79  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQ---------------------LQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHH---------------------HHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHH---------------------HHHHHHhcCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.2e-13  Score=56.95  Aligned_cols=44  Identities=30%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSH---------------------LARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHH---------------------HHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhH---------------------HHHHhHhcCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.34  E-value=8.8e-13  Score=63.21  Aligned_cols=67  Identities=31%  Similarity=0.685  Sum_probs=63.2

Q ss_pred             cchhccCchHHHHHHhhccCCCccccc--cccccccChHHHHHHHHHcc-------cccCccccChHHHHHHHHhc
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR-------DVCNKPYHRKSVLIAHLQSH   68 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~-------~~c~~~~~~~~~~~~h~~~h   68 (97)
                      |++.|.....|..|++.|.+++||.|+  .|++.|.....|..|++.+.       +.|++.|.....|..|++.|
T Consensus        13 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             TCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            999999999999999999999999997  69999999999999999886       47999999999999999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.1e-13  Score=57.00  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      +++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSS---------------------LTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHH---------------------HHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHH---------------------HHHHHHHhCCCCCCCCCCC
Confidence            467889999999998877765554                     5566667888999999887

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.8e-13  Score=56.80  Aligned_cols=44  Identities=32%  Similarity=0.451  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSH---------------------LQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHH---------------------HHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.9e-13  Score=56.74  Aligned_cols=43  Identities=30%  Similarity=0.454  Sum_probs=33.8

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTN---------------------LIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHH---------------------HHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            6788999999999998877765554                     556666788889998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6e-13  Score=56.48  Aligned_cols=43  Identities=35%  Similarity=0.470  Sum_probs=33.8

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSS---------------------LTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHH---------------------HHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            6778999999999999877765554                     555666788889998864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=4.2e-13  Score=56.93  Aligned_cols=44  Identities=32%  Similarity=0.393  Sum_probs=34.4

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSH---------------------LNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHH---------------------HHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHH---------------------HHHHHHhcCCCCCcCCCC
Confidence            36788999999999999877765554                     556666788889998864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.33  E-value=7.8e-13  Score=61.18  Aligned_cols=46  Identities=37%  Similarity=0.727  Sum_probs=42.7

Q ss_pred             cchhccCchHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHc
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRH   47 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~   47 (97)
                      |++.|.....|..|+++|.+++||.|.+  |++.|.....|..|++.|
T Consensus        25 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            9999999999999999999999999965  999999999999998653

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=7.7e-13  Score=55.01  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      |+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNR---------------------LVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHH---------------------HHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHH---------------------HHHHHHHhCCCCCCCCC
Confidence            4678999999999999877765555                     45566667778888773

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.5e-13  Score=56.60  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAH---------------------LNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHH---------------------HHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            36788999999999999877765554                     556666788889998863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.5e-13  Score=56.60  Aligned_cols=44  Identities=36%  Similarity=0.528  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSH---------------------LHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHH---------------------HHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHH---------------------HHHHHHhcCCCCCCCCCC
Confidence            36788999999999999877765554                     555666788889998863

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.5e-13  Score=56.38  Aligned_cols=43  Identities=33%  Similarity=0.508  Sum_probs=33.7

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSG---------------------LHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHH---------------------HHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhH---------------------HHHHHHHcCCCCCCCCC
Confidence            36788999999999998877765554                     55566678888999886

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.4e-13  Score=56.60  Aligned_cols=44  Identities=27%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|....                     .|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHS---------------------NLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHH---------------------HHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHH---------------------HHHHHHHHhCCCCCCCCCC
Confidence            3678899999999999887776555                     4556666788889998863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.1e-13  Score=56.73  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSH---------------------LVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHH---------------------HHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHH---------------------HHHHHHhcCCCCCCCCCC
Confidence            5678999999999999877765554                     556666788889998864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.1e-13  Score=56.41  Aligned_cols=44  Identities=32%  Similarity=0.465  Sum_probs=34.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKAN---------------------LTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHH---------------------HHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=8.2e-13  Score=55.46  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSN---------------------LMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHH---------------------HHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhH---------------------HHHHHHHhCCCCCCCCC
Confidence            36788999999999999877766555                     45566667788888874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9.1e-13  Score=55.37  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNY---------------------LVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHH---------------------HHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHH---------------------HHHHhHhcCCCCCCCCC
Confidence            36788999999999999877765555                     55566667788888774

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.9e-13  Score=55.94  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQ---------------------LVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHH---------------------HHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHH---------------------HHHHHHHcCCCCCCCCC
Confidence            36788999999999999877765555                     45566667788888874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.1e-13  Score=55.67  Aligned_cols=43  Identities=28%  Similarity=0.447  Sum_probs=33.2

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSY---------------------LIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHH---------------------HHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHH---------------------HHHHhhhcCCCCCCCCC
Confidence            36788999999999988877765554                     55666678888888874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=3.4e-12  Score=59.76  Aligned_cols=49  Identities=20%  Similarity=0.543  Sum_probs=43.5

Q ss_pred             CcchhccCchHHHHHHh-hccCC-CccccccccccccChHHHHHHHHHccc
Q psy13994          1 VCNKQYHRKSVLIAHLQ-SHEGV-KKFGCEYCSARFSQKISCRVHMLRHRD   49 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~-~h~~~-~~~~C~~C~~~f~~~~~l~~h~~~~~~   49 (97)
                      +|++.|.....|..|++ .|.++ ++|.|++|++.|.....|..|++.++.
T Consensus        20 ~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           20 ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             TTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            58999999999999997 67764 899999999999999999999987653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.30  E-value=3.7e-12  Score=65.02  Aligned_cols=67  Identities=21%  Similarity=0.443  Sum_probs=58.1

Q ss_pred             hhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc-----cccCccccChHHHHHHHHhccCC
Q psy13994          4 KQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHEGV   71 (97)
Q Consensus         4 ~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~~~   71 (97)
                      ..|.....|..|+ .|++++||.|++|++.|.....|..|++.|.     +.|++.|.....|..|++.|.++
T Consensus        55 ~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           55 QLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             GGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            3445667777777 5888999999999999999999999999863     57999999999999999999875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.3e-13  Score=55.82  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT   34 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC
Confidence            3567899999999999999999999999999884

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.29  E-value=4.4e-13  Score=55.79  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA   34 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC
Confidence            4567899999999999999999999999999884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1e-12  Score=55.21  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKH---------------------LIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHH---------------------HHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHH---------------------HHHHHHHcCCCCCcCCC
Confidence            36788999999999999887765554                     55566678888888874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1e-12  Score=55.73  Aligned_cols=42  Identities=29%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccC-CCCcccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEG-VKKFGCE   77 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~-~~~~~C~   77 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+ ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKY---------------------LTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHH---------------------HHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHH---------------------HHHHHHHcCCCCCCCCCC
Confidence            6788999999999999877765555                     5556666788 8899886

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.29  E-value=1.5e-12  Score=54.14  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      |+++|.+++||.|++|++.|.....|                     ..|+++|.+++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l---------------------~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSL---------------------AVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHH---------------------HHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHH---------------------HHHhhhcCCCCCCCC
Confidence            56789999999999998887665554                     455566777788876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.4e-12  Score=53.22  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             hccCCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      .+.+++||+|++  |+++|.+.+.|..|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            367899999986  9999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.1e-12  Score=55.58  Aligned_cols=44  Identities=32%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .|+++|.+++||.|++|++.|.....                     |..|++.|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSS---------------------LTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHH---------------------HHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            36788999999999998877765554                     556666788889998863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.7e-13  Score=55.97  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=33.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|.+++||.|++|++.|.....|                     ..|+++|.+++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L---------------------~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHL---------------------AGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHH---------------------HHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHH---------------------HHHHHHhCCCCCCCCC
Confidence            367889999999999998777665554                     4555667778888886

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=55.49  Aligned_cols=42  Identities=33%  Similarity=0.526  Sum_probs=32.8

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHAS---------------------LTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHH---------------------HHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHH---------------------HHHHHHHhCCCCCCCCC
Confidence            5678999999999998877765554                     55666678888999886

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=59.49  Aligned_cols=46  Identities=13%  Similarity=0.205  Sum_probs=41.9

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccc-cccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCE-YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~-~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|++.|. .+.|..|+++ .+++||.|+ .|++.|.....|..|++.|.
T Consensus        15 ~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A           15 YCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             SSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             ccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhc
Confidence            5899999 9999999999 999999999 99999999999999988653

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.8e-13  Score=56.03  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA   36 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhc
Confidence            5678999999999999999999999999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.8e-13  Score=54.86  Aligned_cols=41  Identities=37%  Similarity=0.511  Sum_probs=31.0

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      |+++|.+++||.|++|++.|.....|.                     .|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~---------------------~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLR---------------------AHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHH---------------------HHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHH---------------------HHHHHcCCCCCCCC
Confidence            567899999999999988876666554                     55555677777776

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=6.1e-13  Score=55.39  Aligned_cols=34  Identities=29%  Similarity=0.550  Sum_probs=30.7

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC
Confidence            4567899999999999999999999999999874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.7e-13  Score=55.95  Aligned_cols=43  Identities=35%  Similarity=0.482  Sum_probs=33.0

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      .|+++|++++||.|.+|++.|.....|                     ..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L---------------------~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSL---------------------FKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHH---------------------HHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHH---------------------HHHHHHhCCCCCCCCC
Confidence            367889999999999998887666555                     4555567777888875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=54.51  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      |+++|.+++||.|++|++.|.....|                     ..|++.|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L---------------------~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTL---------------------KSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHH---------------------HHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHH---------------------HHHHHhcCCCCCCCC
Confidence            56789999999999998887666554                     455556777777776

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=54.22  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=32.4

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCE   77 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~   77 (97)
                      |+++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSL---------------------LIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHH---------------------HHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHH---------------------HHHHHHHHCCCCCCCCC
Confidence            5678899999999999877765554                     55566677888888874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.9e-13  Score=56.28  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT   36 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            5677999999999999999999999999999884

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.27  E-value=5.5e-13  Score=58.54  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=36.6

Q ss_pred             chhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHc
Q psy13994          3 NKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         3 ~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      ++.|.....|..|+++|.+++||.|.+|++.|.....|..|++.|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   47 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHh
Confidence            467888888999999999999999999998887777666555543

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=8.1e-13  Score=54.94  Aligned_cols=41  Identities=34%  Similarity=0.511  Sum_probs=31.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      |+++|.+++||.|++|++.|.....|                     ..|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L---------------------~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSL---------------------IVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHH---------------------HTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHH---------------------HHHHHHhCCCCCCCC
Confidence            67789999999999998887666554                     455556777888876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.3e-13  Score=55.86  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS   36 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC
Confidence            36678999999999999999999999999999884

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=6.9e-13  Score=55.75  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA   36 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcC
Confidence            5678999999999999999999999999999884

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5e-13  Score=55.60  Aligned_cols=34  Identities=38%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence            5667999999999999999999999999999884

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.8e-13  Score=55.93  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT   36 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC
Confidence            5678999999999999999999999999999884

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.1e-13  Score=56.07  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT   36 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhC
Confidence            6678999999999999999999999999999884

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.7e-13  Score=55.80  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT   36 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=8.5e-13  Score=55.97  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.++++|.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR   36 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC
Confidence            6678999999999999999999999999999884

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.26  E-value=1e-12  Score=55.75  Aligned_cols=34  Identities=35%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV   36 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.1e-12  Score=55.59  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS   36 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcC
Confidence            5678999999999999999999999999999884

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=7.6e-13  Score=56.16  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|.+|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT   36 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=55.54  Aligned_cols=34  Identities=35%  Similarity=0.522  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT   36 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence            5678999999999999999999999999999884

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=8.9e-14  Score=65.11  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             hHHHHHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHH
Q psy13994         10 SVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        10 ~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l   89 (97)
                      ..|..|++.+.+++|+.|..|++.|.                      ...|..|. .+.+++|+.|+.|++.|.. ..|
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~----------------------~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l   58 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS----------------------ILKLKEHE-DYCGARTELCGNCGRNVLV-KDL   58 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC----------------------HHHHHHHH-HHHHHCEEECSSSCCEEET-TGG
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh----------------------HHHHHHHH-hHcCCCceEcccCCCcCcH-HHH
Confidence            34667888899999999999988873                      33456677 6788899999999998874 788


Q ss_pred             HHHhhhcC
Q psy13994         90 RVHMLRHR   97 (97)
Q Consensus        90 ~~H~~~h~   97 (97)
                      ..|+++|.
T Consensus        59 ~~H~~~c~   66 (75)
T 2d9k_A           59 KTHPEVCG   66 (75)
T ss_dssp             GTHHHHBT
T ss_pred             HHHHHHcc
Confidence            89988763

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=55.78  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS   36 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC
Confidence            4567899999999999999999999999999884

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7.1e-13  Score=55.71  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA   34 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC
Confidence            4567899999999999999999999999999874

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.25  E-value=7.5e-13  Score=56.18  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT   36 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=55.55  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT   36 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.4e-13  Score=55.84  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS   36 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc
Confidence            6678999999999999999999999999999884

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=55.53  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT   36 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC
Confidence            5678999999999999999999999999999884

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-12  Score=55.65  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT   36 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC
Confidence            36678999999999999999999999999999884

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.1e-13  Score=55.89  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT   36 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            6678999999999999999999999999999884

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=55.15  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT   36 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.25  E-value=9e-13  Score=54.81  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   35 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS   35 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC
Confidence            4567899999999999999999999999999884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=55.75  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT   36 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC
Confidence            5677999999999999999999999999999884

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-12  Score=55.39  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.+.+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS   36 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.25  E-value=9.7e-13  Score=55.82  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT   36 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcC
Confidence            6678999999999999999999999999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-12  Score=55.65  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT   36 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=55.14  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT   36 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC
Confidence            5678999999999999999999999999999884

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=8.2e-13  Score=56.05  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT   36 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC
Confidence            5677899999999999999999999999999884

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=8e-13  Score=56.09  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT   36 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence            6678999999999999999999999999999874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=55.54  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT   36 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.24  E-value=1.1e-12  Score=55.56  Aligned_cols=34  Identities=38%  Similarity=0.586  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT   36 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhC
Confidence            6678999999999999999999999999999884

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.24  E-value=9e-13  Score=55.92  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT   36 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999874

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=55.15  Aligned_cols=35  Identities=34%  Similarity=0.521  Sum_probs=32.1

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT   36 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            36778999999999999999999999999999884

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-12  Score=55.42  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT   36 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC
Confidence            5677899999999999999999999999999884

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.4e-12  Score=55.30  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT   36 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=55.39  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT   36 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence            5678999999999999999999999999999884

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.5e-13  Score=56.01  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT   36 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999874

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-12  Score=55.68  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT   36 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcC
Confidence            6678999999999999999999999999999884

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=55.38  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT   36 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC
Confidence            6678999999999999999999999999999884

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.4e-12  Score=55.30  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT   36 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-12  Score=52.99  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             HhccCCCCcccccchhhccChHHHHHH-hhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVH-MLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~   97 (97)
                      ++|.+++||.|+.|++.|...+.|..| +++|+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            368899999999999999999999999 88874

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-12  Score=55.43  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM   36 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC
Confidence            5677999999999999999999999999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5e-13  Score=55.63  Aligned_cols=33  Identities=42%  Similarity=0.666  Sum_probs=30.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH   34 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHH
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHc
Confidence            456789999999999999999999999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.4e-12  Score=55.31  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT   36 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            5677999999999999999999999999999884

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=55.46  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT   36 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC
Confidence            5677999999999999999999999999999884

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=55.36  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT   36 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC
Confidence            5678999999999999999999999999999884

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-12  Score=52.63  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|.+++||.|.+|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            45889999999999999999999999999884

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=55.37  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT   36 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.23  E-value=1.5e-12  Score=55.21  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS   36 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=9.7e-13  Score=55.82  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=31.8

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT   36 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC
Confidence            36678999999999999999999999999999874

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-12  Score=54.73  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |++.|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA   36 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1e-12  Score=55.71  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS   36 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1e-12  Score=55.72  Aligned_cols=34  Identities=32%  Similarity=0.496  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT   36 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=54.61  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      .|+++|.+++||.|++|++.|.....|                     ..|+++|.+++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L---------------------~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHL---------------------TRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHH---------------------HTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHH---------------------HHHHHHhCCCCCCCC
Confidence            367889999999999998777665554                     455666777888877

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-12  Score=54.37  Aligned_cols=43  Identities=40%  Similarity=0.479  Sum_probs=33.6

Q ss_pred             HhhccCCCccccc--cccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccc
Q psy13994         16 LQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYC   79 (97)
Q Consensus        16 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C   79 (97)
                      .++|.+++||.|.  .|++.|....                     .|..|+++|.+++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~---------------------~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSD---------------------ELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHH---------------------HHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHH---------------------HHHHHHHHhCCCCCCCCCCC
Confidence            4678899999998  7877665544                     55666777889999999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=55.41  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT   36 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC
Confidence            6678999999999999999999999999999874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.2e-12  Score=55.50  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV   36 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.23  E-value=1.1e-12  Score=55.62  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT   36 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC
Confidence            6678999999999999999999999999999874

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-12  Score=55.57  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT   36 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999874

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.2e-12  Score=55.46  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT   36 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            5677899999999999999999999999999884

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1e-12  Score=55.74  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHA   36 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC
Confidence            5678999999999999999999999999999874

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.5e-12  Score=55.20  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=31.9

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT   36 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC
Confidence            36678999999999999999999999999999884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=51.68  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      ++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEAS---------------------LKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHH---------------------HHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHH---------------------HHHHHHhhCCCCCccCCC
Confidence            46889999999998877765554                     556666788889998864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.23  E-value=4.9e-12  Score=50.47  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=28.6

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|.+++||.|.+|++.|...+.|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3778999999999999999999999999885

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.8e-12  Score=54.92  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT   36 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC
Confidence            6678999999999999999999999999999884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=55.08  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS   36 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            4567899999999999999999999999999984

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8e-12  Score=52.92  Aligned_cols=42  Identities=29%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      +++|.+++||.|.+|++.|.....                     |..|++.|.+++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASN---------------------FIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHH---------------------HHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            467889999999998877765554                     556666788889998863

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=7.1e-13  Score=56.26  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=31.3

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|+++|.+++||.|++|+++|.+.+.|..|+++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH   35 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHH
Confidence            3667899999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=55.45  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT   36 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC
Confidence            5678999999999999999999999999999884

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=55.33  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT   36 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.6e-12  Score=55.09  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS   36 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC
Confidence            5677999999999999999999999999999884

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-12  Score=55.34  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT   36 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.22  E-value=4.9e-12  Score=50.41  Aligned_cols=30  Identities=23%  Similarity=0.525  Sum_probs=28.1

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+++||.|.+|++.|.+.+.|..|+++|+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            678999999999999999999999999884

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=55.09  Aligned_cols=34  Identities=35%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|.+|++.|.....|..|+++|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT   36 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC
Confidence            5667999999999999999999999999999884

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-12  Score=55.15  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.5

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM   36 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.4e-12  Score=52.99  Aligned_cols=41  Identities=27%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      |+++|.+++||.|.+|++.|.....|.                     .|+++|.+++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~---------------------~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLI---------------------VHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHH---------------------HHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHH---------------------HHHhHhcCCCCCCC
Confidence            678899999999999988876666554                     55556677777765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.5e-12  Score=55.24  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT   36 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC
Confidence            5677999999999999999999999999999874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.5e-12  Score=55.18  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT   36 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999884

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.21  E-value=2.2e-12  Score=54.70  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT   36 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            4567899999999999999999999999999984

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.3e-12  Score=55.49  Aligned_cols=33  Identities=30%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|.+.+.|..|+++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH   35 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc
Confidence            566789999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9.6e-13  Score=55.81  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH   35 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhc
Confidence            567899999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-12  Score=55.56  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS   36 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999873

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.6e-12  Score=55.08  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.+...|..|+++|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT   36 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.5e-12  Score=55.20  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT   36 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC
Confidence            5678999999999999999999999999999874

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.1e-12  Score=55.60  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|+++|.+++||.|++|++.|...+.|..|+++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH   35 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHc
Confidence            3667899999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.8e-12  Score=54.95  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM   36 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999874

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1e-12  Score=55.73  Aligned_cols=33  Identities=33%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH   35 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHH
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHh
Confidence            567899999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.9e-12  Score=54.48  Aligned_cols=34  Identities=29%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhh-hcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHML-RHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|++ +|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   37 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT   37 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcC
Confidence            5678999999999999999999999999999 874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.4e-12  Score=55.25  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|.+|++.|.....|..|+++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH   35 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc
Confidence            667899999999999999999999999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.5e-12  Score=53.17  Aligned_cols=42  Identities=31%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      .++|.+++||.|.+|++.|.....                     |..|+++|.+++||.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~---------------------L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGN---------------------LVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHH---------------------HHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHH---------------------HHHHHHHhCCCCCCCCCC
Confidence            457889999999999877765554                     556666788889998863

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.8e-12  Score=54.95  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=31.3

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT   36 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcC
Confidence            5677999999999999999999999999999874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.5e-12  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |++.|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA   36 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC
Confidence            4567889999999999999999999999999884

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-12  Score=55.68  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH   35 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHH
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhc
Confidence            567899999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.4e-13  Score=55.32  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT   36 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC
Confidence            5678999999999999999999999999999874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.3e-11  Score=54.07  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=33.7

Q ss_pred             CcchhccCchHHHHHHh-hccCCCccccccccccccC
Q psy13994          1 VCNKQYHRKSVLIAHLQ-SHEGVKKFGCEYCSARFSQ   36 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C~~~f~~   36 (97)
                      +|++.|.....|..|++ +|.+++||.|.+|++.|.+
T Consensus        17 ~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           17 SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            58999999999999997 8999999999999999975

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=6.5e-12  Score=50.43  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=28.8

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.+++||.|.+|++.|...+.|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            4778999999999999999999999999985

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8.2e-12  Score=50.13  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            4788999999999999999999999999884

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-12  Score=55.30  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+++|.+++||.|++|++.|...+.|..|+++|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT   36 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            5678999999999999999999999999999884

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.18  E-value=1e-11  Score=53.17  Aligned_cols=31  Identities=19%  Similarity=0.531  Sum_probs=28.2

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhh-hcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHML-RHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~   97 (97)
                      +|.+++||.|.+|++.|.....|..|++ +|+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4788999999999999999999999999 874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=9.7e-12  Score=51.35  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=28.6

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|.+++||.|++|++.|.....|..|+++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHT   34 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence            5788999999999999999999999999884

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.18  E-value=1.1e-11  Score=46.71  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999985

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1e-11  Score=49.78  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=28.8

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|.+++||.|++|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            4788999999999999999999999999884

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.17  E-value=1.4e-11  Score=46.29  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999986

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.2e-12  Score=54.69  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+++|.+++||.|++|++.|.....|..|+++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH   35 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHH
Confidence            456789999999999999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=2.3e-11  Score=50.17  Aligned_cols=39  Identities=28%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCccc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGC   76 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C   76 (97)
                      ++|.+++||.|++|++.|.....                     |..|+++|.+++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~---------------------L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGS---------------------LTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHH---------------------HHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHH---------------------HHHHHHHhCCCCCcCC
Confidence            46889999999999887766555                     4555566777788876

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.8e-11  Score=49.04  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=28.6

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.++++|.|++|++.|.....|..|+++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4778999999999999999999999999884

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.15  E-value=1.9e-11  Score=49.90  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=26.1

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+++||.|++|++.|...+.|..|+++|+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   30 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR   30 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC
Confidence            467889999999999999999999998874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=6.7e-12  Score=50.70  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             hccCCCCcccccchhhccCh-HHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQK-ISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~   97 (97)
                      +|.+++||.|++|++.|... +.|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            57889999999999999999 99999999873

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.12  E-value=2.1e-11  Score=49.13  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |+++|.+++||.|+.|++.|.....|..|++.+.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            6778999999999999999999999999988764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.2e-11  Score=52.33  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.|.+++||.|++|++.|.+...|..|+++|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHT   36 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC
Confidence            46889999999999999999999999999884

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3e-11  Score=48.41  Aligned_cols=31  Identities=39%  Similarity=0.600  Sum_probs=28.4

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.+++||.|+.|++.|.....|..|+++|+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            3678899999999999999999999999884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.5e-11  Score=50.66  Aligned_cols=31  Identities=32%  Similarity=0.602  Sum_probs=28.9

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.+++||.|+.|++.|.....|..|+++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTH   34 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhC
Confidence            5788999999999999999999999999884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.11  E-value=3.3e-11  Score=48.52  Aligned_cols=27  Identities=22%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhh
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ..+|+||.|++|+|+|.+.+.|..|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            568999999999999999999999973

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=51.30  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|.+++||.|.+|++.|.....|..|+++|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT   36 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTS
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhC
Confidence            46889999999999999999999999999884

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=4.5e-11  Score=54.44  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.+++||.|.+|++.|.+.+.|..|+++|+
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            677899999999999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.10  E-value=4.7e-11  Score=45.09  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=25.2

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=5.4e-11  Score=50.76  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSA   32 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~   32 (97)
                      +|++.|.....|..|+++|++++||.|.+|++
T Consensus        17 ~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           17 ICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             TTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            58999999999999999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.5e-11  Score=52.06  Aligned_cols=32  Identities=31%  Similarity=0.562  Sum_probs=29.4

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|.+++||.|++|++.|.....|..|+++|+
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHT   36 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            46889999999999999999999999999873

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=4.1e-11  Score=50.41  Aligned_cols=31  Identities=29%  Similarity=0.592  Sum_probs=29.0

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.+++||.|++|++.|.....|..|+++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   34 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD   34 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHcc
Confidence            5789999999999999999999999999884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.2e-11  Score=50.57  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|.+++||.|++|++.|.....|..|+++|+
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT   36 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhC
Confidence            46889999999999999999999999999884

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=1.6e-10  Score=52.76  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=22.4

Q ss_pred             ccCCCCccccc--chhhccChHHHHHHh-hhcC
Q psy13994         68 HEGVKKFGCEY--CSARFSQKISCRVHM-LRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~   97 (97)
                      ..++|||+|..  |+++|.+.+.|..|+ ++|+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT   54 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK   54 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC
Confidence            46778888854  888888888888886 5674

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-11  Score=45.04  Aligned_cols=26  Identities=35%  Similarity=0.634  Sum_probs=24.3

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|++.|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999885

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.01  E-value=1.6e-10  Score=45.48  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=24.3

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|++.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            58999999999999999999999884

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=99.00  E-value=1e-10  Score=47.15  Aligned_cols=30  Identities=20%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             ccCCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+++||.|.+  |++.|...+.|..|+++|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            67899999984  9999999999999999873

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.00  E-value=1.9e-10  Score=43.85  Aligned_cols=27  Identities=33%  Similarity=0.710  Sum_probs=25.1

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            579999999999999999999999884

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=46.42  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=27.5

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++|.+++||.|.+|++.|.....|..|++.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            56889999999999999998888888877654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=46.71  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             hhccCCCccccccccccccChHHHHHH-HHHcc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVH-MLRHR   48 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h-~~~~~   48 (97)
                      ++|.+++||.|+.|++.|.....|..| ++.|.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            568899999999999999999999999 77664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=1.4e-10  Score=46.92  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=26.7

Q ss_pred             ccCCCCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+++||.|.  .|++.|...+.|..|+++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            5678999999  59999999999999998873

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.96  E-value=4.5e-10  Score=43.62  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=25.1

Q ss_pred             CCCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|.  .|+++|...+.|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5799999  89999999999999999985

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.3e-10  Score=49.43  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             HHhccCCCCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         65 LQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        65 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .++|.+++||.|.  .|++.|.....|..|+++|+
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   38 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS   38 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC
Confidence            3568899999998  89999999999999999884

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.94  E-value=3.1e-10  Score=43.00  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=24.2

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|+.|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            58999999999999999999999884

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.93  E-value=5.6e-10  Score=41.59  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=22.8

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ||.|.+|++.|...+.|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6899999999999999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.93  E-value=4.9e-10  Score=42.39  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=24.1

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|+.|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            58999999999999999999999874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.93  E-value=5.2e-11  Score=50.64  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             HHHHhccCCCCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|...|.+++||.|.  .|+++|...+.|..|+++|+
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            344568999999995  79999999999999999985

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.93  E-value=8.8e-10  Score=43.57  Aligned_cols=31  Identities=23%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|.+++||.|.+|++.|.....|..|++.++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            3678999999999999999888888877654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-10  Score=44.51  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=24.8

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++||.|+.|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            478999999999999999999999874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-09  Score=44.54  Aligned_cols=31  Identities=19%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             hccCCCcccccc--ccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      .+.+++||.|+.  |+++|.....|..|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            357899999986  9999999999999988875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.91  E-value=8.7e-10  Score=43.65  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=26.5

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|.+++||.|.+|++.|.....|..|++.++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3778999999999999999888888877654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=2.4e-09  Score=48.89  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             ccCCCcccccc--ccccccChHHHHHHHHHcccccCccccChHHHHHHH-HhccCCCCccccc
Q psy13994         19 HEGVKKFGCEY--CSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHL-QSHEGVKKFGCEY   78 (97)
Q Consensus        19 h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~-~~h~~~~~~~C~~   78 (97)
                      ..+++||.|..  |+++|..                     ...|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr---------------------~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTI---------------------QQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSS---------------------HHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcC---------------------HHHHHHHhhhhCCCCCCccccc
Confidence            56899999974  7766654                     45566665 5788999988854

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=1.7e-10  Score=43.87  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|+.|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            58999999999999999999999884

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.89  E-value=9.1e-10  Score=42.42  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=24.0

Q ss_pred             CCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|+  .|+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            589998  99999999999999999985

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.4e-09  Score=43.32  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=27.6

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+++||.|.+|++.|.....|..|++.|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            5788999999999999999999999988764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=43.94  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=27.9

Q ss_pred             hhccCCCccccccccccccCh-HHHHHHHHHcc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQK-ISCRVHMLRHR   48 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~-~~l~~h~~~~~   48 (97)
                      ++|.+++||.|++|++.|... ..|..|++.|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            468899999999999999998 99998887664

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.87  E-value=9.5e-10  Score=41.81  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            57999999999999999999999874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.87  E-value=5.5e-10  Score=42.20  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=23.9

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|++.|.....|..|+++|+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            58999999999999999999999873

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.8e-09  Score=42.90  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=27.4

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+++||.|.+|++.|.....|..|++.|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5788999999999999999999998888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.86  E-value=1.3e-09  Score=46.38  Aligned_cols=31  Identities=19%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             hccCCCccccccccccccChHHHHHHHH-Hcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHML-RHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~   48 (97)
                      +|++++||.|.+|++.|.....|..|++ .|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4789999999999999999999999988 665

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=5.4e-10  Score=42.19  Aligned_cols=25  Identities=28%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             CCcccccchhhccChHHHHHHhhhc
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      +||.|+.|+++|...+.|..|+++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHh
Confidence            5899999999999999999999987

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=43.28  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=27.1

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+++||.|.+|++.|.....|..|++.|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            5778999999999999999999998887654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.84  E-value=1.6e-09  Score=41.25  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=23.7

Q ss_pred             CCcccccchhhccChHHHHHH-hhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVH-MLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H-~~~h~   97 (97)
                      +||.|+.|++.|.+.+.|..| +++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            589999999999999999999 78874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.83  E-value=8.7e-11  Score=45.89  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=24.2

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|+++|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            58999999999999999999999885

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.5e-09  Score=42.06  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=27.2

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+++||.|++|++.|.....|..|++.++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4778999999999999999999998888764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.82  E-value=1.8e-09  Score=40.75  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=24.1

Q ss_pred             CCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|.  .|++.|...+.|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.81  E-value=2.9e-09  Score=43.16  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=18.8

Q ss_pred             ccCCCccccccccccccChHHHHHHHH
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      |++++||.|.+|++.|.....|..|++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHH
Confidence            567899999998887766665544433

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.2e-12  Score=60.53  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        49 ~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.|++.|.....|..       +++|.|+.|++.|.....|..|+++|+
T Consensus        22 ~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A           22 SKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             SSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             CcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            579999988777765       789999999999999999999998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.78  E-value=3.7e-09  Score=42.40  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.6

Q ss_pred             ccCCCccccccccccccChHHHHHHH
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHM   44 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~   44 (97)
                      +.+++||.|++||++|...+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46899999999999999999999886

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.78  E-value=5.6e-09  Score=38.78  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|..||+.|.....|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999998763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=6.4e-09  Score=41.32  Aligned_cols=31  Identities=39%  Similarity=0.600  Sum_probs=26.9

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|.+++||.|+.|++.|.....|..|++.|.
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            4678899999999999999999998888764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.73  E-value=4.8e-09  Score=39.07  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=23.5

Q ss_pred             CCccccccccccccChHHHHHHHHHc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      ++||.|++||+.|.....|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            47899999999999999999998765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=3.3e-10  Score=54.43  Aligned_cols=33  Identities=12%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         16 LQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        16 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .++|.+++||.|++|++.|.....|..|++.|+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht   49 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN   49 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC
Confidence            456889999999999999888777777766554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=2.4e-09  Score=51.38  Aligned_cols=31  Identities=13%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ++|.+++||.|++|++.|.....|..|+++|
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~H   48 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIH   48 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHh
Confidence            3466666666766777776666666666655

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.6e-08  Score=45.97  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHccc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHRD   49 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   49 (97)
                      .+.+++||.|.+|++.|.....|..|+++|+.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            36678999999999999999999999988874

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.66  E-value=1.3e-08  Score=38.01  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=23.7

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|++|++.|.....|..|++.++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999987653

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.62  E-value=2.6e-08  Score=39.81  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=26.0

Q ss_pred             hccCCCcccccc--ccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|++++||.|.+  |++.|.....|..|++.|+
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            367899999984  9999999999888887664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=2.6e-08  Score=39.93  Aligned_cols=29  Identities=31%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             ccCCCccccc--cccccccChHHHHHHHHHc
Q psy13994         19 HEGVKKFGCE--YCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        19 h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~   47 (97)
                      |++++||.|.  .|++.|.....|..|++.|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   31 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHh
Confidence            5678999999  5888887777766665543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.60  E-value=3.6e-08  Score=38.40  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=14.4

Q ss_pred             CccccccccccccChHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      +||.|++|++.|.....|..|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcccCCCCCchhCCHHHHHHHHH
Confidence            46788877777665555444433

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.59  E-value=2.8e-09  Score=45.11  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             HHHhhccCCCccccc--cccccccChHHHHHHHHHcc
Q psy13994         14 AHLQSHEGVKKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|...|.+++||.|.  .|++.|.....|..|++.|+
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            445669999999995  79999999998888887764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.59  E-value=4.2e-09  Score=47.20  Aligned_cols=37  Identities=16%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHH
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISC   40 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l   40 (97)
                      +|++.|.....|.   ++|.+++||.|++||+.|....++
T Consensus        19 ~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           19 VCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             CCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            5899998877775   789999999999999999876643

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=3.6e-08  Score=37.16  Aligned_cols=27  Identities=33%  Similarity=0.710  Sum_probs=22.8

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|..|++.|.....|..|++.+.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            468999999999999998888887654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=7.9e-09  Score=38.01  Aligned_cols=25  Identities=36%  Similarity=0.663  Sum_probs=22.3

Q ss_pred             CccccccccccccChHHHHHHHHHc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      +||.|++||+.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4899999999999999999998765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.54  E-value=7e-08  Score=36.08  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=21.9

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|++|++.|.....|..|++.|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47899999999999888888887654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.54  E-value=4.8e-08  Score=36.59  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=21.9

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+.|++.|.....|..|++.|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            57899999999999888888887654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.49  E-value=1.2e-07  Score=36.41  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CCccccc--cccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4689998  89999988888888887664

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=7.8e-08  Score=35.87  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+.|++.|.....|..|++.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57899999999999888888887654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.46  E-value=8.4e-08  Score=35.30  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=20.3

Q ss_pred             ccccccccccccChHHHHHHHHHcc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ||.|.+|++.|.....|..|++.++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5789999999999888888887654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=35.48  Aligned_cols=26  Identities=19%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|.+|++.|.....|..|++.|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            47899999999998888888887653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=1.6e-07  Score=35.26  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=21.3

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|.+|++.|.....|..|++.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47899999999988888888877654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.78  E-value=3e-08  Score=37.44  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|..|++.|.....|..|++.++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            368999999999999888888877654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.76  E-value=3.5e-08  Score=37.07  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|.+|++.|.....|..|++.|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            47899999999998888888877654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.39  E-value=1.9e-07  Score=35.54  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=20.5

Q ss_pred             Cccccc--cccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+  .||+.|.....|..|++.|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            478887  89888888888888877654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.32  E-value=3.7e-07  Score=33.97  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             Cccccc--cccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|.  .|++.|.....|..|++.|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            478899  99999999999999988764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.30  E-value=2.6e-07  Score=34.73  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=20.3

Q ss_pred             CccccccccccccChHHHHHH-HHHc
Q psy13994         23 KKFGCEYCSARFSQKISCRVH-MLRH   47 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h-~~~~   47 (97)
                      +||.|..|++.|.....|..| ++.|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H   26 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIH   26 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTS
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHc
Confidence            478999999999988888888 4544

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=1.2e-07  Score=44.06  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .|++.| ..+.|..|+ .+.+++|+.|+.|++.|. ...|..|++.+.
T Consensus        22 ~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A           22 HCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             SSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             ccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            377888 478999999 899999999999999877 477888877554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.22  E-value=3.2e-06  Score=38.01  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=39.3

Q ss_pred             cchhccCchHHHHHH-hhccCCC------ccccc--cccccccChHHHHHHHHHc
Q psy13994          2 CNKQYHRKSVLIAHL-QSHEGVK------KFGCE--YCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         2 C~~~f~~~~~l~~h~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~h~~~~   47 (97)
                      |++.|.....|..|+ ..|.+.+      +|.|.  .|+..+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            889999999999998 4787765      79996  7999998889999998764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.22  E-value=2.6e-07  Score=46.71  Aligned_cols=30  Identities=17%  Similarity=0.296  Sum_probs=27.4

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ..++|++||.|..|++.|.+.+.|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            347889999999999999999999999876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.21  E-value=2.2e-08  Score=38.77  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=15.6

Q ss_pred             CccccccccccccChHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      +||.|.+|++.|.....|..|++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~   23 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK   23 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            47888888887766665554443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.20  E-value=3.4e-06  Score=37.93  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             ccCccccChHHHHHHH-HhccCCC------Ccccc--cchhhccChHHHHHHhhhc
Q psy13994         50 VCNKPYHRKSVLIAHL-QSHEGVK------KFGCE--YCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        50 ~c~~~~~~~~~~~~h~-~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~h   96 (97)
                      .|++.|.....|..|+ ..|.+.+      +|.|.  .|+..+.....|..|++..
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4677777777777776 4676554      79995  7999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.92  E-value=6.6e-06  Score=41.95  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=48.8

Q ss_pred             CCccccccccccccChHHHHHHH--HHccc-------cc-------CccccChHHHHHHHHhccCCCCcccccchhhccC
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHM--LRHRD-------VC-------NKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQ   85 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~--~~~~~-------~c-------~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~   85 (97)
                      .+++.|.+|...|.+...+..|.  +.|..       .+       ++.+....    +...+.+.+.|-|..|++.|..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSS
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCC
Confidence            46789999999999999999998  44431       11       11111110    1123455678899999999999


Q ss_pred             hHHHHHHhh
Q psy13994         86 KISCRVHML   94 (97)
Q Consensus        86 ~~~l~~H~~   94 (97)
                      ...+..|..
T Consensus       106 ~~~~~~H~~  114 (127)
T 1zu1_A          106 PVVAESHYI  114 (127)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999999975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.76  E-value=4.1e-06  Score=42.37  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=26.9

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      .++|++||.|..|++.|.....|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            477889999999999999999999998754

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=5.9e-05  Score=31.40  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             CCcccccchhhccChHHHHHHhh
Q psy13994         72 KKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .+|.|+.|+..|.....|+.|++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            57899999999999999999986

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.0015  Score=27.25  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             CccccccccccccChHHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      .++.|+.|+..|.....|..||..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            578999999999999999999874

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.22  E-value=0.0024  Score=24.82  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .|.|++|.+.|.....|..|-..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            38899999999999999999764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.11  E-value=0.0088  Score=30.38  Aligned_cols=24  Identities=21%  Similarity=0.492  Sum_probs=18.1

Q ss_pred             CCccccccccccccChHHHHHHHH
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      ...+.|.+|...|.+...+..|..
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHC
Confidence            345678888888888888888764

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=95.73  E-value=0.0089  Score=23.40  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             CCCcccccchhhccChHHHHHHhh
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ..++.|..|+.+|.....+..|++
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            356789999999999999999986

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.66  E-value=0.012  Score=25.21  Aligned_cols=22  Identities=27%  Similarity=0.717  Sum_probs=19.5

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      -.|..|+..|...-.++.|+-+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccccccCcccccccchhhhhcc
Confidence            5899999999999999999754

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=93.54  E-value=0.039  Score=30.36  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=22.7

Q ss_pred             CCCcccccchhhccC-hHHHHHHhhhc
Q psy13994         71 VKKFGCEYCSARFSQ-KISCRVHMLRH   96 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~-~~~l~~H~~~h   96 (97)
                      ..|.+|..|+..|.+ ...|+.|+..|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            458999999999987 99999998764

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.66  E-value=0.066  Score=20.28  Aligned_cols=21  Identities=19%  Similarity=0.559  Sum_probs=18.5

Q ss_pred             ccccchhhccChHHHHHHhhh
Q psy13994         75 GCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        75 ~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .|.+|.+.|+.-.+|..|++-
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999874

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=92.26  E-value=0.086  Score=19.46  Aligned_cols=22  Identities=18%  Similarity=0.519  Sum_probs=19.1

Q ss_pred             CcccccchhhccChHHHHHHhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .+.|++|.........|+.|-.
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            4789999999999999998864

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=92.15  E-value=0.047  Score=29.47  Aligned_cols=39  Identities=18%  Similarity=0.434  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhccCCC-------CcccccchhhccChHHHHHHhhhcC
Q psy13994         58 KSVLIAHLQSHEGVK-------KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        58 ~~~~~~h~~~h~~~~-------~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ...|..|.....-..       =|+|..||| +....++..|++.|.
T Consensus       132 GgrlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          132 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHcC
Confidence            456777776542211       279999998 677788999999873

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=90.98  E-value=0.11  Score=24.68  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=13.1

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      -..|-+||+.|..   |..|+.+
T Consensus        21 ~iiClecGK~fK~---LkRHL~~   40 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTT   40 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHH
T ss_pred             ceEecccchhhHH---HHHHHHH
Confidence            3567777777763   5577766

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=90.91  E-value=0.07  Score=21.33  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=17.3

Q ss_pred             CCcccccchhhccChHHHHHHhh
Q psy13994         72 KKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ..+.|+.|++.+.. ..++.|.-
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D   29 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMD   29 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhh
Confidence            46889999999887 56678764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.61  E-value=0.67  Score=24.42  Aligned_cols=71  Identities=17%  Similarity=0.337  Sum_probs=48.2

Q ss_pred             Ccccc--ccccccccChHHHHHHHHHcc------cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhh
Q psy13994         23 KKFGC--EYCSARFSQKISCRVHMLRHR------DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        23 ~~~~C--~~C~~~f~~~~~l~~h~~~~~------~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ....|  ..|+..+. ...+..|+..=.      +.|+..+ ....+..|....-..++..|+.|+..+.. ..|..|+.
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~  157 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQ  157 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHT
T ss_pred             cccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHH
Confidence            44566  46776655 445677763211      4566666 35678889877777788889999987765 47788987


Q ss_pred             hc
Q psy13994         95 RH   96 (97)
Q Consensus        95 ~h   96 (97)
                      .+
T Consensus       158 ~~  159 (170)
T 3hcs_A          158 NC  159 (170)
T ss_dssp             TC
T ss_pred             hC
Confidence            64

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.22  E-value=0.25  Score=26.08  Aligned_cols=66  Identities=20%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             ccccccccccCh-----HHHHHHHHHcc-----cccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhh
Q psy13994         26 GCEYCSARFSQK-----ISCRVHMLRHR-----DVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        26 ~C~~C~~~f~~~-----~~l~~h~~~~~-----~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .|+.|...+...     ..+..-+..-.     ..|+.... ...+..|.. .-.-.+..|+.|+..+ ....|..|+.
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~  130 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHIL  130 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhh
Confidence            688887666543     12222222111     23444443 445667763 3334567788888877 4456777764

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=88.49  E-value=0.36  Score=24.37  Aligned_cols=26  Identities=19%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             CCCCcccccchhhccChHHHHHHhhh
Q psy13994         70 GVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .+.+..|-+|...|.....+..|++.
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~   37 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKL   37 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHH
Confidence            34578899999999999999999876

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=88.31  E-value=0.18  Score=27.74  Aligned_cols=12  Identities=25%  Similarity=0.359  Sum_probs=8.7

Q ss_pred             Cccccccccccc
Q psy13994         23 KKFGCEYCSARF   34 (97)
Q Consensus        23 ~~~~C~~C~~~f   34 (97)
                      .-|.|.+||..+
T Consensus       170 ~~~~C~~CG~i~  181 (202)
T 1yuz_A          170 KFHLCPICGYIH  181 (202)
T ss_dssp             CEEECSSSCCEE
T ss_pred             cEEEECCCCCEE
Confidence            458888888664

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=87.68  E-value=0.45  Score=26.26  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             CCccccccccccccC-hHHHHHHHHHc
Q psy13994         22 VKKFGCEYCSARFSQ-KISCRVHMLRH   47 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~-~~~l~~h~~~~   47 (97)
                      ..|..|..|+..|.. -..|+.|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            457899999999976 78888887653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.42  E-value=0.51  Score=22.40  Aligned_cols=52  Identities=21%  Similarity=0.508  Sum_probs=32.8

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhc-cCCCCccccc--chhh
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSH-EGVKKFGCEY--CSAR   82 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h-~~~~~~~C~~--C~~~   82 (97)
                      ...+.|++|...|..+..        .+.||..|..... ..+.... .....+.|++  |...
T Consensus         5 ~~~~~CPI~~~~~~dPV~--------~~~cGh~f~r~cI-~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVK--------NKVCGHTYEEDAI-VRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEE--------ESSSCCEEEHHHH-HHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCCEE--------cCCCCCeecHHHH-HHHHHHccCcCCCCCCCcCcCccc
Confidence            346889999888765432        1258888885544 3444333 2335678999  8654

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.74  E-value=0.3  Score=22.54  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=18.2

Q ss_pred             Ccccccchhhcc-------ChHHHHHHhhhc
Q psy13994         73 KFGCEYCSARFS-------QKISCRVHMLRH   96 (97)
Q Consensus        73 ~~~C~~C~~~f~-------~~~~l~~H~~~h   96 (97)
                      .-.|..|++.+.       --+.|.+|++..
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~   58 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSM   58 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHT
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHH
Confidence            346999999887       246899998764

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.10  E-value=0.59  Score=21.70  Aligned_cols=19  Identities=21%  Similarity=0.473  Sum_probs=11.4

Q ss_pred             ccccccccccccChHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVH   43 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h   43 (97)
                      .|.|..||.++.-+. +..|
T Consensus        10 ~F~C~~Cgd~lKK~k-v~~H   28 (79)
T 1wjv_A           10 FFTCNACGESVKKIQ-VEKH   28 (79)
T ss_dssp             EEEESSSCCEEETTH-HHHH
T ss_pred             EEEcCCCCCeeeccc-chhH
Confidence            377888887665433 4444

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.45  E-value=1.1  Score=20.35  Aligned_cols=55  Identities=15%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccC
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQ   85 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~   85 (97)
                      +..+.|.+|...+....         .-.|+-.|-..-....-...........|+.|...+..
T Consensus        17 ~~~~~C~IC~~~~~~p~---------~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPL---------SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCB---------CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCce---------eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            34578999988876532         12588888765443322221122346789999887664

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.13  E-value=0.34  Score=23.78  Aligned_cols=13  Identities=31%  Similarity=0.687  Sum_probs=11.5

Q ss_pred             CCCcccccchhhc
Q psy13994         71 VKKFGCEYCSARF   83 (97)
Q Consensus        71 ~~~~~C~~C~~~f   83 (97)
                      ..||+|..||..|
T Consensus        65 v~p~~C~~CG~~F   77 (105)
T 2gmg_A           65 IKPAQCRKCGFVF   77 (105)
T ss_dssp             ECCCBBTTTCCBC
T ss_pred             EECcChhhCcCee
Confidence            3589999999999

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=80.44  E-value=2  Score=21.65  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=25.0

Q ss_pred             CCCccccccccccccChHHHHHHHHHcc
Q psy13994         21 GVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        21 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++.+..|-.|...|.....+..|++..+
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhc
Confidence            4567899999999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.78
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.7
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.67
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.66
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.66
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.65
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.63
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.57
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.56
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.47
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.46
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.46
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.46
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.45
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.4
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.38
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.33
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.31
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.31
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.26
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.25
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.24
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.22
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.17
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.13
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.1
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.09
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.06
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.01
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.93
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.87
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.86
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.84
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.81
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.78
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.68
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.63
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.59
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.54
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.52
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.52
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.5
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.39
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.33
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.29
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.24
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.22
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.13
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.03
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.98
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.92
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.87
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.84
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.82
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.77
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.77
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.76
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.73
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.73
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.7
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.67
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.66
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.65
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.65
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.64
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.58
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.51
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.41
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.32
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.27
d1y0jb1	36	U-shaped transcription factor, different fingers {	97.26
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.22
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.17
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.04
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.91
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.9
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.89
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.85
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	96.84
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.65
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.54
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.47
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.06
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.3
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.25
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	94.86
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.33
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.02
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.17
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	93.04
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	92.9
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.63
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.97
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	91.29
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.24
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	90.9
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.63
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	88.11
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	87.97
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	81.86
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	80.4

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.8e-20  Score=79.09  Aligned_cols=53  Identities=32%  Similarity=0.641  Sum_probs=45.3

Q ss_pred             CCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHHhccCCCCcccccchhhccChHHHHHHhhhc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+||.|. ||++|...                     ..|..|+++|.+++||.|.+||++|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~---------------------~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHK---------------------SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSH---------------------HHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCH---------------------HHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5788884 88776544                     45667778899999999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.2e-18  Score=73.07  Aligned_cols=47  Identities=32%  Similarity=0.605  Sum_probs=44.7

Q ss_pred             CcchhccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      +||+.|.....|..|+++|++++||.|.+||++|...+.|..|+++|
T Consensus         7 ~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            48999999999999999999999999999999999999999998764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.5e-18  Score=67.80  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=31.8

Q ss_pred             HHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         64 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        64 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.++|+||+||+|++|+++|.+.+.|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5678999999999999999999999999999984

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.8e-18  Score=68.39  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             HHHHhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         63 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        63 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|+++|.+++||.|++|||+|.+.++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            36778999999999999999999999999999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-17  Score=64.32  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=29.6

Q ss_pred             hccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         67 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        67 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|++++||.|.+||++|.+.+.|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            4899999999999999999999999999995

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-17  Score=65.45  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=30.3

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ++|+||+||+|.+||++|.+.+.|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            47999999999999999999999999999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5.8e-17  Score=63.63  Aligned_cols=30  Identities=30%  Similarity=0.700  Sum_probs=28.8

Q ss_pred             ccCCCCcccccchhhccChHHHHHHhhhcC
Q psy13994         68 HEGVKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        68 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+||+||+|.+|++.|.+.++|..|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            689999999999999999999999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.1e-16  Score=58.98  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=25.9

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ||||+|++|+++|.+.+.|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-16  Score=57.64  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=24.9

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |||+|.+|||+|.+.+.|.+|+++||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.8e-16  Score=61.57  Aligned_cols=30  Identities=37%  Similarity=0.811  Sum_probs=27.8

Q ss_pred             HhccCCCCcccccchhhccChHHHHHHhhh
Q psy13994         66 QSHEGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        66 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ++|+||+||.|++|+++|++.++|..|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            469999999999999999999999999764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.1e-15  Score=59.64  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=31.5

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         15 HLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        15 h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |.++|+|++||.|++|+++|.....|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5789999999999999999999999999998774

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-14  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=29.7

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++|+|++||.|.+||++|...+.|..|++.|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            57999999999999999999999999998875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.46  E-value=1.5e-14  Score=54.48  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=25.0

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++|+++|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            69999999999999999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.5e-15  Score=59.26  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             HHHhhccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         14 AHLQSHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        14 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|+++|++++||.|++||++|...+.|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            47889999999999999999999999998888775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-14  Score=54.49  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=24.9

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |||.|++|+++|.+.+.|..|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            69999999999999999999999995

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-14  Score=55.12  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=28.5

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHcc
Q psy13994         18 SHEGVKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        18 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|+|++||.|.+||++|...+.|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999988875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=55.44  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=28.3

Q ss_pred             CCCccccccccccccChHHHHHHHHHcccccCccccChHHHHHHHH-hccCCCCccccc
Q psy13994         21 GVKKFGCEYCSARFSQKISCRVHMLRHRDVCNKPYHRKSVLIAHLQ-SHEGVKKFGCEY   78 (97)
Q Consensus        21 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~c~~~~~~~~~~~~h~~-~h~~~~~~~C~~   78 (97)
                      .++||.|.+||++|....                     .|..|++ +|++|+||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~---------------------~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPD---------------------HLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHH---------------------HHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChH---------------------HhhccCcCccCCCcCcCCcC
Confidence            478999998887775544                     5566754 699999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=9.5e-14  Score=54.29  Aligned_cols=31  Identities=32%  Similarity=0.728  Sum_probs=28.6

Q ss_pred             ccCCCccccccccccccChHHHHHHHHHccc
Q psy13994         19 HEGVKKFGCEYCSARFSQKISCRVHMLRHRD   49 (97)
Q Consensus        19 h~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   49 (97)
                      |+|++||.|.+|++.|.....|..|++.|++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            6899999999999999999999999998764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-13  Score=54.64  Aligned_cols=31  Identities=35%  Similarity=0.791  Sum_probs=28.1

Q ss_pred             hhccCCCccccccccccccChHHHHHHHHHc
Q psy13994         17 QSHEGVKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        17 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      ++|+|++||.|+.|++.|....+|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            4799999999999999999999999997654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.4e-14  Score=60.47  Aligned_cols=36  Identities=22%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             HHHHHHhccCCCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         61 LIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        61 ~~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      +..|+. |.+++||.|++  |+++|...+.|..|+++|+
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            445554 99999999977  9999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.7e-13  Score=50.47  Aligned_cols=26  Identities=23%  Similarity=0.602  Sum_probs=24.7

Q ss_pred             CCccccc--chhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |||.|++  |+++|.+.+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6999988  9999999999999999996

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=6.4e-13  Score=50.81  Aligned_cols=27  Identities=19%  Similarity=0.472  Sum_probs=25.5

Q ss_pred             CCCccccc--chhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+||.|++  |+++|+..+.|.+|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999988  9999999999999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.2e-12  Score=48.59  Aligned_cols=27  Identities=30%  Similarity=0.557  Sum_probs=25.0

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |+||.|++|+++|...+.|..|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.2e-13  Score=49.68  Aligned_cols=26  Identities=27%  Similarity=0.818  Sum_probs=24.5

Q ss_pred             CCccccc--chhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|++  |+|+|+..++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899987  9999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-12  Score=47.17  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=24.1

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||+|.+||++|...+.|..|++.|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999874

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.2e-13  Score=50.03  Aligned_cols=26  Identities=38%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             CCccccc--chhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |||.|++  |+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6999977  9999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=51.64  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=25.4

Q ss_pred             CCCCcccccchhhccChHHHHHHhh-hcC
Q psy13994         70 GVKKFGCEYCSARFSQKISCRVHML-RHR   97 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~   97 (97)
                      .+|||+|.+||++|.+.++|..|++ +|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht   30 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT   30 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC
Confidence            4799999999999999999999976 685

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.7e-12  Score=50.04  Aligned_cols=30  Identities=27%  Similarity=0.664  Sum_probs=26.4

Q ss_pred             cccCccccChHHHHHHHHhccCCCCccccc
Q psy13994         49 DVCNKPYHRKSVLIAHLQSHEGVKKFGCEY   78 (97)
Q Consensus        49 ~~c~~~~~~~~~~~~h~~~h~~~~~~~C~~   78 (97)
                      +.|++.|.....|..|+++|+|++||.|+.
T Consensus         7 ~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           7 PACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             CCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            358888899999999999999999999963

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.4e-12  Score=48.73  Aligned_cols=26  Identities=27%  Similarity=0.644  Sum_probs=24.2

Q ss_pred             CCccccc--chhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      |||.|++  |+++|...+.|..|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6999977  9999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.7e-12  Score=47.67  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=24.0

Q ss_pred             CCcccc--cchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCE--YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~--~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|+  .|+++|+..+.|..|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            689995  59999999999999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.4e-12  Score=48.85  Aligned_cols=27  Identities=30%  Similarity=0.679  Sum_probs=26.2

Q ss_pred             cchhccCchHHHHHHhhccCCCccccc
Q psy13994          2 CNKQYHRKSVLIAHLQSHEGVKKFGCE   28 (97)
Q Consensus         2 C~~~f~~~~~l~~h~~~h~~~~~~~C~   28 (97)
                      |++.|...+.|..|+++|+|++||.|+
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            899999999999999999999999996

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.10  E-value=2.6e-11  Score=45.35  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|++|+++|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            58999999999888888887777665

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-11  Score=45.06  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=21.8

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|++||++|...+.|..|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999988888888877765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=3.5e-12  Score=53.07  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=30.6

Q ss_pred             hHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHcc
Q psy13994         10 SVLIAHLQSHEGVKKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        10 ~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      +.+..|+. |.+++||.|.+  |+++|...+.|..|+++|+
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            44566664 99999999977  9999988888888877765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=9.3e-11  Score=41.92  Aligned_cols=27  Identities=26%  Similarity=0.556  Sum_probs=25.3

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+||.|.+||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999883

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.9e-10  Score=39.05  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=23.2

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.+|++|+|.|+....|..|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5689999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9.4e-10  Score=41.20  Aligned_cols=26  Identities=23%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             Ccccccc--ccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+.  |+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            5889977  8888888888888877765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=1.1e-09  Score=41.62  Aligned_cols=27  Identities=19%  Similarity=0.472  Sum_probs=23.6

Q ss_pred             CCcccccc--ccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      |+||.|+.  |+++|.....|..|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999987  9999999999999988875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.9e-10  Score=41.33  Aligned_cols=26  Identities=38%  Similarity=0.811  Sum_probs=21.0

Q ss_pred             Ccccccc--ccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+.  |+++|...+.|..|+++|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            5899976  8888888888888887765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-09  Score=38.52  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=25.5

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |+||+|..|..+-...++|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            589999999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.1e-09  Score=40.32  Aligned_cols=26  Identities=27%  Similarity=0.818  Sum_probs=22.6

Q ss_pred             Ccccccc--ccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+.  ||++|.....|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899976  9999999999999998874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=3.1e-09  Score=39.43  Aligned_cols=26  Identities=27%  Similarity=0.644  Sum_probs=21.7

Q ss_pred             Ccccccc--ccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEY--CSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|++  |+++|...+.|..|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5899976  9999988888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.9e-09  Score=36.62  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=24.7

Q ss_pred             CCcccccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||+|..|+.+-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999984

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.9e-09  Score=38.67  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=17.0

Q ss_pred             Cccccc--cccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCE--YCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~--~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|+  .|+++|.....|..|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            578885  47777766666666665554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.3e-09  Score=37.31  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=24.5

Q ss_pred             CCCcccccchhhccChHHHHHHhhhc
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+||.|++|...|.....+.-|.+.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            68999999999999999999999887

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.6e-08  Score=35.59  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.0

Q ss_pred             cccccchhhccChHHHHHHhhhcC
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ..|.+|||+|..++.|++|+..|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTS
T ss_pred             chHHHHhHHHHHHHHHHHHhhccc
Confidence            469999999999999999999886

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=3.5e-08  Score=35.13  Aligned_cols=26  Identities=27%  Similarity=0.606  Sum_probs=22.8

Q ss_pred             CCccccccccccccChHHHHHHHHHc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      ++||.|.+||+.|........|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            58999999999999999888887765

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-08  Score=34.38  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=20.0

Q ss_pred             ccccccccccccChHHHHHHHHHcc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |..|++|++-|+.+..|..|++.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5678888888888888888887664

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.9e-08  Score=35.81  Aligned_cols=25  Identities=28%  Similarity=0.620  Sum_probs=22.5

Q ss_pred             CCccccc--chhhccChHHHHHHhhhc
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRH   96 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h   96 (97)
                      +||.|.+  |+|+|...++|+.|++.+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            6899976  999999999999999964

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.50  E-value=3.9e-08  Score=33.59  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=21.8

Q ss_pred             cccccchhhccChHHHHHHhhhc
Q psy13994         74 FGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |+|..|.++|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999987

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.9e-08  Score=36.30  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=24.3

Q ss_pred             CcchhccCchHHHHHHhhccCCCccc
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGVKKFG   26 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~~~~~   26 (97)
                      +||+.|.+...|.+|...|++++||.
T Consensus        10 ~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1          10 ICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             TTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            69999999999999999999999973

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.4e-08  Score=34.61  Aligned_cols=27  Identities=30%  Similarity=0.593  Sum_probs=23.9

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||.|++|...|..+..+.-|.+.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999888888764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.6e-08  Score=36.25  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CCccccc--chhhccChHHHHHHh-hhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHM-LRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~   97 (97)
                      +||.|+.  |.|+|+..+..-.|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6899977  999999999999998 8774

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-07  Score=33.28  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=23.0

Q ss_pred             CcccccchhhccChHHHHHHhhhcC
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .|.|+.||....-.+-|+.|+++|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            3789999999999999999999996

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.29  E-value=2.2e-07  Score=35.86  Aligned_cols=27  Identities=26%  Similarity=0.608  Sum_probs=24.2

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      .+.|.|.+|++.|.+...|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999998873

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3e-07  Score=33.86  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             ccCccccChHHHHHHHHhccCCCCcc
Q psy13994         50 VCNKPYHRKSVLIAHLQSHEGVKKFG   75 (97)
Q Consensus        50 ~c~~~~~~~~~~~~h~~~h~~~~~~~   75 (97)
                      .||+.|.....|+.|..+|.+|+||.
T Consensus        10 ~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1          10 ICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             TTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            56677777778888888999999983

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.24  E-value=2.8e-07  Score=32.61  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=22.3

Q ss_pred             CCccccc--chhhccChHHHHHHhhhc
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRH   96 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h   96 (97)
                      .||.|+-  |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899954  999999999999999887

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.4e-07  Score=35.58  Aligned_cols=26  Identities=31%  Similarity=0.682  Sum_probs=23.1

Q ss_pred             cCCCCcccccchhhccChHHHHHHhh
Q psy13994         69 EGVKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        69 ~~~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      +|-|||.|..|+|.|....++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999988864

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-06  Score=33.79  Aligned_cols=26  Identities=31%  Similarity=0.682  Sum_probs=22.9

Q ss_pred             cCCCccccccccccccChHHHHHHHH
Q psy13994         20 EGVKKFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        20 ~~~~~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      +|-+||.|.+|++.|....++..|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999988854

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.3e-07  Score=31.46  Aligned_cols=24  Identities=25%  Similarity=0.671  Sum_probs=22.5

Q ss_pred             CCcccccchhhccChHHHHHHhhh
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +||.|..|.......++|..|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            699999999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-06  Score=30.40  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=18.4

Q ss_pred             CcchhccCchHHHHHHhhccCC
Q psy13994          1 VCNKQYHRKSVLIAHLQSHEGV   22 (97)
Q Consensus         1 ~C~~~f~~~~~l~~h~~~h~~~   22 (97)
                      +||+.|...+.|++|..+|+|+
T Consensus         7 ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           7 ECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             TTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHhHHHHHHHHHHHHhhcccCC
Confidence            5888888888888888888874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.8e-06  Score=30.36  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ++||+|..|.......+.|..|++.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            579999999888777777777776654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.7e-06  Score=29.85  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=20.8

Q ss_pred             ccccchhhccChHHHHHHhhhcC
Q psy13994         75 GCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        75 ~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +|+.|.|+|.....|..|-+.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            59999999999999999988875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.2e-06  Score=30.34  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=21.5

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ||.|..|+-+|.+..+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78999999999999999999976

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.5e-06  Score=29.73  Aligned_cols=25  Identities=28%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             Ccccccc--ccccccChHHHHHHHHHc
Q psy13994         23 KKFGCEY--CSARFSQKISCRVHMLRH   47 (97)
Q Consensus        23 ~~~~C~~--C~~~f~~~~~l~~h~~~~   47 (97)
                      +||.|.+  |++++...++|..|+++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            5888865  888888888888888764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.3e-06  Score=29.65  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=22.1

Q ss_pred             CCcccccchhhccChHHHHHHhhh
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +||+|..|.-.-.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999999999999999999875

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.84  E-value=3.9e-06  Score=30.39  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ||.|.+|++.|+....|.+|+.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            79999999999999999999764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=4.7e-06  Score=28.30  Aligned_cols=23  Identities=35%  Similarity=0.767  Sum_probs=21.1

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ||+|..|...|.+...|+.|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999753

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.7e-05  Score=27.61  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +|+.|..|..+-...++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999888888888888763

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.77  E-value=7.8e-06  Score=27.73  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=18.2

Q ss_pred             cccccccccccChHHHHHHHHHc
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      |.|..|.++|..++.|..|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56888888888888888887754

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.1e-05  Score=31.03  Aligned_cols=27  Identities=26%  Similarity=0.608  Sum_probs=21.0

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .+.|.|.+|++.|.+...|-.|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            356889999888888888888777654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.2e-05  Score=27.94  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ||+|..|||.|-...+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            78999999999999999999754

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.8e-05  Score=27.91  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=16.1

Q ss_pred             cccccccccccChHHHHHHHHHcc
Q psy13994         25 FGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      |.|+.||.....++-|+.|+++|+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            567777777666666666666654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.3e-05  Score=28.03  Aligned_cols=24  Identities=33%  Similarity=0.438  Sum_probs=22.1

Q ss_pred             CcccccchhhccChHHHHHHhhhc
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      |-+|+.|.++.+.+..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            568999999999999999999988

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.2e-05  Score=30.74  Aligned_cols=27  Identities=33%  Similarity=0.555  Sum_probs=24.2

Q ss_pred             CCCCccc--ccchhhccChHHHHHHhhhc
Q psy13994         70 GVKKFGC--EYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        70 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .++||.|  +-|+..|.+...|..|..+|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            4799999  56999999999999999887

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=1.7e-05  Score=27.92  Aligned_cols=27  Identities=30%  Similarity=0.769  Sum_probs=23.2

Q ss_pred             CCCcccccchhhccChHHHHHHhhhcC
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |..|.|..|...|...-.|+.|+-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            567889999999999999999988875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2e-05  Score=27.79  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      ||.|..|..+|..+.+|..||..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            78899999999999999999874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.9e-05  Score=29.60  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             cCCCcccc--ccccccccChHHHHHHHHHcc
Q psy13994         20 EGVKKFGC--EYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        20 ~~~~~~~C--~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      .+++||.|  +.|+.+|.....|..|...|.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhhe
Confidence            35899999  569999999999998877653

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=2.3e-05  Score=26.53  Aligned_cols=24  Identities=33%  Similarity=0.715  Sum_probs=21.5

Q ss_pred             CccccccccccccChHHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      .||.|..|+.-|..+.+|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999854

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=3.9e-05  Score=26.37  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=11.5

Q ss_pred             ccccccccccChHHHHHHHHHc
Q psy13994         26 GCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        26 ~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      .|+.|.++|.++..|..|-+.|
T Consensus         2 qcp~c~k~f~skyylkvhnr~h   23 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKH   23 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccccc
Confidence            3555655555555555444433

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.58  E-value=4e-05  Score=26.93  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             Cccccc--cccccccChHHHHHHHHHc
Q psy13994         23 KKFGCE--YCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        23 ~~~~C~--~C~~~f~~~~~l~~h~~~~   47 (97)
                      .||.|+  .|++.|...+.|+.|...|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478885  4888888888888887654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.9e-05  Score=31.66  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CCcccccchhhccChHHHHHHhhhc
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      ..|.|-.|+|.|.....|++|...|
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHHhc
Confidence            3588999999999999999998766

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.51  E-value=3.6e-05  Score=27.79  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=22.9

Q ss_pred             ccccccccccccChHHHHHHHHHcc-cccC
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR-DVCN   52 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~-~~c~   52 (97)
                      ||.|.+|++.|.....+..|+..-+ ..|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~cg   30 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGNLG   30 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCSSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCcCC
Confidence            7899999999999999998876533 3343

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.9e-05  Score=26.50  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=21.6

Q ss_pred             CccccccccccccChHHHHHHHHHcc
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +||.|..|.......++|..|+.+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            58999999988888888888887643

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=2e-05  Score=27.23  Aligned_cols=24  Identities=29%  Similarity=0.697  Sum_probs=19.2

Q ss_pred             ccc--ccchhhccChHHHHHHhhhcC
Q psy13994         74 FGC--EYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        74 ~~C--~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      |.|  +-|+|+|....+|..|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            455  459999999999999988774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.32  E-value=2.7e-05  Score=27.49  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=21.2

Q ss_pred             CCccccc--chhhccChHHHHHHhhhcC
Q psy13994         72 KKFGCEY--CSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   97 (97)
                      +||.|.+  |.|.|.....|.+|-.+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5777854  9999999999999987763

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.27  E-value=7.3e-05  Score=25.34  Aligned_cols=22  Identities=23%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      |.|++|-+.|....++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999775

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.26  E-value=0.00012  Score=26.76  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CCCcccccchhhccChHHHHHHhh
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ...|.|.-||..|+..+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            346889999999999999999985

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0001  Score=27.21  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             CCcccccchhhccChHHHHHHhhh
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      -.|.|..|+|+|.....+.+|...
T Consensus         3 ~afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhhh
Confidence            358899999999999999998654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00018  Score=25.36  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=20.9

Q ss_pred             CccccccccccccChHHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      +||.|..|+......++|..|+..
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999999998999999988865

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00041  Score=23.92  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             ccccccccccccChHHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      ||.|..||+.+..+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999888887643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00043  Score=24.03  Aligned_cols=24  Identities=33%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             ccccccccccccChHHHHHHHHHc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRH   47 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~   47 (97)
                      |-+|++|..+.+++..|..|.+.|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            557888888888877777776654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00025  Score=24.55  Aligned_cols=23  Identities=30%  Similarity=0.636  Sum_probs=21.0

Q ss_pred             CcccccchhhccChHHHHHHhhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .|+|+-|+.....++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            47899999999999999999875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00068  Score=23.70  Aligned_cols=27  Identities=30%  Similarity=0.769  Sum_probs=18.9

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      +.-|.|..|.+.|...-.|..||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            455778888888877777776665543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00031  Score=24.46  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=17.0

Q ss_pred             cchhhccChHHHHHHhhhcC
Q psy13994         78 YCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        78 ~C~~~f~~~~~l~~H~~~h~   97 (97)
                      -|+|.|...+.++.|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            48899999999999998873

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.84  E-value=0.00021  Score=26.42  Aligned_cols=27  Identities=22%  Similarity=0.531  Sum_probs=23.3

Q ss_pred             cCCCCcccccchhhccChHHHHHHhhh
Q psy13994         69 EGVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        69 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .++..|+|.+|.++|...+++-+|..+
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            456789999999999999999998653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00079  Score=24.74  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             CccccccccccccChHHHHHHHHH
Q psy13994         23 KKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        23 ~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      ..|.|..||++|...+.+..|...
T Consensus         3 ~afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhhh
Confidence            358999999999999998888654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00036  Score=25.93  Aligned_cols=19  Identities=21%  Similarity=0.644  Sum_probs=15.0

Q ss_pred             hhccCchHHHHHHhhccCC
Q psy13994          4 KQYHRKSVLIAHLQSHEGV   22 (97)
Q Consensus         4 ~~f~~~~~l~~h~~~h~~~   22 (97)
                      +.|.....|..|+++|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            5677778888888888875

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00086  Score=26.74  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             ccccccccccccChHHHHHHHHHcc
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      -+.|-.||+.|.....|..|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999998888888876553

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0003  Score=30.65  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             CCCcccccchhhccChHHHHHHhhh
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      ...|-|..|++.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458899999999999999999875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.47  E-value=0.00077  Score=24.53  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             ccccccccccccChHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHML   45 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~   45 (97)
                      .|.|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4889999999999999998853

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.06  E-value=0.0021  Score=25.51  Aligned_cols=26  Identities=23%  Similarity=0.301  Sum_probs=23.3

Q ss_pred             CCCCcccccchhhccChHHHHHHhhh
Q psy13994         70 GVKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        70 ~~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      .+.|-.|+.|+-...++.+|++|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999864

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.30  E-value=0.0098  Score=23.53  Aligned_cols=26  Identities=23%  Similarity=0.301  Sum_probs=22.5

Q ss_pred             CCCccccccccccccChHHHHHHHHH
Q psy13994         21 GVKKFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        21 ~~~~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      .+.|..|++|+.......+|..|+..
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999888764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0023  Score=27.80  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             ccccccccccccChHHHHHHHHH
Q psy13994         24 KFGCEYCSARFSQKISCRVHMLR   46 (97)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~h~~~   46 (97)
                      -|.|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            48999999999999999999764

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.013  Score=21.55  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             CCCcccccchhhccChHHHHHHhhhc
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      .+.|.|+.|-|-......+.+|+...
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~KC   30 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKKC   30 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHT
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHhC
Confidence            46799999999999999999998753

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.01  Score=20.60  Aligned_cols=18  Identities=22%  Similarity=0.233  Sum_probs=13.2

Q ss_pred             ccchhhccChHHHHHHhh
Q psy13994         77 EYCSARFSQKISCRVHML   94 (97)
Q Consensus        77 ~~C~~~f~~~~~l~~H~~   94 (97)
                      +-||+.|+....|.-|.+
T Consensus         6 ~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             TTTCCEESSHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHH
Confidence            458888888888776654

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.02  E-value=0.011  Score=20.95  Aligned_cols=26  Identities=23%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             CCccc--ccchhhccChHHHHHHhhhcC
Q psy13994         72 KKFGC--EYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        72 ~~~~C--~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      +.|.|  +.|+-.|....-|+.|+-.|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHT   29 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHT   29 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHH
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhc
Confidence            45777  558999999999999987764

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.17  E-value=0.023  Score=21.02  Aligned_cols=19  Identities=21%  Similarity=0.441  Sum_probs=17.6

Q ss_pred             cccchhhccChHHHHHHhh
Q psy13994         76 CEYCSARFSQKISCRVHML   94 (97)
Q Consensus        76 C~~C~~~f~~~~~l~~H~~   94 (97)
                      |..|+..|.+.+.+..|.+
T Consensus        11 C~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHH
Confidence            8999999999999999976

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.022  Score=24.20  Aligned_cols=25  Identities=16%  Similarity=0.523  Sum_probs=22.2

Q ss_pred             CCcccccchhhccChHHHHHHhhhc
Q psy13994         72 KKFGCEYCSARFSQKISCRVHMLRH   96 (97)
Q Consensus        72 ~~~~C~~C~~~f~~~~~l~~H~~~h   96 (97)
                      -.|+|.-|+..|.....|..|+..|
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhc
Confidence            4699999999999999999998765

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=92.90  E-value=0.015  Score=29.69  Aligned_cols=39  Identities=21%  Similarity=0.527  Sum_probs=27.5

Q ss_pred             hHHHHHHHHhcc--CCC-----CcccccchhhccChHHHHHHhhhcC
Q psy13994         58 KSVLIAHLQSHE--GVK-----KFGCEYCSARFSQKISCRVHMLRHR   97 (97)
Q Consensus        58 ~~~~~~h~~~h~--~~~-----~~~C~~C~~~f~~~~~l~~H~~~h~   97 (97)
                      ...|..|....-  |..     -|+|..||| +....+|..|++.|.
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHcC
Confidence            456677776532  211     279999998 677788999999873

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.073  Score=22.53  Aligned_cols=27  Identities=15%  Similarity=0.461  Sum_probs=23.6

Q ss_pred             CCccccccccccccChHHHHHHHHHcc
Q psy13994         22 VKKFGCEYCSARFSQKISCRVHMLRHR   48 (97)
Q Consensus        22 ~~~~~C~~C~~~f~~~~~l~~h~~~~~   48 (97)
                      ...|.|..|+..|.+...|..|+..|.
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhcc
Confidence            456999999999999999999988765

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.97  E-value=0.051  Score=18.83  Aligned_cols=22  Identities=32%  Similarity=0.741  Sum_probs=17.4

Q ss_pred             Cccc--ccchhhccChHHHHHHhh
Q psy13994         73 KFGC--EYCSARFSQKISCRVHML   94 (97)
Q Consensus        73 ~~~C--~~C~~~f~~~~~l~~H~~   94 (97)
                      .|.|  ..|+..|....++..|.-
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHh
Confidence            4666  459999999999998864

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.047  Score=20.13  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=18.6

Q ss_pred             CcccccchhhccChHHHHHHhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      ...|-+|-++|.......+|+-
T Consensus         3 kltclecmrtfkssfsiwrhqv   24 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQV   24 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhh
Confidence            3468999999999999999874

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.022  Score=24.22  Aligned_cols=19  Identities=26%  Similarity=0.562  Sum_probs=15.0

Q ss_pred             CCCcccccchhhccChHHH
Q psy13994         71 VKKFGCEYCSARFSQKISC   89 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l   89 (97)
                      ...|.|+.|++.|+..-.+
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~   30 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHH
T ss_pred             CCceECCCCCCCcchhhHH
Confidence            4569999999999876544

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.03  Score=22.21  Aligned_cols=22  Identities=27%  Similarity=0.717  Sum_probs=19.0

Q ss_pred             cccccchhhccChHHHHHHhhh
Q psy13994         74 FGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        74 ~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      -.|..|+..|+....++.|+-+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFs   28 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFS   28 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccCcccceeeeeecchHhhhhh
Confidence            6799999999999999998643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.089  Score=18.20  Aligned_cols=22  Identities=18%  Similarity=0.573  Sum_probs=18.4

Q ss_pred             CcccccchhhccChHHHHHHhh
Q psy13994         73 KFGCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        73 ~~~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .|.|.-|||.......++-|..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEe
Confidence            3779999999999988888764

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.11  E-value=0.18  Score=24.23  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             CCCcccccchhhccChHHHHHHhhh
Q psy13994         71 VKKFGCEYCSARFSQKISCRVHMLR   95 (97)
Q Consensus        71 ~~~~~C~~C~~~f~~~~~l~~H~~~   95 (97)
                      +.+..|-+|.+.|.....+..|++.
T Consensus        13 ~~~~~CLFCd~~f~s~~~~l~H~k~   37 (121)
T d1wira_          13 RQHTPCLFCDRLFASAEETFSHCKL   37 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cccceecccCCccCCHHHHHHHHHH
Confidence            4567799999999999999999875

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.17  Score=16.81  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=15.3

Q ss_pred             ccccchhhccChHHHHHHhh
Q psy13994         75 GCEYCSARFSQKISCRVHML   94 (97)
Q Consensus        75 ~C~~C~~~f~~~~~l~~H~~   94 (97)
                      .|+.|...|.....-+.|..
T Consensus         2 vcpycslrf~sp~lk~ehe~   21 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHES   21 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhhh
Confidence            48889999988877666654

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.86  E-value=0.24  Score=18.59  Aligned_cols=12  Identities=25%  Similarity=0.376  Sum_probs=6.8

Q ss_pred             CCCccccccccc
Q psy13994         21 GVKKFGCEYCSA   32 (97)
Q Consensus        21 ~~~~~~C~~C~~   32 (97)
                      |+.|-.|++|+.
T Consensus        17 g~~P~~CPvCg~   28 (37)
T d1nnqa2          17 DEAPEYCPVCGA   28 (37)
T ss_dssp             SCCCSBCTTTCC
T ss_pred             CCCCCcCCCCCC
Confidence            445556666654

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.40  E-value=0.23  Score=18.52  Aligned_cols=13  Identities=23%  Similarity=0.424  Sum_probs=8.8

Q ss_pred             cCCCCcccccchh
Q psy13994         69 EGVKKFGCEYCSA   81 (97)
Q Consensus        69 ~~~~~~~C~~C~~   81 (97)
                      .++.|-+|++|+.
T Consensus        16 ~g~~Pe~CPvCg~   28 (36)
T d1yuza2          16 KGEDFEKCPICFR   28 (36)
T ss_dssp             ESSCCSBCTTTCC
T ss_pred             eCCCCCcCCCCCC
Confidence            4456677888874