Psyllid ID: psy14030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccEEEEEcccccHHHcccccHHHHcccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccHHHHHHHHHHcccEEEEEccccHHHHHcHHHHHHccccEEcccEEEcccc
Coil and Loop (DISEMBL)
mfpgttvlgafdpipaIADICAEYDMWLHvdaawgggalvSRKHRHLLtgierpqnrsedtpc
Flexible Loop (DISEMBL)
mfpgttvlgafdpIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHlltgierpqnrsedtpc
Low Complexity Region (SEG)
MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC
Disordered region (IsUnstruct)
*****TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLT**************
Disordered Region (DISOPRED)
MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC
Disordered Region (DISEMBL)
MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER**********
Disordered Region (DISPRO)
*FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTPC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
P18088	593	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	5e-19
P48318	593	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	5e-19
P14748	594	Glutamate decarboxylase 1	N/A	N/A	0.793	0.084	0.78	5e-19
A0PA85	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	5e-19
P48319	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	5e-19
Q5R7S7	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	7e-19
Q5IS68	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	7e-19
Q99259	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.78	7e-19
Q0VCA1	594	Glutamate decarboxylase 1	yes	N/A	0.793	0.084	0.76	2e-18
Q64611	493	Cysteine sulfinic acid de	no	N/A	0.793	0.101	0.72	4e-17

>sp|P18088|DCE1_RAT Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

Catalyzes the production of GABA.
Rattus norvegicus (taxid: 10116)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|P48318|DCE1_MOUSE Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

Catalyzes the production of GABA.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P14748|DCE1_FELCA Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

Catalyzes the production of GABA.

Felis catus (taxid: 9685)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|A0PA85|DCE1_CANFA Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

Catalyzes the production of GABA.

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48319|DCE1_PIG Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

Catalyzes the production of GABA.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5R7S7|DCE1_PONAB Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 395

Catalyzes the production of GABA.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q5IS68|DCE1_PANTR Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 395

Catalyzes the production of GABA.

Pan troglodytes (taxid: 9598)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q99259|DCE1_HUMAN Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 395

Catalyzes the production of GABA.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q0VCA1|DCE1_BOVIN Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+S+KHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSQKHRHKLSGIER 395

Catalyzes the production of GABA.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q64611|CSAD_RAT Cysteine sulfinic acid decarboxylase OS=Rattus norvegicus GN=Csad PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTVLGAFDP+ AIAD+C  + +WLHVDAAWGG  L+SR HRHLL GI+R
Sbjct: 246 GTTVLGAFDPLDAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQR 295

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
392464928	474	glutamate decarboxylase [Tetranychus cin	0.841	0.111	0.773	4e-19
395519740	594	PREDICTED: glutamate decarboxylase 1 [Sa	0.793	0.084	0.8	3e-18
156564353	540	aspartate 1-decarboxylase [Tribolium cas	0.793	0.092	0.8	8e-18
162424467	540	aspartate 1-decarboxylase [Tribolium cas	0.793	0.092	0.8	9e-18
432098404	655	Glutamate decarboxylase 1 [Myotis davidi	0.793	0.076	0.78	2e-17
431894897	560	Glutamate decarboxylase 1 [Pteropus alec	0.793	0.089	0.78	2e-17
253763	593	glutamic acid decarboxylase, GAD [mice,	0.793	0.084	0.78	2e-17
31982847	593	glutamate decarboxylase 1 [Mus musculus]	0.793	0.084	0.78	2e-17
57163763	594	glutamate decarboxylase 1 [Felis catus]	0.793	0.084	0.78	2e-17
348585845	594	PREDICTED: glutamate decarboxylase 1 [Ca	0.793	0.084	0.78	2e-17

>gi|392464928|gb|AFM73660.1| glutamate decarboxylase [Tetranychus cinnabarinus]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 47/53 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQN 56
           GTTVLGAFDPI  +ADICA+Y+MWLH+DAAWGGG L+SRKHRH L GIER Q+
Sbjct: 266 GTTVLGAFDPINPLADICAKYNMWLHIDAAWGGGCLLSRKHRHRLAGIERAQS 318

Source: Tetranychus cinnabarinus

Species: Tetranychus cinnabarinus

Genus: Tetranychus

Family: Tetranychidae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395519740|ref|XP_003764000.1| PREDICTED: glutamate decarboxylase 1 [Sarcophilus harrisii]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/50 (80%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPIP IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 346 GTTVYGAFDPIPEIADICHKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 395

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156564353|ref|NP_001096055.1| aspartate 1-decarboxylase [Tribolium castaneum] gi|155675826|gb|ABU25221.1| aspartate 1-decarboxylase [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/50 (80%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV+GAFDPI  IAD+C +Y +WLHVDAAWGGGALVS KHRHLL GIER
Sbjct: 293 GTTVIGAFDPIEKIADVCQKYKLWLHVDAAWGGGALVSAKHRHLLKGIER 342

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|162424467|gb|ABX89951.1| aspartate 1-decarboxylase [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/50 (80%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV+GAFDPI  IAD+C +Y +WLHVDAAWGGGALVS KHRHLL GIER
Sbjct: 293 GTTVIGAFDPIEKIADVCQKYKLWLHVDAAWGGGALVSAKHRHLLKGIER 342

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432098404|gb|ELK28204.1| Glutamate decarboxylase 1 [Myotis davidii]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 437 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 486

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431894897|gb|ELK04690.1| Glutamate decarboxylase 1 [Pteropus alecto]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 342 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 391

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|253763|gb|AAB22952.1| glutamic acid decarboxylase, GAD [mice, brain, Peptide, 593 aa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

Source: Mus sp.

Species: Mus sp.

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

>gi|31982847|ref|NP_032103.2| glutamate decarboxylase 1 [Mus musculus] gi|27151768|sp|P48318.2|DCE1_MOUSE RecName: Full=Glutamate decarboxylase 1; AltName: Full=67 kDa glutamic acid decarboxylase; Short=GAD-67; AltName: Full=Glutamate decarboxylase 67 kDa isoform gi|17225421|gb|AAL37393.1|AF326547_1 glutamic acid decarboxylase 1 [Mus musculus] gi|17225423|gb|AAL37394.1|AF326548_1 glutamic acid decarboxylase 1 [Mus musculus] gi|2072120|emb|CAA72934.1| 67kD glutamic acid decarboxylase [Mus musculus] gi|19548738|gb|AAL90766.1| glutamic acid decarboxylase [Mus musculus] gi|19548740|gb|AAL90767.1| glutamic acid decarboxylase [Mus musculus] gi|20073332|gb|AAH27059.1| Glutamic acid decarboxylase 1 [Mus musculus] gi|74138189|dbj|BAE28589.1| unnamed protein product [Mus musculus] gi|74144415|dbj|BAE36059.1| unnamed protein product [Mus musculus] gi|74205195|dbj|BAE23133.1| unnamed protein product [Mus musculus] gi|148695116|gb|EDL27063.1| glutamic acid decarboxylase 1 [Mus musculus] gi|419183598|gb|AFX68720.1| glutamate decarboxylase [Mus musculus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57163763|ref|NP_001009225.1| glutamate decarboxylase 1 [Felis catus] gi|416884|sp|P14748.3|DCE1_FELCA RecName: Full=Glutamate decarboxylase 1; AltName: Full=67 kDa glutamic acid decarboxylase; Short=GAD-67; AltName: Full=Glutamate decarboxylase 67 kDa isoform gi|163859|gb|AAA51430.1| glutamic acid decarboxylase [Felis catus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348585845|ref|XP_003478681.1| PREDICTED: glutamate decarboxylase 1 [Cavia porcellus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
MGI|MGI:95632	593	Gad1 "glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
RGD|2652	593	Gad1 "glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
UNIPROTKB|A0PA85	594	GAD1 "Glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
UNIPROTKB|F1PRT3	594	GAD1 "Glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
UNIPROTKB|P48319	594	GAD1 "Glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
UNIPROTKB|J9P2A8	595	GAD1 "Glutamate decarboxylase	0.793	0.084	0.78	4.1e-17
UNIPROTKB|Q9YI58	590	GAD67 "Glutamate decarboxylase	0.793	0.084	0.78	5.2e-17
UNIPROTKB|Q99259	594	GAD1 "Glutamate decarboxylase	0.793	0.084	0.78	5.2e-17
UNIPROTKB|Q0VCA1	594	GAD1 "Glutamate decarboxylase	0.793	0.084	0.76	1.1e-16
ZFIN|ZDB-GENE-030909-3	613	gad1b "glutamate decarboxylase	0.793	0.081	0.76	1.9e-16

MGI|MGI:95632 Gad1 "glutamate decarboxylase 1" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=ISO

GO:0016595 "glutamate binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=IMP

GO:0021772 "olfactory bulb development" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0035108 "limb morphogenesis" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0043679 "axon terminus" evidence=IDA

GO:0044306 "neuron projection terminus" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0061351 "neural precursor cell proliferation" evidence=IMP

RGD|2652 Gad1 "glutamate decarboxylase 1" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0004351 "glutamate decarboxylase activity" evidence=ISO;ISS;IDA

GO:0005622 "intracellular" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IDA

GO:0016595 "glutamate binding" evidence=IDA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0021696 "cerebellar cortex morphogenesis" evidence=ISO

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0030424 "axon" evidence=ISO

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0043679 "axon terminus" evidence=ISO

GO:0044306 "neuron projection terminus" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0048786 "presynaptic active zone" evidence=ISO

GO:0048854 "brain morphogenesis" evidence=ISO

GO:0061351 "neural precursor cell proliferation" evidence=ISO

UNIPROTKB|A0PA85 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|F1PRT3 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   345 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 394

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P48319 GAD1 "Glutamate decarboxylase 1" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|J9P2A8 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L+GIER
Sbjct:   346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIER 395

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|Q9YI58 GAD67 "Glutamate decarboxylase 67" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct:   342 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 391

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q99259 GAD1 "Glutamate decarboxylase 1" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.2e-17, P = 5.2e-17
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct:   346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 395

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IEA

GO:0016595 "glutamate binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0006538 "glutamate catabolic process" evidence=TAS

GO:0012506 "vesicle membrane" evidence=NAS

GO:0018352 "protein-pyridoxal-5-phosphate linkage" evidence=TAS

GO:0006540 "glutamate decarboxylation to succinate" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0061202 "clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane" evidence=TAS

UNIPROTKB|Q0VCA1 GAD1 "Glutamate decarboxylase 1" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+S+KHRH L+GIER
Sbjct:   346 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSQKHRHKLSGIER 395

GO:0005622 "intracellular" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030909-3 gad1b "glutamate decarboxylase 1b" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query:     4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
             GTTV GAFDPI  IADIC +Y++WLHVD AWGGG L+SRKHRH L+GIER
Sbjct:   365 GTTVYGAFDPINDIADICEKYNLWLHVDGAWGGGLLMSRKHRHKLSGIER 414

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEP

GO:0009449 "gamma-aminobutyric acid biosynthetic process" evidence=IEP

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48318	DCE1_MOUSE	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0843	yes	N/A
P48319	DCE1_PIG	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0841	yes	N/A
Q99259	DCE1_HUMAN	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0841	yes	N/A
Q5IS68	DCE1_PANTR	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0841	yes	N/A
P71362	DDC_HAEIN	4, ., 1, ., 1, ., 8, 6	0.5510	0.7777	0.0958	yes	N/A
Q9Z3R1	RHBB_RHIME	4, ., 1, ., 1, ., 8, 6	0.5263	0.8888	0.1131	yes	N/A
P18088	DCE1_RAT	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0843	yes	N/A
A0PA85	DCE1_CANFA	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0841	yes	N/A
Q5R7S7	DCE1_PONAB	4, ., 1, ., 1, ., 1, 5	0.78	0.7936	0.0841	yes	N/A
Q0VCA1	DCE1_BOVIN	4, ., 1, ., 1, ., 1, 5	0.76	0.7936	0.0841	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	7e-25
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-23
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	4e-18
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-16
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	1e-12
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	1e-10
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	2e-10
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	1e-08
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-05
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	1e-04
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	2e-04
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	3e-04
pfam05889	386	pfam05889, SLA_LP_auto_ag, Soluble liver antigen/l	6e-04
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	0.001
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	0.002
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	0.002
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	0.003
TIGR03531	444	TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec)	0.004

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 93.0 bits (232), Expect = 7e-25
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT  GA DP+  IAD+  +YD+WLHVDAA+GG  L   + RHL  GIER
Sbjct: 157 GTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER 206

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 90.1 bits (224), Expect = 1e-23
 Identities = 29/50 (58%), Positives = 36/50 (72%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT  GAFDP+  + DIC +YD+WLHVDAA+ G A +  + RH L GIER
Sbjct: 203 GTTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPEFRHWLFGIER 252

Length = 373

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score = 75.1 bits (185), Expect = 4e-18
 Identities = 28/50 (56%), Positives = 32/50 (64%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT  G  DP+  +ADI  E     HVDAAWGG  L+S  +RHLL GIER
Sbjct: 274 GTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER 323

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLT-GIER 53
           GTT  G+ D I  +ADI  EY +WLHVDAA+GG  L   +       G+E 
Sbjct: 216 GTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEG 266

Length = 460

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36
           GTT LG  DPIP ++ I  E  ++LHVDAA+GG
Sbjct: 160 GTTELGQVDPIPELSKIALENGIFLHVDAAFGG 192

Length = 371

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   A DP+  +  I     MW HVDAA+ G A +  ++RH + G+E
Sbjct: 248 GTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296

Length = 490

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36
           GTT LG  D I  ++ I  E  ++LHVDAA+GG
Sbjct: 162 GTTELGQIDDIEELSKIALENGIYLHVDAAFGG 194

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   A DP+  + +I  +Y +WLHVDAA+ G A +  ++R  + GIE
Sbjct: 296 GTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344

Length = 539

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 3   PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA 38
           P TT  G   P+  I  I  EY + L VDAA  GGA
Sbjct: 100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGA 135

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 9   GAFDPIPAIADICAEYDMWLHVDAA 33
           G   PI  I +IC E  +  HVDA 
Sbjct: 155 GTIQPIAEIGEICKERGILFHVDAV 179

Length = 386

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 8   LGAFDPIPAIADICAEYDMWLHVDAAWGGGAL---VSRKHRHLLT 49
            G+  PI  IA++   ++ + HVDAA   G +   +S     L++
Sbjct: 151 TGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLIS 195

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 3   PGTTVLGAFDPIPAIADICAEYDMWLHVDAA 33
             + V G  +P+  I  +  EY   + VDAA
Sbjct: 147 HVSNVTGTVNPVEEIGKLAHEYGALVVVDAA 177

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 12  DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL 48
           D +  IA ICAEYD+   V+ A+G   + S K+ HL+
Sbjct: 172 DRVKEIAKICAEYDVPHLVNGAYG---IQSEKYIHLI 205

This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. The archaeal sequences Methanopyrus kandleri spcS and MK0229 are annotated as being pyridoxal phosphate-dependent enzymes. Length = 386

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 4   GTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGG 36
           GTT  G ++ + A+ D   EY      D+ +HVDAA GG
Sbjct: 195 GTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG 233

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 8   LGAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39
           +G    I AI +IC E  ++ HVDAA   G +
Sbjct: 155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKI 186

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 9   GAFDPIPAIADICAEYDMWLHVDAAWGGGAL 39
           G   P+P + D+  +Y   L VD A   G  
Sbjct: 146 GDIAPLPELVDLAKKYGAILFVDEAHSVGVY 176

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 4   GTTVLGAFDPIPAIADICAEY---DMWLHVDAAWGGGAL 39
           GTT+ GA D I  I +I  +    D ++H DAA  G  L
Sbjct: 169 GTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMIL 207

Length = 380

>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium transferase

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 12  DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL 48
           D I  IA ICA YD+   V+ A+G   L S K+  L+
Sbjct: 222 DDIEEIAKICANYDIPHIVNNAYG---LQSNKYMELI 255

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein [Protein synthesis, tRNA aminoacylation]. Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
PLN02590	539	probable tyrosine decarboxylase	99.89
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.88
PLN02880	490	tyrosine decarboxylase	99.86
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.84
KOG0629|consensus	510		99.84
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.8
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.8
PLN02263	470	serine decarboxylase	99.79
KOG0628|consensus	511		99.76
PLN03032	374	serine decarboxylase; Provisional	99.69
PRK02769	380	histidine decarboxylase; Provisional	99.67
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.67
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.24
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.07
KOG1383|consensus	491		98.96
PRK13520	371	L-tyrosine decarboxylase; Provisional	98.93
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.82
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	98.78
PLN02651	364	cysteine desulfurase	98.48
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.29
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.27
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	98.2
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.2
KOG1549|consensus	428		98.14
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.13
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.12
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.12
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.1
PRK14012	404	cysteine desulfurase; Provisional	98.05
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	97.95
PTZ00094	452	serine hydroxymethyltransferase; Provisional	97.95
PRK02948	381	cysteine desulfurase; Provisional	97.94
PRK05367	954	glycine dehydrogenase; Provisional	97.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	97.89
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	97.8
TIGR01814	406	kynureninase kynureninase. This model describes ky	97.78
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	97.71
PRK07179	407	hypothetical protein; Provisional	97.7
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	97.67
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	97.67
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.67
PRK04366	481	glycine dehydrogenase subunit 2; Validated	97.6
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	97.54
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.53
PRK10874	401	cysteine sulfinate desulfinase; Provisional	97.53
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	97.52
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	97.51
cd00609	350	AAT_like Aspartate aminotransferase family. This f	97.46
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.46
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.41
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	97.4
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	97.35
PLN02721	353	threonine aldolase	97.31
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	97.31
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	97.25
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.23
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	97.16
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	97.11
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.08
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	97.08
PRK13580	493	serine hydroxymethyltransferase; Provisional	97.02
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	97.0
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	97.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	97.0
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	96.99
PRK05939	397	hypothetical protein; Provisional	96.98
PRK15029	755	arginine decarboxylase; Provisional	96.97
PRK09064	407	5-aminolevulinate synthase; Validated	96.97
PLN03226	475	serine hydroxymethyltransferase; Provisional	96.93
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	96.92
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	96.92
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	96.9
PRK06767	386	methionine gamma-lyase; Provisional	96.9
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	96.89
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	96.89
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	96.78
PRK13393	406	5-aminolevulinate synthase; Provisional	96.77
PRK08249	398	cystathionine gamma-synthase; Provisional	96.77
PRK13237	460	tyrosine phenol-lyase; Provisional	96.74
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	96.73
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	96.72
PRK13392	410	5-aminolevulinate synthase; Provisional	96.72
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	96.71
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	96.69
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	96.67
PRK13034	416	serine hydroxymethyltransferase; Reviewed	96.67
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	96.67
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	96.67
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	96.66
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	96.64
PLN02242	418	methionine gamma-lyase	96.63
PRK07050	394	cystathionine beta-lyase; Provisional	96.57
PRK06460	376	hypothetical protein; Provisional	96.55
PRK07671	377	cystathionine beta-lyase; Provisional	96.53
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	96.52
PRK08574	385	cystathionine gamma-synthase; Provisional	96.52
PRK00950	361	histidinol-phosphate aminotransferase; Validated	96.51
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	96.51
PRK08064	390	cystathionine beta-lyase; Provisional	96.5
PLN02409	401	serine--glyoxylate aminotransaminase	96.5
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	96.49
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	96.45
PRK07811	388	cystathionine gamma-synthase; Provisional	96.44
PLN02414	993	glycine dehydrogenase (decarboxylating)	96.39
PRK09028	394	cystathionine beta-lyase; Provisional	96.37
PRK00451	447	glycine dehydrogenase subunit 1; Validated	96.37
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	96.35
PRK07503	403	methionine gamma-lyase; Provisional	96.32
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	96.31
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	96.3
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	96.29
PRK05967	395	cystathionine beta-lyase; Provisional	96.27
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	96.25
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	96.24
PRK08861	388	cystathionine gamma-synthase; Provisional	96.21
PRK08361	391	aspartate aminotransferase; Provisional	96.11
PRK05968	389	hypothetical protein; Provisional	96.09
PRK07582	366	cystathionine gamma-lyase; Validated	96.06
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	96.04
PLN02509	464	cystathionine beta-lyase	96.03
PLN02656	409	tyrosine transaminase	95.97
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	95.91
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	95.91
PRK07324	373	transaminase; Validated	95.86
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	95.85
PRK07505	402	hypothetical protein; Provisional	95.85
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	95.79
PRK08114	395	cystathionine beta-lyase; Provisional	95.79
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	95.73
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	95.72
PRK06108	382	aspartate aminotransferase; Provisional	95.69
PRK07269	364	cystathionine gamma-synthase; Reviewed	95.69
PLN02724	805	Molybdenum cofactor sulfurase	95.69
PRK06234	400	methionine gamma-lyase; Provisional	95.66
PRK05764	393	aspartate aminotransferase; Provisional	95.65
PRK03244	398	argD acetylornithine aminotransferase; Provisional	95.65
PRK05957	389	aspartate aminotransferase; Provisional	95.63
PTZ00125	400	ornithine aminotransferase-like protein; Provision	95.63
PRK08045	386	cystathionine gamma-synthase; Provisional	95.61
PRK08776	405	cystathionine gamma-synthase; Provisional	95.6
PRK08247	366	cystathionine gamma-synthase; Reviewed	95.58
PRK07568	397	aspartate aminotransferase; Provisional	95.57
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	95.52
PRK09082	386	methionine aminotransferase; Validated	95.49
PRK03080	378	phosphoserine aminotransferase; Provisional	95.48
PLN02271	586	serine hydroxymethyltransferase	95.45
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	95.37
PLN02822	481	serine palmitoyltransferase	95.36
PLN02624	474	ornithine-delta-aminotransferase	95.35
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	95.35
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	95.3
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	95.29
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	95.24
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	95.23
PRK07550	386	hypothetical protein; Provisional	95.21
PLN02483	489	serine palmitoyltransferase	95.08
PRK09265	404	aminotransferase AlaT; Validated	94.95
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	94.92
PRK15399	713	lysine decarboxylase LdcC; Provisional	94.77
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	94.74
PRK07309	391	aromatic amino acid aminotransferase; Validated	94.63
PRK06225	380	aspartate aminotransferase; Provisional	94.61
PRK08912	387	hypothetical protein; Provisional	94.56
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	94.53
PRK08363	398	alanine aminotransferase; Validated	94.49
PRK10534	333	L-threonine aldolase; Provisional	94.46
PRK15400	714	lysine decarboxylase CadA; Provisional	94.44
PRK13578	720	ornithine decarboxylase; Provisional	94.41
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	94.3
PRK07682	378	hypothetical protein; Validated	94.2
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	94.2
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	94.19
PRK12414	384	putative aminotransferase; Provisional	94.11
PRK07683	387	aminotransferase A; Validated	94.1
PRK04260	375	acetylornithine aminotransferase; Provisional	94.02
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	94.02
PLN00175	413	aminotransferase family protein; Provisional	94.01
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	93.87
KOG0053|consensus	409		93.87
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	93.75
PRK05942	394	aspartate aminotransferase; Provisional	93.74
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	93.73
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	93.68
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	93.63
PRK08056	356	threonine-phosphate decarboxylase; Provisional	93.61
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	93.6
PTZ00433	412	tyrosine aminotransferase; Provisional	93.59
PRK07777	387	aminotransferase; Validated	93.5
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	93.48
PRK08175	395	aminotransferase; Validated	93.3
PRK08354	311	putative aminotransferase; Provisional	93.22
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	93.17
PRK03321	352	putative aminotransferase; Provisional	93.07
PRK06434	384	cystathionine gamma-lyase; Validated	93.07
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	93.01
PRK02731	367	histidinol-phosphate aminotransferase; Validated	92.97
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	92.95
PRK03715	395	argD acetylornithine transaminase protein; Provisi	92.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	92.92
PRK07681	399	aspartate aminotransferase; Provisional	92.46
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	92.42
PRK06358	354	threonine-phosphate decarboxylase; Provisional	92.42
PRK04311	464	selenocysteine synthase; Provisional	92.42
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	92.37
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	92.37
PRK07337	388	aminotransferase; Validated	92.36
KOG1359|consensus	417		92.36
PRK08960	387	hypothetical protein; Provisional	92.32
PRK09148	405	aminotransferase; Validated	92.05
PRK06348	384	aspartate aminotransferase; Provisional	92.01
PRK06207	405	aspartate aminotransferase; Provisional	91.94
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	91.93
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	91.84
PRK06290	410	aspartate aminotransferase; Provisional	91.79
PTZ00377	481	alanine aminotransferase; Provisional	91.78
PRK02627	396	acetylornithine aminotransferase; Provisional	91.52
PRK01278	389	argD acetylornithine transaminase protein; Provisi	91.43
PLN02955	476	8-amino-7-oxononanoate synthase	91.33
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	91.3
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	91.22
PRK02936	377	argD acetylornithine aminotransferase; Provisional	91.06
PTZ00376	404	aspartate aminotransferase; Provisional	90.95
PRK12566	954	glycine dehydrogenase; Provisional	90.74
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	90.7
KOG1357|consensus	519		90.66
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	90.61
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	90.51
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	90.46
PRK07049	427	methionine gamma-lyase; Validated	90.31
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	90.23
PLN02187	462	rooty/superroot1	90.2
KOG2862|consensus	385		90.14
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	90.1
PLN02397	423	aspartate transaminase	90.07
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	90.01
KOG1368|consensus	384		89.7
PRK07908	349	hypothetical protein; Provisional	89.51
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	89.45
PRK08068	389	transaminase; Reviewed	89.24
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	88.64
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	88.59
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	88.49
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	88.46
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	88.28
PLN02760	504	4-aminobutyrate:pyruvate transaminase	87.91
PRK06836	394	aspartate aminotransferase; Provisional	87.87
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	87.61
PRK06425	332	histidinol-phosphate aminotransferase; Validated	87.39
PRK06107	402	aspartate aminotransferase; Provisional	87.32
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	87.11
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	86.97
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	86.73
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	86.71
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	86.36
KOG1360|consensus	570		86.06
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	85.59
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	85.47
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	85.09
PRK06855	433	aminotransferase; Validated	84.97
cd01455	191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	84.89
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	84.87
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	84.67
PRK06541	460	hypothetical protein; Provisional	84.63
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	84.44
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	84.21
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	84.14
PRK08636	403	aspartate aminotransferase; Provisional	83.86
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	83.83
PRK05367	954	glycine dehydrogenase; Provisional	83.48
PRK05839	374	hypothetical protein; Provisional	83.47
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	83.44
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	83.16
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	82.77
PRK09105	370	putative aminotransferase; Provisional	82.73
PRK12403	460	putative aminotransferase; Provisional	82.32
KOG0630|consensus	838		81.32
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	81.29
PLN02368	407	alanine transaminase	81.18
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	81.13
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	81.08
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	81.03
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	80.79
KOG0257|consensus	420		80.38
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	80.34
PRK06062	451	hypothetical protein; Provisional	80.11

>PLN02590 probable tyrosine decarboxylase

Probab=99.89  E-value=3.3e-24  Score=155.13  Aligned_cols=62  Identities=34%  Similarity=0.627  Sum_probs=60.9

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ||+|||.+|++|||++|+++|+++++|+||||||||+++++++++++++|+++||||++|||
T Consensus       293 aTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~H  354 (539)
T PLN02590        293 ATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAH  354 (539)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECch
Confidence            68999999999999999999999999999999999999999999999999999999999999

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.88  E-value=1.7e-23  Score=145.34  Aligned_cols=62  Identities=55%  Similarity=0.920  Sum_probs=57.5

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||.+|++||+++|+++|+++++|+||||||||+++++++++++.++++++|||++|+|
T Consensus       200 at~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~H  261 (373)
T PF00282_consen  200 ATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPH  261 (373)
T ss_dssp             EEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETT
T ss_pred             ccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchh
Confidence            58999999999999999999999999999999999999999999999999999999999999

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02880 tyrosine decarboxylase

Probab=99.86  E-value=8.8e-23  Score=145.81  Aligned_cols=62  Identities=32%  Similarity=0.564  Sum_probs=60.7

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ||+|||.+|++||+++|+++|+++|+|+||||||||+++++++++++++|++++|||++|+|
T Consensus       245 ataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~H  306 (490)
T PLN02880        245 ATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAH  306 (490)
T ss_pred             EecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECch
Confidence            68999999999999999999999999999999999999999999999999999999999999

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.84  E-value=1.4e-21  Score=139.32  Aligned_cols=62  Identities=39%  Similarity=0.501  Sum_probs=58.2

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhh-hCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHL-LTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~-~~~i~~adSi~~d~h   62 (63)
                      +|+|||++|.+|||++|+++|++|++|+|||||+||+.+++.+.+.. ..+++++|||++|+|
T Consensus       213 ~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~H  275 (460)
T COG0076         213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGH  275 (460)
T ss_pred             EEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcc
Confidence            58999999999999999999999999999999999999988777766 579999999999999

>KOG0629|consensus

Probab=99.84  E-value=1.4e-21  Score=139.28  Aligned_cols=62  Identities=60%  Similarity=1.023  Sum_probs=61.0

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ||+|||..|++||++.|+++|++|++|+||||||||..++++++|+++.|+|+++|++|+||
T Consensus       259 aTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpH  320 (510)
T KOG0629|consen  259 ATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPH  320 (510)
T ss_pred             ecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHH
Confidence            69999999999999999999999999999999999999999999999999999999999999

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.80  E-value=1.9e-20  Score=137.25  Aligned_cols=62  Identities=29%  Similarity=0.393  Sum_probs=54.1

Q ss_pred             CCccccceeeeeCHHHHHHHH---HHcCc--EEEeccccccee--eec------------------------------cc
Q psy14030          1 MFPGTTVLGAFDPIPAIADIC---AEYDM--WLHVDAAWGGGA--LVS------------------------------RK   43 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~---~~~~~--~~HvDaa~gg~~--~~~------------------------------~~   43 (63)
                      ||+|||++|+|||+++|+++|   +++++  |+||||||||++  +++                              ++
T Consensus       284 ataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~  363 (608)
T TIGR03811       284 GVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISRE  363 (608)
T ss_pred             EEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHh
Confidence            689999999999999999999   56787  799999999986  222                              35


Q ss_pred             chhhhCCCCCCceeEecCC
Q psy14030         44 HRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus        44 ~~~~~~~i~~adSi~~d~h   62 (63)
                      +++.++++++||||++|||
T Consensus       364 ~~~~l~gle~ADSItvDpH  382 (608)
T TIGR03811       364 VYNAYKAISEAESVTIDPH  382 (608)
T ss_pred             HHHHHhcCcCceEEEeCcc
Confidence            6778899999999999999

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.80  E-value=1.8e-20  Score=135.19  Aligned_cols=62  Identities=47%  Similarity=0.749  Sum_probs=59.9

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||++|++||+++|+++|+++++|+||||||||+.++++++++++++++++|||++|+|
T Consensus       271 ataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~H  332 (522)
T TIGR03799       271 GVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAH  332 (522)
T ss_pred             EEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChh
Confidence            47899999999999999999999999999999999999999999999999999999999999

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN02263 serine decarboxylase

Probab=99.79  E-value=3.6e-20  Score=132.74  Aligned_cols=62  Identities=24%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCc-----EEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDM-----WLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~-----~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||.+|++|||++|.++|+++|+     |+||||||||+++++.+..+.+.+.+.+|||++|+|
T Consensus       234 ataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~H  300 (470)
T PLN02263        234 VNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGH  300 (470)
T ss_pred             EEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCc
Confidence            58999999999999999999999986     999999999998855544556777788999999999

>KOG0628|consensus

Probab=99.76  E-value=1.6e-19  Score=129.34  Aligned_cols=62  Identities=35%  Similarity=0.606  Sum_probs=60.9

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ||.|||.+.++|++.+|..+|+++++|+||||||+|.+.+||+++.+++|+|.|||++.++|
T Consensus       241 at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~h  302 (511)
T KOG0628|consen  241 ATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPH  302 (511)
T ss_pred             EeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChh
Confidence            68999999999999999999999999999999999999999999999999999999999998

>PLN03032 serine decarboxylase; Provisional

Probab=99.69  E-value=1.4e-17  Score=116.29  Aligned_cols=62  Identities=26%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcC-----cEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYD-----MWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~-----~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +++|||++|++||+++|+++|++++     +|+||||||||+.+.+.+..+.+...+.+|||++|+|
T Consensus       167 ~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~H  233 (374)
T PLN03032        167 VNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGH  233 (374)
T ss_pred             EEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcc
Confidence            3689999999999999999999996     6999999999988754333344445567999999999

>PRK02769 histidine decarboxylase; Provisional

Probab=99.67  E-value=4.4e-17  Score=113.62  Aligned_cols=62  Identities=24%  Similarity=0.238  Sum_probs=54.3

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcC---cEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYD---MWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~---~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||++|++||+++|+++|++++   +|+|||+||+++.+++.+.++.+...+.+|||++|+|
T Consensus       166 ~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~H  230 (380)
T PRK02769        166 ANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGH  230 (380)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCc
Confidence            4789999999999999999999998   7999999999988876655555555568999999999

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.67  E-value=2.3e-17  Score=116.77  Aligned_cols=61  Identities=30%  Similarity=0.369  Sum_probs=54.4

Q ss_pred             CCccccceeeeeCHHHHHHHHHHc------CcEEEecccccceee--ecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL--VSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~------~~~~HvDaa~gg~~~--~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||++|++||+++|+++|+++      ++|+|||+||+|+++  ..++.+..+. ++++||+++|+|
T Consensus       192 ~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~H  260 (431)
T TIGR01788       192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGH  260 (431)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECch
Confidence            478999999999999999999999      999999999999887  3566666664 899999999999

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.24  E-value=5.7e-12  Score=84.14  Aligned_cols=61  Identities=51%  Similarity=0.746  Sum_probs=52.1

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.++|.+|.++|+++|.++|+++++|+|+|++|+.+.......+....+++.+||+++++|
T Consensus       155 ~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~  215 (345)
T cd06450         155 TAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPH  215 (345)
T ss_pred             ecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchh
Confidence            5688999999999999999999999999999999887755544444456778999999987

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.07  E-value=1.4e-10  Score=82.07  Aligned_cols=54  Identities=24%  Similarity=0.342  Sum_probs=44.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..|||+|+||||+||.++|+++++++|+||+|+..-....-..     + .+|.+++|+|
T Consensus       149 ~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~-----~-~vD~ls~SaH  202 (386)
T COG1104         149 HANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEE-----L-GVDLLSFSAH  202 (386)
T ss_pred             ecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccc-----c-CcceEEeehh
Confidence            4799999999999999999999999999999997666443111     1 2789999888

>KOG1383|consensus

Probab=98.96  E-value=5.7e-10  Score=80.60  Aligned_cols=61  Identities=21%  Similarity=0.211  Sum_probs=52.7

Q ss_pred             CCccccceeeeeCHHHHHHHHHH-cCcEEEecccccceeee---cccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAE-YDMWLHVDAAWGGGALV---SRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~-~~~~~HvDaa~gg~~~~---~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.+|++.+|.+||+++|.+++.| |++.+|+|++.|||+..   .++.++.+ +++.+.||+.|+|
T Consensus       224 ~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF-r~p~V~Sisa~~H  288 (491)
T KOG1383|consen  224 GSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF-RVPGVTSISADGH  288 (491)
T ss_pred             EEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccccc-CCCCceeEeeccc
Confidence            35899999999999999999999 99999999999999984   23334444 7899999999998

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=98.93  E-value=9.9e-10  Score=73.99  Aligned_cols=61  Identities=33%  Similarity=0.500  Sum_probs=46.5

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeec-ccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVS-RKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~-~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.++|++|.++|+++|.++|+++++++|+|++|+++.+.. ++....-.....+||+++++|
T Consensus       158 ~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~  219 (371)
T PRK13520        158 IAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPH  219 (371)
T ss_pred             EcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCc
Confidence            3578999999999999999999999999999999876522 211111112456899999987

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.82  E-value=4.6e-09  Score=75.25  Aligned_cols=57  Identities=30%  Similarity=0.345  Sum_probs=42.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhh-CCC--CCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLL-TGI--ERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~-~~i--~~adSi~~d~h   62 (63)
                      .++...|..||+++|+++|+++++|+|+|+|||...   +.+.+.. +++  .++|+++.|+|
T Consensus       213 p~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~---~~~~~~~~~g~~~Grad~vv~s~h  272 (444)
T TIGR03531       213 TSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS---NKYMELINKAIKVGRVDAVVSSTD  272 (444)
T ss_pred             CCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC---hhhhhhhhccccccCCCeEEEeCc
Confidence            344556689999999999999999999999999633   2222222 233  36899999987

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=98.78  E-value=5.3e-09  Score=70.63  Aligned_cols=60  Identities=33%  Similarity=0.431  Sum_probs=45.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccc----hhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKH----RHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~----~~~~~~i~~adSi~~d~h   62 (63)
                      .++|.+|.++|+++|.++|+++++|+|+|+||+++.......    .........+||+++|+|
T Consensus       161 ~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~  224 (373)
T TIGR03812       161 AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPH  224 (373)
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECcc
Confidence            468999999999999999999999999999999775422110    011112346799999887

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02651 cysteine desulfurase

Probab=98.48  E-value=2.1e-07  Score=63.47  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=42.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+++||.++|+++|.++|+++|+++|+|++|+.......     +..+ .+|.+.+++|
T Consensus       146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~-----~~~~-~~D~~~~s~h  199 (364)
T PLN02651        146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVD-----VDDL-GVDLMSISGH  199 (364)
T ss_pred             CCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccC-----cccC-CCCEEEechh
Confidence            4578999999999999999999999999999986544322     1122 2688888877

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.29  E-value=1.1e-06  Score=60.83  Aligned_cols=54  Identities=26%  Similarity=0.349  Sum_probs=42.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..++++|.++|+++|.++|+++++++|+|++|+.......     +.+ ..+|.+++++|
T Consensus       150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~-----~~~-~~~D~~~~s~~  203 (402)
T TIGR02006       150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPIN-----VNE-LKVDLMSISGH  203 (402)
T ss_pred             CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccC-----ccc-cCCCEEEEehh
Confidence            4578899999999999999999999999999986544221     112 25788888876

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.27  E-value=2e-06  Score=51.20  Aligned_cols=57  Identities=30%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..++.+|...|+++|+++|+++++++++|.+++++........   .....+|.++.++|
T Consensus       100 ~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~d~~~~s~~  156 (170)
T cd01494         100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL---IPEGGADVVTFSLH  156 (170)
T ss_pred             cCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccc---cccccCCEEEEEcc
Confidence            4577899999999999999999999999999998777543311   12345788888776

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=98.20  E-value=2.2e-06  Score=58.06  Aligned_cols=54  Identities=20%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+|.+|.++|+++|.++|+++++++|+|++++......+     +.. ..+|++++++|
T Consensus       147 ~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~-~~~d~~~~s~~  200 (373)
T cd06453         147 HVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD-----VQD-LGCDFLAFSGH  200 (373)
T ss_pred             CcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee-----ccc-cCCCEEEeccc
Confidence            3577899999999999999999999999999975443211     111 14678888766

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.20  E-value=2e-06  Score=58.18  Aligned_cols=54  Identities=26%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..++.||.+.|+++|.++|+++++++++|++++.......     +. -..+|.+..++|
T Consensus       146 ~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~-----~~-~~~~D~~~~s~~  199 (353)
T TIGR03235       146 HVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD-----LS-ADRIDLISCSGH  199 (353)
T ss_pred             cccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc-----cc-ccCCCEEEeehh
Confidence            4678999999999999999999999999999886554322     11 124677777665

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>KOG1549|consensus

Probab=98.14  E-value=1.1e-06  Score=63.14  Aligned_cols=36  Identities=33%  Similarity=0.574  Sum_probs=32.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -|+++|+++|++||.++|+++++.+|+||||+....
T Consensus       190 Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i  225 (428)
T KOG1549|consen  190 VNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI  225 (428)
T ss_pred             cccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc
Confidence            478999999999999999999999999999986543

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.13  E-value=3.7e-06  Score=56.85  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+|.||.+.|+++|.++|+++++++++|++++.......     + .-..+|.+.+++|
T Consensus       145 ~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~-----~-~~~~~D~~~~s~~  198 (376)
T TIGR01977       145 HASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID-----M-TELAIDMLAFTGH  198 (376)
T ss_pred             CCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC-----c-hhcCCCEEEeccc
Confidence            4678999999999999999999999999999976544221     0 1134677777765

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.12  E-value=3.5e-06  Score=56.35  Aligned_cols=56  Identities=14%  Similarity=0.044  Sum_probs=42.4

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+|.+.|+++|+++|+++++++++|.||+..+.+.+..+... ....+|-+..++|
T Consensus       164 ~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~-~~~~~div~~S~h  219 (294)
T cd00615         164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA-AMAGADIVVQSTH  219 (294)
T ss_pred             CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch-hhcCCcEEEEchh
Confidence            5689999999999999999999999999997665554333222 1235677777766

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.12  E-value=4.1e-06  Score=57.08  Aligned_cols=53  Identities=23%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .++.+|.+.|+++|.++|+++|+++|+|++|+.......     +.. ..+|.+.+++|
T Consensus       145 ~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~-----~~~-~~~D~~~~s~~  197 (379)
T TIGR03402       145 ANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPID-----LKE-MNIDMLSLSGH  197 (379)
T ss_pred             ccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccC-----ccc-CCCCEEEEcHH
Confidence            578999999999999999999999999999975432111     111 24677777765

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.10  E-value=4.5e-06  Score=57.05  Aligned_cols=54  Identities=22%  Similarity=0.224  Sum_probs=40.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+|.||.+.|+++|.++++++|+++|+|++|+.......     + .-..+|.+..++|
T Consensus       148 ~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~-----~-~~~~~D~~~~s~~  201 (382)
T TIGR03403       148 WANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVD-----V-QKAGVDFLSFSAH  201 (382)
T ss_pred             cccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccC-----c-cccCCCEEEEcch
Confidence            3578999999999999999999999999999885433211     1 1123677777765

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK14012 cysteine desulfurase; Provisional

Probab=98.05  E-value=5.2e-06  Score=57.40  Aligned_cols=54  Identities=28%  Similarity=0.330  Sum_probs=41.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+++||.+.|+++|.++|+++++++++|++|+......+     ... ..+|.+++++|
T Consensus       152 ~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~-----~~~-~~~D~~~~s~~  205 (404)
T PRK14012        152 HVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPID-----LSK-LKVDLMSFSAH  205 (404)
T ss_pred             CcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccC-----ccc-CCCCEEEEehh
Confidence            3578899999999999999999999999999986444221     111 23677777766

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=97.95  E-value=1.3e-05  Score=55.33  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++++|.++|+++|.++|+++|+++|+|++|+...
T Consensus       167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~  201 (387)
T PRK09331        167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR  201 (387)
T ss_pred             CCCCCcccccHHHHHHHHHHcCCEEEEECCcccCC
Confidence            46789999999999999999999999999998644

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=97.95  E-value=1.3e-05  Score=56.77  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.+++|.+.|+++|.++|+++|+++|||++|+.......-...   .+..+|-++.++|
T Consensus       189 ~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~h  244 (452)
T PTZ00094        189 GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTH  244 (452)
T ss_pred             eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCc
Confidence            4678999999999999999999999999999876664321111   1336788888877

>PRK02948 cysteine desulfurase; Provisional

Probab=97.94  E-value=1.2e-05  Score=54.78  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|+||.+.|+++|.++|+++++++|+|+++...
T Consensus       146 ~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g  180 (381)
T PRK02948        146 HANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFG  180 (381)
T ss_pred             CCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcc
Confidence            46899999999999999999999999999987643

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.94  E-value=1.3e-05  Score=62.03  Aligned_cols=56  Identities=14%  Similarity=-0.064  Sum_probs=41.6

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+++..+..+|+++|+++++++|+|+|||+|+++.......     .+-..+|++..|+|
T Consensus       647 t~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~-----pg~~GADi~~~s~H  702 (954)
T PRK05367        647 TYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLAR-----PGDIGADVSHLNLH  702 (954)
T ss_pred             EcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCC-----hhhcCCCEEEecCc
Confidence            456776333589999999999999999999999755443221     13345899999887

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=97.89  E-value=1.9e-05  Score=54.15  Aligned_cols=54  Identities=17%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..++.+|.+.|+++|.++|+++++++++|++|+.......     +... .+|.+..++|
T Consensus       167 ~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~  220 (403)
T TIGR01979       167 HVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-----VQAL-DCDFYVFSGH  220 (403)
T ss_pred             cccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-----cccc-CCCEEEEecc
Confidence            4578999999999999999999999999999975433211     1111 3566666665

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=97.80  E-value=3e-05  Score=53.60  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..++.||.+.|+++|.++|+++++++++|++|+...
T Consensus       172 ~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~  207 (406)
T PRK09295        172 HVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH  207 (406)
T ss_pred             cchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc
Confidence            357899999999999999999999999999997654

>TIGR01814 kynureninase kynureninase

Probab=97.78  E-value=5.1e-05  Score=52.61  Aligned_cols=37  Identities=16%  Similarity=0.091  Sum_probs=33.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .-++++|.+.|+++|.++|+++|+++++|++|+....
T Consensus       179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~  215 (406)
T TIGR01814       179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV  215 (406)
T ss_pred             ccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc
Confidence            3578899999999999999999999999999987655

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=97.71  E-value=4.8e-05  Score=51.84  Aligned_cols=37  Identities=35%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .-.+.+|.+.|+++|.++|+++++++++|++|+....
T Consensus       147 ~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~  183 (371)
T PF00266_consen  147 HVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV  183 (371)
T ss_dssp             SBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS
T ss_pred             cccccccEEeeeceehhhhhccCCceeEechhccccc
Confidence            4568899999999999999999999999999987655

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK07179 hypothetical protein; Provisional

Probab=97.70  E-value=5.3e-05  Score=52.44  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      -++++|.+.|+++|.++|+++++++++|.+|+..
T Consensus       190 v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g  223 (407)
T PRK07179        190 VYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLG  223 (407)
T ss_pred             CCCCCCccccHHHHHHHHHHcCCEEEEECccccc
Confidence            3678999999999999999999999999999743

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=6.6e-05  Score=53.28  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=33.9

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +.-++.||.+.|+++|.++|+++|+|+-||++|+....
T Consensus       169 s~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~  206 (405)
T COG0520         169 SHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL  206 (405)
T ss_pred             ECccccccccchHHHHHHHHHHcCCEEEEECccccCcc
Confidence            34578999999999999999999999999999987554

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=97.67  E-value=4e-05  Score=52.62  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      -++++|.+.|+++|.++|+++++++|+|.+|+..
T Consensus       152 v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G  185 (370)
T PRK05937        152 VYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMG  185 (370)
T ss_pred             CCCCCCCccCHHHHHHHHHHcCCEEEEECCcccc
Confidence            4678999999999999999999999999999843

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.67  E-value=7e-05  Score=51.11  Aligned_cols=50  Identities=20%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             ceeeeeCH-HHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          7 VLGAFDPI-PAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         7 ~tG~id~i-~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .+|.+.|+ ++|+++|+++++++++|++++....+.+.      +...+|.+..++|
T Consensus       170 ~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~------~~~~~d~~~~s~~  220 (398)
T cd00613         170 TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP------GEYGADIVVGNLQ  220 (398)
T ss_pred             CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh------HHcCCCEEEeecc
Confidence            57999885 99999999999999999988654332221      1113677777766

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=97.60  E-value=6.7e-05  Score=53.79  Aligned_cols=51  Identities=29%  Similarity=0.161  Sum_probs=38.5

Q ss_pred             ceeee-eCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          7 VLGAF-DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         7 ~tG~i-d~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .+|.+ +|+++|+++|++++.+++||+|+....+.  ...   .+-..+|++..|+|
T Consensus       219 ~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g--~~~---~~~~GaD~~~~~~h  270 (481)
T PRK04366        219 TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG--KAR---PGDMGFDVVHLNLH  270 (481)
T ss_pred             CccccchHHHHHHHHHHHcCCEEEEEecChhhhcc--cCC---ccccCCCEEEEech
Confidence            68888 68999999999999999999998644221  111   12335799999987

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.54  E-value=0.00016  Score=49.21  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.+|.++|+++|.++|+++++++++|.||+..
T Consensus       148 p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g  181 (361)
T cd06452         148 VDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVG  181 (361)
T ss_pred             CCCCCeeeccHHHHHHHHHHcCCeEEEECCcccC
Confidence            4678999999999999999999999999999843

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.53  E-value=0.00013  Score=56.78  Aligned_cols=55  Identities=18%  Similarity=0.127  Sum_probs=42.1

Q ss_pred             CccccceeeeeC-HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDP-IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~-i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.++| +|.++| +++|+++++++|.++++|+|+.........     .+-..+|.+..|+|
T Consensus       635 T~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~-----Pg~~GaDi~~~s~H  690 (939)
T TIGR00461       635 TYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS-----PGDLGADVCHLNLH  690 (939)
T ss_pred             EeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC-----ccccCCCEEEecCC
Confidence            45667 799988 999999999999999999999653332221     24456788888877

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=97.53  E-value=8.1e-05  Score=51.18  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .++.||.+.|+++|.++|+++|+++++|++|+.
T Consensus       169 ~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~  201 (401)
T PRK10874        169 MSNVTGGCPDLARAITLAHQAGMVVMVDGAQGA  201 (401)
T ss_pred             CcccccCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence            478999999999999999999999999999974

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=97.52  E-value=0.00014  Score=50.66  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .-++.||.+.|+++|.++|+++++++++|++|+..
T Consensus       181 ~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g  215 (424)
T PLN02855        181 HVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVP  215 (424)
T ss_pred             CccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC
Confidence            35788999999999999999999999999999643

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=97.51  E-value=8.1e-05  Score=51.15  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.||.+.|+++|.++|+++++++++|++|+..
T Consensus       166 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~  199 (398)
T TIGR03392       166 MSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV  199 (398)
T ss_pred             ccccccccCCHHHHHHHHHHcCCEEEEEhhhhcC
Confidence            4789999999999999999999999999999743

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=97.46  E-value=0.00013  Score=47.98  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             ccccceeeeeCHHHHH---HHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIA---DICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~---~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+++.+|.+.|++++.   ++|+++++++++|.+|+++..
T Consensus       140 ~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~  179 (350)
T cd00609         140 NPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY  179 (350)
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence            3678899999877666   789999999999999988665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.46  E-value=0.00024  Score=47.30  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+.+|.+.|+++|.++|+++++++++|.+|+.
T Consensus       141 ~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~  173 (349)
T cd06454         141 VYSMDGDIAPLPELVDLAKKYGAILFVDEAHSV  173 (349)
T ss_pred             cccCCCCccCHHHHHHHHHHcCCEEEEEccccc
Confidence            346799999999999999999999999999973

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.41  E-value=0.00021  Score=48.83  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..++.+|.+.|+++|.++|+++++++++|+++..
T Consensus       164 ~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~  197 (397)
T TIGR01976       164 AASNTLGSIVDLAAITELVHAAGALVVVDAVHYA  197 (397)
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhc
Confidence            3578999999999999999999999999999854

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=97.40  E-value=0.00016  Score=49.42  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=29.5

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+++|.+.|+++|+++|+++++++++|.+|+.
T Consensus       180 ~~~tG~~~~l~~i~~la~~~~~~li~De~~~~  211 (393)
T TIGR01822       180 FSMDGVIAPLDEICDLADKYDALVMVDECHAT  211 (393)
T ss_pred             ccCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence            47899999999999999999999999999953

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=97.35  E-value=0.00036  Score=48.24  Aligned_cols=31  Identities=26%  Similarity=0.205  Sum_probs=28.6

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+.+|.+.|+++|.++|+++|+++++|++|+
T Consensus       159 ~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~  189 (363)
T TIGR01437       159 HCVQKSMLSVEDAAQVAQEHNLPLIVDAAAE  189 (363)
T ss_pred             CCCcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence            3468889999999999999999999999997

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PLN02721 threonine aldolase

Probab=97.31  E-value=0.00022  Score=47.65  Aligned_cols=56  Identities=14%  Similarity=0.041  Sum_probs=35.1

Q ss_pred             cceeeeeC---HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          6 TVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         6 t~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.+|.+-|   +++|.++|+++|+++++|+++........... ....++.+|++.+++|
T Consensus       149 np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~s  207 (353)
T PLN02721        149 NCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVP-VHRLVKAADSVSVCLS  207 (353)
T ss_pred             ccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCC-HHHHhhhCCEEEEecc
Confidence            45677654   78999999999999999998753221111111 1112345677777654

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=97.31  E-value=0.00022  Score=48.04  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..++.+|.+.|+++|.++|+++++++++|++|+.
T Consensus       132 ~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~  165 (356)
T cd06451         132 HNETSTGVLNPLEGIGALAKKHDALLIVDAVSSL  165 (356)
T ss_pred             ccCCCcccccCHHHHHHHHHhcCCEEEEeeehhc
Confidence            3567899999999999999999999999998863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=97.25  E-value=0.00029  Score=47.76  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=30.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+.||.+.|+++|.++|+++++++.+|++|+.
T Consensus       138 ~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~  170 (363)
T TIGR02326       138 CETTTGILNPIEAVAKLAHRHGKVTIVDAMSSF  170 (363)
T ss_pred             ecCCccccCcHHHHHHHHHHcCCEEEEEccccc
Confidence            467799999999999999999999999998864

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.23  E-value=0.00031  Score=47.40  Aligned_cols=33  Identities=27%  Similarity=0.572  Sum_probs=29.6

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+.+|.++++++|.++|+++++++++|.+|+.+
T Consensus       178 ~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g  210 (385)
T PRK05958        178 FSMDGDLAPLAELVALARRHGAWLLVDEAHGTG  210 (385)
T ss_pred             ccCCCCcCCHHHHHHHHHHhCCEEEEECccccc
Confidence            457899999999999999999999999999643

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.16  E-value=0.00059  Score=48.84  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.+|.+.|+++|+++|+++|+.+++|++|+....
T Consensus       165 ~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~  199 (437)
T PRK05613        165 ANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL  199 (437)
T ss_pred             CCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc
Confidence            45678999999999999999999999999976544

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=97.11  E-value=0.00041  Score=46.25  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      -+|.+|.+.|+++|.++|+++++++++|+++..
T Consensus       134 ~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~  166 (355)
T TIGR03301       134 HETTTGILNPLEAIAKVARSHGAVLIVDAMSSF  166 (355)
T ss_pred             cCCcccchhHHHHHHHHHHHcCCEEEEEecccc
Confidence            457789999999999999999999999997653

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.08  E-value=0.00055  Score=47.04  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+.+
T Consensus       155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g  188 (370)
T TIGR02539       155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVG  188 (370)
T ss_pred             CCCCCccccCHHHHHHHHHHcCCeEEEECccccC
Confidence            4678999999999999999999999999999864

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=97.08  E-value=0.00058  Score=47.10  Aligned_cols=36  Identities=28%  Similarity=0.198  Sum_probs=32.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|.++|+++|+++++|.+|+....
T Consensus       134 ~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~  169 (369)
T cd00614         134 PTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL  169 (369)
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence            467899999999999999999999999999986543

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=97.02  E-value=0.0014  Score=48.13  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+..+.+.|+++|+++|+++|.++.+|+||+..................+|=++.+.|
T Consensus       227 g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~h  285 (493)
T PRK13580        227 GYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTH  285 (493)
T ss_pred             CccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCCh
Confidence            44455668899999999999999999999998766643322211223456777776665

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=97.00  E-value=0.00071  Score=48.28  Aligned_cols=34  Identities=24%  Similarity=0.129  Sum_probs=30.9

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.+|.+.|+++|+++|+++++++++|++|+...
T Consensus       159 ~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~  192 (433)
T PRK08134        159 GNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPY  192 (433)
T ss_pred             CcccCcccCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            5789999999999999999999999999997543

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=97.00  E-value=0.0011  Score=45.48  Aligned_cols=32  Identities=19%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ++.+|...|+++|.++|+++++++++|++|..
T Consensus       169 ~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~  200 (402)
T cd00378         169 ASAYPRPIDFKRFREIADEVGAYLLVDMAHVA  200 (402)
T ss_pred             CcccCCCcCHHHHHHHHHhcCCEEEEEccchh
Confidence            44567888999999999999999999999743

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=97.00  E-value=0.00075  Score=46.60  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .++.+|.+.|+++|.++|+++++++.+|.+|+
T Consensus       186 ~~~~~G~~~~l~~i~~l~~~~~~~livDea~~  217 (402)
T TIGR01821       186 VYSMDGDIAPIEEICDLADKYGALTYLDEVHA  217 (402)
T ss_pred             CCCCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence            35789999999999999999999999999998

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=96.99  E-value=0.0013  Score=45.55  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=28.2

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+++|...|+++|.++|+++++++++|++|+.
T Consensus       173 ~~~~~~~~~~~~I~~la~~~~~~livD~a~~~  204 (416)
T PRK00011        173 ASAYSRPIDFKRFREIADEVGAYLMVDMAHIA  204 (416)
T ss_pred             CCcCCCccCHHHHHHHHHHcCCEEEEECcchh
Confidence            35678788999999999999999999999853

>PRK05939 hypothetical protein; Provisional

Probab=96.98  E-value=0.0006  Score=47.99  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -+|.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus       140 p~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~  174 (397)
T PRK05939        140 IANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW  174 (397)
T ss_pred             CCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence            46789999999999999999999999999997543

>PRK15029 arginine decarboxylase; Provisional

Probab=96.97  E-value=0.0014  Score=50.07  Aligned_cols=41  Identities=24%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchh
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH   46 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~   46 (63)
                      |.-|.+-++++|+++|.+++++++||-|||+.+.|.+.++.
T Consensus       322 TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~  362 (755)
T PRK15029        322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD  362 (755)
T ss_pred             CCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccc
Confidence            67899999999999999999999999999999999887763

>PRK09064 5-aminolevulinate synthase; Validated

Probab=96.97  E-value=0.00082  Score=46.39  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=29.2

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+++|.+.|+++|.++|+++++++.+|.+|+
T Consensus       188 ~s~~G~~~~l~~i~~l~~~~~~~livDEa~~  218 (407)
T PRK09064        188 YSMDGDIAPIAEICDLADKYNALTYLDEVHA  218 (407)
T ss_pred             CCCCccccCHHHHHHHHHHcCCEEEEECCCc
Confidence            5678999999999999999999999999997

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=96.93  E-value=0.0013  Score=47.53  Aligned_cols=56  Identities=14%  Similarity=0.073  Sum_probs=41.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+.++...|+++|.++|+++|.++++|+||+.......-...   .++.+|-++...|
T Consensus       190 ~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~---p~~~~Div~~t~h  245 (475)
T PLN03226        190 GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS---PFEYCDVVTTTTH  245 (475)
T ss_pred             ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC---CCCCCeEEEecCc
Confidence            4556888899999999999999999999999876654332211   1235777777665

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=96.92  E-value=0.00092  Score=45.45  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=29.9

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+.+|.+.|+++|.++|+++++++.+|.+|+.+
T Consensus       173 ~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~  205 (385)
T TIGR01825       173 FSMDGDVAPLPEIVELAERYGAVTYVDDAHGSG  205 (385)
T ss_pred             CcCCCCccCHHHHHHHHHHhCCEEEEECccccc
Confidence            467899999999999999999999999999654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=96.92  E-value=0.00033  Score=46.56  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+++++|.++|+++++++++|.||..
T Consensus       144 ~~~~l~~i~~~~~~~~~~livDea~~~  170 (338)
T cd06502         144 PLDELKAISALAKENGLPLHLDGARLA  170 (338)
T ss_pred             CHHHHHHHHHHHHHcCCeEeechHHHH
Confidence            357788899999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=96.90  E-value=0.0011  Score=44.23  Aligned_cols=33  Identities=24%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++.+|.+.|+++|.++|+++++++.+|++|+..
T Consensus       113 ~~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g  145 (352)
T cd00616         113 VHLYGNPADMDAIMAIAKRHGLPVIEDAAQALG  145 (352)
T ss_pred             ECCCCCcCCHHHHHHHHHHcCCeEEEECCCCCC
Confidence            456899999999999999999999999999743

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK06767 methionine gamma-lyase; Provisional

Probab=96.90  E-value=0.0011  Score=46.11  Aligned_cols=34  Identities=6%  Similarity=0.057  Sum_probs=30.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.+|.+-|+++|.++|+++++++++|.+|+..
T Consensus       155 p~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~  188 (386)
T PRK06767        155 PINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP  188 (386)
T ss_pred             CCCCCceecCHHHHHHHHHHcCCEEEEECCCccc
Confidence            4678999999999999999999999999999743

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=96.89  E-value=0.001  Score=45.11  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+|.||.+.|+++|.++|+++++++.+|+++..
T Consensus       140 ~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~  172 (368)
T PRK13479        140 CETTTGILNPLDEIAAVAKRHGKRLIVDAMSSF  172 (368)
T ss_pred             ccCccccccCHHHHHHHHHHcCCEEEEEccccc
Confidence            356899999999999999999999999987643

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=96.89  E-value=0.001  Score=46.48  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+...
T Consensus       155 p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~  189 (390)
T PRK08133        155 PSNPLTELADIAALAEIAHAAGALLVVDNCFCTPA  189 (390)
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            47889999999999999999999999999986543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=96.78  E-value=0.0017  Score=45.20  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|.++|+++++++.+|.+|+.+.
T Consensus       148 p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~  182 (380)
T TIGR01325       148 PSNPLGELVDIAALAELAHAIGALLVVDNVFATPV  182 (380)
T ss_pred             CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            46789999999999999999999999999998543

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=96.77  E-value=0.0014  Score=45.48  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ++++|.+.|+++|.++|+++++++.+|.+|+
T Consensus       187 ~~~~G~~~~l~~i~~l~~~~~~~livDea~~  217 (406)
T PRK13393        187 YSMDGDIAPIAEICDVAEKHGAMTYLDEVHA  217 (406)
T ss_pred             CCCCCchhCHHHHHHHHHHcCCEEEEECCcc
Confidence            5788999999999999999999999999997

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=96.77  E-value=0.0015  Score=45.99  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|.++|+++++++.+|.+|+.+.
T Consensus       158 p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~  192 (398)
T PRK08249        158 PTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI  192 (398)
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence            46889999999999999999999999999998654

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=96.74  E-value=0.0017  Score=47.30  Aligned_cols=52  Identities=8%  Similarity=0.120  Sum_probs=37.0

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccceee-ecccchhhhCC----------CCCCceeEecCC
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGAL-VSRKHRHLLTG----------IERPQNRSEDTP   62 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~-~~~~~~~~~~~----------i~~adSi~~d~h   62 (63)
                      +.++++|.++|+++|+++|.|+|....-+ |..+....+.+          ...+|.++.|+|
T Consensus       197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~  259 (460)
T PRK13237        197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK  259 (460)
T ss_pred             HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence            45889999999999999999999875433 44322111111          357899998876

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=96.73  E-value=0.0016  Score=43.32  Aligned_cols=32  Identities=31%  Similarity=0.698  Sum_probs=29.3

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+.+|.+.|+++|.++|+++++++.+|.+|+.
T Consensus       156 ~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~  187 (360)
T TIGR00858       156 FSMDGDIAPLPQLVALAERYGAWLMVDDAHGT  187 (360)
T ss_pred             ccCCCCCcCHHHHHHHHHHcCcEEEEECcccc
Confidence            36789999999999999999999999999974

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=96.72  E-value=0.0016  Score=44.19  Aligned_cols=31  Identities=29%  Similarity=0.597  Sum_probs=28.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+.+|.+.++++|.++|+++++++++|.+|+
T Consensus       184 ~~~~G~~~~~~~l~~la~~~~~~li~De~~~  214 (397)
T PRK06939        184 FSMDGDIAPLPEICDLADKYDALVMVDDSHA  214 (397)
T ss_pred             cCCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence            3568889999999999999999999999996

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=96.72  E-value=0.0017  Score=45.06  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=30.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      -++.+|.+-|+++|.++|+++++++.+|.+|+
T Consensus       187 ~~n~tG~~~~l~~i~~l~~~~~~~livDea~~  218 (410)
T PRK13392        187 VYSMDGDIAPIEAICDLADRYNALTYVDEVHA  218 (410)
T ss_pred             CCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence            46789999999999999999999999999998

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.71  E-value=0.0018  Score=46.33  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      -++.+|.+.|+++|+++|+++|+++.||++|+..
T Consensus       164 ~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~  197 (436)
T PRK07812        164 ISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP  197 (436)
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence            4678999999999999999999999999999754

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=96.69  E-value=0.0019  Score=46.94  Aligned_cols=51  Identities=8%  Similarity=0.107  Sum_probs=36.8

Q ss_pred             eCHHHHHHHHHHcCcEEEecccccc-eeeecccchhhhC----------CCCCCceeEecCC
Q psy14030         12 DPIPAIADICAEYDMWLHVDAAWGG-GALVSRKHRHLLT----------GIERPQNRSEDTP   62 (63)
Q Consensus        12 d~i~~i~~i~~~~~~~~HvDaa~gg-~~~~~~~~~~~~~----------~i~~adSi~~d~h   62 (63)
                      .++++|.++|+++|+++|.|+|... -.++..+..+...          -.+.+|+++.++|
T Consensus       191 ~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~  252 (450)
T TIGR02618       191 ANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGK  252 (450)
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeec
Confidence            6799999999999999999999876 3444432211111          1457899998876

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=96.67  E-value=0.0012  Score=47.57  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSR   42 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~   42 (63)
                      -|..|.+-|+++|+++|++++++++||-|||+.+.|.+
T Consensus       177 PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~  214 (417)
T PF01276_consen  177 PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP  214 (417)
T ss_dssp             S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG
T ss_pred             CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCC
Confidence            36779999999999999999999999999999998884

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=96.67  E-value=0.0035  Score=44.18  Aligned_cols=55  Identities=16%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .+..|..-|+.+|.++|+++++++++|+|++..........   ..+..+|-+..+.|
T Consensus       176 ~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~---~~~~~~Di~~~s~~  230 (416)
T PRK13034        176 FSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHP---NPFPHAHVVTTTTH  230 (416)
T ss_pred             CCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCC---CCCCCceEEEEeCc
Confidence            45577788999999999999999999999876555433211   12344666665544

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=96.67  E-value=0.0019  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +|.+|.+.|+++|+++|+++++++.+|.+|+..
T Consensus       152 ~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~  184 (418)
T TIGR01326       152 GNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP  184 (418)
T ss_pred             CCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence            578999999999999999999999999999754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=96.67  E-value=0.0019  Score=45.27  Aligned_cols=35  Identities=6%  Similarity=-0.035  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+-|+++|.++|+++++++++|.+|+...
T Consensus       153 p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~  187 (391)
T TIGR01328       153 PANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM  187 (391)
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc
Confidence            46789999999999999999999999999997543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=96.66  E-value=0.0022  Score=44.99  Aligned_cols=35  Identities=23%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+-|+++|.++|+++++++.+|.+|+.+.
T Consensus       159 p~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~  193 (398)
T PRK07504        159 PTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPL  193 (398)
T ss_pred             CCCCCcEecCHHHHHHHHHHcCCEEEEECCccccc
Confidence            57889999999999999999999999999997544

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=96.64  E-value=0.0023  Score=44.55  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus       140 psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~  174 (378)
T TIGR01329       140 PTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL  174 (378)
T ss_pred             CCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence            46789999999999999999999999999986543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02242 methionine gamma-lyase

Probab=96.63  E-value=0.002  Score=45.68  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      -+|.+|.+.|+++|.++|+++++++.+|.+|+.
T Consensus       172 p~NPtG~v~dl~~I~~la~~~gi~livDea~~~  204 (418)
T PLN02242        172 ISNPTLTVADIPELARIAHEKGVTVVVDNTFAP  204 (418)
T ss_pred             CCCCCCcccCHHHHHHHHHHhCCEEEEECCCCc
Confidence            457899999999999999999999999999964

>PRK07050 cystathionine beta-lyase; Provisional

Probab=96.57  E-value=0.002  Score=45.22  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.++++|+++|+++++++++|.+|+...
T Consensus       159 p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~  193 (394)
T PRK07050        159 PGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGL  193 (394)
T ss_pred             CCCCCccHhhHHHHHHHHHHcCCEEEEECCccccc
Confidence            35678999999999999999999999999997644

>PRK06460 hypothetical protein; Provisional

Probab=96.55  E-value=0.0026  Score=44.26  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.+|.+-|+++|.++|+++++++.+|.+|+.+
T Consensus       139 p~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~  172 (376)
T PRK06460        139 ITNPLLRVVDITELSKVCKENGSILIVDATFSTP  172 (376)
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc
Confidence            4678999999999999999999999999999864

>PRK07671 cystathionine beta-lyase; Provisional

Probab=96.53  E-value=0.0027  Score=44.27  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.+|.+.|+++|.++|+++++++.+|.+|+..
T Consensus       143 P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~  176 (377)
T PRK07671        143 PTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP  176 (377)
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence            4678999999999999999999999999999753

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=96.52  E-value=0.002  Score=44.69  Aligned_cols=33  Identities=30%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++.+|...|+++|.++|+++|+++++|++|+..
T Consensus       128 ~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g  160 (379)
T PRK11658        128 VHYAGAPADLDAIRAIGERYGIPVIEDAAHAVG  160 (379)
T ss_pred             eCCCCCcCCHHHHHHHHHHcCCeEEEECCCccC
Confidence            456899999999999999999999999999743

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=96.52  E-value=0.0031  Score=44.13  Aligned_cols=35  Identities=20%  Similarity=0.145  Sum_probs=31.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.+|.+-|+++|.++|+++++++.+|.+|+...
T Consensus       146 p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~  180 (385)
T PRK08574        146 MTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPL  180 (385)
T ss_pred             CCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence            46789999999999999999999999999997543

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=96.51  E-value=0.0025  Score=43.05  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+.|++++.++++++++++++|.+|..+.
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~  201 (361)
T PRK00950        167 PNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA  201 (361)
T ss_pred             CCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC
Confidence            57899999999999999999999999999998654

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.51  E-value=0.0032  Score=44.68  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      -+|.+|.+-|+++|.++|+++++++.+|.+|+..
T Consensus       157 p~NptG~v~dl~~I~~la~~~gi~livD~a~a~~  190 (427)
T PRK05994        157 IANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASP  190 (427)
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCcccc
Confidence            3678999999999999999999999999999854

>PRK08064 cystathionine beta-lyase; Provisional

Probab=96.50  E-value=0.0033  Score=43.98  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=32.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|.++|+++++++-+|.+|+.+..
T Consensus       147 p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~  182 (390)
T PRK08064        147 PSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLL  182 (390)
T ss_pred             CCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccc
Confidence            578899999999999999999999999999987543

>PLN02409 serine--glyoxylate aminotransaminase

Probab=96.50  E-value=0.0022  Score=44.73  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             ccceeeeeCHHHHHHH--HHHcCcEEEecccccc
Q psy14030          5 TTVLGAFDPIPAIADI--CAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~tG~id~i~~i~~i--~~~~~~~~HvDaa~gg   36 (63)
                      .|.||.+.|+++|.++  |+++++++.+|++|+.
T Consensus       147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~  180 (401)
T PLN02409        147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSI  180 (401)
T ss_pred             cccccccCCHHHHHHHHhhhccCcEEEEEccccc
Confidence            5679999999999999  9999999999999874

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=96.49  E-value=0.0024  Score=45.89  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             ccccee----eeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLG----AFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG----~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+|.+|    ..+++++|+++|+++|++++.|+|+.
T Consensus       186 p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~  221 (460)
T PRK13238        186 TNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF  221 (460)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            355666    35668899999999999999999874

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.003  Score=45.11  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAW   34 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~   34 (63)
                      ..|.||+++|+++|++++++++..+-||+.-
T Consensus       140 ~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVs  170 (383)
T COG0075         140 NETSTGVLNPLKEIAKAAKEHGALLIVDAVS  170 (383)
T ss_pred             ccCcccccCcHHHHHHHHHHcCCEEEEEecc
Confidence            5689999999999999999999999999953

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=96.44  E-value=0.0038  Score=43.65  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|+++|+++++++.+|.+|+...
T Consensus       155 p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~  189 (388)
T PRK07811        155 PTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY  189 (388)
T ss_pred             CCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence            46788999999999999999999999999998654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=96.39  E-value=0.0047  Score=48.51  Aligned_cols=35  Identities=20%  Similarity=-0.052  Sum_probs=32.2

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      |.++|..|.++|+++|+++++++|..+++|+||..
T Consensus       673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~  707 (993)
T PLN02414        673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMN  707 (993)
T ss_pred             ECCCccccccchHHHHHHHHHHcCCEEEEEecCHH
Confidence            46789999999999999999999999999999954

>PRK09028 cystathionine beta-lyase; Provisional

Probab=96.37  E-value=0.0027  Score=44.96  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|+++|+++++++-+|.+|+..+.
T Consensus       155 psNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~  190 (394)
T PRK09028        155 PGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN  190 (394)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence            467799999999999999999999999999987543

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=96.37  E-value=0.0034  Score=44.00  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEe--ccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHV--DAA   33 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~Hv--Daa   33 (63)
                      |.||.++|+++|+++|+++++|+++  |+.
T Consensus       214 n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~  243 (447)
T PRK00451        214 NFFGVIEDLEEIAEIAHAGGALFIVGVDPV  243 (447)
T ss_pred             CCCCeeCCHHHHHHHHHHCCCEEEEEcChH
Confidence            6799999999999999999999998  643

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=96.35  E-value=0.0031  Score=44.17  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=32.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|+++|+++++++-+|.+|+....
T Consensus       144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~  179 (377)
T TIGR01324       144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL  179 (377)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence            467889999999999999999999999999986544

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07503 methionine gamma-lyase; Provisional

Probab=96.32  E-value=0.0049  Score=43.33  Aligned_cols=34  Identities=18%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.+|.+-|+++|.++|+++++++.+|.+|+..
T Consensus       159 p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~  192 (403)
T PRK07503        159 PANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP  192 (403)
T ss_pred             CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence            4678999999999999999999999999999754

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=96.31  E-value=0.0022  Score=45.33  Aligned_cols=51  Identities=25%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ceeeeeCHHH---HHHHHHHcCcEEEecccccceeeec--ccchhhhCCCCCCceeEec
Q psy14030          7 VLGAFDPIPA---IADICAEYDMWLHVDAAWGGGALVS--RKHRHLLTGIERPQNRSED   60 (63)
Q Consensus         7 ~tG~id~i~~---i~~i~~~~~~~~HvDaa~gg~~~~~--~~~~~~~~~i~~adSi~~d   60 (63)
                      |.|++-|++|   |.++|+++++.+|+|+|=-...+..  +..+ .+  -..+||+++-
T Consensus       142 e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~-~~--~~~~D~v~~~  197 (342)
T COG2008         142 EGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK-TI--KSYVDSVSFC  197 (342)
T ss_pred             CCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH-HH--HhhCCEEEEe
Confidence            5588766555   5557889999999999744333322  1111 11  2345777763

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=96.30  E-value=0.0018  Score=44.18  Aligned_cols=48  Identities=19%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccceeee--cccchhhhCCCCCCceeEecC
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGALV--SRKHRHLLTGIERPQNRSEDT   61 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~~--~~~~~~~~~~i~~adSi~~d~   61 (63)
                      ++.+++|.++|+++|+++|+|+|=-...+.  -...++..   ..+|++++++
T Consensus       144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~  193 (290)
T PF01212_consen  144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGG  193 (290)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEET
T ss_pred             HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEE
Confidence            456777777889999999999985443332  12233333   6679998875

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=96.29  E-value=0.0052  Score=42.98  Aligned_cols=34  Identities=12%  Similarity=0.149  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.+|.+.|+++|.++|+++++++.+|.+|+..
T Consensus       143 P~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~  176 (380)
T PRK06176        143 PSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP  176 (380)
T ss_pred             CCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence            4788999999999999999999999999999864

>PRK05967 cystathionine beta-lyase; Provisional

Probab=96.27  E-value=0.0032  Score=44.68  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.++.+.|+++|+++|+++|+++-||.+|+....
T Consensus       158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~  193 (395)
T PRK05967        158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY  193 (395)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee
Confidence            356789999999999999999999999999987543

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.25  E-value=0.0049  Score=43.97  Aligned_cols=33  Identities=27%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      -+|.+|.+-|+++|.++|+++++++.+|.+|+.
T Consensus       158 p~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~  190 (431)
T PRK08248        158 IGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS  190 (431)
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence            357899999999999999999999999999974

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=96.24  E-value=0.0032  Score=46.05  Aligned_cols=52  Identities=13%  Similarity=0.183  Sum_probs=34.6

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccce-eeecccchh-----hhCC-----CCCCceeEecC
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGG-ALVSRKHRH-----LLTG-----IERPQNRSEDT   61 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~-~~~~~~~~~-----~~~~-----i~~adSi~~d~   61 (63)
                      .++++.++.++|+++|+.+|.|+|=-.- +++..+...     ..+.     .+.+||++++.
T Consensus       202 slenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~sl  264 (467)
T TIGR02617       202 SLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSA  264 (467)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEc
Confidence            4677889999999999999999975442 333222111     1111     37789999874

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=96.21  E-value=0.0054  Score=43.24  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=32.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|+++|.++|+++++++.+|.+|+...
T Consensus       147 P~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~  181 (388)
T PRK08861        147 PSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPV  181 (388)
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc
Confidence            57889999999999999999999999999998654

>PRK08361 aspartate aminotransferase; Provisional

Probab=96.11  E-value=0.007  Score=41.66  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|-+|+.+..
T Consensus       175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~  213 (391)
T PRK08361        175 PNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY  213 (391)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEccccccee
Confidence            5789999999   88888889999999999999987643

>PRK05968 hypothetical protein; Provisional

Probab=96.09  E-value=0.0045  Score=43.27  Aligned_cols=34  Identities=15%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.++.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       157 t~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~  190 (389)
T PRK05968        157 TSWVFELQDVAALAALAKRHGVVTMIDNSWASPV  190 (389)
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence            4567778999999999999999999999997654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=96.06  E-value=0.0067  Score=42.06  Aligned_cols=33  Identities=15%  Similarity=-0.020  Sum_probs=29.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+|.+|.+.|+++|.++|+++++++.||.+|+.
T Consensus       141 p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~  173 (366)
T PRK07582        141 PSNPGLDVCDLAALAAAAHAAGALLVVDNTTAT  173 (366)
T ss_pred             CCCCCCCccCHHHHHHHHHHcCCEEEEECCCCC
Confidence            356788899999999999999999999999863

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=96.04  E-value=0.0052  Score=42.47  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=30.9

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      |++++|.+   .++++|.++++++++++.+|-||+.+.
T Consensus       144 g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~  181 (346)
T TIGR03576       144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARV  181 (346)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence            56778887   899999999999999999999998654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02509 cystathionine beta-lyase

Probab=96.03  E-value=0.0054  Score=44.42  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|+++|+++++++.+|.+|+....
T Consensus       226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~  261 (464)
T PLN02509        226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL  261 (464)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence            568899999999999999999999999999976543

>PLN02656 tyrosine transaminase

Probab=95.97  E-value=0.0048  Score=42.97  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++.+|.+|+.+..
T Consensus       178 P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~  216 (409)
T PLN02656        178 PGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAF  216 (409)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence            47889988   6788999999999999999999997653

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=95.91  E-value=0.0085  Score=41.17  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.+|...|+++|.++|+++++++.+|++|+.+.
T Consensus       128 ~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~  161 (380)
T TIGR03588       128 VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGA  161 (380)
T ss_pred             eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccC
Confidence            4567889999999999999999999999997543

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.91  E-value=0.0097  Score=42.34  Aligned_cols=35  Identities=23%  Similarity=0.098  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.+|.+-|+++|.++|+++++++-+|.+|+...
T Consensus       152 p~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~  186 (425)
T PRK06084        152 IGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV  186 (425)
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            45889999999999999999999999999998543

>PRK07324 transaminase; Validated

Probab=95.86  E-value=0.0095  Score=41.03  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|+++|+++++++.+|.+|..+.
T Consensus       162 p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~  199 (373)
T PRK07324        162 ANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD  199 (373)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence            4688998888   8888999999999999999997654

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=95.85  E-value=0.0073  Score=42.12  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -++.+|..-|+++|.++|+++++++.+|++|+.+.
T Consensus       125 p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~  159 (376)
T TIGR02379       125 PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMS  159 (376)
T ss_pred             EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCC
Confidence            45678999999999999999999999999987543

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07505 hypothetical protein; Provisional

Probab=95.85  E-value=0.0093  Score=41.33  Aligned_cols=32  Identities=25%  Similarity=0.616  Sum_probs=29.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      +++.+|.+.|+++|.++|+++++++.+|-+|+
T Consensus       188 p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~  219 (402)
T PRK07505        188 GVYSMGGIAPVKELLRLQEKYGLFLYIDDAHG  219 (402)
T ss_pred             cccccCCcCCHHHHHHHHHHcCCEEEEECccc
Confidence            56788999999999999999999999999984

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=95.79  E-value=0.01  Score=41.17  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.+.
T Consensus       178 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  215 (403)
T TIGR01265       178 PSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMV  215 (403)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence            4688998854   8889999999999999999998765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=95.79  E-value=0.012  Score=41.89  Aligned_cols=36  Identities=19%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcC--cEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYD--MWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~--~~~HvDaa~gg~~~   39 (63)
                      -+|.+|.+.||++|+++|++++  +.+-||.+|+....
T Consensus       156 psNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~  193 (395)
T PRK08114        156 PGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL  193 (395)
T ss_pred             CCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence            4678999999999999999984  99999999987554

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=95.73  E-value=0.013  Score=41.36  Aligned_cols=36  Identities=11%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+-|+++|+++|+++++++-+|.+|+....
T Consensus       164 p~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~  199 (403)
T PRK07810        164 PSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL  199 (403)
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence            467899999999999999999999999999985443

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=95.72  E-value=0.011  Score=41.83  Aligned_cols=35  Identities=11%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|..+.
T Consensus       199 P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~  236 (430)
T PLN00145        199 PNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLT  236 (430)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence            4789999998   7778888899999999999998754

>PRK06108 aspartate aminotransferase; Provisional

Probab=95.69  E-value=0.0064  Score=41.28  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   ++++|.++|+++++++.+|-+|+.+..
T Consensus       167 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~  205 (382)
T PRK06108        167 PNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYY  205 (382)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence            467788654   577888889999999999999987654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=95.69  E-value=0.014  Score=40.69  Aligned_cols=35  Identities=17%  Similarity=0.023  Sum_probs=31.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.+|.+-|+++|+++|+++++++-+|.+|+...
T Consensus       145 P~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~  179 (364)
T PRK07269        145 PTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPI  179 (364)
T ss_pred             CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            57789999999999999999999999999986543

>PLN02724 Molybdenum cofactor sulfurase

Probab=95.69  E-value=0.014  Score=44.54  Aligned_cols=54  Identities=19%  Similarity=0.069  Sum_probs=35.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHc--------CcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY--------DMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~--------~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..++.+|.+.|+++|..+++..        ++++++|+||+.......     +..+ .+|=+++++|
T Consensus       200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD-----v~~~-~~Dfl~~S~H  261 (805)
T PLN02724        200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRY-PADFVVVSFY  261 (805)
T ss_pred             ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC-----hhhc-CCCEEEEecc
Confidence            4578999999999876555532        357999999986555322     1111 2566666666

>PRK06234 methionine gamma-lyase; Provisional

Probab=95.66  E-value=0.012  Score=41.30  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHHc--CcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|.++++++  ++++-+|.+|+.+..
T Consensus       158 P~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~  195 (400)
T PRK06234        158 PANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYI  195 (400)
T ss_pred             CCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhc
Confidence            578899999999999999997  899999999986543

>PRK05764 aspartate aminotransferase; Provisional

Probab=95.65  E-value=0.01  Score=40.57  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=28.5

Q ss_pred             ccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +|.||.+   +++++|.++|+++++++.+|.+|+.+.
T Consensus       174 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  210 (393)
T PRK05764        174 SNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV  210 (393)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHCCcEEEEecccccee
Confidence            5678887   458888999999999999999998654

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=95.65  E-value=0.013  Score=40.39  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=30.1

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+-|    +++|.++|+++++++.+|-+|.|+.
T Consensus       193 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  230 (398)
T PRK03244        193 QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG  230 (398)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence            567888877    8999999999999999999998754

>PRK05957 aspartate aminotransferase; Provisional

Probab=95.63  E-value=0.012  Score=40.55  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+.+   +++|+++|+++++++-+|.+|+.+..
T Consensus       169 p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~  207 (389)
T PRK05957        169 PNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTY  207 (389)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccC
Confidence            4788999888   88888999999999999999986643

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=95.63  E-value=0.013  Score=40.23  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+-|    +++|.++|++|++++.+|-+|.++.
T Consensus       188 ~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g  225 (400)
T PTZ00125        188 QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG  225 (400)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            467888887    9999999999999999999997653

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=95.61  E-value=0.016  Score=40.69  Aligned_cols=36  Identities=22%  Similarity=0.118  Sum_probs=32.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|+++|.++|+++++++-+|.+|+.+..
T Consensus       146 P~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~  181 (386)
T PRK08045        146 PSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL  181 (386)
T ss_pred             CCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence            578899999999999999999999999999986543

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=95.60  E-value=0.013  Score=41.33  Aligned_cols=34  Identities=9%  Similarity=0.035  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.+|.+.++++|.++|+++++++-+|.+|+..
T Consensus       154 P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~  187 (405)
T PRK08776        154 PSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP  187 (405)
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence            4678999999999999999999999999999754

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=95.58  E-value=0.011  Score=40.93  Aligned_cols=35  Identities=29%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.+|.+.++++|+++|+++++++-+|.+|+..+
T Consensus       145 P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~  179 (366)
T PRK08247        145 PTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV  179 (366)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence            45678999999999999999999999999996544

>PRK07568 aspartate aminotransferase; Provisional

Probab=95.57  E-value=0.014  Score=40.02  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.+.
T Consensus       171 p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~  208 (397)
T PRK07568        171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFV  208 (397)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence            4678998765   7888888999999999999998764

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=95.52  E-value=0.015  Score=40.68  Aligned_cols=31  Identities=16%  Similarity=0.396  Sum_probs=28.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+++|.+-|+++|.++|+++++++++|-+++
T Consensus       148 ~~~~G~i~~l~~i~~l~~~~g~~livDe~~~  178 (392)
T PLN03227        148 YKNTGTLAPLKELVALKEEFHYRLILDESFS  178 (392)
T ss_pred             cCCCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence            3568999999999999999999999999997

>PRK09082 methionine aminotransferase; Validated

Probab=95.49  E-value=0.0093  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             ccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.||.+   +++++|.++|+++++++.+|.+|+.+..
T Consensus       173 ~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~  210 (386)
T PRK09082        173 HNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF  210 (386)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhcc
Confidence            5788876   7889999999999999999999976543

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=95.48  E-value=0.0065  Score=42.09  Aligned_cols=35  Identities=23%  Similarity=0.087  Sum_probs=30.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      --+|.||.+.|+++|++  +++|+.+.||++|+....
T Consensus       144 h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~  178 (378)
T PRK03080        144 WNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL  178 (378)
T ss_pred             ecCCccceeccchhhcc--ccCCCeEEEecccccccC
Confidence            34788999999999999  788999999999876544

>PLN02271 serine hydroxymethyltransferase

Probab=95.45  E-value=0.032  Score=41.94  Aligned_cols=50  Identities=12%  Similarity=0.019  Sum_probs=37.3

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      -.-|+++++++|+++|+++.+|+||.........+..   .++.+|-++...|
T Consensus       311 r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~s---P~~~aDvvt~TTH  360 (586)
T PLN02271        311 REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVN---PFDYCDIVTSTTH  360 (586)
T ss_pred             CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCC---CCcCCcEEEeCCc
Confidence            3457999999999999999999999766654443332   2335788887776

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=95.37  E-value=0.014  Score=41.91  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccc
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+++++|+++|++++++++.|+|...
T Consensus       172 ~~~l~~i~eia~~~gi~li~DaAr~~  197 (431)
T cd00617         172 MANLREVRELAHKYGIPVVLDAARFA  197 (431)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEchhhH
Confidence            34677889999999999999999654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02822 serine palmitoyltransferase

Probab=95.36  E-value=0.018  Score=41.47  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=28.4

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      +++|.+-|+++|+++|++|++++-+|-+|+
T Consensus       256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s  285 (481)
T PLN02822        256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNS  285 (481)
T ss_pred             CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence            558999999999999999999999999998

>PLN02624 ornithine-delta-aminotransferase

Probab=95.35  E-value=0.036  Score=39.89  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+-|    +++|.++|++||+++.+|-+|.|+.
T Consensus       234 ~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G  271 (474)
T PLN02624        234 QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA  271 (474)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence            457788877    9999999999999999999998754

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=95.35  E-value=0.018  Score=38.91  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|+++|+++++++.+|-+|..+.
T Consensus       134 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  171 (330)
T TIGR01140       134 PNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT  171 (330)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence            4788999988   5556677788999999999998765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=95.30  E-value=0.023  Score=39.78  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|+++|.++|+++++++-+|.+|+.+.
T Consensus       145 p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~  179 (382)
T TIGR02080       145 PSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA  179 (382)
T ss_pred             CCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            57899999999999999999999999999997543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=95.29  E-value=0.02  Score=39.20  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+.+|.+-|    +++|.++|+++++++.+|-++.++
T Consensus       201 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~  237 (413)
T cd00610         201 QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF  237 (413)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            455688777    999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=95.24  E-value=0.021  Score=39.43  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.+|...++++|.++|+++++++-+|++|+.+.
T Consensus       126 ~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~  159 (375)
T PRK11706        126 VHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMS  159 (375)
T ss_pred             eCCCCCccCHHHHHHHHHHcCCEEEEECcccccc
Confidence            4568888999999999999999999999997554

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=95.23  E-value=0.02  Score=39.45  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+-|    +++|+++|+++++++-+|.+|.|+.
T Consensus       197 ~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g  234 (401)
T PRK00854        197 QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLG  234 (401)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            456787776    9999999999999999999998753

>PRK07550 hypothetical protein; Provisional

Probab=95.21  E-value=0.02  Score=39.26  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|.+|+.+.
T Consensus       172 P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~  209 (386)
T PRK07550        172 PNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFD  209 (386)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence            3578888765   7888999999999999999998653

>PLN02483 serine palmitoyltransferase

Probab=95.08  E-value=0.024  Score=40.98  Aligned_cols=31  Identities=23%  Similarity=0.538  Sum_probs=28.7

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +.+|.+.++++|.++|+++++++.+|-+|+.
T Consensus       251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~  281 (489)
T PLN02483        251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSI  281 (489)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcCcc
Confidence            6688999999999999999999999999973

>PRK09265 aminotransferase AlaT; Validated

Probab=94.95  E-value=0.025  Score=39.14  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|..+.
T Consensus       177 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  214 (404)
T PRK09265        177 PNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKIL  214 (404)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhcc
Confidence            4788999888   8888899999999999999998654

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=94.92  E-value=0.029  Score=38.87  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+-|    +++|.++|+++++++.+|-+|.++.
T Consensus       196 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g  233 (396)
T PRK04073        196 QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLG  233 (396)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCC
Confidence            467787755    8999999999999999999999864

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=94.77  E-value=0.039  Score=42.25  Aligned_cols=54  Identities=20%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             cceeeeeCHHHHHHHHHHcCcE-EEecccccceeeecccchhhh--CCCCCCcee---EecCC
Q psy14030          6 TVLGAFDPIPAIADICAEYDMW-LHVDAAWGGGALVSRKHRHLL--TGIERPQNR---SEDTP   62 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~-~HvDaa~gg~~~~~~~~~~~~--~~i~~adSi---~~d~h   62 (63)
                      |.-|.+-++++|++++   ++. +|+|-|||+.+.|.+.+++..  .+...+|..   +-|.|
T Consensus       307 TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStH  366 (713)
T PRK15399        307 TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTH  366 (713)
T ss_pred             CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehh
Confidence            6789999999999999   555 599999999998888665322  222346776   66666

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=94.74  E-value=0.062  Score=37.23  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++|.+-|    +++|.++|+++++++.+|-++.|+.
T Consensus       197 ~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g  233 (401)
T TIGR01885       197 GEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLG  233 (401)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            45677777    9999999999999999999987653

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=94.63  E-value=0.045  Score=37.80  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++.+|.+|+.+..
T Consensus       175 P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~  213 (391)
T PRK07309        175 PANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTY  213 (391)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceee
Confidence            47788975   4588888999999999999999987653

>PRK06225 aspartate aminotransferase; Provisional

Probab=94.61  E-value=0.029  Score=38.45  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+   +++++|.++|+++++++.+|.+|..+
T Consensus       166 p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  202 (380)
T PRK06225        166 PLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF  202 (380)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHH
Confidence            35678885   45888999999999999999998754

>PRK08912 hypothetical protein; Provisional

Probab=94.56  E-value=0.036  Score=38.05  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|+.+.
T Consensus       168 p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~  205 (387)
T PRK08912        168 PLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVV  205 (387)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence            4788998776   6668888999999999999997543

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=94.53  E-value=0.015  Score=40.23  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      |-..|.||.+.|+++|   ++++++.+-||++|.....
T Consensus       135 ~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~  169 (361)
T TIGR01366       135 AHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL  169 (361)
T ss_pred             cccCCccceecccccc---cccCCCeEEEEcCccccCC
Confidence            4578999999999988   4788999999999876544

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK08363 alanine aminotransferase; Validated

Probab=94.49  E-value=0.038  Score=38.15  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|.+|+.+.
T Consensus       175 p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~  212 (398)
T PRK08363        175 PNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMT  212 (398)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhc
Confidence            4678898766   8888889999999999999998653

>PRK10534 L-threonine aldolase; Provisional

Probab=94.46  E-value=0.037  Score=37.05  Aligned_cols=32  Identities=28%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             cccceeeeeCHHHHH---HHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDPIPAIA---DICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~i~~i~---~i~~~~~~~~HvDaa~g   35 (63)
                      .|+.+|.+-|.++|.   ++|+++++++++|-||.
T Consensus       136 ~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~  170 (333)
T PRK10534        136 ENTHNGKVLPREYLKQAWEFTRERNLALHVDGARI  170 (333)
T ss_pred             ecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHH
Confidence            356679988877665   57778899999999876

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=94.44  E-value=0.043  Score=42.05  Aligned_cols=38  Identities=21%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccch
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHR   45 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~   45 (63)
                      |.-|.+-++++|++++..++  +|+|-|||+.+.|.+.++
T Consensus       307 TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~  344 (714)
T PRK15400        307 TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE  344 (714)
T ss_pred             CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccC
Confidence            67899999999999998776  899999999998888765

>PRK13578 ornithine decarboxylase; Provisional

Probab=94.41  E-value=0.046  Score=41.89  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             cceeeeeCHHHHHHH-HHHcCcEEEecccccceeeecccc
Q psy14030          6 TVLGAFDPIPAIADI-CAEYDMWLHVDAAWGGGALVSRKH   44 (63)
Q Consensus         6 t~tG~id~i~~i~~i-~~~~~~~~HvDaa~gg~~~~~~~~   44 (63)
                      |.-|.+-++++|+++ +++.+ ++|+|-|||+.+.|.+.+
T Consensus       292 TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~  330 (720)
T PRK13578        292 TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMM  330 (720)
T ss_pred             CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccc
Confidence            677999999999999 56677 999999999999888754

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=94.30  E-value=0.053  Score=36.80  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|.+|+.+.
T Consensus       145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  182 (350)
T TIGR03537       145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIY  182 (350)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccc
Confidence            5789998888   8888888999999999999998643

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07682 hypothetical protein; Validated

Probab=94.20  E-value=0.051  Score=37.10  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|+.+..
T Consensus       163 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~  201 (378)
T PRK07682        163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY  201 (378)
T ss_pred             CCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhccc
Confidence            4688898754   88888899999999999999997653

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=94.20  E-value=0.049  Score=39.19  Aligned_cols=34  Identities=12%  Similarity=-0.016  Sum_probs=30.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.++.+-|+++|+++|+++|+++-+|.+|+..
T Consensus       156 pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP  189 (432)
T PRK06702        156 LGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP  189 (432)
T ss_pred             CCCccccccCHHHHHHHHHHcCCEEEEECCCCch
Confidence            3577888889999999999999999999999743

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=94.19  E-value=0.048  Score=36.59  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|++++.++++..  ++++.+|.+|+.+.
T Consensus       151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~  187 (346)
T TIGR01141       151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFS  187 (346)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhc
Confidence            468999999999999999987  99999999998543

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK12414 putative aminotransferase; Provisional

Probab=94.11  E-value=0.036  Score=38.19  Aligned_cols=35  Identities=9%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+   +++++|.++|+++++++-+|.+|.-+.
T Consensus       171 p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~  208 (384)
T PRK12414        171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVV  208 (384)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence            46888986   678888999999999999999998643

>PRK07683 aminotransferase A; Validated

Probab=94.10  E-value=0.045  Score=37.74  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   ++++|.++|+++++++.+|.+|..+..
T Consensus       170 p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~  208 (387)
T PRK07683        170 PSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY  208 (387)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccccccee
Confidence            467888874   478888899999999999999997643

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=94.02  E-value=0.059  Score=36.95  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    ++++.++|+++++++.+|-++.|+.
T Consensus       175 ~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g  212 (375)
T PRK04260        175 QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMG  212 (375)
T ss_pred             ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            455677655    8999999999999999999998754

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=94.02  E-value=0.051  Score=38.82  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=28.3

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +..|...++++|.++|+++++++.+|++|+...
T Consensus       167 ~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~  199 (438)
T PRK15407        167 HTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGS  199 (438)
T ss_pred             CCCCChhhHHHHHHHHHHCCCEEEEECccchhh
Confidence            346777899999999999999999999986543

>PLN00175 aminotransferase family protein; Provisional

Probab=94.01  E-value=0.048  Score=38.20  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   .+++|.++|+++++|+.+|-+|..+..
T Consensus       196 p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~  234 (413)
T PLN00175        196 PHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF  234 (413)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence            467888875   477788888999999999999987643

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=93.87  E-value=0.069  Score=36.19  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CHHHHHHHHHHcCcEEEeccccccee
Q psy14030         13 PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        13 ~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.++|+++++++.+|.+|.++.
T Consensus       192 ~l~~i~~l~~~~~~~~i~De~~~~~~  217 (379)
T TIGR00707       192 FLKALREICKDKDALLIFDEVQTGIG  217 (379)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCC
Confidence            48999999999999999999998753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>KOG0053|consensus

Probab=93.87  E-value=0.067  Score=38.73  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+..+-||++|+++|+++|+.+-||.++++++.
T Consensus       171 PsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~  206 (409)
T KOG0053|consen  171 PSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN  206 (409)
T ss_pred             CCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence            467888999999999999999999999999998743

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=93.75  E-value=0.077  Score=36.32  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++.+|-+|..+.
T Consensus       175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~  212 (385)
T PRK09276        175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIA  212 (385)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhhee
Confidence            46889998885   677777889999999999998764

>PRK05942 aspartate aminotransferase; Provisional

Probab=93.74  E-value=0.069  Score=36.87  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+.
T Consensus       179 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~  216 (394)
T PRK05942        179 PSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELA  216 (394)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence            4788999887   7788888999999999999998654

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=93.73  E-value=0.065  Score=37.02  Aligned_cols=35  Identities=11%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|..+.
T Consensus       177 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  214 (401)
T TIGR01264       177 PSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMV  214 (401)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence            4678998854   7778888889999999999998765

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=93.68  E-value=0.07  Score=38.18  Aligned_cols=34  Identities=29%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.+=|+++|.+++++|+.|+-||=|++..++
T Consensus       182 SMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~  215 (388)
T COG0156         182 SMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL  215 (388)
T ss_pred             cCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc
Confidence            4678899999999999999999999999886554

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=93.63  E-value=0.073  Score=36.42  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+.
T Consensus       173 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~  210 (383)
T TIGR03540       173 PNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT  210 (383)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence            4788999888   6888888999999999999998654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=93.61  E-value=0.077  Score=36.14  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|+++|+++++++-+|.+|..+.
T Consensus       151 p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  188 (356)
T PRK08056        151 PNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFI  188 (356)
T ss_pred             CcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence            4788999888   7788888999999999999997764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=93.60  E-value=0.067  Score=38.57  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|.-+.
T Consensus       290 P~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~  327 (517)
T PRK13355        290 PNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLV  327 (517)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence            4789999888   7888888999999999999998654

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=93.59  E-value=0.083  Score=36.78  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-   .+++|.++|+++++++.+|-+|..+.
T Consensus       186 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  223 (412)
T PTZ00433        186 PSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV  223 (412)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence            467888754   47777888899999999999998654

>PRK07777 aminotransferase; Validated

Probab=93.50  E-value=0.087  Score=36.16  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-   ++++|.++|+++++++.+|-+|..+..
T Consensus       168 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~  206 (387)
T PRK07777        168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVF  206 (387)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhccc
Confidence            357888864   588889999999999999999986553

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=93.48  E-value=0.091  Score=37.76  Aligned_cols=56  Identities=13%  Similarity=0.098  Sum_probs=35.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+..=-.-|+++++++|++.|.++++|+++-........++..+   +.+|-++.+.|
T Consensus       176 G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~---~~ADvvt~sTh  231 (399)
T PF00464_consen  176 GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF---PYADVVTGSTH  231 (399)
T ss_dssp             E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC---CTSSEEEEESS
T ss_pred             CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc---ccceEEEeecc
Confidence            333333456899999999999999999999865555444444333   45888888877

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK08175 aminotransferase; Validated

Probab=93.30  E-value=0.083  Score=36.48  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=28.9

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++.+|-+|+.+.
T Consensus       173 p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~  210 (395)
T PRK08175        173 PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV  210 (395)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence            36789987776   788888899999999999997644

>PRK08354 putative aminotransferase; Provisional

Probab=93.22  E-value=0.093  Score=35.18  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=27.4

Q ss_pred             cccceeeeeCHHHH---HHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAI---ADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i---~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++   .++|+++++|+.+|-+|..|.
T Consensus       126 P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~  163 (311)
T PRK08354        126 PNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFV  163 (311)
T ss_pred             CCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence            46889998775555   555678899999999998764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=93.17  E-value=0.07  Score=36.71  Aligned_cols=38  Identities=26%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      +-+...|...++++|.++|+++|+++-.|+|++.....
T Consensus       118 ~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~  155 (363)
T PF01041_consen  118 LVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARY  155 (363)
T ss_dssp             EEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EE
T ss_pred             EEecCCCCcccHHHHHHHHHHcCCcEEEccccccCcee
Confidence            34567788899999999999999999999999875543

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK03321 putative aminotransferase; Provisional

Probab=93.07  E-value=0.09  Score=35.50  Aligned_cols=36  Identities=14%  Similarity=0.082  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-|.+++.+++++  +++++.+|.+|..+..
T Consensus       154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~  191 (352)
T PRK03321        154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVR  191 (352)
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhcc
Confidence            46889999999999999987  5899999999987654

>PRK06434 cystathionine gamma-lyase; Validated

Probab=93.07  E-value=0.11  Score=36.68  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.++.+.|+++|+++|+++++  -||++|+...
T Consensus       158 snpt~~v~Di~~I~~la~~~~l--vVD~t~~s~~  189 (384)
T PRK06434        158 TNPTLKVPDIKNVSSFCHENDV--IVDATFASPY  189 (384)
T ss_pred             CCCCceeecHHHHHHHHHHcCe--EEECCCCCcc
Confidence            5678899999999999999984  5699987543

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=93.01  E-value=0.17  Score=36.63  Aligned_cols=27  Identities=15%  Similarity=0.080  Sum_probs=24.3

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+-|+++|+++|+++|+.+.+|++.|.
T Consensus       230 ~~~dl~~I~~la~~~g~~vivD~~sG~  256 (454)
T TIGR00474       230 EEVSIAELVALGREHGLPVMEDLGSGS  256 (454)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEECCCcc
Confidence            478999999999999999999997654

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=92.97  E-value=0.097  Score=35.48  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-+.+++.++++..  ++++.+|.+|..+.
T Consensus       163 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~  199 (367)
T PRK02731        163 PNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYV  199 (367)
T ss_pred             CCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhc
Confidence            468999999999999999875  89999999987654

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=92.95  E-value=0.12  Score=36.13  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|..+..
T Consensus       179 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~  217 (409)
T PLN00143        179 PGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF  217 (409)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHcCCeEEEEcccccccc
Confidence            4788999877   66677778899999999999987653

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=92.94  E-value=0.12  Score=36.31  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+.|.+-|    +++|+++|+++++.+.+|-+|.|+..
T Consensus       190 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GR  227 (395)
T PRK03715        190 GEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGR  227 (395)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence            45566766    99999999999999999999998543

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=92.92  E-value=0.11  Score=35.40  Aligned_cols=35  Identities=14%  Similarity=0.023  Sum_probs=27.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|.+|+.+.
T Consensus       151 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  188 (357)
T TIGR03539       151 PGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELG  188 (357)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence            4678887655   6668888899999999999997543

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07681 aspartate aminotransferase; Provisional

Probab=92.46  E-value=0.15  Score=35.27  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=30.0

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+..
T Consensus       175 P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~  213 (399)
T PRK07681        175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYF  213 (399)
T ss_pred             CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhee
Confidence            4788999877   67777788999999999999997653

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=92.42  E-value=0.11  Score=36.81  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             ccceeeeeCHHHHHHHHHHcC-cEEEecccccceeee
Q psy14030          5 TTVLGAFDPIPAIADICAEYD-MWLHVDAAWGGGALV   40 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~-~~~HvDaa~gg~~~~   40 (63)
                      +|.+.-+-||++|+++++++| +.+-||.+++..+.+
T Consensus       150 sNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~  186 (386)
T PF01053_consen  150 SNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQ  186 (386)
T ss_dssp             BTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC
T ss_pred             CCcccccccHHHHHHHHHHhCCceEEeeccccceeee
Confidence            566788999999999999998 999999999987554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=92.42  E-value=0.16  Score=34.68  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +.+|.++|+++++++-+|-+|..+.
T Consensus       150 P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~  187 (354)
T PRK06358        150 PNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFL  187 (354)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccC
Confidence            4788888776   6677777889999999999998655

>PRK04311 selenocysteine synthase; Provisional

Probab=92.42  E-value=0.28  Score=35.68  Aligned_cols=28  Identities=14%  Similarity=0.037  Sum_probs=24.3

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..-|+++|+++|+++|+.+.+|++.|.+
T Consensus       235 ~~~dl~eI~~lak~~gi~vivD~gsG~l  262 (464)
T PRK04311        235 KEVSLAELAALGKEHGLPVVYDLGSGSL  262 (464)
T ss_pred             CcCCHHHHHHHHHHcCCeEEEECCCccc
Confidence            4679999999999999999999975543

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=92.37  E-value=0.18  Score=35.12  Aligned_cols=28  Identities=14%  Similarity=0.233  Sum_probs=24.6

Q ss_pred             eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+.+++|+++|+++|+++.+|=+|.|+.
T Consensus       199 ~~~l~~l~~lc~~~g~llI~DEv~tG~G  226 (397)
T TIGR03246       199 PAFLKGLRELCDRHNALLIFDEVQTGVG  226 (397)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence            3559999999999999999999997763

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=92.37  E-value=0.16  Score=34.13  Aligned_cols=34  Identities=24%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             cccceeeeeCHHHHHHHHHHc-CcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEY-DMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~-~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.+++.++++++ ++++.+|-+|..+
T Consensus       153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~  187 (353)
T PRK05387        153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYVDF  187 (353)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccccc
Confidence            579999999999999999876 8999999998654

>PRK07337 aminotransferase; Validated

Probab=92.36  E-value=0.17  Score=34.79  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=28.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+.
T Consensus       172 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  209 (388)
T PRK07337        172 PSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLS  209 (388)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence            4678998665   6777788889999999999988654

>KOG1359|consensus

Probab=92.36  E-value=0.16  Score=36.27  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++-|-+-|+++|.+++++||..+-+|-+++-++.
T Consensus       204 SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~  237 (417)
T KOG1359|consen  204 SMDGDIAPLEEISQLAKKYGALLFIDECHATGFF  237 (417)
T ss_pred             ccCCCcccHHHHHHHHHhcCcEEEEeecccceee
Confidence            4568899999999999999999999999987664

>PRK08960 hypothetical protein; Provisional

Probab=92.32  E-value=0.17  Score=34.76  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=27.8

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+   +|+++|+++++++-+|-+|..+.
T Consensus       174 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~  211 (387)
T PRK08960        174 PANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLT  211 (387)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            478899987755   55556788999999999998753

>PRK09148 aminotransferase; Validated

Probab=92.05  E-value=0.16  Score=35.32  Aligned_cols=35  Identities=9%  Similarity=0.077  Sum_probs=29.1

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++-+|-+|+.+.
T Consensus       174 P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~  211 (405)
T PRK09148        174 PSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIY  211 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence            47889998886   567777889999999999998764

>PRK06348 aspartate aminotransferase; Provisional

Probab=92.01  E-value=0.21  Score=34.39  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|-+|..+..
T Consensus       171 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~  209 (384)
T PRK06348        171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF  209 (384)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccccccee
Confidence            3677887765   67777788899999999999998654

>PRK06207 aspartate aminotransferase; Provisional

Probab=91.94  E-value=0.21  Score=34.78  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+.
T Consensus       187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~  224 (405)
T PRK06207        187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLL  224 (405)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence            4788999887   6667778889999999999998754

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=91.93  E-value=0.11  Score=35.36  Aligned_cols=35  Identities=9%  Similarity=-0.006  Sum_probs=28.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+.
T Consensus       157 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  194 (364)
T PRK07865        157 PSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELG  194 (364)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhc
Confidence            4678887644   6777788899999999999998654

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=91.84  E-value=0.18  Score=35.57  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             CccccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          2 FPGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         2 t~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +-.+|.||++=+   +++|+++|+++++|+-+|-+|..+..
T Consensus       170 n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~y  210 (393)
T COG0436         170 NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY  210 (393)
T ss_pred             eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhccc
Confidence            346889998766   66777788899999999999987665

>PRK06290 aspartate aminotransferase; Provisional

Probab=91.79  E-value=0.2  Score=35.22  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++-+|-+|+.+.
T Consensus       188 P~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~  225 (410)
T PRK06290        188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALT  225 (410)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhce
Confidence            47899998885   666667889999999999999764

>PTZ00377 alanine aminotransferase; Provisional

Probab=91.78  E-value=0.16  Score=36.24  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|+++|+++++++-+|-+|..+.
T Consensus       227 P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~  264 (481)
T PTZ00377        227 PGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI  264 (481)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence            3688999888   7888888899999999999998644

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=91.52  E-value=0.14  Score=34.99  Aligned_cols=26  Identities=23%  Similarity=0.426  Sum_probs=23.7

Q ss_pred             CHHHHHHHHHHcCcEEEeccccccee
Q psy14030         13 PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        13 ~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.++|+++++++.+|-+|.++.
T Consensus       204 ~l~~l~~l~~~~~~~lI~DE~~~g~g  229 (396)
T PRK02627        204 YLQALRELCDENGILLILDEVQTGMG  229 (396)
T ss_pred             HHHHHHHHHHHcCCEEEEechhcCCC
Confidence            48999999999999999999998764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=91.43  E-value=0.15  Score=35.01  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -+.+++|+++|+++++++.+|-+|.|+..
T Consensus       195 ~~~l~~l~~l~~~~g~~lI~DEv~~g~g~  223 (389)
T PRK01278        195 DEFLKGLRQLCDENGLLLIFDEVQCGMGR  223 (389)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            45799999999999999999999987643

>PLN02955 8-amino-7-oxononanoate synthase

Probab=91.33  E-value=0.25  Score=36.29  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.+-|+++|.+++++|+..+-+|=|++.+.+
T Consensus       260 SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~  293 (476)
T PLN02955        260 SMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC  293 (476)
T ss_pred             CCCCCcCCHHHHHHHHHHcCcEEEEcccccCcee
Confidence            5678899999999999999999999999986554

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=91.30  E-value=0.24  Score=34.43  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         12 DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        12 d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.+++|.++|+++++++.+|=+|.++.
T Consensus       205 ~~l~~l~~l~~~~g~~lI~DEv~~g~g  231 (403)
T PRK05093        205 EFLQGLRELCDQHNALLIFDEVQTGMG  231 (403)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            349999999999999999999998753

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=91.22  E-value=0.23  Score=34.45  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+.
T Consensus       182 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~  219 (402)
T TIGR03542       182 PNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFI  219 (402)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhc
Confidence            4678888777   7778888889999999999998754

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=91.06  E-value=0.28  Score=33.51  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         12 DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        12 d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.+++|.++|+++++++.+|-+|.|+.
T Consensus       188 ~~l~~l~~l~~~~~~~lI~DEv~~g~g  214 (377)
T PRK02936        188 AFLQEVQTLCKKFGALLIIDEVQTGIG  214 (377)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            349999999999999999999998754

>PTZ00376 aspartate aminotransferase; Provisional

Probab=90.95  E-value=0.18  Score=35.06  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=28.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+=+   +++|.++|+++++++-+|-+|..+..
T Consensus       185 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~  223 (404)
T PTZ00376        185 AHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS  223 (404)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence            4677887654   56667778899999999999987654

>PRK12566 glycine dehydrogenase; Provisional

Probab=90.74  E-value=0.39  Score=38.11  Aligned_cols=33  Identities=15%  Similarity=-0.049  Sum_probs=27.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .++..+..+|+++|++++++.|..+++|+|+..
T Consensus       650 Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~  682 (954)
T PRK12566        650 PSTHGVYEEGIREICEVVHQHGGQVYMDGANLN  682 (954)
T ss_pred             cCcCceecchHHHHHHHHHHcCCEEEEEeeChh
Confidence            344445557799999999999999999999963

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=90.70  E-value=0.29  Score=33.71  Aligned_cols=35  Identities=11%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+.
T Consensus       174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~  211 (393)
T TIGR03538       174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY  211 (393)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence            4788888777   6777788889999999999998654

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>KOG1357|consensus

Probab=90.66  E-value=0.19  Score=37.32  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=30.3

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.++++.++.++.|+|..++|.|.|..+.+.
T Consensus       287 smEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~  320 (519)
T KOG1357|consen  287 SMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAM  320 (519)
T ss_pred             eccCeecccHHHHHhhccccEEEEeecccccccc
Confidence            4789999999999999999999999999866554

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=90.61  E-value=0.32  Score=32.67  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             cccceeeeeCHHHHHHH---HHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADI---CAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i---~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .++.||..=+.+++.++   |+++++++-+|-+|+.+..-
T Consensus       157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~  196 (363)
T PF00155_consen  157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFG  196 (363)
T ss_dssp             SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred             cccccccccccccccchhhhhcccccceeeeeceeccccC
Confidence            36778876665555555   99999999999999987764

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=90.51  E-value=0.27  Score=33.40  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++ +++++.+|.+|..+.
T Consensus       149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~  182 (337)
T PRK03967        149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS  182 (337)
T ss_pred             CCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc
Confidence            5789999999999999995 699999999998753

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=90.46  E-value=0.22  Score=35.60  Aligned_cols=33  Identities=24%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .-.|..-++++|.++|++||+++-.|+||+...
T Consensus       130 hl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga  162 (374)
T COG0399         130 HLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGA  162 (374)
T ss_pred             hhccCCCCHHHHHHHHHHcCCeEEEEcchhccC
Confidence            345667799999999999999999999987543

>PRK07049 methionine gamma-lyase; Validated

Probab=90.31  E-value=0.36  Score=34.36  Aligned_cols=36  Identities=8%  Similarity=0.094  Sum_probs=31.1

Q ss_pred             cccceeeeeCHHHHHHHHHH------cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~------~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|++++.+++++      +++++-+|-+|.++..
T Consensus       183 P~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~  224 (427)
T PRK07049        183 PANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF  224 (427)
T ss_pred             CCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc
Confidence            57899999999999999987      7899999999876543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=90.23  E-value=0.3  Score=33.06  Aligned_cols=35  Identities=9%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++.  +++++-+|-+|..+.
T Consensus       160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~  196 (359)
T PRK03158        160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYV  196 (359)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhc
Confidence            47899999999999999987  589999999998755

>PLN02187 rooty/superroot1

Probab=90.20  E-value=0.35  Score=34.66  Aligned_cols=36  Identities=8%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+..
T Consensus       213 P~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f  251 (462)
T PLN02187        213 PNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF  251 (462)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence            4688998776   77778888899999999999987543

>KOG2862|consensus

Probab=90.14  E-value=0.23  Score=35.52  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             ccccceeeeeC-HHHHHHHHHHcCcEEEeccc
Q psy14030          3 PGTTVLGAFDP-IPAIADICAEYDMWLHVDAA   33 (63)
Q Consensus         3 ~Gtt~tG~id~-i~~i~~i~~~~~~~~HvDaa   33 (63)
                      =|.+.||+++| ++...++|++|+..+-||++
T Consensus       150 hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~V  181 (385)
T KOG2862|consen  150 HGDSSTGVLQDLLAISGELCHKHEALLLVDTV  181 (385)
T ss_pred             ecCccccccchHHHHHHHHhhcCCeEEEEech
Confidence            47899999999 77777899999999999985

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=90.10  E-value=0.27  Score=35.44  Aligned_cols=26  Identities=46%  Similarity=0.649  Sum_probs=20.4

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccc
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      -|++.+|+++|++|+++.-+..|||.
T Consensus       171 ~D~i~~IakiC~~~~IPhlvNnAYgv  196 (389)
T PF05889_consen  171 PDDIEEIAKICKEYDIPHLVNNAYGV  196 (389)
T ss_dssp             ---HHHHHHHHHHHT--EEEEGTTTT
T ss_pred             CccHHHHHHHHHHcCCceEEccchhh
Confidence            36699999999999999999999997

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PLN02397 aspartate transaminase

Probab=90.07  E-value=0.28  Score=34.56  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=28.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+..
T Consensus       203 P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~  241 (423)
T PLN02397        203 AHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS  241 (423)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence            4688898755   55567778899999999999988753

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=90.01  E-value=0.3  Score=34.63  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=31.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -..+.|.+.|-+.++++|++|++++-+.+||...-+
T Consensus       165 ~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm  200 (382)
T COG1103         165 VDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRM  200 (382)
T ss_pred             cCCCcCCchhhHHHHHHHHHcCCceEeecceeeccc
Confidence            356788999999999999999999999999976555

>KOG1368|consensus

Probab=89.70  E-value=0.17  Score=36.10  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=19.1

Q ss_pred             eeCHHHHHHHHHHcCcEEEeccccc
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ++.+.+|.++|++.++.+|+|+|--
T Consensus       174 le~~~~v~~lak~~glkLH~DGARi  198 (384)
T KOG1368|consen  174 LEELDRVKALAKRHGLKLHMDGARI  198 (384)
T ss_pred             HHHHHHHHHHHhccCCeeecchhhh
Confidence            3345566778899999999999743

>PRK07908 hypothetical protein; Provisional

Probab=89.51  E-value=0.35  Score=32.71  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=28.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.++|.+++++ +.++.+|.+|.-+
T Consensus       148 p~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~  180 (349)
T PRK07908        148 PTNPTSVLHPAEQLLALRRP-GRILVVDEAFADA  180 (349)
T ss_pred             CCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhh
Confidence            57899999999999999965 7788999999865

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=89.45  E-value=0.41  Score=32.62  Aligned_cols=35  Identities=17%  Similarity=0.114  Sum_probs=31.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -+|.||.+-+.+++.++++.+++++-+|-+|+.+.
T Consensus       169 p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~  203 (368)
T PRK03317        169 PNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFR  203 (368)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhc
Confidence            36889999999999999999999999999998764

>PRK08068 transaminase; Reviewed

Probab=89.24  E-value=0.41  Score=32.93  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=27.5

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.+   +|.++|+++++++-+|-+|+.+
T Consensus       176 P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~  212 (389)
T PRK08068        176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAI  212 (389)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhh
Confidence            468899988875   5556778999999999999764

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=88.64  E-value=0.53  Score=31.88  Aligned_cols=35  Identities=17%  Similarity=0.033  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++..+.++.+|.+|..+.
T Consensus       162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~  196 (356)
T PRK04870        162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFA  196 (356)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhc
Confidence            47899999999999999887788999999997653

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=88.59  E-value=0.51  Score=32.66  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=26.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+-
T Consensus       188 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~  223 (416)
T PRK09440        188 PTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP  223 (416)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc
Confidence            3578888766   56667778899999999999974

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=88.49  E-value=0.55  Score=32.76  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +|.+-+    +++|.++|+++++++-+|=+|.|+
T Consensus       208 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~  241 (423)
T TIGR00713       208 MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF  241 (423)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc
Confidence            576666    789999999999999999999877

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=88.46  E-value=0.52  Score=33.29  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=27.4

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +.|.+-|    +++|.++|++|++.+-+|=+|.|+
T Consensus       209 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~  243 (426)
T PRK00062        209 NMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF  243 (426)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc
Confidence            4577777    999999999999999999999876

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=88.28  E-value=0.62  Score=33.58  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=32.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+.-+.||.+|+++++++|+.+-||-+|+..++
T Consensus       158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~  193 (396)
T COG0626         158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL  193 (396)
T ss_pred             CCCcccccccHHHHHHHHHhcCCEEEEECCcccccc
Confidence            466888899999999999999999999999998665

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=87.91  E-value=1.1  Score=32.83  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccceeee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      +-|.+-|    +++|+++|++||+.+-+|=++.||...
T Consensus       272 ~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRt  309 (504)
T PLN02760        272 AGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRL  309 (504)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCccc
Confidence            3467777    999999999999999999999877553

>PRK06836 aspartate aminotransferase; Provisional

Probab=87.87  E-value=0.64  Score=32.14  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=27.4

Q ss_pred             cccceeeeeC---HHHHHHHHHH------cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAE------YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~------~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|   +++|+++|++      +++++-+|-+|..+.
T Consensus       177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~  220 (394)
T PRK06836        177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV  220 (394)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence            4788999877   5555556777      799999999998753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=87.61  E-value=0.64  Score=31.61  Aligned_cols=34  Identities=18%  Similarity=0.003  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.+++.+++++.+.++-+|-+|+.+
T Consensus       157 p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~  190 (351)
T PRK14807        157 PNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF  190 (351)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh
Confidence            5788999999999999999888888899999765

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=87.39  E-value=0.73  Score=31.14  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++-+|-+|.-+.
T Consensus       131 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~  168 (332)
T PRK06425        131 PDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFV  168 (332)
T ss_pred             CCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence            57889987775   555556678899999999998765

>PRK06107 aspartate aminotransferase; Provisional

Probab=87.32  E-value=0.43  Score=33.08  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             cccceeeeeC---HHHHHHHHHHc-CcEEEecccccce
Q psy14030          4 GTTVLGAFDP---IPAIADICAEY-DMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~-~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+   +++|+++|+++ ++++.+|-+|+.+
T Consensus       175 p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l  212 (402)
T PRK06107        175 PSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHI  212 (402)
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence            4788997765   56667778887 9999999999854

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=87.11  E-value=0.74  Score=33.55  Aligned_cols=34  Identities=26%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             ceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          7 VLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         7 ~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .-+.+-|++.|+++|++.++.+-||-+++..+++
T Consensus       159 P~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~  192 (426)
T COG2873         159 PGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLC  192 (426)
T ss_pred             CCccccCHHHHHHHHHHcCCcEEEecCCCcceec
Confidence            3466889999999999999999999999987543

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=86.97  E-value=0.6  Score=32.31  Aligned_cols=35  Identities=11%  Similarity=-0.013  Sum_probs=30.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -.+|.||.+-+.+++.++++.. +++.+|-+|..+.
T Consensus       183 ~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~  217 (380)
T PLN03026        183 SPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFS  217 (380)
T ss_pred             CCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhc
Confidence            3579999999999999999864 8999999997653

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=86.73  E-value=0.76  Score=32.84  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +.|.+-|    +++|.++|+++++.+.+|=++.|+..
T Consensus       233 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr  269 (441)
T PRK05769        233 EGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGR  269 (441)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence            3467778    99999999999999999999988543

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=86.71  E-value=0.8  Score=32.24  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++|.+-+    +++|+++|+++++++-.|=+|.|+..
T Consensus       209 ~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr  245 (420)
T TIGR00700       209 EGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR  245 (420)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence            3455555    89999999999999999999988754

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=86.36  E-value=0.86  Score=31.08  Aligned_cols=35  Identities=9%  Similarity=-0.048  Sum_probs=29.1

Q ss_pred             cccceeeeeCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++..  +.++.+|-+|.-|.
T Consensus       154 PnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~  190 (351)
T PRK01688        154 PNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFC  190 (351)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcC
Confidence            578999999999988888743  57899999997664

>KOG1360|consensus

Probab=86.06  E-value=0.68  Score=34.38  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=29.1

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|++=|++||+++++|||...-+|-+.+-..+
T Consensus       314 SM~GavcpleelcDvah~yGAiTFlDEVHAVGlY  347 (570)
T KOG1360|consen  314 SMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY  347 (570)
T ss_pred             ccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc
Confidence            5789999999999999999999999987665443

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=85.59  E-value=0.92  Score=32.49  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=28.0

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.|.+-|    +++|.++|+++++.+-+|=++.|+.
T Consensus       230 ~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G  265 (445)
T PRK09221        230 SAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG  265 (445)
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence            4577778    9999999999999999999997764

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=85.47  E-value=0.96  Score=31.06  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=29.9

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++.  ++.++.+|-+|..|.
T Consensus       161 p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~  197 (364)
T PRK04781        161 PSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFS  197 (364)
T ss_pred             CCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhc
Confidence            57899999999999998875  378999999998764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=85.09  E-value=1.1  Score=31.72  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -|.+-|    +++|.++|++|++.+-+|=+|.|+..
T Consensus       220 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr  255 (433)
T PRK08117        220 GGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGR  255 (433)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence            466667    99999999999999999999998533

>PRK06855 aminotransferase; Validated

Probab=84.97  E-value=1.1  Score=31.57  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=28.0

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+.   ++|.++|+++++|+-+|-+|+.+..
T Consensus       180 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~  218 (433)
T PRK06855        180 PDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVY  218 (433)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            46788887775   5556667899999999999987653

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=84.89  E-value=0.93  Score=29.73  Aligned_cols=29  Identities=10%  Similarity=-0.017  Sum_probs=25.1

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEe
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHV   30 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~Hv   30 (63)
                      |=|++..|.++|.+..+++++++|+.+|.
T Consensus       119 TDG~n~~~~i~P~~aAa~lA~~~gV~iyt  147 (191)
T cd01455         119 SDANLERYGIQPKKLADALAREPNVNAFV  147 (191)
T ss_pred             eCCCcCCCCCChHHHHHHHHHhCCCEEEE
Confidence            34888899999999889999999999884

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=84.87  E-value=1  Score=31.51  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             cccceeeeeCHH---HHHHHHHHc-CcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEY-DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~-~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+   +|.++|+++ ++|+-+|-+|+-+.
T Consensus       221 p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~  259 (431)
T PRK15481        221 AHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS  259 (431)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence            578899998876   888889999 99999999998764

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=84.67  E-value=0.96  Score=31.17  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+=+   +++|.++|+++++|+-+|=+|+.+.
T Consensus       175 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  212 (396)
T PRK09147        175 PGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY  212 (396)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence            4677887664   6666677789999999999998764

>PRK06541 hypothetical protein; Provisional

Probab=84.63  E-value=2.2  Score=30.79  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=29.0

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.+-+    +++|.++|+++|+.+-+|=++.||..
T Consensus       232 g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR  269 (460)
T PRK06541        232 NAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGR  269 (460)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence            45577778    99999999999999999999977643

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=84.44  E-value=1  Score=30.85  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++.  .+.++.+|.+|..+.
T Consensus       168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~  204 (371)
T PRK05166        168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA  204 (371)
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc
Confidence            47889999999888888874  478999999998765

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=84.21  E-value=1.1  Score=30.42  Aligned_cols=35  Identities=17%  Similarity=0.060  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHc-CcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY-DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~-~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+++.++++.. ++++-+|-+|.-+.
T Consensus       156 P~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~  191 (354)
T PRK04635        156 PNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFC  191 (354)
T ss_pred             CCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhc
Confidence            578999999999999999863 69999999997654

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=84.14  E-value=0.72  Score=33.15  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .||.||.+   +.+.++.++++++|+++-+|-|||-.+.
T Consensus       188 PtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP  226 (417)
T COG3977         188 PTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP  226 (417)
T ss_pred             CCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC
Confidence            46677765   4577778899999999999999997664

>PRK08636 aspartate aminotransferase; Provisional

Probab=83.86  E-value=1.3  Score=30.72  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=27.7

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+=+.   ++|.++|+++++++-+|=+|+.+.
T Consensus       184 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~  221 (403)
T PRK08636        184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT  221 (403)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence            46788887665   566667789999999999998764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=83.83  E-value=1.3  Score=30.80  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=27.0

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.   ++|.++|+++++++-+|-+|+.+.
T Consensus       185 P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  222 (409)
T PRK07590        185 PNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFI  222 (409)
T ss_pred             CCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhc
Confidence            36788887664   556666788999999999998754

>PRK05367 glycine dehydrogenase; Provisional

Probab=83.48  E-value=1.5  Score=34.73  Aligned_cols=29  Identities=14%  Similarity=0.086  Sum_probs=26.6

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAW   34 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~   34 (63)
                      +.+|.+.|+++|++++++.|+.+-||+.+
T Consensus       216 ~~~G~i~d~~~i~~~ah~~Gal~~vda~~  244 (954)
T PRK05367        216 GTSGEVRDYTALIAAAHARGALVAVAADL  244 (954)
T ss_pred             CCCeeeccHHHHHHHHHHcCCEEEEEehh
Confidence            57899999999999999999999999944

>PRK05839 hypothetical protein; Provisional

Probab=83.47  E-value=1.4  Score=30.34  Aligned_cols=35  Identities=11%  Similarity=0.030  Sum_probs=26.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+=+   +++|.++|+++++++-+|-+|+.+.
T Consensus       164 P~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~  201 (374)
T PRK05839        164 PNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIY  201 (374)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence            3677888655   4555566778999999999998753

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=83.44  E-value=1.4  Score=31.26  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +.|.+-|    +++|.++|+++++.+-+|=++.||
T Consensus       212 ~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~  246 (428)
T PRK12389        212 NFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF  246 (428)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            4466777    999999999999999999999987

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=83.16  E-value=1.8  Score=30.30  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+.+++|+++|++|++++-+|=+|.|+.
T Consensus       203 ~~~l~~l~~l~~~~~~llI~DEv~tG~g  230 (406)
T PRK12381        203 KAFLQGLRELCDRHNALLIFDEVQTGVG  230 (406)
T ss_pred             HHHHHHHHHHHHHcCCEEEEcchhhCCC
Confidence            4679999999999999999999997764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=82.77  E-value=1.7  Score=31.18  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=28.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+..
T Consensus       209 P~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f  247 (447)
T PLN02607        209 PSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF  247 (447)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence            4678888766   66777788899999999999987543

>PRK09105 putative aminotransferase; Provisional

Probab=82.73  E-value=1.3  Score=30.51  Aligned_cols=34  Identities=24%  Similarity=0.117  Sum_probs=28.9

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.+++.++++.  ++.|+-+|-+|..+
T Consensus       174 P~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f  209 (370)
T PRK09105        174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHF  209 (370)
T ss_pred             CCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHh
Confidence            57999999999999998864  38999999999654

>PRK12403 putative aminotransferase; Provisional

Probab=82.32  E-value=1.7  Score=31.33  Aligned_cols=32  Identities=38%  Similarity=0.594  Sum_probs=27.8

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -|.+-|    +++|.++|++|++.+-+|=+++||..
T Consensus       235 gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR  270 (460)
T PRK12403        235 GGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGR  270 (460)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            366667    99999999999999999999988754

>KOG0630|consensus

Probab=81.32  E-value=0.96  Score=34.54  Aligned_cols=31  Identities=35%  Similarity=0.619  Sum_probs=27.9

Q ss_pred             CccccceeeeeCHHHHHHHHHHcC-cEEEecc
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYD-MWLHVDA   32 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~-~~~HvDa   32 (63)
                      ..|++-.|-.|.+-+|.++|+++. +|+|.-+
T Consensus       299 ~iGasi~GqnDmi~kildi~eahakfWLHasG  330 (838)
T KOG0630|consen  299 DIGASICGQNDMILKILDICEAHAKFWLHASG  330 (838)
T ss_pred             eccchhhcchHHHHHHHHHHHHhhheeEeecc
Confidence            478999999999999999999886 9999765

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=81.29  E-value=3.3  Score=29.51  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHcCcEEEecccccceee
Q psy14030         13 PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus        13 ~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      =+++|+++|+++|+++-.|=+|.||..
T Consensus       228 yl~~lr~lc~~~g~llI~DEV~tGfGR  254 (442)
T TIGR00709       228 WLQKIREVTRKHDIKLILDEVQAGFGR  254 (442)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCC
Confidence            388999999999999999999998765

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN02368 alanine transaminase

Probab=81.18  E-value=2  Score=30.45  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=27.6

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+.+   +|.++|+++++++-+|-+|..+.+
T Consensus       219 P~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y  257 (407)
T PLN02368        219 PGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIY  257 (407)
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            467888876655   455567889999999999987654

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=81.13  E-value=1.9  Score=30.90  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=26.9

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .|.+-|    +++|+++|+++++.+.+|=++.|+..
T Consensus       220 gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~Gr  255 (445)
T PRK08593        220 GGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGR  255 (445)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence            355556    99999999999999999999977643

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=81.08  E-value=2  Score=30.27  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             CHHHHHHHHHHcCcEEEeccccccee
Q psy14030         13 PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        13 ~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.++|+++++.+-+|-++.|+.
T Consensus       222 ~l~~l~~lc~~~g~llI~DEv~tg~g  247 (423)
T PRK05964        222 YLAELRRICDRHGVLLIFDEIATGFG  247 (423)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCCC
Confidence            39999999999999999999998764

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=81.03  E-value=2  Score=30.79  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=28.1

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +++|.+-+    +++|.++|+++++++-+|=+|.|+..
T Consensus       215 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr  252 (443)
T PRK08360        215 GDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGR  252 (443)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            45666555    88999999999999999999988644

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=80.79  E-value=1.3  Score=31.32  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         12 DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        12 d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.+++|.++|++||+.+-+|-+|.|+.
T Consensus       219 ~~l~~l~~lc~~~g~llI~DEV~tG~G  245 (425)
T PRK09264        219 EWLQRLAKLCRKHDILLIVDDIQAGCG  245 (425)
T ss_pred             HHHHHHHHHHHHcCcEEEEechhhCCc
Confidence            469999999999999999999998764

>KOG0257|consensus

Probab=80.38  E-value=1.9  Score=31.54  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+=+   +++|+++|+++++++-.|-+|--++.
T Consensus       181 PhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~  219 (420)
T KOG0257|consen  181 PHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVY  219 (420)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhh
Confidence            4677777655   77888899999999999999875544

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=80.34  E-value=2.1  Score=31.20  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|.+..--.-|+++++++|++-|.++-+|.|+-........++   .-++.+|=+|.+.|
T Consensus       172 ~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p---~P~~~AdvVTtTTH  228 (413)
T COG0112         172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP---NPLPHADVVTTTTH  228 (413)
T ss_pred             ECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC---CCCCccceEeCCcc
Confidence            3444444566899999999999999999999854444333333   23555676666665

>PRK06062 hypothetical protein; Provisional

Probab=80.11  E-value=3.8  Score=29.43  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -|.+-|    +++|.++|+++|+.+-+|=++.||..
T Consensus       227 gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR  262 (451)
T PRK06062        227 AGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGR  262 (451)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCc
Confidence            366677    99999999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	63
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		5e-20
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		5e-20
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		6e-18
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		2e-17
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		2e-08
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		3e-08
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		3e-08
2qma_A	497	Crystal Structure Of Glutamate Decarboxylase Domain		2e-07
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		3e-06
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		4e-06

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 257 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 306

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 254 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 303

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTVLGAFDP+ AIAD+C  + +WLHVDAAWGG  L+S+ HRHLL GI+R
Sbjct: 268 GTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQR 317

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 43/50 (86%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDP+ A+ADIC +Y +W+HVDAAWGGG L+SRKH+  L+G+ER
Sbjct: 250 GTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVER 299

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   +FD +  +  IC E D+WLHVDAA+ G A +  + RHLL G+E
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   +FD +  +  IC + D+WLHVDAA+ G A +  + RHLL G+E
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   +FD +  +  IC + D+WLHVDAA+ G A +  + RHLL G+E
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292

>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSED 60
           GTT  GA D +  IAD   ++D W HVD A+ GGAL+   H+  L G+ER  + S D
Sbjct: 267 GTTDHGAIDDLDFIADXAVKHDXWXHVDGAY-GGALILSSHKSRLKGVERAHSISVD 322

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT + AFD +  +  ICA   +WLH+DAA+ G A +  + R  L GIE
Sbjct: 250 GTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIE 52
           GTT   AFD +     +  ++++W+HVDAA+ G A +  ++RHL+ GIE
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	63
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	1e-28
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	4e-28
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	1e-26
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	3e-25
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	5e-25
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	7e-25
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	4e-16
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-13
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	8e-10
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	3e-09
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	2e-06
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	5e-06
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	1e-05
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	4e-05

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  104 bits (261), Expect = 1e-28
 Identities = 39/50 (78%), Positives = 43/50 (86%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTV GAFDPI  IADIC +Y++WLHVDAAWGGG L+SRKHRH L GIER
Sbjct: 254 GTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER 303

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  102 bits (257), Expect = 4e-28
 Identities = 35/50 (70%), Positives = 42/50 (84%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTTVLGAFDP+ AIAD+C  + +WLHVDAAWGG  L+S+ HRHLL GI+R
Sbjct: 268 GTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQR 317

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 98.5 bits (246), Expect = 1e-26
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT  GA D +  IAD+  ++DMW+HVD A+GG  ++S  H+  L G+ER
Sbjct: 267 GTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILS-SHKSRLKGVER 315

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 94.8 bits (236), Expect = 3e-25
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT + AFD +  +  ICA   +WLH+DAA+ G A +  + R  L GIE 
Sbjct: 250 GTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEY 299

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 94.4 bits (235), Expect = 5e-25
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT   +FD +  +  IC E D+WLHVDAA+ G A +  + RHLL G+E 
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF 293

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 93.6 bits (233), Expect = 7e-25
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT   AFD +     +  ++++W+HVDAA+ G A +  ++RHL+ GIE 
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES 292

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score = 68.9 bits (169), Expect = 4e-16
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERP 54
           GTT LG  D I  ++ I  E ++++HVDAA+GG  +     ++   G+   
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYK 230

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
                   D I  IA IC  YD+   ++ A+    + +  +   L    +
Sbjct: 240 TFFPPRNSDDIVEIAKICENYDIPHIINGAYA---IQNNYYLEKLKKAFK 286

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 51.4 bits (123), Expect = 8e-10
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKH-----RHLLTGIERPQNRS 58
                G  DPIP IA + AE+ +  HVDA  GG  L   +            +E   + S
Sbjct: 248 PGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVS 307

Query: 59  EDTP 62
            DT 
Sbjct: 308 ADTH 311

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score = 49.5 bits (118), Expect = 3e-09
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG 36
                G  D I  +  I  +Y + LHVD+  G 
Sbjct: 215 PNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGS 247

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score = 41.6 bits (97), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 4   GTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL 39
           G+T+ G F+ +  + D+  E       D  +HVDAA GG   
Sbjct: 211 GSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 40.7 bits (95), Expect = 5e-06
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 4   GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGG 36
           G T  G ++    + D   +       D+ +H+DAA GG
Sbjct: 196 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 234

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 12  DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           D +  +A ICA YD+   V+ A+G   L S K  HL+    R
Sbjct: 215 DRLEELAVICANYDIPHVVNNAYG---LQSSKCMHLIQQGAR 253

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 38.2 bits (88), Expect = 4e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 12  DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           D +  +A ICA YD+   V+ A+G   + S K  HL+    R
Sbjct: 233 DRLEELAVICANYDIPHIVNNAYG---VQSSKCMHLIQQGAR 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	63
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.67
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.64
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.63
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.61
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.61
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.56
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.56
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.33
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.23
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.18
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.08
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.75
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.68
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.52
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.51
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.06
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.0
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	98.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	97.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	97.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	97.95
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.92
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.9
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.87
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	97.87
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	97.87
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	97.86
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	97.86
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	97.85
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.85
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	97.85
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	97.85
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	97.84
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	97.84
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	97.83
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	97.82
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	97.8
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	97.74
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	97.73
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	97.72
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	97.7
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.7
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.69
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.68
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	97.67
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	97.67
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	97.67
1svv_A	359	Threonine aldolase; structural genomics, structura	97.67
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	97.67
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	97.65
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	97.64
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	97.64
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	97.64
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	97.64
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	97.63
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	97.63
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	97.63
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	97.63
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	97.63
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.61
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	97.61
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	97.58
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.58
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	97.56
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.55
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	97.55
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	97.53
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	97.52
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	97.52
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	97.5
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	97.49
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	97.47
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	97.47
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.46
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.46
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.46
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.45
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	97.45
3nra_A	407	Aspartate aminotransferase; structural genomics, j	97.44
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	97.44
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.43
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	97.43
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	97.42
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.41
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	97.41
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.4
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	97.39
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	97.39
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	97.38
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	97.34
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	97.33
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	97.32
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	97.32
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	97.31
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.31
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	97.31
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	97.3
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.3
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.3
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.29
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.28
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.28
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	97.26
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.24
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	97.23
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.2
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	97.2
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	97.19
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	97.19
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	97.18
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	97.18
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	97.16
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	97.13
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.13
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	97.13
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.11
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	97.11
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	97.11
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	97.1
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	97.1
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	97.09
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.09
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	97.07
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	97.07
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	97.07
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	97.03
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.01
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	97.01
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	96.99
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	96.98
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	96.98
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	96.98
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	96.97
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	96.95
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	96.93
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	96.93
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	96.93
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	96.89
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	96.89
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	96.89
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	96.89
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	96.88
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	96.88
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	96.88
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	96.86
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	96.84
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	96.84
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	96.81
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	96.81
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	96.81
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	96.81
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	96.8
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	96.79
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	96.78
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	96.78
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	96.77
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	96.76
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	96.76
1vp4_A	425	Aminotransferase, putative; structural genomics, j	96.76
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	96.75
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	96.75
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	96.71
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	96.7
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	96.67
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	96.66
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	96.66
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.66
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	96.65
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	96.64
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	96.63
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	96.63
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	96.63
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	96.62
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	96.57
3ele_A	398	Amino transferase; RER070207001803, structural gen	96.56
1z7d_A	433	Ornithine aminotransferase; structural genomics co	96.56
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	96.56
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	96.56
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	96.55
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	96.54
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	96.51
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	96.51
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	96.49
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	96.45
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	96.44
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	96.44
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	96.42
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	96.39
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	96.38
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	96.36
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	96.34
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	96.31
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	96.29
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.29
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	96.29
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	96.26
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	96.25
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	96.13
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	96.1
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	96.01
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	95.95
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	95.93
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	94.91
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	95.9
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	95.75
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	95.7
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	95.61
3rq1_A	418	Aminotransferase class I and II; structural genomi	95.58
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	95.43
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	95.36
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	95.35
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	95.35
3hmu_A	472	Aminotransferase, class III; structural genomics,	95.3
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	95.11
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	95.05
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	95.04
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	95.03
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	94.6
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	94.45
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	94.22
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	93.67
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	93.58
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	92.86
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	91.03
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	90.08
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	90.62
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	87.52
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	87.09
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	86.03
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	85.55
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	85.07
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	84.47

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.8e-17  Score=114.85  Aligned_cols=62  Identities=35%  Similarity=0.606  Sum_probs=58.4

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ++.|+|++|++||+++|+++|+++++|+|||+||+++.+++++++....+++.+||+++|+|
T Consensus       247 ~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~h  308 (481)
T 4e1o_A          247 ATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPS  308 (481)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHH
T ss_pred             EecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChH
Confidence            36799999999999999999999999999999999998889998888889999999999987

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.64  E-value=5.4e-17  Score=112.66  Aligned_cols=61  Identities=33%  Similarity=0.543  Sum_probs=57.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|++|.+||+++|+++|+++|+|+|+|+||++..+++++++..+.+++.+||+++|+|
T Consensus       241 ~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~h  301 (475)
T 3k40_A          241 TLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPH  301 (475)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHH
T ss_pred             EecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECch
Confidence            6799999999999999999999999999999999988888888888889999999999987

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.63  E-value=1.3e-16  Score=111.65  Aligned_cols=61  Identities=64%  Similarity=1.134  Sum_probs=58.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|.+|.+||+++|+++|+++++|+|+|+||+++.+++++++..+.|++++||+++|+|
T Consensus       255 ~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~h  315 (511)
T 3vp6_A          255 TAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPH  315 (511)
T ss_dssp             EBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTT
T ss_pred             ecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcc
Confidence            6799999999999999999999999999999999999999999999999999999999998

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.61  E-value=1.8e-16  Score=108.99  Aligned_cols=61  Identities=39%  Similarity=0.676  Sum_probs=57.0

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|++|++||+++|+++|+++++|+|+|+||+++.+.++++++.+.+++.+||+++|+|
T Consensus       242 ~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~h  302 (486)
T 1js3_A          242 TLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPH  302 (486)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHH
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchh
Confidence            6799999999999999999999999999999999988888888887788899999999987

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.61  E-value=3.8e-16  Score=108.11  Aligned_cols=61  Identities=64%  Similarity=1.134  Sum_probs=57.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|.+|.+||+++|+++|+++++|+|+|++|+++.+.+++++..+.+++.+||+++|+|
T Consensus       252 ~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~h  312 (504)
T 2okj_A          252 TAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPH  312 (504)
T ss_dssp             CBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTT
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECch
Confidence            6799999999999999999999999999999999999888888888888889999999998

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.56  E-value=1.5e-15  Score=105.67  Aligned_cols=61  Identities=57%  Similarity=1.044  Sum_probs=57.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|.+|.++|+++|+++|+++++|+|+|++|+++.+.++++++.+.+++.+||+++|+|
T Consensus       266 ~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~h  326 (515)
T 2jis_A          266 TSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPH  326 (515)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTT
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcc
Confidence            6789999999999999999999999999999999999988888888888999999999998

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.56  E-value=1.6e-15  Score=104.77  Aligned_cols=60  Identities=43%  Similarity=0.712  Sum_probs=55.2

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|++|.+||+++|+++|+++++|+|+|+||+++...++ +++.+.+++.+||+++|+|
T Consensus       265 ~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~h  324 (497)
T 2qma_A          265 TAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFH  324 (497)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETT
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcch
Confidence            57999999999999999999999999999999999887666 7767788889999999998

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.33  E-value=6e-13  Score=90.71  Aligned_cols=61  Identities=23%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             CCccccceeeeeCHHHHHHHHHHc------CcEEEecccccceee--ecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL--VSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~------~~~~HvDaa~gg~~~--~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ++.|+|.||.++|+++|+++|+++      ++|+|||+||+++..  +.++.+..+ .++.+||+++|+|
T Consensus       193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~h  261 (452)
T 2dgk_A          193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-RLPRVKSISASGH  261 (452)
T ss_dssp             CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETT
T ss_pred             EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-CCCCCcEEEECcc
Confidence            367999999999999999999996      999999999999865  234433333 3778999999998

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.23  E-value=3.3e-12  Score=89.14  Aligned_cols=60  Identities=23%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CccccceeeeeCHHHHHHHHHHc------CcEEEecccccceee--ecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEY------DMWLHVDAAWGGGAL--VSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~------~~~~HvDaa~gg~~~--~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|+|.+|.++|+++|.++|+++      ++|+|||+||+++..  +.++.++.+ .++.+||+++++|
T Consensus       209 ~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~-~~~~~D~v~~s~h  276 (502)
T 3hbx_A          209 ILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF-RLPLVKSINVSGH  276 (502)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETT
T ss_pred             ecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccccc-CCCCceEEEECcc
Confidence            57899999999999999999999      999999999998875  355555545 4789999999988

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.18  E-value=2.2e-12  Score=91.12  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCC--CCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGI--ERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i--~~adSi~~d~h   62 (63)
                      |++++.+|++||+++|+++|++||+|+|||.|||+.+.+.+++..  .++  ++|||++.|+|
T Consensus       205 t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~--~a~~~~~AD~~v~S~H  265 (450)
T 3bc8_A          205 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ--QGARVGRIDAFVQSLD  265 (450)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH--HHHHHSCCCEEEEEHH
T ss_pred             ECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHH--HHhcccCCCEEEECCc
Confidence            566777789999999999999999999999999998776554332  233  78999999988

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.08  E-value=3.2e-11  Score=82.79  Aligned_cols=59  Identities=19%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee-ecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL-VSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~-~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.++|++|.++|+++|.++|+++++|+|+|+||+++.+ ..+...+.+.+  .+|+++.++|
T Consensus       238 ~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~h  297 (456)
T 2z67_A          238 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSD  297 (456)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHH
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCC
Confidence            46789999999999999999999999999999998776 44444444444  6899999876

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.75  E-value=6.4e-09  Score=71.88  Aligned_cols=61  Identities=33%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeec-ccc----hhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVS-RKH----RHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~-~~~----~~~~~~i~~adSi~~d~h   62 (63)
                      +.+++.+|.++|+++|.++|+++++|+|+|.+|+++.... ...    .+.......+|+++.++|
T Consensus       246 ~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~  311 (514)
T 3mad_A          246 SAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTH  311 (514)
T ss_dssp             ETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTT
T ss_pred             eCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECch
Confidence            4578899999999999999999999999999999887631 111    011123456799999887

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=98.68  E-value=2.4e-09  Score=73.36  Aligned_cols=61  Identities=25%  Similarity=0.199  Sum_probs=46.6

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeee-ccc-----chhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV-SRK-----HRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~-~~~-----~~~~~~~i~~adSi~~d~h   62 (63)
                      +.++|.+|.++|+++|+++|+++|+|+|+|.+|+++... ..+     ..+.......+|+++.++|
T Consensus       213 ~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~  279 (497)
T 3mc6_A          213 SAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTH  279 (497)
T ss_dssp             ETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETT
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECch
Confidence            457899999999999999999999999999999987653 211     1011123456799999987

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.52  E-value=8e-08  Score=62.46  Aligned_cols=37  Identities=43%  Similarity=0.775  Sum_probs=34.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++|.+|.++|+++|.++|+++++++++|.+|+++..
T Consensus       179 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~  215 (397)
T 3f9t_A          179 AGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVI  215 (397)
T ss_dssp             BSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTG
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhh
Confidence            4689999999999999999999999999999998765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.51  E-value=1.6e-08  Score=72.69  Aligned_cols=55  Identities=20%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             eeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          8 LGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .++++||++|+++|++||+|+|||.|||+.+.++.++........+||.+..|+|
T Consensus       229 p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~H  283 (501)
T 3hl2_A          229 PRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLD  283 (501)
T ss_dssp             TBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEeccc
Confidence            4577999999999999999999999999988776654432223446999999887

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.06  E-value=3.9e-06  Score=61.77  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=41.4

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCC--Cce------eEecCC
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER--PQN------RSEDTP   62 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~--adS------i~~d~h   62 (63)
                      |.+|.+.|+++|+++|+++++++|+|.||++.+.+.+.+++... +..  +|.      ++.++|
T Consensus       322 n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~-~~g~~aD~~~~~~iv~~S~h  385 (755)
T 2vyc_A          322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA-MRGEPGDHNGPTVFATHSTH  385 (755)
T ss_dssp             CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSS-SCSCCCCCSSBEEEEEEETT
T ss_pred             CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcch-hcCCcCCccCCCeEEEECcc
Confidence            46899999999999999999999999999876555554322111 122  566      777776

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.00  E-value=1.6e-06  Score=55.97  Aligned_cols=56  Identities=27%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             ceee---eeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCC-CCCceeEecCC
Q psy14030          7 VLGA---FDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGI-ERPQNRSEDTP   62 (63)
Q Consensus         7 ~tG~---id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i-~~adSi~~d~h   62 (63)
                      ++|.   .+++++|.++|+++++++|+|.+|+.+............++ ..+|.+.+++|
T Consensus       152 ~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~s  211 (356)
T 1v72_A          152 EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGAT  211 (356)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCG
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecc
Confidence            4888   88899999999999999999999986533211111111122 25677777654

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=98.00  E-value=2.4e-06  Score=58.67  Aligned_cols=56  Identities=7%  Similarity=-0.004  Sum_probs=39.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .|.+|.+.|+++|.++|+++++++++|.+|++.+.+.+. ....... .+|.++.++|
T Consensus       155 ~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~-g~Di~~~S~~  210 (446)
T 2x3l_A          155 PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY-QADYVVQSFH  210 (446)
T ss_dssp             SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG-TCSEEEECHH
T ss_pred             CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc-CCCEEEECCc
Confidence            455999999999999999999999999999983334332 1111111 2567766654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=97.97  E-value=4.1e-06  Score=55.07  Aligned_cols=35  Identities=29%  Similarity=0.546  Sum_probs=31.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|.+|.+.|+++|.++|+++++++++|.+++..
T Consensus       146 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~  180 (411)
T 3nnk_A          146 QGDTSTTMLQPLAELGEICRRYDALFYTDATASLG  180 (411)
T ss_dssp             SEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBT
T ss_pred             CCCCCcceeccHHHHHHHHHHcCCEEEEECCcccC
Confidence            35789999999999999999999999999998753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=97.95  E-value=7.5e-06  Score=53.89  Aligned_cols=36  Identities=31%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+.+..
T Consensus       132 ~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~  167 (388)
T 1b9h_A          132 PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGAR  167 (388)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred             EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCc
Confidence            578899999999999999999999999999985443

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.95  E-value=1e-05  Score=52.63  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHc--CcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~   37 (63)
                      ..+|.||.+.|+++|.++|+++  ++++++|.+|+..
T Consensus       145 ~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~  181 (385)
T 2bkw_A          145 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG  181 (385)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred             ccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccC
Confidence            3578999999999999999999  9999999999743

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.92  E-value=1.1e-05  Score=53.15  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      -++.+|.+.|+++|.++|+++++++++|.+|+.+...
T Consensus       150 ~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~  186 (391)
T 3dr4_A          150 PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATY  186 (391)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred             EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceE
Confidence            3678999999999999999999999999999865443

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.90  E-value=1.4e-05  Score=51.93  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=32.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       154 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~  189 (386)
T 2dr1_A          154 YNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG  189 (386)
T ss_dssp             SEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT
T ss_pred             eecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC
Confidence            357889999999999999999999999999998654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.87  E-value=1.8e-05  Score=50.84  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHc--CcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++  ++++++|.+|+.
T Consensus       129 ~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~  164 (352)
T 1iug_A          129 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSL  164 (352)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTB
T ss_pred             EecCCcceecCHHHHHHHHHhhCCCCEEEEECCccc
Confidence            4678999999999999999999  999999999974

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=97.87  E-value=1e-05  Score=55.62  Aligned_cols=51  Identities=22%  Similarity=0.106  Sum_probs=37.8

Q ss_pred             ceeee-eCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          7 VLGAF-DPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         7 ~tG~i-d~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .+|.+ +++++|+++|+++++++|+|.+|+.+..  ...+...   ..+|.++.|+|
T Consensus       214 ~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~--g~~~~~~---~g~di~~~s~~  265 (474)
T 1wyu_B          214 TLGLFERRILEISRLCKEAGVQLYYDGANLNAIM--GWARPGD---MGFDVVHLNLH  265 (474)
T ss_dssp             TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTCCHHH---HTCSEEECCTT
T ss_pred             CCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc--cCCCccc---CCCcEEEEeCc
Confidence            58998 8999999999999999999999975543  1111111   13688888776

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=97.87  E-value=1.5e-05  Score=51.93  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|+++|+++++++++|.+++++..
T Consensus       153 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~  188 (376)
T 3f0h_A          153 DETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD  188 (376)
T ss_dssp             EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCc
Confidence            478999999999999999999999999999886543

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=97.86  E-value=2.2e-05  Score=51.32  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+.
T Consensus       142 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~  175 (392)
T 2z9v_A          142 HHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSF  175 (392)
T ss_dssp             SEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTB
T ss_pred             ccCCCCceeccHHHHHHHHHHcCCeEEEEccccc
Confidence            4578899999999999999999999999999974

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=97.86  E-value=2.1e-05  Score=52.02  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=32.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|++..
T Consensus       171 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~  206 (423)
T 3lvm_A          171 HVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK  206 (423)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC
Confidence            457899999999999999999999999999998643

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=97.85  E-value=2.2e-05  Score=51.18  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+.+..+
T Consensus       131 ~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~  167 (374)
T 3uwc_A          131 PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRI  167 (374)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred             EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCcee
Confidence            4678999999999999999999999999999865443

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.85  E-value=1.7e-05  Score=53.78  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+.|+++|.++|+++|+++++|++++....
T Consensus       223 ~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~  258 (465)
T 3e9k_A          223 VHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV  258 (465)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred             cccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc
Confidence            468999999999999999999999999999876443

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=97.85  E-value=1.3e-05  Score=52.79  Aligned_cols=35  Identities=34%  Similarity=0.485  Sum_probs=31.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+..
T Consensus       144 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~  178 (416)
T 3isl_A          144 HGETSTGRIHPLKAIGEACRTEDALFIVDAVATIG  178 (416)
T ss_dssp             SEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             ccCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence            35788999999999999999999999999998743

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=97.85  E-value=2.1e-05  Score=51.63  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+..
T Consensus       167 ~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~  201 (400)
T 3vax_A          167 HVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYG  201 (400)
T ss_dssp             SBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTT
T ss_pred             CCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcC
Confidence            45788999999999999999999999999999743

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=97.84  E-value=5.4e-06  Score=53.41  Aligned_cols=36  Identities=22%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHc-CcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY-DMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~-~~~~HvDaa~gg~~   38 (63)
                      ..+|.||.+.|+++|.++|+++ ++++++|++++.+.
T Consensus       138 ~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~  174 (362)
T 3ffr_A          138 HNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY  174 (362)
T ss_dssp             SEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS
T ss_pred             cCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC
Confidence            3578999999999999999999 99999999987543

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=97.84  E-value=1.9e-05  Score=53.09  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|++|.+.|+++|+++|+++++++++|.+|+.++
T Consensus       160 ~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~  194 (392)
T 3qhx_A          160 PTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA  194 (392)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             CCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc
Confidence            57899999999999999999999999999998653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=97.83  E-value=1.4e-05  Score=51.87  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+|.+|.+.|+++|.++|+++++++++|.+|+...
T Consensus       135 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~  170 (384)
T 3zrp_A          135 HVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGA  170 (384)
T ss_dssp             SEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTT
T ss_pred             CCCCCCceECcHHHHHHHHHhcCCEEEEECcccccC
Confidence            357889999999999999999999999999987543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=97.82  E-value=1.1e-05  Score=54.26  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..++++|.+.|+++|+++|+++++++++|.+|+.+
T Consensus       148 ~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~  182 (412)
T 2cb1_A          148 TVANPALLVPDLEALATLAEEAGVALVVDNTFGAA  182 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTT
T ss_pred             CCCCCCcccccHHHHHHHHHHcCCEEEEECCCccc
Confidence            35788999999999999999999999999999876

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=97.80  E-value=1.2e-05  Score=51.41  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+.
T Consensus       132 ~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~  165 (353)
T 2yrr_A          132 HGETSTGVLNPAEAIGALAKEAGALFFLDAVTTL  165 (353)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ccCCCcceecCHHHHHHHHHHcCCeEEEEcCccc
Confidence            4578899999999999999999999999999963

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=97.74  E-value=2.3e-05  Score=55.31  Aligned_cols=57  Identities=16%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ++.+..|.+.|+++|+++|+++|+++|+|.|++............+   +.+|.++.++|
T Consensus       209 ~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~h  265 (490)
T 2a7v_A          209 AGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTH  265 (490)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESS
T ss_pred             EcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECCc
Confidence            3556678888999999999999999999999864332222111112   35788888776

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=97.73  E-value=2e-05  Score=52.00  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=31.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++|+++++|.+|+.
T Consensus       173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~  206 (416)
T 1qz9_A          173 HVNYKTGYMHDMQALTALSHECGALAIWDLAHSA  206 (416)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ccccCcccccCHHHHHHHHHHcCCEEEEEccccc
Confidence            4578899999999999999999999999999974

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=97.72  E-value=1.7e-05  Score=52.20  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=31.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+..
T Consensus       173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g  207 (406)
T 3cai_A          173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAP  207 (406)
T ss_dssp             SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccC
Confidence            45789999999999999999999999999999843

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=97.70  E-value=4.4e-05  Score=49.89  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .++.||.+.|+++|.++|+++++++++|.+|+
T Consensus       184 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~  215 (399)
T 3tqx_A          184 VFSMDGIIADLKSICDLADKYNALVMVDDSHA  215 (399)
T ss_dssp             EETTTTEECCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCEEEEECCcc
Confidence            46899999999999999999999999999996

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.70  E-value=2.1e-05  Score=51.56  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+.+..+
T Consensus       130 ~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~  166 (373)
T 3frk_A          130 AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLY  166 (373)
T ss_dssp             EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE
T ss_pred             EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEE
Confidence            4678999999999999999999999999999865443

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.69  E-value=3.7e-05  Score=49.90  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             ceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          7 VLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         7 ~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+.|+++|.++|+++++++++|.+|+.+..
T Consensus       130 ~tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~  162 (375)
T 2fnu_A          130 YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSE  162 (375)
T ss_dssp             GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE
T ss_pred             CcCCccCHHHHHHHHHHcCCEEEEECccccCCe
Confidence            389999999999999999999999999986544

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.68  E-value=5.9e-05  Score=49.64  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccc-cee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWG-GGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g-g~~   38 (63)
                      .+|.+|.+.|+++|.++|+++++++++|.+|+ ++.
T Consensus       186 ~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~  221 (401)
T 1fc4_A          186 VFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV  221 (401)
T ss_dssp             EETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred             CcCCCCCCCCHHHHHHHHHHcCCEEEEECccccccc
Confidence            46789999999999999999999999999996 654

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=97.67  E-value=4.9e-05  Score=49.24  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=30.7

Q ss_pred             ccccceeeeeCHHHHHHHHHHcC--cEEEeccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYD--MWLHVDAAWG   35 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~--~~~HvDaa~g   35 (63)
                      ..++.||.+.|+++|.++|++++  +++++|.+|+
T Consensus       147 ~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~  181 (384)
T 1eg5_A          147 AANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT  181 (384)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTT
T ss_pred             CCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhh
Confidence            35788999999999999999999  9999999987

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=97.67  E-value=3.1e-05  Score=50.35  Aligned_cols=34  Identities=24%  Similarity=0.506  Sum_probs=31.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+.
T Consensus       156 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~  189 (393)
T 3kgw_A          156 HGESSTGVVQPLDGFGELCHRYQCLLLVDSVASL  189 (393)
T ss_dssp             SEETTTTEECCCTTHHHHHHHTTCEEEEECTTTT
T ss_pred             ccCCcchhhccHHHHHHHHHHcCCEEEEECCccc
Confidence            3578899999999999999999999999999873

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=97.67  E-value=3.6e-05  Score=50.55  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=32.0

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|.++|+++++++++|++|+.+..
T Consensus       129 ~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~  164 (367)
T 3nyt_A          129 PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS  164 (367)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE
T ss_pred             eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe
Confidence            467899999999999999999999999999985443

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.67  E-value=6.6e-06  Score=52.92  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=28.6

Q ss_pred             cceeeeeC---HHHHHHHHHHcCcEEEecccccce
Q psy14030          6 TVLGAFDP---IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         6 t~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++||.+.|   +++|.++|+++++++++|.+|+++
T Consensus       155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~  189 (359)
T 1svv_A          155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS  189 (359)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred             CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhh
Confidence            46899988   899999999999999999999655

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.67  E-value=2.4e-05  Score=51.79  Aligned_cols=36  Identities=22%  Similarity=0.128  Sum_probs=33.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++++|.+.|+++|.++|+++++++++|.+|+++..
T Consensus       146 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~  181 (386)
T 1cs1_A          146 PSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL  181 (386)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            578899999999999999999999999999988765

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=97.65  E-value=5.3e-05  Score=50.52  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.+|.+.++++|.++|+++++++++|.+|+.+..
T Consensus       137 ~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~  171 (418)
T 2c81_A          137 VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSV  171 (418)
T ss_dssp             BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred             eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCc
Confidence            56789999999999999999999999999988754

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=97.64  E-value=2.9e-05  Score=49.90  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.||.+.|+++|.++|+++++++++|.+|+..
T Consensus       140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~  173 (366)
T 1m32_A          140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFG  173 (366)
T ss_dssp             EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence            4577899999999999999999999999999854

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.64  E-value=5.7e-05  Score=49.70  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=31.7

Q ss_pred             cccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -++++|.+.|    +++|.++|+++++++++|.+|.++.
T Consensus       191 ~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~  229 (392)
T 3ruy_A          191 IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLG  229 (392)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTT
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCC
Confidence            4788999998    9999999999999999999997653

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=97.64  E-value=2.3e-05  Score=52.41  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=32.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++++|.+.|+++|+++|+++++++++|.+|+.+..
T Consensus       159 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~  194 (398)
T 1gc0_A          159 PANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL  194 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH
T ss_pred             CCCCCcccccHHHHHHHHHHcCCEEEEECCCccccc
Confidence            578899999999999999999999999999986654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=97.64  E-value=3.6e-05  Score=49.63  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=31.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+|.||.+.|+++|.++|+++++ +++|.+|+...
T Consensus       146 ~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~  180 (382)
T 4hvk_A          146 HANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ  180 (382)
T ss_dssp             SBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT
T ss_pred             CCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC
Confidence            467899999999999999999999 99999987543

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=97.63  E-value=2.7e-05  Score=51.90  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=32.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|+++|+++++++++|.+|+.+..
T Consensus       158 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~  193 (398)
T 2rfv_A          158 PANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC  193 (398)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            578899999999999999999999999999986543

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=97.63  E-value=4.7e-05  Score=56.16  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeeccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRK   43 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~   43 (63)
                      |.+|.+.|+++|+++|+++++++|+|.||+..+.+.+.
T Consensus       291 n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~  328 (730)
T 1c4k_A          291 TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  328 (730)
T ss_dssp             CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcc
Confidence            46899999999999999999999999999865545443

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=97.63  E-value=3.6e-05  Score=50.53  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+|.+|.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       177 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~  212 (420)
T 1t3i_A          177 HISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH  212 (420)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC
Confidence            356789999999999999999999999999998643

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=97.63  E-value=2.4e-05  Score=50.72  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=33.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..+|.+|.+.|+++|.++|+++++++++|.+|+.+..
T Consensus       155 ~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~  191 (371)
T 2e7j_A          155 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM  191 (371)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB
T ss_pred             CCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCC
Confidence            3568899999999999999999999999999987543

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=97.63  E-value=7.6e-05  Score=50.18  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++++|.+.|+++|.++|+++++++++|.+|+++..
T Consensus       204 ~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~  238 (427)
T 2w8t_A          204 YSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFF  238 (427)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred             CCCCCCccCHHHHHHHHHHcCCEEEEECCcccccc
Confidence            57899999999999999999999999999997654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.61  E-value=4e-05  Score=49.99  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..++.||.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       172 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~  207 (406)
T 1kmj_A          172 HVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH  207 (406)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC
Confidence            356889999999999999999999999999998643

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=97.61  E-value=3.3e-05  Score=51.41  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             CccccceeeeeCHHHHHHHHHHcC----------cEEEecccccce
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYD----------MWLHVDAAWGGG   37 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~----------~~~HvDaa~gg~   37 (63)
                      +..+|.||.+.|+++|.++|++++          +++++|.+|+.+
T Consensus       182 ~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~  227 (432)
T 3a9z_A          182 MLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALG  227 (432)
T ss_dssp             CSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTT
T ss_pred             ECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhC
Confidence            346789999999999999999999          999999999764

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.58  E-value=3.3e-05  Score=51.99  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             cccceeeeeCHHHHHHHHHHc----CcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY----DMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~----~~~~HvDaa~gg~~~   39 (63)
                      .+|++|.+.|+++|.++|+++    ++++++|.+|+.+..
T Consensus       147 ~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~  186 (393)
T 1n8p_A          147 PTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred             CCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence            578999999999999999999    999999999987654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.58  E-value=7.5e-05  Score=49.51  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+|.+|.+.|   +++|.++|+++++++++|++++
T Consensus       144 ~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~  178 (379)
T 3ke3_A          144 VETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS  178 (379)
T ss_dssp             EETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            4678999999   9999999999999999999987

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=97.56  E-value=4.2e-05  Score=51.19  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+.|+++|.++|+++++++++|.+|+.+..
T Consensus       153 ~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~  188 (389)
T 3acz_A          153 PANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCF  188 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            578899999999999999999999999999987653

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.55  E-value=8.3e-05  Score=49.47  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-   ++++|.++|+++++++++|.+|+++..
T Consensus       183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~  221 (409)
T 2gb3_A          183 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF  221 (409)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccccccc
Confidence            466789874   589999999999999999999998653

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=97.55  E-value=3.5e-05  Score=50.28  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.4

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++++|.+|+++..
T Consensus       169 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  207 (391)
T 3dzz_A          169 PHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL  207 (391)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence            47889999   8899999999999999999999987654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=97.53  E-value=5.4e-05  Score=51.84  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~   37 (63)
                      .+|++|.+.|+++|+++|++  +++++++|.+|+..
T Consensus       176 ~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~  211 (415)
T 2fq6_A          176 PGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAG  211 (415)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred             CCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccc
Confidence            46899999999999999999  99999999999854

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=97.52  E-value=5.3e-05  Score=49.36  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             cccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.||.+.+    +++|.++|+++++++++|.+|+++
T Consensus       181 ~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~  218 (375)
T 2eh6_A          181 IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGI  218 (375)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence            4678899988    999999999999999999999974

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=97.52  E-value=5.8e-05  Score=49.71  Aligned_cols=33  Identities=21%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +++||.+.|    +++|.++|+++++++++|.+|+++
T Consensus       195 ~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~  231 (395)
T 1vef_A          195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGM  231 (395)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence            567998887    999999999999999999999974

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=97.50  E-value=6.4e-05  Score=49.57  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ..++.||.+.|+++|.++|+++++++++|.+|+
T Consensus       186 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~  218 (401)
T 2bwn_A          186 SVYSMDGDFGPIKEICDIAEEFGALTYIDEVHA  218 (401)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             cCcCCCCCcCCHHHHHHHHHHcCCEEEEecccc
Confidence            356889999999999999999999999999998

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=97.49  E-value=3.2e-05  Score=52.07  Aligned_cols=32  Identities=13%  Similarity=0.173  Sum_probs=26.5

Q ss_pred             ccce-eee---eCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVL-GAF---DPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~t-G~i---d~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ++++ |.+   +++++|+++|+++|+++|+|.+++.
T Consensus       193 ~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~  228 (467)
T 1ax4_A          193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC  228 (467)
T ss_dssp             BTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhh
Confidence            5667 654   6788999999999999999998654

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=97.47  E-value=6.3e-05  Score=52.21  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|++|.+.|+++|+++|+++++++++|.+|+.+.
T Consensus       209 p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~  243 (445)
T 1qgn_A          209 PTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPL  243 (445)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc
Confidence            57899999999999999999999999999998654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.47  E-value=7.7e-05  Score=50.53  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccc-cce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAW-GGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~-gg~   37 (63)
                      .+|.+|.+.|+++|+++|+++|+++++|.+| +..
T Consensus       153 ~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g  187 (421)
T 2ctz_A          153 IGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG  187 (421)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc
Confidence            4678999999999999999999999999999 643

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.46  E-value=0.00013  Score=48.45  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc-cee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG-GGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g-g~~   38 (63)
                      ++.+|..+++++|.++|+++++++++|.+|+ |+.
T Consensus       129 ~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~  163 (394)
T 1o69_A          129 THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSF  163 (394)
T ss_dssp             ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred             ECCCCChhhHHHHHHHHHHcCCEEEEECcCcccce
Confidence            3578999999999999999999999999998 543

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.46  E-value=4.2e-05  Score=51.52  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             ccce-ee---eeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          5 TTVL-GA---FDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         5 tt~t-G~---id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ++++ |.   .+++++|+++|+++|+++|+|++++.
T Consensus       193 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~  228 (467)
T 2oqx_A          193 SNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA  228 (467)
T ss_dssp             BCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             ccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence            4555 55   46789999999999999999988765

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.46  E-value=7e-05  Score=49.73  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+++||.+.|+++|.++|+++++++++|.+|+++
T Consensus       195 ~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g  228 (409)
T 3kki_A          195 IYSTLGTIAPLAELVNISKEFGCALLVDESHSLG  228 (409)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence            3578999999999999999999999999999764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.45  E-value=8.2e-05  Score=48.71  Aligned_cols=35  Identities=29%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       177 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~  211 (384)
T 1bs0_A          177 VFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV  211 (384)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCCCCccCHHHHHHHHHHcCcEEEEECCcccce
Confidence            46789999999999999999999999999997543

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=97.45  E-value=4.3e-05  Score=49.97  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+++.
T Consensus       152 ~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~  185 (393)
T 2huf_A          152 QGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASL  185 (393)
T ss_dssp             SEETTTTEECCCTTHHHHHHHTTCEEEEECTTTB
T ss_pred             ccCCCccccCCHHHHHHHHHHcCCEEEEEccccc
Confidence            3578899999999999999999999999999864

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=97.44  E-value=8.7e-05  Score=48.72  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=31.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-|   +++|+++|+++++++++|.+|+++..
T Consensus       188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~  226 (407)
T 3nra_A          188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY  226 (407)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            4788999988   99999999999999999999987553

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=97.44  E-value=4.1e-05  Score=50.20  Aligned_cols=33  Identities=27%  Similarity=0.525  Sum_probs=30.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+
T Consensus       167 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~  199 (393)
T 1vjo_A          167 HAETSTGARQPLEGVGELCREFGTLLLVDTVTS  199 (393)
T ss_dssp             SEETTTTEECCCTTHHHHHHHHTCEEEEECTTT
T ss_pred             ccCCCcceeccHHHHHHHHHHcCCEEEEECCcc
Confidence            356889999999999999999999999999998

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.43  E-value=0.00011  Score=48.08  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.+|.+.++++|.++|+++++++++|.+|+.+.
T Consensus       134 ~~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~  167 (393)
T 1mdo_A          134 VHYAGAPADLDAIYALGERYGIPVIEDAAHATGT  167 (393)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC
T ss_pred             eCCCCCcCCHHHHHHHHHHcCCeEEEECccccCC
Confidence            4578999999999999999999999999998543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=97.43  E-value=6.6e-05  Score=48.36  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=32.9

Q ss_pred             ccccceeeeeCHHHHHHHHHH-cCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAE-YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~-~~~~~HvDaa~gg~~~   39 (63)
                      ..+|++|.+.|+++|.++|++ +++++++|.+|+.+..
T Consensus        91 ~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~  128 (331)
T 1pff_A           91 TPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL  128 (331)
T ss_dssp             SSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH
T ss_pred             CCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCccccc
Confidence            357889999999999999999 9999999999986543

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=97.42  E-value=6.5e-05  Score=48.96  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+   +++++|.++|+++++++++|.+|+++.
T Consensus       173 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  210 (391)
T 4dq6_A          173 PHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDII  210 (391)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccc
Confidence            46789999   889999999999999999999998754

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.41  E-value=9.4e-05  Score=48.74  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -++.||.+.|+++|.++|+++++++++|.+|+.+.
T Consensus       182 ~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~  216 (398)
T 3a2b_A          182 IFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGV  216 (398)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccc
Confidence            35779999999999999999999999999997553

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=97.41  E-value=5.2e-05  Score=49.64  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ..+|.||.+.|+++|.++|+++++++++|.+|+
T Consensus       151 ~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~  183 (396)
T 2ch1_A          151 HGDSSSGLLQPLEGVGQICHQHDCLLIVDAVAS  183 (396)
T ss_dssp             SEETTTTEECCCTTHHHHHHHTTCEEEEECTTT
T ss_pred             CCCCCCceecCHHHHHHHHHHcCCEEEEEcccc
Confidence            357889999999999999999999999999998

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.40  E-value=9.4e-05  Score=49.14  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -++.+|.+.|+++|.++|+++++++++|.+|+.+..
T Consensus       157 ~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~  192 (399)
T 2oga_A          157 PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGAR  192 (399)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCE
T ss_pred             EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCc
Confidence            367899999999999999999999999999985543

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=97.39  E-value=8.5e-05  Score=48.18  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +..+|.||.+.|+++|.++|++++++ ++|.+|+.
T Consensus       145 ~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~  178 (382)
T 4eb5_A          145 QHANNEIGTIQPVEEISEVLAGKAAL-HIDATASV  178 (382)
T ss_dssp             CSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTB
T ss_pred             eccCCCccccCCHHHHHHHHHHCCCE-EEEcchhc
Confidence            34678999999999999999999999 99999983

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=97.39  E-value=0.00013  Score=50.48  Aligned_cols=50  Identities=18%  Similarity=0.083  Sum_probs=35.5

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      .+.|+++|+++|+++|+++++|.+|+............+   +.+|-++.++|
T Consensus       206 ~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~~div~~s~~  255 (483)
T 1rv3_A          206 RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCHVVTTTTH  255 (483)
T ss_dssp             SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCSEEEEESS
T ss_pred             CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---CCCcEEEecCc
Confidence            788999999999999999999999874333222221112   24677777766

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=97.38  E-value=9.7e-05  Score=48.75  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++|..+|+++|.++|+++++++++|++|+.+.
T Consensus       136 ~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~  168 (390)
T 3b8x_A          136 NLLGNPNNFDEINKIIGGRDIILLEDNCESMGA  168 (390)
T ss_dssp             CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTC
T ss_pred             CCccChhhHHHHHHHHHHcCCEEEEECcCcccC
Confidence            568899999999999999999999999998443

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=97.34  E-value=0.00015  Score=47.80  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+.|++   +|.++|+++++++++|.+|+++..
T Consensus       184 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  222 (407)
T 2zc0_A          184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRY  222 (407)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBS
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence            468899999887   899999999999999999998643

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=97.33  E-value=9.1e-05  Score=48.55  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++++|.+|+++..
T Consensus       172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  210 (388)
T 1j32_A          172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY  210 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence            46789998   5599999999999999999999987643

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.32  E-value=0.00016  Score=47.52  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             eeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          8 LGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .|.+.|+++|.++|+++++++++|.+|..
T Consensus       175 ~G~~~~l~~i~~l~~~~~~~li~Dea~~~  203 (417)
T 3n0l_A          175 YARVIDFAKFREIADEIGAYLFADIAHIA  203 (417)
T ss_dssp             CCSCCCHHHHHHHHHHHTCEEEEECTTTH
T ss_pred             cCccCCHHHHHHHHHHcCCEEEEECccch
Confidence            59999999999999999999999999753

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=97.32  E-value=0.00022  Score=48.46  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|++|.+.|+++|+++|+++++++++|.+|+.+.
T Consensus       161 ~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~  195 (400)
T 3nmy_A          161 PTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPM  195 (400)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHH
T ss_pred             CCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence            57899999999999999999999999999998544

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=97.31  E-value=0.00031  Score=48.42  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++|.+.|    +++|+++|+++++++++|.+|.|+.
T Consensus       268 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g  305 (472)
T 1ohv_A          268 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGG  305 (472)
T ss_dssp             BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCC
Confidence            467898888    9999999999999999999998743

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.31  E-value=0.00018  Score=48.14  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc-cee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG-GGA   38 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g-g~~   38 (63)
                      ++.+|.++++++|.++|+++++++++|.+|+ |+.
T Consensus       145 ~~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~  179 (424)
T 2po3_A          145 VHLWGRPCAADQLRKVADEHGLRLYFDAAHALGCA  179 (424)
T ss_dssp             ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred             ECCCCCcCCHHHHHHHHHHcCCEEEEECccccCCe
Confidence            4578999999999999999999999999998 554

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=97.31  E-value=0.00012  Score=49.40  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=25.4

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEeccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAA   33 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa   33 (63)
                      |.+|.++|+++|.++|+++|+|+|+|+.
T Consensus       206 n~tG~~~~l~~i~~la~~~g~~vivd~d  233 (438)
T 1wyu_A          206 NFLGALEDLGPFAEAAHGAGALFVAVAD  233 (438)
T ss_dssp             CTTSBCCCHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCeEEecHHHHHHHHHHcCCEEEEEec
Confidence            7899999999999999999999996543

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=97.30  E-value=0.00033  Score=46.16  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|+++|+++++++++|.+|.++.
T Consensus       189 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g  226 (395)
T 3nx3_A          189 QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMG  226 (395)
T ss_dssp             ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence            467788888    9999999999999999999998763

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.30  E-value=0.00013  Score=49.23  Aligned_cols=36  Identities=3%  Similarity=-0.042  Sum_probs=33.1

Q ss_pred             cccceeeeeCHHHHHHHHHH-cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAE-YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~-~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|.++|++ +++++++|.+|+.+..
T Consensus       156 p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~  192 (404)
T 1e5e_A          156 PANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI  192 (404)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred             CCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhh
Confidence            57899999999999999999 9999999999997654

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.30  E-value=0.00018  Score=47.32  Aligned_cols=36  Identities=11%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|+||.+.|   +++|.++|+++++++++|.+|+++..
T Consensus       170 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  208 (391)
T 3h14_A          170 PANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY  208 (391)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhccc
Confidence            4788999888   88888899999999999999987553

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.29  E-value=0.0001  Score=49.28  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++++|.+   +++++|+++|+++++++++|.+|+++..
T Consensus       203 p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~  241 (421)
T 3l8a_A          203 PHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL  241 (421)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            47889998   8899999999999999999999987654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=97.28  E-value=0.00014  Score=48.70  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|+++|+++++++++|.+|.++.
T Consensus       215 ~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g  252 (429)
T 1s0a_A          215 QGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG  252 (429)
T ss_dssp             ECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCc
Confidence            577998887    9999999999999999999998753

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.28  E-value=0.00019  Score=47.20  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=31.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       173 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  210 (399)
T 1c7n_A          173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLI  210 (399)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCB
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            4678999988   9999999999999999999999765

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=97.26  E-value=0.0002  Score=46.94  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|   +++|.++|+++++++++|.+|+++..
T Consensus       161 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  199 (381)
T 1v2d_A          161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY  199 (381)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc
Confidence            5678898865   89999999999999999999987654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.24  E-value=0.00022  Score=46.43  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++.||.+.|++++.++|+++++++++|.+|+.+
T Consensus       158 p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~  191 (360)
T 3hdo_A          158 PNAPLGPSFPLEYIDELARRCAGMLVLDETYAEF  191 (360)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG
T ss_pred             CCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhh
Confidence            4688999999999999999999999999999874

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=97.23  E-value=0.00019  Score=46.67  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ccccceeeeeCHHHHHHHHH----HcCcEEEecccccc
Q psy14030          3 PGTTVLGAFDPIPAIADICA----EYDMWLHVDAAWGG   36 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~----~~~~~~HvDaa~gg   36 (63)
                      ..+|.||.+.|+++|.++|+    ++++++++|.+|+.
T Consensus       162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~  199 (390)
T 1elu_A          162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSA  199 (390)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTB
T ss_pred             ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEccccc
Confidence            35678999999999999999    99999999999974

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.20  E-value=0.00022  Score=46.21  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=25.7

Q ss_pred             ccce-eeeeC---HHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVL-GAFDP---IPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~t-G~id~---i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ++.+ |.+-+   +++|.++|+++++++|+|.+|.
T Consensus       145 ~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~  179 (357)
T 3lws_A          145 QREIGGVAPAFSELETISRYCRERGIRLHLDGARL  179 (357)
T ss_dssp             BGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             cccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence            3455 77665   8889999999999999999886

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=97.20  E-value=0.00016  Score=48.90  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=32.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcC-cEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYD-MWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~-~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|+++|++++ +++++|.+|+.+..
T Consensus       160 p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~  196 (403)
T 3cog_A          160 PTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF  196 (403)
T ss_dssp             SCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred             CCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc
Confidence            5789999999999999999999 99999999987653

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=97.19  E-value=0.00022  Score=46.51  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.+-|   +++|.++|+++++++++|.+|+++..
T Consensus       163 ~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~  201 (375)
T 3op7_A          163 ANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE  201 (375)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            4688999999   99999999999999999999987543

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=97.19  E-value=0.00024  Score=48.45  Aligned_cols=34  Identities=9%  Similarity=0.166  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+|.+|.+.|+++|+++|+++++++++|.+|+..
T Consensus       175 p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~  208 (414)
T 3ndn_A          175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATP  208 (414)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHH
T ss_pred             CCCCCCccccHHHHHHHHHHcCCEEEEECCCccc
Confidence            5789999999999999999999999999999854

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=97.18  E-value=0.00025  Score=47.10  Aligned_cols=35  Identities=14%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+.+   +++|+++|+++++++++|.+|+.+.
T Consensus       191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~  228 (437)
T 3g0t_A          191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMD  228 (437)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcc
Confidence            4788999887   6678888999999999999998654

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=97.18  E-value=0.00014  Score=49.96  Aligned_cols=35  Identities=11%  Similarity=0.124  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|+++|++  +++++++|.+|+.+.
T Consensus       172 p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~  208 (409)
T 3jzl_A          172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFV  208 (409)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred             CCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence            56899999999999999999  999999999998655

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=97.16  E-value=0.00018  Score=47.38  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+   +++++|+++|+++++++++|.+|+++..
T Consensus       176 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  214 (410)
T 3e2y_A          176 PHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVY  214 (410)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhccc
Confidence            46889998   7899999999999999999999987553

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=97.13  E-value=0.0003  Score=45.86  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       155 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  192 (364)
T 1lc5_A          155 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI  192 (364)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhc
Confidence            3678999988   8999999999999999999998764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.13  E-value=0.00034  Score=45.90  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=31.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|   +++|.++|+++++++++|.+|+++..
T Consensus       171 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  209 (390)
T 1d2f_A          171 PQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW  209 (390)
T ss_dssp             SCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            4778999877   88999999999999999999998653

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=97.13  E-value=0.00039  Score=48.20  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|+++|++  +++++++|.+|+.+.
T Consensus       189 p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~  225 (427)
T 3i16_A          189 GWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFM  225 (427)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTS
T ss_pred             CCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            47889999999999999999  999999999998765

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.11  E-value=0.00028  Score=46.76  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       183 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~  221 (406)
T 1xi9_A          183 PNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY  221 (406)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc
Confidence            4678998865   99999999999999999999988654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=97.11  E-value=0.0004  Score=45.62  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             eeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          8 LGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .|.+.|+++|.++|+++++++++|.+|+...
T Consensus       180 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  210 (420)
T 3gbx_A          180 YSGVVDWAKMREIADSIGAYLFVDMAHVAGL  210 (420)
T ss_dssp             CCSCCCHHHHHHHHHHTTCEEEEECTTTHHH
T ss_pred             cCCccCHHHHHHHHHHcCCEEEEECCcchhc
Confidence            4668899999999999999999999986433

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=97.11  E-value=0.00031  Score=47.19  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++++|.+|+++..
T Consensus       200 p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~  238 (427)
T 3dyd_A          200 PSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF  238 (427)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhcc
Confidence            4789999999   99999999999999999999998654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=97.10  E-value=0.00044  Score=45.48  Aligned_cols=34  Identities=18%  Similarity=0.087  Sum_probs=28.5

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ...|...++++|.++|+++|+++++|.+|...+.
T Consensus       181 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~  214 (425)
T 3ecd_A          181 SAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVI  214 (425)
T ss_dssp             SCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHH
T ss_pred             ccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhh
Confidence            3457899999999999999999999999754433

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.10  E-value=0.00035  Score=46.12  Aligned_cols=36  Identities=6%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|   +++|.++|+++++++++|.+|+.+..
T Consensus       183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~  221 (389)
T 1o4s_A          183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY  221 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            4678999866   99999999999999999999997654

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=97.09  E-value=0.0004  Score=45.49  Aligned_cols=36  Identities=22%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   ++++|.++|+++++++++|.+|+++..
T Consensus       169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  207 (389)
T 1gd9_A          169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY  207 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence            467789886   499999999999999999999998654

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.09  E-value=0.00024  Score=48.99  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=32.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.+|.+.|+++|+++|+++++++++|.+|+....
T Consensus       176 p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~  211 (430)
T 3ri6_A          176 ISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL  211 (430)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT
T ss_pred             CCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence            578899999999999999999999999999985544

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=97.07  E-value=0.00033  Score=46.33  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+.|   +++|.++|+++++++++|.+|+.+.
T Consensus       186 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  223 (416)
T 1bw0_A          186 PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMV  223 (416)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            4678999998   9999999999999999999999854

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=97.07  E-value=0.00032  Score=46.85  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+++||.+.|   +++|.++|+++++++++|.+|+.
T Consensus       215 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~  250 (444)
T 3if2_A          215 PTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGM  250 (444)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4688999999   88888899999999999999985

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=97.07  E-value=0.00053  Score=44.91  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +..|...++++|.++|+++++++++|.+|+.
T Consensus       172 ~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~  202 (405)
T 2vi8_A          172 AAYPRIIDFAKFREIADEVGAYLMVDMAHIA  202 (405)
T ss_dssp             SSCCSCCCHHHHHHHHHHHTCEEEEECTTTH
T ss_pred             CCCCccCCHHHHHHHHHHcCCEEEEEccccc
Confidence            4457777999999999999999999999984

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=97.03  E-value=0.0004  Score=48.22  Aligned_cols=35  Identities=14%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ..+|.+|.+.|+++|+++|+++++++++|.+|+..
T Consensus       225 ~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g  259 (464)
T 1ibj_A          225 SPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSP  259 (464)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCT
T ss_pred             CCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccc
Confidence            35688999999999999999999999999999753

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.01  E-value=0.00044  Score=44.73  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             cce-eeeeCHHHH---HHHHHHcCcEEEeccccccee
Q psy14030          6 TVL-GAFDPIPAI---ADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~t-G~id~i~~i---~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.+ |.+-|.+++   .++|+++++++++|.+|..+.
T Consensus       148 n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~  184 (359)
T 3pj0_A          148 REIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEI  184 (359)
T ss_dssp             GGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGG
T ss_pred             cCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcc
Confidence            444 687676555   889999999999999886443

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=97.01  E-value=0.00043  Score=46.14  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       197 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~  234 (428)
T 1iay_A          197 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence            4678999999   9999999999999999999999853

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=96.99  E-value=0.00018  Score=47.93  Aligned_cols=35  Identities=11%  Similarity=0.157  Sum_probs=31.4

Q ss_pred             ccccee-eeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLG-AFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG-~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++++| .+.++++|.++|+++++++++|.+|+.+.
T Consensus       150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~  185 (374)
T 2aeu_A          150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARV  185 (374)
T ss_dssp             CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred             CCCCCCCCcccHHHHHHHHHHcCCEEEEECCccccc
Confidence            467889 89999999999999999999999998654

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=96.98  E-value=0.00023  Score=46.92  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             cccceee----eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGA----FDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~----id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++||.    .+++++|.++|+++++++++|.+|+++.
T Consensus       192 ~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  230 (397)
T 2ord_A          192 IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMG  230 (397)
T ss_dssp             EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence            5678898    4889999999999999999999998653

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=96.98  E-value=0.00059  Score=44.37  Aligned_cols=36  Identities=11%  Similarity=0.014  Sum_probs=29.4

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.+..
T Consensus       163 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  201 (376)
T 3ezs_A          163 PNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYE  201 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBS
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhcc
Confidence            4788999877   55666678899999999999998554

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=96.98  E-value=0.00053  Score=45.61  Aligned_cols=36  Identities=14%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       191 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  229 (429)
T 1yiz_A          191 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF  229 (429)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccccccc
Confidence            4678898875   89999999999999999999997653

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=96.97  E-value=0.00035  Score=45.76  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++++|.+|+.+..
T Consensus       182 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  220 (397)
T 3fsl_A          182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGA  220 (397)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSS
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhcc
Confidence            47889998   5566888999999999999999987653

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=96.93  E-value=0.00073  Score=44.12  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  204 (376)
T 2dou_A          167 PNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQV  204 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence            4678998876   6778889999999999999998765

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=96.93  E-value=0.00058  Score=44.50  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=31.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-|++ |.++|+++++++++|.+|+.+..
T Consensus       163 p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~  197 (370)
T 2z61_A          163 PSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVY  197 (370)
T ss_dssp             SCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBS
T ss_pred             CCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhccc
Confidence            467899999999 99999999999999999997543

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=96.93  E-value=0.00071  Score=44.32  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ...|.+.|+++|.++|+++++++++|.+|+..
T Consensus       172 p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g  203 (407)
T 2dkj_A          172 SAYPRFWDFKAFREIADEVGAYLVVDMAHFAG  203 (407)
T ss_dssp             SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHH
T ss_pred             cccCCCCCHHHHHHHHHHcCCEEEEEcccccc
Confidence            34467889999999999999999999999873

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=96.89  E-value=0.00049  Score=45.50  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   ++++|.++|+++++++++|.+|+++..
T Consensus       183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  221 (422)
T 3fvs_A          183 PNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY  221 (422)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhcc
Confidence            467899988   589999999999999999999987543

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=96.89  E-value=0.00057  Score=44.79  Aligned_cols=36  Identities=8%  Similarity=0.031  Sum_probs=30.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-|   +++|.++|+++++++++|.+|+++..
T Consensus       172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  210 (386)
T 1u08_A          172 PHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINF  210 (386)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBC
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence            4678898875   68888999999999999999987543

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=96.89  E-value=0.00041  Score=46.33  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=30.3

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|+++|+++++++++|.+|+++..
T Consensus       204 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~  242 (420)
T 4f4e_A          204 CHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE  242 (420)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccC
Confidence            47889988   5577888889999999999999987664

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.00073  Score=44.80  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=30.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  206 (411)
T 2o0r_A          169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLV  206 (411)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            4678999865   5899999999999999999998765

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.00061  Score=45.65  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=29.7

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|+++|+++++++++|-+|.++.
T Consensus       222 ~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g  259 (419)
T 2eo5_A          222 QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLG  259 (419)
T ss_dssp             BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence            456898777    9999999999999999999998764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=96.88  E-value=0.00073  Score=45.10  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++++|.+.+    +++|.++|+++++++.+|-+|+++
T Consensus       209 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~  245 (427)
T 3fq8_A          209 VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF  245 (427)
T ss_dssp             BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence            456788999    999999999999999999999977

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=96.88  E-value=0.00064  Score=45.50  Aligned_cols=33  Identities=21%  Similarity=0.527  Sum_probs=29.7

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +++.|.+.+    +++|.++|+++++++++|-+|.++
T Consensus       210 ~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~  246 (429)
T 4e77_A          210 AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF  246 (429)
T ss_dssp             BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence            355788888    999999999999999999999977

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=96.86  E-value=0.00069  Score=46.08  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|+++|+++++++++|.+|.++.
T Consensus       241 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g  278 (449)
T 2cjg_A          241 QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG  278 (449)
T ss_dssp             ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCC
Confidence            467898777    9999999999999999999999754

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=96.84  E-value=0.00065  Score=44.97  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=28.6

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +||.+.+    +++|.++|+++++++++|.+|+++.
T Consensus       211 ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  246 (426)
T 1sff_A          211 EGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAG  246 (426)
T ss_dssp             TTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccC
Confidence            3897777    9999999999999999999999753

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=96.84  E-value=0.00074  Score=45.24  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++++|.+.|    +++|.++|+++++++.+|.+|+++
T Consensus       213 ~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~  249 (434)
T 2epj_A          213 IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF  249 (434)
T ss_dssp             BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred             cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce
Confidence            356898888    999999999999999999999976

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=96.81  E-value=0.00074  Score=45.15  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++++|.+.+    +++|.++|+++++++++|-+|.+|
T Consensus       212 ~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~  248 (434)
T 3l44_A          212 VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF  248 (434)
T ss_dssp             BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce
Confidence            456788888    999999999999999999999986

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=96.81  E-value=0.00086  Score=43.87  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             cccceeeeeCHHH---HHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPA---IADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~---i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.++   |.++|+++++++++|.+|+.+.
T Consensus       177 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  214 (396)
T 3jtx_A          177 PNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIY  214 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            4788999877666   8888899999999999998754

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=96.81  E-value=0.00075  Score=44.45  Aligned_cols=33  Identities=18%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.
T Consensus       189 p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~  224 (417)
T 3g7q_A          189 PTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV  224 (417)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence            4789999988   88888899999999999999985

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=96.81  E-value=0.00077  Score=45.36  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|.++|+++++++++|.+|.++.
T Consensus       229 ~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g  266 (449)
T 3a8u_X          229 AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG  266 (449)
T ss_dssp             BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence            355898888    9999999999999999999997654

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=96.80  E-value=0.00097  Score=43.94  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.+..
T Consensus       173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  211 (385)
T 1b5p_A          173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY  211 (385)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence            4678999855   88999999999999999999987543

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=96.79  E-value=0.0011  Score=45.97  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .++.+|.+.|+++|+++|++  +++++++|.+|+.+.
T Consensus       189 p~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~  225 (427)
T 3hvy_A          189 GWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFV  225 (427)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTT
T ss_pred             CCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccc
Confidence            47889999999999999999  899999999998665

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=96.78  E-value=0.00083  Score=45.09  Aligned_cols=31  Identities=13%  Similarity=0.049  Sum_probs=27.8

Q ss_pred             cceeeeeC---HHHHHHHHHHcCcEEEecccccc
Q psy14030          6 TVLGAFDP---IPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         6 t~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +.+|.+-+   +++|+++|+++++++++|.+|+.
T Consensus       186 ~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~  219 (456)
T 2ez2_A          186 LAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV  219 (456)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence            37888776   99999999999999999999975

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=96.78  E-value=0.00056  Score=45.78  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+++||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       200 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~  238 (435)
T 3piu_A          200 PSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF  238 (435)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            4678898855   57788889999999999999987543

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=96.77  E-value=0.00078  Score=43.69  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=32.2

Q ss_pred             cccceeeeeCHHHHHHHHHHc--CcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+.|++++.++++..  ++++++|.+|+++..
T Consensus       164 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~  201 (363)
T 3ffh_A          164 PNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT  201 (363)
T ss_dssp             SCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC
Confidence            478899999999999999987  999999999997654

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.00064  Score=45.98  Aligned_cols=35  Identities=11%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+   +++++|+++|+++++++.+|.+|+++.
T Consensus       210 p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~  247 (447)
T 3b46_A          210 PHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLY  247 (447)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence            46788988   579999999999999999999998754

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=96.76  E-value=0.00056  Score=47.11  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~~   39 (63)
                      .++.+|.++++++|+++|++  +++++++|.+|+.+..
T Consensus       178 p~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~  215 (431)
T 3ht4_A          178 ATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE  215 (431)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred             CCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence            45778999999999999999  9999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.76  E-value=0.0012  Score=44.14  Aligned_cols=36  Identities=19%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  235 (425)
T 1vp4_A          197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY  235 (425)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence            4578898876   56788899999999999999987653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=96.75  E-value=0.00092  Score=44.04  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-|.+   +|.++|+++++++++|.+|+++..
T Consensus       172 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  210 (397)
T 2zyj_A          172 FQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYF  210 (397)
T ss_dssp             SCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBC
T ss_pred             CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccC
Confidence            357889987755   888899999999999999998653

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=96.71  E-value=0.00035  Score=45.43  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=28.7

Q ss_pred             cccceeee---eCHHHHHHHHHHc--CcEEEeccccccee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEY--DMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~--~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+   +++++|.++|+++  |+++++|.+|+.+.
T Consensus       166 ~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~  205 (367)
T 3euc_A          166 PNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA  205 (367)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc
Confidence            46789998   4577777778899  99999999998754

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=96.70  E-value=0.001  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+.+    +++|+++|+++++++++|-+|.++.
T Consensus       213 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g  250 (433)
T 1zod_A          213 LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVG  250 (433)
T ss_dssp             ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence            356897777    9999999999999999999999764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=96.67  E-value=0.0011  Score=42.77  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+.|++++.++++.  +++++++|.+|+++..
T Consensus       150 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~  187 (354)
T 3ly1_A          150 PNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVN  187 (354)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCC
T ss_pred             CCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhcc
Confidence            57889999999999999988  9999999999987553

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=96.66  E-value=0.0014  Score=42.53  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=28.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|   +++|.++|+++++++++|.+|+++.
T Consensus       159 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  196 (377)
T 3fdb_A          159 PYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLV  196 (377)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhh
Confidence            3678998875   5666667889999999999998754

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=96.66  E-value=0.0012  Score=44.19  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++++|.+.+    +++|.++|+++++++++|-+|+++
T Consensus       211 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~  247 (439)
T 3dxv_A          211 QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL  247 (439)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence            456788888    999999999999999999999875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=96.66  E-value=0.0024  Score=43.00  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=29.3

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+ +|.+-|    +++|+++|+++++++++|-+|.++.
T Consensus       226 ~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  262 (452)
T 3n5m_A          226 TG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFG  262 (452)
T ss_dssp             TT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCC
Confidence            36 898887    9999999999999999999998764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=96.65  E-value=0.0014  Score=43.48  Aligned_cols=36  Identities=11%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  219 (412)
T 2x5d_A          181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY  219 (412)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            3677898865   68888999999999999999998653

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=96.64  E-value=0.00081  Score=44.39  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++++|.+|.++..
T Consensus       192 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~  230 (412)
T 1ajs_A          192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS  230 (412)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence            46788988   4566888999999999999999877643

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=96.63  E-value=0.00061  Score=44.72  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=25.5

Q ss_pred             eeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ..+++++|.++|+++++++++|.+|+++.
T Consensus       202 ~~~~l~~l~~l~~~~~~~li~De~~~~~~  230 (406)
T 4adb_A          202 SNAFLQGLRELCNRHNALLIFDEVQTGVG  230 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            45689999999999999999999998653

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=96.63  E-value=0.0013  Score=44.06  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      ++++|.+.+    +++|.++|+++++++++|-+|.++
T Consensus       210 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~  246 (429)
T 3k28_A          210 AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF  246 (429)
T ss_dssp             BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence            456788888    999999999999999999999876

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=96.63  E-value=0.0015  Score=44.26  Aligned_cols=28  Identities=25%  Similarity=0.083  Sum_probs=24.1

Q ss_pred             eeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          9 GAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         9 G~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +...++++|+++|+++++++++|.+|..
T Consensus       197 ~~~~~l~~i~~l~~~~g~lli~Dea~~~  224 (447)
T 3h7f_A          197 PRVLDFAAFRSIADEVGAKLLVDMAHFA  224 (447)
T ss_dssp             CSCCCHHHHHHHHHHHTCEEEEECTTTH
T ss_pred             CCccCHHHHHHHHHHcCCEEEEECCchh
Confidence            3344999999999999999999999753

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=96.62  E-value=0.0014  Score=43.89  Aligned_cols=36  Identities=17%  Similarity=0.114  Sum_probs=29.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++.+|.+|+++..
T Consensus       218 p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~  256 (449)
T 3qgu_A          218 PNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS  256 (449)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence            4678898765   77778889999999999999998543

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=96.57  E-value=0.0016  Score=42.50  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=32.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+.|++++.++++.+++++++|.+|+++..
T Consensus       173 ~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~  208 (369)
T 3cq5_A          173 PNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSP  208 (369)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCC
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcC
Confidence            467899999999999999999999999999997763

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=96.56  E-value=0.002  Score=42.18  Aligned_cols=36  Identities=11%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHH------cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAE------YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~------~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|++      +++++++|.+|+.+..
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~  225 (398)
T 3ele_A          181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY  225 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccccccc
Confidence            4788999888   6666688888      8999999999987553

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=96.56  E-value=0.0023  Score=43.30  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             cceeeee----CHHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFD----PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id----~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++|.+.    ++++|+++|+++++++.+|.+|.|+.
T Consensus       223 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g  259 (433)
T 1z7d_A          223 GEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG  259 (433)
T ss_dssp             STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence            4578765    79999999999999999999998753

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=96.56  E-value=0.0014  Score=43.55  Aligned_cols=35  Identities=14%  Similarity=0.047  Sum_probs=29.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++.||.+-|   +++|.++|+++++++.+|.+|+.+.
T Consensus       190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  227 (404)
T 2o1b_A          190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFG  227 (404)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCB
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence            4678998875   6788889999999999999998764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=96.56  E-value=0.0023  Score=43.46  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             cceeeee----CHHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFD----PIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id----~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++|.+.    ++++|.++|+++++++++|.+|.|+.
T Consensus       234 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g  270 (439)
T 2oat_A          234 GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLA  270 (439)
T ss_dssp             TTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence            4578766    79999999999999999999998753

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=96.55  E-value=0.0015  Score=44.27  Aligned_cols=36  Identities=19%  Similarity=0.061  Sum_probs=29.9

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|+||.+-+.+   +|+++|+++++++++|.+|.++..
T Consensus       211 p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~  249 (448)
T 3meb_A          211 AHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFAT  249 (448)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSS
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence            478899887755   588899999999999999987654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=96.54  E-value=0.0011  Score=43.94  Aligned_cols=36  Identities=22%  Similarity=0.086  Sum_probs=29.3

Q ss_pred             ccccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -.+|.||.+-+   +++|.++|+++++++++|.+|+++.
T Consensus       184 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  222 (412)
T 1yaa_A          184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFA  222 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence            35678998855   6678888999999999999997654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=96.51  E-value=0.0019  Score=42.67  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|   +++|.++|+++++++.+|.+|+++.
T Consensus       172 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  209 (400)
T 3asa_A          172 PNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFI  209 (400)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhh
Confidence            4688999887   5567788899999999999999654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=96.51  E-value=0.0017  Score=41.86  Aligned_cols=36  Identities=11%  Similarity=-0.002  Sum_probs=28.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-|   +++|+++|+++++++++|.+|+++..
T Consensus       153 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  191 (361)
T 3ftb_A          153 PNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTG  191 (361)
T ss_dssp             TBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcC
Confidence            4788998876   55566667799999999999986654

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=96.49  E-value=0.0011  Score=42.61  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             cccce-eeeeC---HHHHHHHHHHcCcEEEeccccc
Q psy14030          4 GTTVL-GAFDP---IPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         4 Gtt~t-G~id~---i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      .+++| |.+-|   +++|.++|+++++++++|.+|.
T Consensus       141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~  176 (347)
T 1jg8_A          141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI  176 (347)
T ss_dssp             SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH
T ss_pred             cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh
Confidence            35677 88865   5688899999999999999874

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=96.45  E-value=0.0012  Score=43.41  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             ccccceee---eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGA---FDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~---id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..+|+||.   .+++++|+++|+++++++.+|-+|..+..
T Consensus       183 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~  222 (401)
T 7aat_A          183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS  222 (401)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccC
Confidence            35788995   45588888899999999999999887654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=96.44  E-value=0.0014  Score=45.43  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+.+..
T Consensus       246 p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~  284 (500)
T 3tcm_A          246 PGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIY  284 (500)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcccccc
Confidence            4678998855   66666679999999999999987554

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=96.44  E-value=0.0013  Score=42.98  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  219 (396)
T 2q7w_A          181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFAR  219 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence            4677888765   55788889999999999999987643

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=96.42  E-value=0.0013  Score=43.94  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -++.+|.+.|+++|.++|+ +++++++|++|+...
T Consensus       135 ~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~  168 (377)
T 3ju7_A          135 PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGL  168 (377)
T ss_dssp             CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTC
T ss_pred             EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCC
Confidence            4567899999999999999 999999999997443

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=96.39  E-value=0.0014  Score=42.46  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=31.0

Q ss_pred             cccceeeeeCHHHHHHHHH--HcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICA--EYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~--~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+.|++++.++++  ++++++++|.+|+.+.
T Consensus       162 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~  198 (365)
T 3get_A          162 PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFA  198 (365)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHH
T ss_pred             CCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHh
Confidence            5788999999999999998  6799999999998655

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=96.38  E-value=0.00032  Score=46.44  Aligned_cols=49  Identities=18%  Similarity=0.128  Sum_probs=35.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+|.||.+.|+++|.++   +++++++|++|+.+....+        ++.+|.+..++|
T Consensus       173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~s  221 (398)
T 2fyf_A          173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQ  221 (398)
T ss_dssp             SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTT
T ss_pred             CcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccC--------cccCcEEEEecC
Confidence            367899999999999887   8999999999986543211        112566666654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=96.36  E-value=0.0022  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=31.5

Q ss_pred             cccceeeeeC---HHHHHHHHHH-----cCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAE-----YDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~-----~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|++     +++++.+|.+|+++..
T Consensus       198 p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~  241 (430)
T 2x5f_A          198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFY  241 (430)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccC
Confidence            3778999988   8899999999     9999999999997654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=96.34  E-value=0.0016  Score=43.90  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +++|.+-|    +++|.++|+++++++.+|-+|+++
T Consensus       212 ~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~  247 (453)
T 2cy8_A          212 SHFGVTPVSDSFLREGAELARQYGALFILDEVISGF  247 (453)
T ss_dssp             HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence            45898877    999999999999999999999976

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=96.31  E-value=0.0029  Score=41.84  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             cccceeeeeCHHH---HHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPA---IADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~---i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+.++   |+++|+++++++.+|-+|+++..
T Consensus       192 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~  230 (409)
T 4eu1_A          192 AHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFAT  230 (409)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccccccc
Confidence            4788998877555   88889999999999999987653

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=96.29  E-value=0.0029  Score=41.39  Aligned_cols=36  Identities=22%  Similarity=0.084  Sum_probs=29.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++++|.+|+++..
T Consensus       178 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~  216 (394)
T 2ay1_A          178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD  216 (394)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcccccc
Confidence            4678898866   55778889999999999999987643

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=96.29  E-value=0.0026  Score=43.62  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+-+    +++|+++|+++++++.+|-+|.|+.
T Consensus       244 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g  281 (457)
T 3tfu_A          244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFG  281 (457)
T ss_dssp             ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCc
Confidence            467788876    9999999999999999999998764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=96.29  E-value=0.003  Score=42.99  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++|.||.+-+   +++|.++|+++++++.+|.+|+.+.+
T Consensus       226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~  264 (448)
T 3aow_A          226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRY  264 (448)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBC
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence            5678898876   56888999999999999999987643

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=96.26  E-value=0.0026  Score=42.45  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++|.+.+    +++|+++|+++++++++|-+|.++.
T Consensus       203 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~  238 (430)
T 3i4j_A          203 SDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMG  238 (430)
T ss_dssp             GGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             cCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence            7787777    9999999999999999999998764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=96.25  E-value=0.0035  Score=41.93  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+.+   +|.++|+++++++.+|.+|+.+.
T Consensus       200 ~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~  237 (425)
T 2r2n_A          200 GNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ  237 (425)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred             CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence            367899988766   88889999999999999998654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=96.13  E-value=0.0019  Score=43.43  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             eeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+++++|+++|+++++++++|.+|.++.
T Consensus       221 ~~~l~~l~~l~~~~gi~lI~Dev~~g~~  248 (420)
T 2pb2_A          221 PEFLKGLRDLCDEHQALLVFDEVQCGMG  248 (420)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCcCcc
Confidence            4789999999999999999999998753

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=96.10  E-value=0.0027  Score=44.08  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             cccceeee---eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+   +++++|.++|+++++++.+|-+|+.+.+
T Consensus       244 p~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~  282 (498)
T 3ihj_A          244 PGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVY  282 (498)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccccc
Confidence            46789988   5577788899999999999999987654

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=96.01  E-value=0.0017  Score=43.35  Aligned_cols=34  Identities=15%  Similarity=0.003  Sum_probs=29.3

Q ss_pred             cccceeeeeCHH---HHHHHH-HHcCcEEEecccccce
Q psy14030          4 GTTVLGAFDPIP---AIADIC-AEYDMWLHVDAAWGGG   37 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~-~~~~~~~HvDaa~gg~   37 (63)
                      .+|.||.+-+.+   +|.++| +++++++++|.+|+.+
T Consensus       190 ~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~  227 (427)
T 3ppl_A          190 FSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVH  227 (427)
T ss_dssp             SCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred             CCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence            478999998888   777777 8899999999999874

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=95.95  E-value=0.0054  Score=40.83  Aligned_cols=36  Identities=11%  Similarity=0.105  Sum_probs=28.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++.+|.+|+.+..
T Consensus       207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~  245 (432)
T 3ei9_A          207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS  245 (432)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhcc
Confidence            4678888765   66666679999999999999997643

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=95.93  E-value=0.011  Score=40.08  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=28.7

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++.|.+-+    +++|+++|+++++++.+|-+|.++.
T Consensus       237 ~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g  274 (451)
T 3oks_A          237 QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA  274 (451)
T ss_dssp             BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence            345567766    9999999999999999999998764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=94.91  E-value=0.0013  Score=43.35  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-+   +++|.++|+++++++.+|.+|+++..
T Consensus       173 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  211 (392)
T 3b1d_A          173 PHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL  211 (392)
Confidence            4677888755   88999999999999999999987653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=95.90  E-value=0.012  Score=39.69  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.|.+-+    +++|+++|+++++++.+|-+|.++.
T Consensus       222 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g  258 (448)
T 3dod_A          222 GASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG  258 (448)
T ss_dssp             STTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence            45676666    9999999999999999999998764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=95.75  E-value=0.007  Score=41.06  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=29.2

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +++.|.+-+    +++|+++|+++++++.+|-+|.++.
T Consensus       229 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  266 (459)
T 4a6r_A          229 QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFG  266 (459)
T ss_dssp             BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            345677777    9999999999999999999998764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=95.61  E-value=0.0098  Score=38.84  Aligned_cols=35  Identities=9%  Similarity=-0.084  Sum_probs=28.4

Q ss_pred             cccceeeeeCHHHHHHHHHH--cCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAE--YDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~--~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|.+++.++++.  +++++++|.+|+.+.
T Consensus       155 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~  191 (356)
T 1fg7_A          155 PNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFC  191 (356)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhc
Confidence            47889999887777666554  899999999999765

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=95.58  E-value=0.006  Score=40.33  Aligned_cols=35  Identities=11%  Similarity=-0.033  Sum_probs=28.9

Q ss_pred             ccceeeeeCHHHHHHHHH---------HcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICA---------EYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~---------~~~~~~HvDaa~gg~~~   39 (63)
                      +|.||.+-+.+++.++++         ++++++.+|.+|.++..
T Consensus       190 ~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~  233 (418)
T 3rq1_A          190 NNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSG  233 (418)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccC
Confidence            788999988777776655         88999999999987653

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=95.43  E-value=0.01  Score=40.19  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++++|.+-+    +++|+++|+++++++.+|-+|.++.
T Consensus       231 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  268 (460)
T 3gju_A          231 LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFG  268 (460)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            455676666    9999999999999999999998764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=95.36  E-value=0.0031  Score=41.83  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             cccceeeeeCHH---HHHHHH-HHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIP---AIADIC-AEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~-~~~~~~~HvDaa~gg   36 (63)
                      .+|.||.+-+.+   +|+++| +++++++++|.+|+.
T Consensus       182 ~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~  218 (423)
T 3ez1_A          182 YSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV  218 (423)
T ss_dssp             SCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence            478899998888   677777 789999999999984

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=95.35  E-value=0.011  Score=40.29  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=28.0

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEeccccccee
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      ++.|.+-+    +++|+++|+++++++.+|-+|.++.
T Consensus       236 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  272 (453)
T 4ffc_A          236 GEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA  272 (453)
T ss_dssp             TTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence            44566766    9999999999999999999998763

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=95.35  E-value=0.012  Score=37.39  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=29.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+.|++++.+++++++..+ +|.+|+.+.
T Consensus       144 p~nptG~~~~~~~l~~l~~~~~~~i-vDea~~~~~  177 (337)
T 3p1t_A          144 PSNPTGQALSAGELDQLRQRAGKLL-IDETYVDYS  177 (337)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHCSEEE-EECTTGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHhCCcEE-EECCChhhc
Confidence            4789999999999999999999755 599998644

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=95.30  E-value=0.012  Score=40.45  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +++.|.+-+    +++|+++|+++++++.+|-+|.||..
T Consensus       233 ~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr  271 (472)
T 3hmu_A          233 QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR  271 (472)
T ss_dssp             BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcc
Confidence            355677877    99999999999999999999988643

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=95.11  E-value=0.013  Score=40.95  Aligned_cols=36  Identities=14%  Similarity=0.022  Sum_probs=28.7

Q ss_pred             cccceeeeeCHH---HHHHHHH-HcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICA-EYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~-~~~~~~HvDaa~gg~~~   39 (63)
                      .++.||.+-+.+   +|+++|+ ++++++++|.+|+.+..
T Consensus       253 p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~  292 (533)
T 3f6t_A          253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP  292 (533)
T ss_dssp             SCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGST
T ss_pred             CCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcccccc
Confidence            467899987776   6677777 58999999999987653

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=95.05  E-value=0.019  Score=36.95  Aligned_cols=35  Identities=9%  Similarity=-0.014  Sum_probs=30.8

Q ss_pred             cccceeeeeCHHHHHHHHHHcC-cEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYD-MWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~-~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|++++.++++..+ .++.+|.+|+.+.
T Consensus       138 p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~  173 (350)
T 3fkd_A          138 PNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFT  173 (350)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSC
T ss_pred             CCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhc
Confidence            4788999999999999999875 7999999998654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=95.04  E-value=0.016  Score=39.85  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             ccceeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +++.|.+-+    +++|+++|+++++++.+|-+|.|+..
T Consensus       231 ~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr  269 (476)
T 3i5t_A          231 LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGR  269 (476)
T ss_dssp             BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence            345676565    99999999999999999999988643

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=95.03  E-value=0.012  Score=37.93  Aligned_cols=34  Identities=15%  Similarity=0.027  Sum_probs=30.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|.+++.++++..+ ++++|.+|+.+.
T Consensus       147 p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~  180 (335)
T 1uu1_A          147 PNNPTGHVFEREEIERILKTGA-FVALDEAYYEFH  180 (335)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhc
Confidence            4788999999999999999889 999999998643

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=94.60  E-value=0.019  Score=38.24  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      +++|.+-|    +++|.++ +++++++.+|-+|+++
T Consensus       210 ~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~  244 (424)
T 2e7u_A          210 GNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF  244 (424)
T ss_dssp             CTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT
T ss_pred             CCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc
Confidence            34898877    9999999 9999999999999986

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=94.45  E-value=0.013  Score=43.42  Aligned_cols=38  Identities=21%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccch
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHR   45 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~   45 (63)
                      |.+|.+-|+++|+++|+++  ++++|.||+..+.+.+..+
T Consensus       307 n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~  344 (715)
T 3n75_A          307 TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYE  344 (715)
T ss_dssp             CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGT
T ss_pred             CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCccc
Confidence            7889999999999999865  4899999997665555443

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=94.22  E-value=0.011  Score=39.39  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=27.1

Q ss_pred             cccceeeeeCHH---HHHHHHH-HcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIP---AIADICA-EYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~-~~~~~~HvDaa~gg   36 (63)
                      .+|.||.+-+.+   +|.++|+ ++++++++|.+|+.
T Consensus       188 ~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~  224 (422)
T 3d6k_A          188 FGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL  224 (422)
T ss_dssp             SCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccc
Confidence            478899998887   5666666 89999999999973

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=93.67  E-value=0.0064  Score=41.51  Aligned_cols=30  Identities=17%  Similarity=0.088  Sum_probs=24.4

Q ss_pred             ccceeee-eCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAF-DPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~i-d~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .|.+|++ +|+++|.     +++++|+|++|+....
T Consensus       176 et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~  206 (386)
T 3qm2_A          176 ETIDGIAIDETPDFG-----PEVVVTADFSSTILSA  206 (386)
T ss_dssp             ETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS
T ss_pred             cCCcCEecCchhhhc-----CCCEEEEEcccccCCC
Confidence            4556996 9999986     7999999999976544

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=93.58  E-value=0.0075  Score=41.21  Aligned_cols=30  Identities=20%  Similarity=-0.114  Sum_probs=24.3

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .|.+|+++|+     +++++++++|||++|+....
T Consensus       162 et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~  191 (377)
T 3e77_A          162 ETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK  191 (377)
T ss_dssp             ETTTTEECSS-----CCCCTTCCEEEECTTTTTSS
T ss_pred             cCchheEchh-----hhccCCCEEEEEcccccCCC
Confidence            4557999999     46788999999999976544

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=92.86  E-value=0.012  Score=38.06  Aligned_cols=29  Identities=21%  Similarity=0.045  Sum_probs=24.5

Q ss_pred             cccceeee-eCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAF-DPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~i-d~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+ +|+++|      +++++++|.+|+.+.
T Consensus       151 ~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~  180 (362)
T 2c0r_A          151 NETIEGAQFKAFPDT------GSVPLIGDMSSDILS  180 (362)
T ss_dssp             EETTTTEECSSCCCC------TTSCEEEECTTTTTS
T ss_pred             CcCccceeccccccc------CCCEEEEEChhhccC
Confidence            57899994 888887      899999999998653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=91.03  E-value=0.13  Score=36.16  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=27.9

Q ss_pred             cccceeeeeC---HHHHHHHH--HHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADIC--AEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~--~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|  +++++++.+|.+|+.+.
T Consensus       254 p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~  293 (546)
T 2zy4_A          254 PSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFA  293 (546)
T ss_dssp             SCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGS
T ss_pred             CCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhc
Confidence            4788999876   55567777  67899999999999765

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=90.08  E-value=0.047  Score=38.14  Aligned_cols=30  Identities=10%  Similarity=0.072  Sum_probs=26.9

Q ss_pred             cceeeeeC----HHHHHHHHHHcCcEEEeccccc
Q psy14030          6 TVLGAFDP----IPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         6 t~tG~id~----i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      +++|.+-|    +++|+++|+++++++.+|-+|.
T Consensus       244 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~  277 (465)
T 2yky_A          244 GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT  277 (465)
Confidence            34787776    9999999999999999999999

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=90.62  E-value=0.23  Score=35.71  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+..--.-|++++++||++.|.++.+|.|+-........++..   ++.+|-+|...|
T Consensus       210 G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP---~~~ADvVTtTTH  265 (490)
T 3ou5_A          210 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTH  265 (490)
T ss_dssp             CCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESS
T ss_pred             CCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCc---cccceEEecccc
Confidence            34444445689999999999999999999985544443333332   345788888777

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=87.52  E-value=0.056  Score=34.60  Aligned_cols=30  Identities=13%  Similarity=-0.045  Sum_probs=22.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-|  +|.   +++++++++|.+|+.+.
T Consensus       150 ~~nptG~~~~--~i~---~~~~~~li~D~a~~~~~  179 (360)
T 1w23_A          150 NNTIYGTQYQ--NFP---EINHAPLIADMSSDILS  179 (360)
T ss_dssp             EETTTTEECS--SCC---CCCSSCEEEECTTTTTS
T ss_pred             CCCCcceecc--ccc---ccCCceEEEechhhcCC
Confidence            4678999855  333   37999999999998654

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=87.09  E-value=0.47  Score=35.45  Aligned_cols=26  Identities=12%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHcCcEEEecccccceee
Q psy14030         14 IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus        14 i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +++|+++|++||+++.+|=++.||..
T Consensus       618 L~~l~~lc~~~gilLI~DEV~tGfGR  643 (831)
T 4a0g_A          618 QRVLVNECRNRKIPVIFDEVFTGFWR  643 (831)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTTTTTT
T ss_pred             HHHHHHHHHHcCCeEEEEcCcccccc
Confidence            89999999999999999998887644

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=86.03  E-value=0.61  Score=32.55  Aligned_cols=30  Identities=13%  Similarity=0.196  Sum_probs=26.0

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccc
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      +.|.+-|    +++|+++|++||+.+.+|=++.|
T Consensus       232 ~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG  265 (454)
T 4ao9_A          232 ASGCIPGQPDFLQALRESATQVGALLVFDEVMTS  265 (454)
T ss_dssp             TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             CCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC
Confidence            4567777    99999999999999999988865

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=85.55  E-value=0.16  Score=34.26  Aligned_cols=29  Identities=21%  Similarity=-0.085  Sum_probs=20.4

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .|.+|++.|.     +++ .++++|||++|+....
T Consensus       150 e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~  178 (361)
T 3m5u_A          150 NTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR  178 (361)
T ss_dssp             ETTTTEECSS-----CCC-CSSCEEEECGGGTTSS
T ss_pred             CCCcceeCCc-----ccc-cCCEEEEEcccccCCC
Confidence            3556998552     333 4999999999986554

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=85.07  E-value=0.4  Score=32.89  Aligned_cols=37  Identities=19%  Similarity=0.101  Sum_probs=29.4

Q ss_pred             ccccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..+|.||..-   .+++|.++++++++++-.|-+|.++..
T Consensus       198 ~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~  237 (420)
T 4h51_A          198 CAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYAS  237 (420)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhcc
Confidence            3467888764   466777788899999999999988754

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=84.47  E-value=0.72  Score=31.19  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=27.6

Q ss_pred             ccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          5 TTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         5 tt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +|.||.+=+   +++|.++|+++++++-+|-+|..+.
T Consensus       184 ~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~  220 (405)
T 3k7y_A          184 YNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFG  220 (405)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCccccc
Confidence            688888765   5566677889999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	63
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	3e-11
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	5e-09
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-07
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-05

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.1 bits (129), Expect = 3e-11
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 4   GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
           GTT   +FD +  +  IC E D+WLHVDAA+ G A +  + RHLL G+E 
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF 293

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (112), Expect = 5e-09
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 3   PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIER 53
                    D +  +A ICA YD+   V+ A+G  +            + R
Sbjct: 202 TACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR 252

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 42.6 bits (99), Expect = 3e-07
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 3   PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRH 46
                    D I  IA IC  YD+   ++ A+        +   
Sbjct: 219 LTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 262

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 4   GTTVLGAFDPIPAIADICAE------YDMWLHVDAAWGGGAL-VSRKHRHLLTGIERPQN 56
           G T  G ++    + D   +       D+ +H+DAA GG               + R ++
Sbjct: 208 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKS 267

Query: 57  RSEDTP 62
            S    
Sbjct: 268 ISASGH 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.87
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.71
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.36
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.15
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	98.43
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.4
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	98.12
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	98.02
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	97.95
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	97.95
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	97.93
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	97.82
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	97.68
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	97.37
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	97.05
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	96.74
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	96.74
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	96.66
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	96.58
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	96.48
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	96.25
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	96.25
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	96.06
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	96.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	95.85
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	95.65
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	95.57
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	95.52
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	94.99
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	94.85
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	94.78
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	94.75
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	94.6
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	94.57
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	94.53
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	94.28
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	93.96
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	93.92
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	93.88
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	93.78
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	93.52
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	93.42
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	93.09
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	92.97
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	92.8
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	92.66
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	92.49
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	92.26
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	92.21
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	92.12
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	90.97
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	90.69
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	90.08
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	89.97
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	89.95
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	89.58
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	89.2
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	89.16
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	89.05
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	89.02
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	88.72
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	88.12
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	87.99
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	87.9
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	87.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	86.12
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	83.91
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	83.18
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	83.14
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	82.94
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	82.48
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	82.42
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	81.11
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	81.05

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=6.7e-24  Score=147.60  Aligned_cols=62  Identities=39%  Similarity=0.661  Sum_probs=60.6

Q ss_pred             CCccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||++|++||+++|+++|+++++|+||||||||+++++++++++++++++||||++|+|
T Consensus       241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~H  302 (476)
T d1js3a_         241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPH  302 (476)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHH
T ss_pred             ecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCc
Confidence            58999999999999999999999999999999999999999999999999999999999998

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.5e-18  Score=119.50  Aligned_cols=62  Identities=21%  Similarity=0.142  Sum_probs=54.9

Q ss_pred             CCccccceeeeeCHHHHHHHHH------HcCcEEEecccccceee-ecccchhhhCCCCCCceeEecCC
Q psy14030          1 MFPGTTVLGAFDPIPAIADICA------EYDMWLHVDAAWGGGAL-VSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         1 at~Gtt~tG~id~i~~i~~i~~------~~~~~~HvDaa~gg~~~-~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|+|||+||++||+++|.++++      ++++|+||||||||+.+ ++++.++...+++++|||++|+|
T Consensus       205 ~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~H  273 (450)
T d1pmma_         205 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGH  273 (450)
T ss_dssp             CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETT
T ss_pred             eeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChh
Confidence            5899999999999999998865      46999999999999877 66666667779999999999999

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=3.2e-14  Score=94.91  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.|++.+|.+||+++|+++|++|++|+|+|+|++++..++.+......++..+|++++|+|
T Consensus       201 ~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~h  261 (445)
T d3bc8a1         201 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLD  261 (445)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             eCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCc
Confidence            5789999999999999999999999999999999988877766555556788999999987

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.15  E-value=3.2e-12  Score=85.12  Aligned_cols=60  Identities=17%  Similarity=0.030  Sum_probs=51.1

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +.+++..|.++|+++|+++|+++++|+|+|+|+|++..+++...... +...+|+++.|+|
T Consensus       218 ~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~-~~~~~D~~~~s~h  277 (434)
T d2z67a1         218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSD  277 (434)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH-HTSCCSEEEEEHH
T ss_pred             ccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc-ccCCcceEEEcCc
Confidence            56788999999999999999999999999999998887776655433 4557899999987

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.43  E-value=3.8e-08  Score=62.62  Aligned_cols=35  Identities=31%  Similarity=0.535  Sum_probs=31.9

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++++|.++|+++|.++|+++++++|+|++|+...
T Consensus       149 ~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~  183 (364)
T d2e7ja1         149 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR  183 (364)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT
T ss_pred             CCCCCceeecchhheeccccccchhhccccchhhh
Confidence            56889999999999999999999999999997543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.40  E-value=1.1e-07  Score=63.27  Aligned_cols=59  Identities=12%  Similarity=0.001  Sum_probs=47.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhC--C-----CCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLT--G-----IERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~--~-----i~~adSi~~d~h   62 (63)
                      .+|+.|.+.|+++|+++|+++++++|+|+||+....+.+..+....  +     ...+|.++.++|
T Consensus       182 ~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~H  247 (462)
T d1c4ka2         182 LGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVH  247 (462)
T ss_dssp             SBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHH
T ss_pred             eeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecC
Confidence            4678999999999999999999999999999988887776554321  1     224588888876

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=8.1e-07  Score=58.51  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=34.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      ..++++|.+.|+++|.++|+++|+++++|++|+.....
T Consensus       171 ~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~  208 (405)
T d1jf9a_         171 HVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP  208 (405)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC
T ss_pred             cCCCcccccCchHHhhhHHHHcCCeeecccceeccccc
Confidence            46889999999999999999999999999999876653

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.02  E-value=1.7e-06  Score=56.93  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .-++++|.++|+++|.++|+++++++|+|++|+.....
T Consensus       171 ~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~  208 (408)
T d1t3ia_         171 HISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP  208 (408)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC
T ss_pred             cccccccccCcHHHHhhhhhccCceeeeccceeccccc
Confidence            45789999999999999999999999999999876554

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.3e-06  Score=54.95  Aligned_cols=37  Identities=24%  Similarity=0.531  Sum_probs=33.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -.+|++|.++|+++|.++|+++|+++|+|++|+....
T Consensus       152 ~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~  188 (388)
T d1h0ca_         152 HGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGT  188 (388)
T ss_dssp             SEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTS
T ss_pred             eeeeccccccCHHHHHHHhhcccccceeccccccccc
Confidence            3579999999999999999999999999999986444

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.95  E-value=4.8e-06  Score=52.74  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=33.8

Q ss_pred             CccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          2 FPGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         2 t~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +..+|+||.+.|+++|.++|+++|+.+++|++|+....
T Consensus       134 ~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~  171 (361)
T d1m32a_         134 VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI  171 (361)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             EeeecccccchhhhhhhhhhcccceeeEeecccccCcc
Confidence            34678999999999999999999999999999986544

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=97.93  E-value=6.5e-06  Score=52.79  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=39.2

Q ss_pred             ccccceeeeeCHHHHHHHHHH----cCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAE----YDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~----~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      ..+++||.+.|+++|.++|++    +++++|+|++++.......     +. --.+|.+.+++|
T Consensus       153 ~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~-----~~-~~~~D~~~~s~~  210 (381)
T d1elua_         153 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLD-----FS-RLEVDYYAFTGH  210 (381)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCC-----TT-TSCCSEEEEESS
T ss_pred             cccccccccchhhHHHHHHhhccccccccccccccccccccccc-----cc-cccccccccccc
Confidence            457899999999999999998    4799999999985433211     11 113566666665

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.82  E-value=8.3e-06  Score=52.43  Aligned_cols=37  Identities=19%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .-+++||.++|+++|+++|+++++.+|+|++|+....
T Consensus       172 ~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~  208 (404)
T d1qz9a_         172 HVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV  208 (404)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             cccccccceecHHHHhccccccccceeEEeecccccc
Confidence            4689999999999999999999999999999976544

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=3.1e-05  Score=49.87  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=32.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..++.||.+.|+++|+++|+++++++++|++|+....
T Consensus       151 ~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~  187 (391)
T d1p3wa_         151 HVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL  187 (391)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB
T ss_pred             CCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCc
Confidence            4578999999999999999999999999999975543

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=97.37  E-value=2.5e-05  Score=49.46  Aligned_cols=35  Identities=29%  Similarity=0.531  Sum_probs=31.6

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      -+|++|.++|+++|.++++++|..+++|++++...
T Consensus       152 ~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~  186 (377)
T d1vjoa_         152 AETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG  186 (377)
T ss_dssp             EETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT
T ss_pred             eeccceeeechhhhhhhhhhccceEEEecchhhhh
Confidence            47899999999999999999999999999996433

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=9.1e-05  Score=49.06  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             eeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .++++++|+++|++||+++|+|+|+....
T Consensus       202 ~~~~l~~i~~ia~~~g~~l~~D~a~~~~~  230 (467)
T d2v1pa1         202 SLANLKAMYSIAKKYDIPVVMDSARFAEN  230 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhhcc
Confidence            45789999999999999999999986443

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=96.74  E-value=0.00026  Score=44.98  Aligned_cols=37  Identities=27%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .-+|++|.+.|+++|.+++++++..+++|+++.....
T Consensus       150 ~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~  186 (388)
T d2ch1a1         150 HGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV  186 (388)
T ss_dssp             SEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB
T ss_pred             ecccccccccchhhhcchhccccceeeeeeeeccccc
Confidence            3578999999999999999999999999999876544

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00098  Score=42.26  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHc--CcEEEecccccceeee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGALV   40 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~~   40 (63)
                      ...++||.+.|++++.++++++  ++.+|+|++|+.....
T Consensus       143 ~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~p  182 (382)
T d2bkwa1         143 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE  182 (382)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC
T ss_pred             eccccccccccchhhhhhccccccceeeeeeccccccccc
Confidence            4578999999999999999876  5999999999865543

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00056  Score=44.80  Aligned_cols=35  Identities=29%  Similarity=0.547  Sum_probs=31.3

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .++.|.+-|+++|.+++++|+++++||-|++.+.+
T Consensus       177 ~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~  211 (383)
T d1bs0a_         177 FSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVI  211 (383)
T ss_dssp             CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred             CCCCCcccchhHHHHHHHhcCcEEEeecceeeeec
Confidence            35679999999999999999999999999987655

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.58  E-value=0.00036  Score=45.05  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=29.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      |..++.++++++|+++|+++++|+.+|.+|+...+
T Consensus       144 n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~  178 (366)
T d2aeua1         144 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVR  178 (366)
T ss_dssp             TSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred             CCCcCCHHHHHHHHHHhccCcEEEEEecCcccccc
Confidence            44567789999999999999999999999975443

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=96.48  E-value=0.00052  Score=46.08  Aligned_cols=28  Identities=14%  Similarity=0.276  Sum_probs=24.3

Q ss_pred             eeeCHHHHHHHHHHcCcEEEecccccce
Q psy14030         10 AFDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus        10 ~id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .++++++|.++|+++|+.+|+|+|+...
T Consensus       193 ~~~~l~~i~~~a~~~~~~~~~D~a~~~~  220 (456)
T d1c7ga_         193 SMANMRAVHEMASTYGIKIFYDATRCVE  220 (456)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cHHHHHHHHHHHHHcCCEEEEEcchhhc
Confidence            4678899999999999999999997543

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.0017  Score=41.12  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++++|.+++.+..
T Consensus       161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~  199 (368)
T d1v2da_         161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY  199 (368)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred             CCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcc
Confidence            4688898876   77788888999999999999886544

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=96.25  E-value=0.00067  Score=40.85  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             eeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+.++++.++.++|+++++++|+|.+++++..
T Consensus       151 ~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~  182 (345)
T d1v72a1         151 IYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL  182 (345)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred             cccchhhhhHHHHHHhcCceeeecccccceec
Confidence            44577889999999999999999999987554

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=96.06  E-value=0.001  Score=43.64  Aligned_cols=27  Identities=11%  Similarity=0.209  Sum_probs=23.5

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccce
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .+++++|+++|+++|+++|+|.|+...
T Consensus       202 ~~~l~~i~~~~~~~g~~l~~D~~~~~~  228 (465)
T d1ax4a_         202 MSNLKEVYEIAKQHGIFVVMDSARFCE  228 (465)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcchhh
Confidence            467899999999999999999998643

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0021  Score=42.28  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.+-|++++.++|++|++++.+|-+++++.+
T Consensus       188 s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~  221 (401)
T d1fc4a_         188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV  221 (401)
T ss_dssp             TTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred             CCCCchhhhhHHHHHHhhcCcEEEehhhhccccc
Confidence            3568889999999999999999999999987665

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.0054  Score=38.69  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=31.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHc--CcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~   39 (63)
                      .-++.||.++|++++.++++++  +..+.+|++|.....
T Consensus       147 ~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~  185 (376)
T d1eg5a_         147 AANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI  185 (376)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred             CCccccceeeeehhhhhhhhhcccCceeEEEeeeccccc
Confidence            4578999999999999998765  899999999976554

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0018  Score=39.01  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=23.4

Q ss_pred             eeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030         11 FDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus        11 id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++++.+|+++|+++++++|+|.+++++..
T Consensus       148 ~~~l~~i~~~~~~~g~~~~~D~a~~~~~~  176 (343)
T d1m6sa_         148 LENIKEICTIAKEHGINVHIDGARIFNAS  176 (343)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEETTHHHHH
T ss_pred             HHHHHHHHHHHHhcCeEEEeccccccccc
Confidence            45566777777899999999999987654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.57  E-value=0.0021  Score=40.51  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      +.+...|...|+++|.++|+++++++-.|+||+.+.
T Consensus       124 i~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~  159 (376)
T d1mdoa_         124 IPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGT  159 (376)
T ss_dssp             CCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC
T ss_pred             EEeCCCCCccchhHHHHHHHhcCceEEeccchhccC
Confidence            345677888999999999999999999999987543

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=95.52  E-value=0.00015  Score=45.59  Aligned_cols=37  Identities=5%  Similarity=-0.361  Sum_probs=32.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .-+|.||++.|+.+|.++|+++++.+.+|++|+....
T Consensus       144 ~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~  180 (360)
T d1w23a_         144 YLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR  180 (360)
T ss_dssp             EEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSS
T ss_pred             eeEecCCccccceeeeeccccceeeEEeecccccccc
Confidence            3467899999999999999999999999999886554

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=94.99  E-value=0.0079  Score=38.61  Aligned_cols=36  Identities=22%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             ccccceeeeeCHHHHHHHHHHcC--cEEEeccccccee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYD--MWLHVDAAWGGGA   38 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~--~~~HvDaa~gg~~   38 (63)
                      -..|.+|.+.|+++|.+++++++  ..+++|++++...
T Consensus       128 h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~  165 (348)
T d1iuga_         128 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV  165 (348)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT
T ss_pred             ecchhhhhhccHHHHHHHHHhhhccceeechhhhcccc
Confidence            35688999999999999999874  7899999876543

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.011  Score=37.00  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=29.0

Q ss_pred             ccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          5 TTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         5 tt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +|.||.+-+   +++|.++|+++++++.+|-+|..+..
T Consensus       143 ~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~  180 (361)
T d1d2fa_         143 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW  180 (361)
T ss_dssp             CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             ccccccccchhhhhhhhhhhhhhheeeeeccccccccc
Confidence            677886655   77888899999999999999987653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=94.78  E-value=0.0066  Score=40.48  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=32.3

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      -+|.+.-+.||++|+++|+++|+.+.||.+|+..++
T Consensus       153 p~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~  188 (392)
T d1gc0a_         153 PANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL  188 (392)
T ss_dssp             SCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH
T ss_pred             cccceeeecchHHHHHHHHhcCCEEEEecCccCccc
Confidence            367888999999999999999999999999987655

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.75  E-value=0.0086  Score=39.67  Aligned_cols=37  Identities=16%  Similarity=0.111  Sum_probs=32.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      -+|.+.-+.||++|+++|+++|+++-||.+++..+..
T Consensus       142 psNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~  178 (380)
T d1ibja_         142 PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS  178 (380)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC
T ss_pred             ccccccccccHHHHHHHHHHcCCeEEeeccccccccc
Confidence            3677888999999999999999999999999886653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.60  E-value=0.011  Score=39.21  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=30.5

Q ss_pred             cceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          6 TVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         6 t~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ++.|.+-|+++|.+++++|++++-||-|++...+
T Consensus       188 SmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~  221 (396)
T d2bwna1         188 SMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMY  221 (396)
T ss_dssp             TTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             cCcccccccHhHHHHhhhhcceeeeccceeeeee
Confidence            5679999999999999999999999999986554

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.57  E-value=0.0096  Score=37.68  Aligned_cols=37  Identities=32%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +-+...|...+++++.++|+++++.+-.|+||+.+.-
T Consensus       116 i~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~  152 (374)
T d1o69a_         116 ILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSF  152 (374)
T ss_dssp             EEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred             cccccccchhhhHHHHHHhhccCcchhhhhhhhhcce
Confidence            3456678899999999999999999999999976543

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=94.53  E-value=0.00046  Score=43.63  Aligned_cols=37  Identities=5%  Similarity=-0.349  Sum_probs=32.5

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      -+++||.+.|+.+|.++++++++.++||++++.....
T Consensus       145 v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~  181 (361)
T d2c0ra1         145 LHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRP  181 (361)
T ss_dssp             EEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSC
T ss_pred             EEEecccceecceEEEeeccCCceEEEEeeccccccc
Confidence            4678999999999999999999999999998775543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.021  Score=38.55  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|.+...-.-|+++++++|++.|.++++|+++-........++.   -++.+|-++.+.|
T Consensus       171 ~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s---P~~~aDvvt~tTh  227 (416)
T d1dfoa_         171 GGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN---PVPHAHVVTTTTH  227 (416)
T ss_dssp             EECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC---CTTTSSEEEEESS
T ss_pred             ecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCC---cccccceeeeehh
Confidence            45555566678999999999999999999998655554444433   2455788888877

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=93.96  E-value=0.019  Score=38.30  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=32.1

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      +|.+.-+-||++|+++++++|+.+-||.+|+..+++
T Consensus       158 ~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~  193 (397)
T d1y4ia1         158 ANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ  193 (397)
T ss_dssp             CTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred             cccceeecccHHHHHHhhcCCceEEecCcccCcccC
Confidence            567888999999999999999999999999876553

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.92  E-value=0.018  Score=38.30  Aligned_cols=37  Identities=14%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      .+|.+.-+-||++|+++|+++|+.+-||.+++..+++
T Consensus       162 psNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~  198 (398)
T d1qgna_         162 PTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ  198 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred             ccccccccchHHHHHHHHhhcCCEEEecceeeccccC
Confidence            3567788999999999999999999999999875553

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=93.88  E-value=0.015  Score=36.89  Aligned_cols=37  Identities=11%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +.+...|..-++++|.++|+++++++-.|+||+.+..
T Consensus       125 i~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~  161 (371)
T d2fnua1         125 VSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSE  161 (371)
T ss_dssp             EEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE
T ss_pred             ccccccccccccccccccccccchhhccchhhccCce
Confidence            4566778899999999999999999999999876543

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.78  E-value=0.027  Score=37.87  Aligned_cols=56  Identities=16%  Similarity=0.170  Sum_probs=41.4

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+..--.-|+++++++|++.|.++.+|+++-........++..   ++.+|-++.+.|
T Consensus       170 G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P---~~~aDvvt~tTh  225 (405)
T d1kl1a_         170 AASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---VPYAHFVTTTTH  225 (405)
T ss_dssp             CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---TTTCSEEEEESS
T ss_pred             cccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCCh---hhhhhheecccc
Confidence            44444445679999999999999999999986555544444432   467899998877

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.52  E-value=0.019  Score=36.15  Aligned_cols=36  Identities=22%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+..
T Consensus       168 P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~  206 (388)
T d1gdea_         168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY  206 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhh
Confidence            4678888754   67777888999999999999987654

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=93.42  E-value=0.027  Score=36.43  Aligned_cols=36  Identities=11%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++.+|.+|+.+..
T Consensus       197 P~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~  235 (428)
T d1iaya_         197 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF  235 (428)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCC
T ss_pred             CCCcccccccccccchhheeeccCcEEEEeccccccccc
Confidence            3667787665   67788889999999999999986543

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.032  Score=36.89  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=31.7

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      +|.+.-+-||++|+++++++|+.+-||-+|+..+++
T Consensus       145 sNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~  180 (384)
T d1cs1a_         145 SNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ  180 (384)
T ss_dssp             CTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred             ccccceeccHHHHhhhhhhcCcEEEEeccccCcccc
Confidence            567888999999999999999999999999876553

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=92.97  E-value=0.044  Score=37.38  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=40.7

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      |.+..=-.-|+++++++|++.|.++.+|+++-........++..   ++.+|-++.+.|
T Consensus       183 G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP---~~~aDvvt~tTH  238 (463)
T d2a7va1         183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTH  238 (463)
T ss_dssp             CCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESS
T ss_pred             cccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcCh---hhhhhhhhchhh
Confidence            44444446689999999999999999999986555544444433   356788888877

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=92.80  E-value=0.046  Score=36.57  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.1

Q ss_pred             cccceeeeeCHHHHHHHHHHcCcEEEecccccc
Q psy14030          4 GTTVLGAFDPIPAIADICAEYDMWLHVDAAWGG   36 (63)
Q Consensus         4 Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg   36 (63)
                      .+|.+.-+.||++|+++|+++|+.+-||-+++.
T Consensus       153 psNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~  185 (421)
T d2ctza1         153 IGNPALNIPDLEALAQAAREKGVALIVDNTFGM  185 (421)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred             CCcceeEecchHHHHHHHHhcCCceEecccccc
Confidence            367788899999999999999999999999984

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.66  E-value=0.042  Score=37.52  Aligned_cols=57  Identities=19%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeEecCC
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRSEDTP   62 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~~d~h   62 (63)
                      +|.+..=-.-|+++++++|++.|.++.+|+++-........++..+   +.+|-++.+.|
T Consensus       186 ~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl---~~aDvvt~tTH  242 (470)
T d1rv3a_         186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCHVVTTTTH  242 (470)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCSEEEEESS
T ss_pred             echhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh---heeeeeeeehh
Confidence            3444444456899999999999999999999865555444444333   56788888877

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=92.49  E-value=0.022  Score=36.56  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             ccccceeeeeCHHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDPIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      +.+...|...+++++.++|+++++++..|+||+.+..
T Consensus       127 ~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~  163 (384)
T d1b9ha_         127 MPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGAR  163 (384)
T ss_dssp             CCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred             ccccccccccccccchhhhhhhhhhhhhhhceecccc
Confidence            4567788899999999999999999999999976554

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=92.26  E-value=0.035  Score=35.30  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=28.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++-+|-+|..+..
T Consensus       173 P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~  211 (394)
T d1c7na_         173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM  211 (394)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBC
T ss_pred             cccccceeccHHHhhhhhccccccceeEecccccccccc
Confidence            4678888766   55577778899999999999987653

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=92.21  E-value=0.037  Score=34.98  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-.|-+|..+..
T Consensus       173 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~  211 (382)
T d1b5pa_         173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY  211 (382)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS
T ss_pred             CCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceec
Confidence            3677888755   66677788899999999999997654

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=92.12  E-value=0.038  Score=34.99  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|+++|+++++++.+|-+|+.+..
T Consensus       180 p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~  218 (403)
T d1wsta1         180 FQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRY  218 (403)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             cCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheec
Confidence            4577786555   55677788899999999999986544

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=90.97  E-value=0.08  Score=33.64  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++..|-+|..+..
T Consensus       184 p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~  222 (401)
T d7aata_         184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS  222 (401)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred             CCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhc
Confidence            4677887654   66777788999999999999988765

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.052  Score=34.43  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=29.3

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-.|-+|..+..
T Consensus       181 P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~  219 (396)
T d2q7wa1         181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFAR  219 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSS
T ss_pred             CcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccccccc
Confidence            5688888655   55777788999999999999988764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=90.08  E-value=0.099  Score=33.30  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=30.2

Q ss_pred             ccccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..+|.||.+=+   +++|+++|+++++++-.|-+|..+..
T Consensus       191 ~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~  230 (412)
T d1ajsa_         191 CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS  230 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred             CCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhc
Confidence            35788888766   77778888999999999999987654

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.21  Score=32.33  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHcCcEEEecccccceeeecccchhhhCCCCCCceeE
Q psy14030         14 IPAIADICAEYDMWLHVDAAWGGGALVSRKHRHLLTGIERPQNRS   58 (63)
Q Consensus        14 i~~i~~i~~~~~~~~HvDaa~gg~~~~~~~~~~~~~~i~~adSi~   58 (63)
                      +++|+++|+++++.+.+|=++.||...-.-+.....+++ .|=++
T Consensus       211 l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~-PDi~~  254 (404)
T d2byla1         211 LMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR-PDIVL  254 (404)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC-CSEEE
T ss_pred             HHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCC-CCEEE
Confidence            899999999999999999999987664333333333443 35444

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=89.95  E-value=0.12  Score=33.21  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+.
T Consensus       198 P~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~  235 (431)
T d1m7ya_         198 PSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA  235 (431)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred             ccccccccccccccccccccccccCcceeecccccccc
Confidence            3566776655   6777778889999999999998754

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=89.58  E-value=0.14  Score=32.43  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|+.+..
T Consensus       172 P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~  210 (388)
T d1j32a_         172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY  210 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccc
Confidence            4688888766   55666677899999999999976554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=89.20  E-value=0.053  Score=31.47  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=25.7

Q ss_pred             cceeee---eCHHHHHHHHHHcCcEEEecccccceeee
Q psy14030          6 TVLGAF---DPIPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         6 t~tG~i---d~i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      ++.|.+   +++.++..++++++.++|+|.++++....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~  178 (340)
T d1svva_         141 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALS  178 (340)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHT
T ss_pred             ccccccccHHHhhhhhcccccccceeeeeccceeeeec
Confidence            344444   45666778888999999999999765553

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.16  E-value=0.085  Score=33.51  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-+|-+|..+..
T Consensus       183 p~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~  221 (412)
T d1bw0a_         183 PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVF  221 (412)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBC
T ss_pred             ccccccccchhhhccccccccccCCeeeechhhHHHhcc
Confidence            4677787654   56666777799999999999987654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.05  E-value=0.15  Score=31.98  Aligned_cols=36  Identities=22%  Similarity=0.084  Sum_probs=29.6

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+=+   +++|.++|+++++++-.|-+|..+..
T Consensus       178 p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~  216 (394)
T d2ay1a_         178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD  216 (394)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcc
Confidence            5677887655   67777888999999999999998764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=89.02  E-value=0.3  Score=31.42  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=28.6

Q ss_pred             ceeeeeC----HHHHHHHHHHcCcEEEecccccceeee
Q psy14030          7 VLGAFDP----IPAIADICAEYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         7 ~tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~~   40 (63)
                      +.|.+-|    +++|+++|+++|+.+=+|=++.||...
T Consensus       198 ~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRt  235 (404)
T d1z7da1         198 EAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT  235 (404)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcc
Confidence            3466666    899999999999999999999887653

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=88.72  E-value=0.17  Score=32.91  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccce
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGG   37 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~   37 (63)
                      .|.+-|    +++|.++|++|++.+-+|=++.|+
T Consensus       212 ~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~  245 (427)
T d2gsaa_         212 SGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF  245 (427)
T ss_dssp             SSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred             CCCccCCHHHHHHHHHHHHHhceeeeeccccccc
Confidence            466667    999999999999999999999886

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=88.12  E-value=0.32  Score=30.03  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEeccccccee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGA   38 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~   38 (63)
                      .+|.||.+-+   +.+|.++|+++++++-+|-+|..+.
T Consensus       153 P~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~  190 (355)
T d1lc5a_         153 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI  190 (355)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred             ccCcccccchhhhhhhhhhhccccccccccccceeeee
Confidence            4788888766   5666677789999999999997654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.13  Score=32.82  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=28.5

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   .+++|.++|+++++++-.|.+|..+..
T Consensus       180 p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~  218 (418)
T d1w7la_         180 PNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY  218 (418)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             cCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhc
Confidence            467888765   466777788899999999999987653

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=87.90  E-value=0.2  Score=31.96  Aligned_cols=37  Identities=22%  Similarity=0.073  Sum_probs=30.3

Q ss_pred             ccccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          3 PGTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         3 ~Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      ..+|.||.+=+   +++|.++|+++++++-.|-+|..+..
T Consensus       184 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~  223 (412)
T d1yaaa_         184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFAT  223 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSS
T ss_pred             CCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeeccc
Confidence            35788888765   77778888999999999999987664

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=87.00  E-value=0.28  Score=31.08  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             cccceeeee---CHHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFD---PIPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id---~i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-   .+++|.++|+++++++-+|-+|..+..
T Consensus       192 p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~  230 (420)
T d1vp4a_         192 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY  230 (420)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred             CCCccchhhhhhhhhhhhhhhhcccccccccchhhhccc
Confidence            357788764   467788888999999999999986543

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=86.12  E-value=0.34  Score=30.21  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+=+   +++|.++|+++++++-.|-+|..+..
T Consensus       168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~  206 (389)
T d2gb3a1         168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF  206 (389)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             CCccccccchHHHHHHHHhhcccCCEEEEEecccccccc
Confidence            3677886544   77788888999999999999987554

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=83.91  E-value=0.43  Score=30.24  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=28.0

Q ss_pred             cccceeeeeCHH---HHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPIP---AIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i~---~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+.+   +|+++|+++++++-.|.+|..+..
T Consensus       180 p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~  218 (418)
T d2r5ea1         180 PHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF  218 (418)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             cCccccccccHHHHHHHhhhhhcCCeeeecccchhhhcc
Confidence            577888876654   566678899999999999976543

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.18  E-value=0.29  Score=32.18  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             ccceeeeeCHHHHHHHHH----HcCcEEEecccccceeee
Q psy14030          5 TTVLGAFDPIPAIADICA----EYDMWLHVDAAWGGGALV   40 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~----~~~~~~HvDaa~gg~~~~   40 (63)
                      +|.+.-+-||++|+++++    ++++.+-||-+++..+.+
T Consensus       148 sNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~  187 (393)
T d1n8pa_         148 TNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS  187 (393)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred             chhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC
Confidence            567788999999999999    678999999999876653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.14  E-value=0.42  Score=30.18  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=27.8

Q ss_pred             cccceeeeeCH---HHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDPI---PAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~i---~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+.   ++|.++|+++++++-.|-+|..+..
T Consensus       175 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~  213 (395)
T d1xi9a_         175 PNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY  213 (395)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS
T ss_pred             CCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccc
Confidence            36788887665   5666677899999999999987543

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=82.94  E-value=0.26  Score=30.67  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEeccccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAWG   35 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~g   35 (63)
                      ++..|+.++++++++.|+++|+.|-+|.++-
T Consensus        68 d~~~Gt~~df~~LV~~aH~~GI~VilDvV~N   98 (378)
T d1jaea2          68 NTRSGDESAFTDMTRRCNDAGVRIYVDAVIN   98 (378)
T ss_dssp             EETTEEHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHhcCceeeeeeccc
Confidence            3557899999999999999999999999753

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.44  Score=29.96  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             cccceeeeeC---HHHHHHHHHHcCcEEEecccccceee
Q psy14030          4 GTTVLGAFDP---IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         4 Gtt~tG~id~---i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .+|.||.+-+   +++|.++|+++++++-.|-+|..+..
T Consensus       182 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~  220 (397)
T d3tata_         182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGA  220 (397)
T ss_dssp             SCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSS
T ss_pred             CCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhcc
Confidence            4677887655   66777788899999999999988654

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.42  E-value=0.29  Score=30.68  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             ccceeeeeCHHHHHHHHHHcCcEEEecccc
Q psy14030          5 TTVLGAFDPIPAIADICAEYDMWLHVDAAW   34 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~~~~~HvDaa~   34 (63)
                      ++..|+.++++++++.|+++|+.|-+|.++
T Consensus        70 ~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~   99 (403)
T d1hx0a2          70 CTRSGNENEFRDMVTRCNNVGVRIYVDAVI   99 (403)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCEEEEEEec
Confidence            456789999999999999999999999964

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=81.11  E-value=0.55  Score=30.68  Aligned_cols=36  Identities=22%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             ccceeeeeCHHHHHHHHHHc--CcEEEecccccceeee
Q psy14030          5 TTVLGAFDPIPAIADICAEY--DMWLHVDAAWGGGALV   40 (63)
Q Consensus         5 tt~tG~id~i~~i~~i~~~~--~~~~HvDaa~gg~~~~   40 (63)
                      +|.+.-+-|+++++++++++  |+.+-||-+++..+.+
T Consensus       153 sNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~  190 (391)
T d1cl1a_         153 GSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF  190 (391)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred             CcccccccccHHHHHHHHhccCCcEEEEeccccchhhh
Confidence            56677788999999999875  9999999999886653

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=81.05  E-value=0.84  Score=29.18  Aligned_cols=32  Identities=22%  Similarity=0.137  Sum_probs=27.3

Q ss_pred             eeeeeC----HHHHHHHHHHcCcEEEecccccceee
Q psy14030          8 LGAFDP----IPAIADICAEYDMWLHVDAAWGGGAL   39 (63)
Q Consensus         8 tG~id~----i~~i~~i~~~~~~~~HvDaa~gg~~~   39 (63)
                      .|.+-+    +++|+++|++||+.+-+|=++.||..
T Consensus       190 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR  225 (387)
T d1vefa1         190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR  225 (387)
T ss_dssp             TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             CCCccCCHHHHHHHHHHHHHcCceEEecccccccCc
Confidence            355555    99999999999999999999998754