Psyllid ID: psy14099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK
Secondary Structure (PSIPRED)
ccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEcccccEEEEEEcccccccHHcHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccHEEHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccHHcHEEccccccccccHHHcccccEcccccEEEcccccEEEEEccccccccccEHHHHHHHHHHcHEEEEEHccccccc
Coil and Loop (DISEMBL)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNtvdmfptplhhvVFRQTLFLIGITGITSAYTVLYVNtvdmfptplrQSLLAFCSMIGRIGQVIAPQVFLLLGFvlgdsrclipecehaantsyltpwlnhavpykdgypqncfryghigegngcnptsfnkshvikcnaWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGlgallgspfcafisdk
Flexible Loop (DISEMBL)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLgallgspfcafisdk
Low Complexity Region (SEG)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK
Disordered region (IsUnstruct)
***IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFI***
Disordered Region (DISOPRED)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK
Disordered Region (DISEMBL)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK
Disordered Region (DISPRO)
*SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISD*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9WTN6	564	Solute carrier family 22	yes	N/A	0.303	0.120	0.366	2e-05
A9CB25	551	Solute carrier family 22	N/A	N/A	0.285	0.116	0.384	4e-05
Q9Z306	553	Solute carrier family 22	no	N/A	0.241	0.097	0.436	8e-05
Q9R141	553	Solute carrier family 22	yes	N/A	0.241	0.097	0.418	0.0001
Q504N2	544	Solute carrier family 22	no	N/A	0.272	0.112	0.377	0.0001
Q8IZD6	547	Solute carrier family 22	yes	N/A	0.263	0.107	0.372	0.0002
Q6DFR1	534	Solute carrier family 22	yes	N/A	0.241	0.101	0.388	0.0002
Q9Z0E8	557	Solute carrier family 22	no	N/A	0.473	0.190	0.293	0.0002
Q91WU2	540	Solute carrier family 22	no	N/A	0.245	0.101	0.418	0.0002
Q9H015	551	Solute carrier family 22	no	N/A	0.285	0.116	0.369	0.0003

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 38  VDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQ 97
           V + P+ LH++    TL ++G  GITSAY+++YV T +++PT +R   +   S   R+G 
Sbjct: 420 VQLVPSDLHYL--STTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGS 477

Query: 98  VIAPQVFLLLG 108
           +++P  F+ LG
Sbjct: 478 ILSPY-FVYLG 487

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.
Mus musculus (taxid: 10090)

>sp|A9CB25|S22A4_PAPAN Solute carrier family 22 member 4 OS=Papio anubis GN=SLC22A4 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 44  PLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQV 103
           P+ +      L ++G  GITSA+++LYV T +++PT +R   +   SM  R+G +IAP  
Sbjct: 419 PVDYYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTMVRNMAVGVTSMASRVGSIIAPY- 477

Query: 104 FLLLG 108
           F+ LG
Sbjct: 478 FVYLG 482

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET).

Papio anubis (taxid: 9555)

>sp|Q9Z306|S22A4_MOUSE Solute carrier family 22 member 4 OS=Mus musculus GN=Slc22a4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 54  LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
           L ++G  GITSA+++LYV T +++PT +R   +   SM  R+G +IAP  F+ LG
Sbjct: 431 LVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGITSMASRVGSIIAPY-FVYLG 484

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78.

Mus musculus (taxid: 10090)

>sp|Q9R141|S22A4_RAT Solute carrier family 22 member 4 OS=Rattus norvegicus GN=Slc22a4 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 54  LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
           L ++G  G+TSA+++LYV T +++PT +R   +   SM  R+G +IAP  F+ LG
Sbjct: 431 LVMLGKFGVTSAFSMLYVFTAELYPTLVRNMAVGITSMASRVGSIIAPY-FVYLG 484

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78.

Rattus norvegicus (taxid: 10116)

>sp|Q504N2|S22AF_MOUSE Solute carrier family 22 member 15 OS=Mus musculus GN=Slc22a15 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 43  TPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQ 102
           T +  VV   +L L+G   I++A+ ++Y+ T +++PT +R   L  CSM  R+G +IAP 
Sbjct: 392 TGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGACSMFSRVGGIIAPF 451

Query: 103 V 103
           V
Sbjct: 452 V 452

Probably transports organic cations (By similarity). Appears not to be the agmatine transporter.

Mus musculus (taxid: 10090)

>sp|Q8IZD6|S22AF_HUMAN Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 43  TPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP 101
           T +  VV   +L L+G   I++A+ ++Y+ T +++PT +R   L  CSM  R+G +IAP
Sbjct: 392 TGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAP 450

Probably transports organic cations (By similarity). Appears not to be the agmatine transporter.

Homo sapiens (taxid: 9606)

>sp|Q6DFR1|S22AF_XENTR Solute carrier family 22 member 15 OS=Xenopus tropicalis GN=slc22a15 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query: 48  VVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP 101
           V+  QTL L+G   I++A+ ++Y+ + +++PT +R   +  CSM  RIG +IAP
Sbjct: 386 VLNSQTLSLLGKLNISAAFNIVYIYSSELYPTCVRNLGMGVCSMFSRIGGIIAP 439

Probably transports organic cations.

Xenopus tropicalis (taxid: 8364)

>sp|Q9Z0E8|S22A5_MOUSE Solute carrier family 22 member 5 OS=Mus musculus GN=Slc22a5 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 113 DSRCLIPECEHAANTSYLTPWLNHAVPY--KDGY--PQNCFRYGHIGEGN----GCNP-- 162
           + RCL+P   H  N S  + W NH++P   KDG   PQ C RY      N    G  P  
Sbjct: 47  EHRCLVP---HTVNLS--SAWRNHSIPLETKDGRQVPQKCRRYRLATIANFSELGLEPGR 101

Query: 163 -TSFNKSHVIKC-NAWVFQTDEV--NLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFC 218
                +     C + W +  D     ++ E++L C ++ WK  +  S+  +G L+GS   
Sbjct: 102 DVDLEQLEQESCLDGWEYDKDVFLSTIVTEWDLVCKDD-WKAPLTTSLFFVGVLMGSFIS 160

Query: 219 AFISDK 224
             +SD+
Sbjct: 161 GQLSDR 166

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Mus musculus (taxid: 10090)

>sp|Q91WU2|S22A7_MOUSE Solute carrier family 22 member 7 OS=Mus musculus GN=Slc22a7 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 54  LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
           L +IG     +A+T  Y+ T +++PT LRQ+ + F ++IGR+G  +AP V LL G
Sbjct: 432 LVVIGKAFSEAAFTTAYLFTSELYPTVLRQTGMGFTALIGRLGASLAPLVVLLDG 486

Mediates sodium-independent multispecific organic anion transport. High affinity transport of glutarate and prostaglandin E2 in a sodium-independent manner. Mediates also the uptake of alpha-ketoglutarate, p-aminohippuric acid, methotrexate, ochratoxin A, valproate, allopurinol and bumetanide.

Mus musculus (taxid: 10090)

>sp|Q9H015|S22A4_HUMAN Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 44  PLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQV 103
           P+ +      L ++G  GITSA+++LYV T +++PT +R   +   S   R+G +IAP  
Sbjct: 419 PVDYYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPY- 477

Query: 104 FLLLG 108
           F+ LG
Sbjct: 478 FVYLG 482

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
332375110	553	unknown [Dendroctonus ponderosae]	0.5	0.202	0.383	5e-21
332021678	569	Solute carrier family 22 member 4 [Acrom	0.482	0.189	0.419	4e-20
332021677	594	Solute carrier family 22 member 4 [Acrom	0.468	0.176	0.417	6e-20
332028174	430	Solute carrier family 22 member 21 [Acro	0.486	0.253	0.414	6e-20
157120965	548	organic cation transporter [Aedes aegypt	0.491	0.200	0.359	1e-19
118792135	565	AGAP012383-PA [Anopheles gambiae str. PE	0.491	0.194	0.372	4e-19
307184022	581	Solute carrier family 22 member 21 [Camp	0.473	0.182	0.412	9e-19
193627254	538	PREDICTED: solute carrier family 22 memb	0.486	0.202	0.369	7e-18
170064791	549	organic cation transporter [Culex quinqu	0.491	0.200	0.362	9e-18
170064793	546	organic cation transporter [Culex quinqu	0.486	0.199	0.350	2e-17

>gi|332375110|gb|AEE62696.1| unknown [Dendroctonus ponderosae]

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 65/112 (58%)

Query: 113 DSRCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNGCNPTSFNKSHVIK 172
           D RC IP+C+      YL PWLNHA+P+ + +P  C RY    + N C+   F+   + +
Sbjct: 55  DYRCKIPQCDQEGQAEYLQPWLNHAIPFINNHPDKCSRYASSDQFNNCSSAGFDIQVLER 114

Query: 173 CNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           C ++V+   E  +L E+ L+CD N WKLT+VG+++ +G   G      ISDK
Sbjct: 115 CGSFVYNGTEETILQEYGLQCDNNLWKLTMVGTVNNIGQFFGLIISGIISDK 166

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021678|gb|EGI62034.1| Solute carrier family 22 member 4 [Acromyrmex echinatior]

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 4/112 (3%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGE-GNGCNPTSFNKSHVIK- 172
           RC +PECEH+ NT++   WLN + P  DG    C RY    +  + C   SF  ++V + 
Sbjct: 69  RCFVPECEHSENTTFEPSWLNSSAPIIDGVISRCTRYVVQNDYSDTCTEASF--TNVTRD 126

Query: 173 CNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           C++W++ +DE  +LNE+N  CD NRWKLT+VG+I   G  +G  F  +ISD+
Sbjct: 127 CDSWIYDSDEYTILNEWNFTCDANRWKLTLVGTIQHTGQFVGLMFAGYISDR 178

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021677|gb|EGI62033.1| Solute carrier family 22 member 4 [Acromyrmex echinatior]

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 10/115 (8%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRY----GHIGEGNGCNPTSFNKSHV 170
           RC +PECEHA NT++  PWLN + P  +G   +C RY     H+G    C   SF  ++V
Sbjct: 94  RCSVPECEHAENTTFEPPWLNASAPKINGVISHCTRYVVQNDHLGT---CTEASF--TNV 148

Query: 171 IK-CNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
            + C++W++  +E  +LNE+   CD+N+WKLT+VGSI  +G ++G  F  +ISD+
Sbjct: 149 TRDCDSWIYDPNEYTILNEWGFTCDDNQWKLTLVGSIQNIGQIVGLIFAGYISDR 203

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028174|gb|EGI68225.1| Solute carrier family 22 member 21 [Acromyrmex echinatior]

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNG-CNPTSFNKSHVIKC 173
           RCL+PECEH+ NT++  PW+N + P  DG    C RY    +  G C  TSF       C
Sbjct: 69  RCLVPECEHSGNTTFEPPWVNASAPKIDGIISGCTRYTVRDDRPGICTETSFTNV-TCDC 127

Query: 174 NAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           ++W++  +E  +LNE++  CD NRWKLT+VG++  +G   G  F  +ISD+
Sbjct: 128 DSWIYDPEEHTILNEWDFTCDANRWKLTMVGTMQNIGQFAGLMFAGYISDR 178

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120965|ref|XP_001659801.1| organic cation transporter [Aedes aegypti] gi|108874726|gb|EAT38951.1| AAEL009206-PA [Aedes aegypti]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 71/114 (62%), Gaps = 4/114 (3%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIGEGNG----CNPTSFNKSHV 170
           RC +P C++  N+ Y   WLN+ VP++ G P  C R+  I   +     C+   F++ ++
Sbjct: 55  RCEVPGCDNGPNSVYHPEWLNNTVPFRHGIPAQCERFQPITNASLDNLLCDADDFDQKNI 114

Query: 171 IKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           I+C +++F+ DEV ++N+FN+ C  N WKLT+VG+I+ +G  +  P   +ISD+
Sbjct: 115 IECGSFIFEDDEVTIVNDFNITCPNNDWKLTLVGTINNVGQFVALPIAGYISDR 168

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792135|ref|XP_320175.3| AGAP012383-PA [Anopheles gambiae str. PEST] gi|116116755|gb|EAA00192.3| AGAP012383-PA [Anopheles gambiae str. PEST]

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 19/129 (14%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHI----GEGNGCNPTSFN---- 166
           RC IPECE+  + +YLT WL  AVPY+   P  C RY       G+   C  + FN    
Sbjct: 59  RCYIPECENRTDAAYLTEWLPAAVPYQRNQPAGCERYEAFVNITGDYLQCQASDFNHSAI 118

Query: 167 -----------KSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGS 215
                       S +I C+A+VFQT+E  ++ +FN+ C  N WKLT+VG+I+ +G  +  
Sbjct: 119 TRCFDFVDDFNTSAIIPCDAFVFQTEESTIVRDFNITCAHNDWKLTLVGTINNVGQFVAL 178

Query: 216 PFCAFISDK 224
           P   ++SD+
Sbjct: 179 PIAGYLSDR 187

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184022|gb|EFN70576.1| Solute carrier family 22 member 21 [Camponotus floridanus]

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 8/114 (7%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYG----HIGEGNGCNPTSFNKSHV 170
           RCL+PECE+  NT++  PW+N + P  +G    C RY     H G    C+ TSF     
Sbjct: 80  RCLVPECENPENTTFEPPWINISAPKINGKISECTRYAVRDNHFGT---CSKTSFTNV-T 135

Query: 171 IKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
            +C +WV+   E  +L+E++L CD+NRWKLT+VG+I  +G  +G  F  +ISD+
Sbjct: 136 RECGSWVYDPYEHTILDEWDLTCDDNRWKLTLVGTIQSVGQFIGLIFAGYISDR 189

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193627254|ref|XP_001952716.1| PREDICTED: solute carrier family 22 member 21-like [Acyrthosiphon pisum]

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 10/119 (8%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDG--YPQNCFRYGH-------IGEGNGCNPTSF 165
           RC +P+C+   N  Y   WLN  VP+K+    P  C +Y +       +   N CN  +F
Sbjct: 47  RCEVPQCDFE-NPIYDPVWLNRVVPFKEKNIQPYKCLKYHYRQTNESDVSANNTCNFEAF 105

Query: 166 NKSHVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           + +   KCN WVF   E  ++N+F + C+EN+WKL++VG+++ +G  +G P   FISDK
Sbjct: 106 DVNSKEKCNKWVFGETERTIVNDFGIMCEENKWKLSMVGTVNSIGQFVGIPLAGFISDK 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170064791|ref|XP_001867672.1| organic cation transporter [Culex quinquefasciatus] gi|167882045|gb|EDS45428.1| organic cation transporter [Culex quinquefasciatus]

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 6/116 (5%)

Query: 115 RCLIPECEHAANTSYLTP-WLNHAVPYKDGYPQNCFRYGHIG----EGNGCNPT-SFNKS 168
           RC+IP C+    ++   P WLN+ +P+KDG P  C R+  I     E   C+   SFN+S
Sbjct: 55  RCVIPGCDDTGQSTPYNPTWLNNTIPFKDGMPVQCERFAPISNESLERQYCDAAGSFNRS 114

Query: 169 HVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
             ++C+ ++F+ +EV ++ +F + C +N WKLT+VG+I+ +G  +  P   +ISD+
Sbjct: 115 VTVECSDFIFEDEEVTIVRDFGITCPQNDWKLTLVGTINNIGQFIALPIGGYISDR 170

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170064793|ref|XP_001867673.1| organic cation transporter [Culex quinquefasciatus] gi|167882046|gb|EDS45429.1| organic cation transporter [Culex quinquefasciatus]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 5/114 (4%)

Query: 115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGHIG----EGNGCNPTSFNKSHV 170
           RC +P C+    T++   WLN  VP ++G P  C  +  I     + + C+ + FN   V
Sbjct: 55  RCHVPGCDDV-QTTWHPAWLNETVPMRNGVPAQCEMFAPISNSSLDNDSCDVSKFNNGAV 113

Query: 171 IKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           I+C+ +V++ DEV ++N+FN+ C  N WKLT+VG+I+ +G  +  P   ++SD+
Sbjct: 114 IQCDKFVYEEDEVTIVNDFNITCPYNDWKLTMVGTINNIGQFVALPIAGYLSDR 167

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0037140	568	CG7442 [Drosophila melanogaste	0.477	0.188	0.330	1.2e-10
FB|FBgn0037144	572	CG7458 [Drosophila melanogaste	0.258	0.101	0.482	9.7e-08
FB|FBgn0037143	367	CG7448 [Drosophila melanogaste	0.415	0.253	0.316	1.9e-06
UNIPROTKB|E2R0K0	552	SLC22A1 "Uncharacterized prote	0.620	0.251	0.303	3.8e-06
MGI|MGI:1929481	564	Slc22a21 "solute carrier famil	0.303	0.120	0.366	2e-05
ZFIN|ZDB-GENE-120215-78	537	si:dkey-166k12.1 "si:dkey-166k	0.281	0.117	0.4	4.3e-05
ZFIN|ZDB-GENE-040724-70	542	si:dkey-119m7.4 "si:dkey-119m7	0.267	0.110	0.4	4.4e-05
UNIPROTKB|F1NXX3	420	SLC22A4 "Uncharacterized prote	0.375	0.2	0.355	5e-05
UNIPROTKB|C0MP43	551	SLC22A4 "Ergothioneine transpo	0.241	0.098	0.454	0.0001
RGD|621149	553	Slc22a4 "solute carrier family	0.491	0.198	0.303	0.00013

FB|FBgn0037140 CG7442 [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/118 (33%), Positives = 64/118 (54%)

Query:   115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYP-QNCFRY--GHIGEGNG----CNPTSFNK 167
             RC + EC+    ++Y  P  N ++P K+G    +C RY    + + N     C+   F K
Sbjct:    72 RCSVEECD-LPGSNYYEPHTNWSIP-KNGKDLDSCNRYTNSELPQWNHSVDICSADHFTK 129

Query:   168 S-HVIKCNAWVFQTDEVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
             +      N +VF+ DEV + N+F + CD+  WKL++VG+I+ LG   G P   F++D+
Sbjct:   130 NKEACAHNEFVFRDDEVTISNDFGIFCDDE-WKLSMVGTINNLGQFFGIPIGGFVADR 186

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037144 CG7458 [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 9.7e-08, P = 9.7e-08
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query:    54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLGFVL 111
             LFLIG   IT ++ +LY  T ++FPT +R +LL+ CSM+GRIG ++APQ  LL  + +
Sbjct:   465 LFLIGKLAITCSFQILYFFTSEIFPTNVRNTLLSLCSMVGRIGSMLAPQTPLLAKYYI 522

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037143 CG7448 [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 32/101 (31%), Positives = 55/101 (54%)

Query:   115 RCLIPECEHAANTSYLTPWLNHAVPYKDGYPQNCFRYGH----IGEGNGCNPTSFNKSHV 170
             RC I  C+   ++ Y  P+LN   P + G    C +Y      +G+ + CN +SF+    
Sbjct:    77 RCNITMCD-GLDSRYEEPFLNFTTPQRHGNWAQCEQYAVRSNLVGQPS-CNVSSFDVGQR 134

Query:   171 IKCNAWVFQTD-EVNLLNEFNLECDENRWKLTIVGSIDGLG 210
             + C+A    TD E  +  EFN+ C + +WKL++VG+++ +G
Sbjct:   135 VPCDAGYKMTDGEKTIAAEFNIFCFD-QWKLSMVGTVNNIG 174

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

UNIPROTKB|E2R0K0 SLC22A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 48/158 (30%), Positives = 70/158 (44%)

Query:    82 RQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIP-ECEHAANTSY-LTPWLNHAVP 139
             +Q+ L  C +      V    VFL   F   D RCL P   E      +     LN+ VP
Sbjct:    19 KQAFLTLCLLSAAFAPVYVGIVFL--AFT-PDHRCLSPGAAELGRRCGWSAAEELNYTVP 75

Query:   140 YK----DGYPQNCFRYGHIGEGN--GC-NPTS---FNKSHVI--KC-NAWVFQTDEVNLL 186
                   D +P+ C  Y      +  GC +P +    N+SH+    C + W + T   +++
Sbjct:    76 GPGPTGDAFPRQCRSYAVDWNQSALGCVDPLAGLAANRSHLPLGPCLHGWAYDTPGSSIV 135

Query:   187 NEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
              EFNL CD N WK+ +  S   LG  LGS    +I+D+
Sbjct:   136 TEFNLVCD-NSWKVDLFQSCVNLGFFLGSLGVGYIADR 172

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

MGI|MGI:1929481 Slc22a21 "solute carrier family 22 (organic cation transporter), member 21" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 26/71 (36%), Positives = 45/71 (63%)

Query:    38 VDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQ 97
             V + P+ LH++    TL ++G  GITSAY+++YV T +++PT +R   +   S   R+G 
Sbjct:   420 VQLVPSDLHYL--STTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGS 477

Query:    98 VIAPQVFLLLG 108
             +++P  F+ LG
Sbjct:   478 ILSPY-FVYLG 487

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IDA

GO:0015879 "carnitine transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0031231 "intrinsic to peroxisomal membrane" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-120215-78 si:dkey-166k12.1 "si:dkey-166k12.1" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:    42 PTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP 101
             P    HV  R  L ++G  GIT+++ ++YV + ++FPT LRQ+ +   SM  R+G V+AP
Sbjct:   399 PADSAHV--RTALAMVGKFGITASFAIIYVYSAELFPTVLRQTGIGVSSMFARMGGVLAP 456

Query:   102 QVFLL 106
              + LL
Sbjct:   457 LINLL 461

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040724-70 si:dkey-119m7.4 "si:dkey-119m7.4" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 24/60 (40%), Positives = 40/60 (66%)

Query:    49 VFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
             V R  L ++G  GIT++ +++Y+ + ++FPT +RQ+ +   SM  R G VIAP ++LL G
Sbjct:   415 VVRTVLAMVGKFGITASLSIVYIYSAEVFPTVIRQNGIGMGSMCARAGGVIAPVIYLLRG 474

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NXX3 SLC22A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query:    19 FLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFP 78
             + I  T +     VL++N V   PT L   V    L ++G  GIT+A+++LYV  V+++P
Sbjct:   268 YSISGTLVLGGGVVLFINLV---PTDLS--VLSVCLVMLGKFGITAAFSMLYVYNVELYP 322

Query:    79 TPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
             T +R   +   S   R+G +IAP  F+ LG
Sbjct:   323 TLVRNMAVGATSTASRLGSIIAPY-FVYLG 351

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0015491 "cation:cation antiporter activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

UNIPROTKB|C0MP43 SLC22A4 "Ergothioneine transporter (ETT)" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query:    54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLLG 108
             L +IG  GITSA+++LYV T +++PT +R   +   SM  RIG ++AP  F+ LG
Sbjct:   429 LAMIGKFGITSAFSMLYVFTAELYPTLVRNMAVGLTSMASRIGSIVAPY-FVYLG 482

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015491 "cation:cation antiporter activity" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|621149 Slc22a4 "solute carrier family 22 (organic cation transporter), member 4" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 40/132 (30%), Positives = 61/132 (46%)

Query:   109 FVLG--DSRCLIPECEHAANTSYLTPWLNHAVPY--KDG--YPQNCFRYGHIGEGN---- 158
             F+ G  + RCL+P   H  N S  + W NH++P   KDG   PQ+C RY      N    
Sbjct:    41 FLAGTPEHRCLVP---HTVNLS--SAWRNHSIPLETKDGRQVPQSCRRYRLATIANFSAL 95

Query:   159 GCNP---TSFNKSHVIKC-NAWVFQTDEV--NLLNEFNLECDENRWKLTIVGSIDGLGAL 212
             G  P       +     C + W +  D     ++ E+NL C+++ WK  +  S+  +G L
Sbjct:    96 GLEPGLDVDLEQLEQESCLDGWEYSKDVFLSTIVTEWNLVCEDD-WKTPLTTSLFFVGVL 154

Query:   213 LGSPFCAFISDK 224
              GS     +SD+
Sbjct:   155 CGSFVSGQLSDR 166

GO:0005524 "ATP binding" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015101 "organic cation transmembrane transporter activity" evidence=IDA

GO:0015293 "symporter activity" evidence=IEA

GO:0015651 "quaternary ammonium group transmembrane transporter activity" evidence=IMP;IDA

GO:0015695 "organic cation transport" evidence=IDA

GO:0015697 "quaternary ammonium group transport" evidence=IMP;IDA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-07
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-04

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 40  MFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVI 99
           +   P+     R  L ++G  GITSA+ ++Y+ T +++PT +R   +  CS + R+G +I
Sbjct: 402 LLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461

Query: 100 APQVFLLLGF 109
           +P +  L   
Sbjct: 462 SPFLVYLGEK 471

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 82  RQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSRCLIPECEHAANTSYLTPWLNHAVPY- 140
           R++ L     I  +       VFL  G    +  C +P    AAN S       +     
Sbjct: 8   RRTFLLLALPIALLAFHFVLIVFL--GATP-EHHCRLP---DAANLSS--RCELNLTLPR 59

Query: 141 -KDGYPQNCFRYGHIG----EGNGCNPT---SFNKSHVIKC-NAWVFQTDEV--NLLNEF 189
             DG P++C R+           GC P        +    C + W +  D     ++ E+
Sbjct: 60  LPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEW 119

Query: 190 NLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK 224
           +L C E+ WK+ +  S   +G LLGS    ++SD+
Sbjct: 120 DLVC-EDAWKVDLTQSCFFVGVLLGSFVFGYLSDR 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
TIGR00898	505	2A0119 cation transport protein.	99.5
KOG0253|consensus	528		99.42
KOG0255|consensus	521		98.93
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.9
TIGR00898	505	2A0119 cation transport protein.	98.7
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.63
KOG0255|consensus	521		98.39
PRK09952	438	shikimate transporter; Provisional	98.28
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.26
PRK10642	490	proline/glycine betaine transporter; Provisional	98.22
KOG0254|consensus	513		98.19
KOG0252|consensus	538		98.19
KOG0569|consensus	485		98.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.02
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.01
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.85
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.77
TIGR00895	398	2A0115 benzoate transport.	97.76
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.75
TIGR00891	405	2A0112 putative sialic acid transporter.	97.63
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.62
PRK15075	434	citrate-proton symporter; Provisional	97.56
PRK12307	426	putative sialic acid transporter; Provisional	97.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.49
TIGR00893	399	2A0114 d-galactonate transporter.	97.49
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.46
PRK15075	434	citrate-proton symporter; Provisional	97.46
TIGR00900	365	2A0121 H+ Antiporter protein.	97.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.45
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.43
TIGR00895	398	2A0115 benzoate transport.	97.42
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.4
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.38
TIGR00891	405	2A0112 putative sialic acid transporter.	97.37
PRK10642	490	proline/glycine betaine transporter; Provisional	97.36
PRK12307	426	putative sialic acid transporter; Provisional	97.34
TIGR00900	365	2A0121 H+ Antiporter protein.	97.32
PRK03699	394	putative transporter; Provisional	97.29
PRK11663	434	regulatory protein UhpC; Provisional	97.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.28
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.28
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.27
PRK03893	496	putative sialic acid transporter; Provisional	97.26
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.23
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.22
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.21
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.21
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.2
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.19
PRK10054	395	putative transporter; Provisional	97.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.14
PRK03545	390	putative arabinose transporter; Provisional	97.11
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.09
PRK10504	471	putative transporter; Provisional	97.08
PRK09952	438	shikimate transporter; Provisional	97.05
PLN00028	476	nitrate transmembrane transporter; Provisional	97.05
PRK03893	496	putative sialic acid transporter; Provisional	97.04
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.01
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.99
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.99
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.99
TIGR00901	356	2A0125 AmpG-related permease.	96.96
TIGR00901	356	2A0125 AmpG-related permease.	96.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.93
PRK11663	434	regulatory protein UhpC; Provisional	96.91
TIGR00893	399	2A0114 d-galactonate transporter.	96.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.87
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.85
PRK10489	417	enterobactin exporter EntS; Provisional	96.85
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.84
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.83
PRK15011	393	sugar efflux transporter B; Provisional	96.81
PRK05122	399	major facilitator superfamily transporter; Provisi	96.79
KOG0569|consensus	485		96.78
PRK12382	392	putative transporter; Provisional	96.77
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.77
PRK11010	491	ampG muropeptide transporter; Validated	96.73
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.73
PRK10091	382	MFS transport protein AraJ; Provisional	96.71
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.65
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.6
PRK12382	392	putative transporter; Provisional	96.59
PRK03633	381	putative MFS family transporter protein; Provision	96.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.49
PRK09705	393	cynX putative cyanate transporter; Provisional	96.43
PRK05122	399	major facilitator superfamily transporter; Provisi	96.43
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.42
PRK11902	402	ampG muropeptide transporter; Reviewed	96.41
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.41
KOG0254|consensus	513		96.41
PRK09874	408	drug efflux system protein MdtG; Provisional	96.38
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.24
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.23
PRK11043	401	putative transporter; Provisional	96.21
KOG2615|consensus	451		96.18
PRK10489	417	enterobactin exporter EntS; Provisional	96.17
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.1
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.09
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.09
PRK10133	438	L-fucose transporter; Provisional	96.07
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.06
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.02
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.0
PRK10504	471	putative transporter; Provisional	95.98
PRK03699	394	putative transporter; Provisional	95.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	95.93
PRK09528	420	lacY galactoside permease; Reviewed	95.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.82
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.56
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.47
PLN00028	476	nitrate transmembrane transporter; Provisional	95.46
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.38
PTZ00207	591	hypothetical protein; Provisional	95.36
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.29
PRK11010	491	ampG muropeptide transporter; Validated	95.26
PRK03545	390	putative arabinose transporter; Provisional	95.25
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	95.23
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.09
PRK09705	393	cynX putative cyanate transporter; Provisional	95.04
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.02
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.01
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.99
PRK09874	408	drug efflux system protein MdtG; Provisional	94.98
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.84
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.79
PRK10429	473	melibiose:sodium symporter; Provisional	94.65
TIGR00892	455	2A0113 monocarboxylate transporter 1.	94.5
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.36
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	94.28
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.2
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.11
PRK11043	401	putative transporter; Provisional	94.11
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	93.56
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	93.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	93.38
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	93.31
TIGR00805	633	oat sodium-independent organic anion transporter.	92.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	92.59
PRK09669	444	putative symporter YagG; Provisional	92.47
KOG3764|consensus	464		92.32
PRK03633	381	putative MFS family transporter protein; Provision	92.3
PRK09669	444	putative symporter YagG; Provisional	92.23
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	92.2
KOG1330|consensus	493		92.07
PRK15011	393	sugar efflux transporter B; Provisional	92.0
PRK11462	460	putative transporter; Provisional	91.4
PRK10429	473	melibiose:sodium symporter; Provisional	91.06
PRK10054	395	putative transporter; Provisional	90.8
KOG2532|consensus	466		90.62
PF13347	428	MFS_2: MFS/sugar transport protein	90.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	90.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	89.76
PRK11902	402	ampG muropeptide transporter; Reviewed	89.63
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	89.37
PRK10091	382	MFS transport protein AraJ; Provisional	89.01
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	88.65
PRK11652	394	emrD multidrug resistance protein D; Provisional	87.99
PRK10133	438	L-fucose transporter; Provisional	87.83
PRK09848	448	glucuronide transporter; Provisional	87.79
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	87.73
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	87.58
PRK11462	460	putative transporter; Provisional	87.35
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	87.23
KOG1330|consensus	493		86.88
KOG2504|consensus	509		86.78
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	86.65
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	86.59
PRK09528	420	lacY galactoside permease; Reviewed	86.26
PF13347	428	MFS_2: MFS/sugar transport protein	84.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	84.68
PRK10213	394	nepI ribonucleoside transporter; Reviewed	82.06
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	82.02
PRK10473	392	multidrug efflux system protein MdtL; Provisional	81.46
COG2211	467	MelB Na+/melibiose symporter and related transport	81.04

>TIGR00898 2A0119 cation transport protein

Probab=99.50  E-value=1.3e-14  Score=131.45  Aligned_cols=110  Identities=26%  Similarity=0.495  Sum_probs=84.3

Q ss_pred             cccccccccCcccCcCCCCCcccccccccCCCC-CCCCcceeecCCCCCC---CCCCCC----CCCCCcccC-CCeeeCC
Q psy14099        110 VLGDSRCLIPECEHAANTSYLTPWLNHAVPYKD-GYPQNCFRYGHIGEGN---GCNPTS----FNKSHVIKC-NAWVFQT  180 (224)
Q Consensus       110 ~~p~~~C~~p~~~~~~n~~~~~~~~n~tiP~~~-~~~~~C~~y~~~~~~~---~~~~~~----~~~~~~~~C-~~w~yd~  180 (224)
                      .+|||||+.|+..   +.+ .+++++.++|.+. +++++|++|+.++...   .+....    .......+| ++|+|+.
T Consensus        33 ~~p~~~c~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (505)
T TIGR00898        33 ATPEHHCRLPDAA---NLS-SRCELNLTLPRLPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSY  108 (505)
T ss_pred             CCCCcccCCCCcc---cCC-hHhHhceeccCCCCCCCCCCccccccchhhhcccccccchhcccCCCCCCCCCCCcEecC
Confidence            5899999998543   323 3357888888765 5789999998863221   111110    011345688 8999997


Q ss_pred             C--ccccccccccccccchhhhhHHHHHHHHhhhhccceeeeccCC
Q psy14099        181 D--EVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK  224 (224)
Q Consensus       181 ~--~~tivte~~lVC~~~~~~~~~~~s~~~~G~~~G~~~~G~lsDr  224 (224)
                      +  ..++++||||+| |++++..+.++++++|.++|++++|+++||
T Consensus       109 ~~~~~~i~~e~~l~c-~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr  153 (505)
T TIGR00898       109 DTFSSTIVTEWDLVC-EDAWKVDLTQSCFFVGVLLGSFVFGYLSDR  153 (505)
T ss_pred             CcccccEEEEeccee-chHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Confidence            6  589999999999 899999999999999999999999999997

>KOG0253|consensus

Probab=99.42  E-value=1.3e-13  Score=118.64  Aligned_cols=94  Identities=19%  Similarity=0.271  Sum_probs=71.4

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      |-++..+++||.|||+.+...+...+++...++..       .  ......++.+.++++.++++.+.|+|++|+|||.+
T Consensus       397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-------~--~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-------K--TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-------c--CcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            45678888999999998765333222211111210       1  12235567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccee
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      |++|+|.|+.++|+|+++.|++.
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH
Confidence            99999999999999999999876

>KOG0255|consensus

Probab=98.93  E-value=8.3e-10  Score=100.76  Aligned_cols=54  Identities=28%  Similarity=0.583  Sum_probs=50.2

Q ss_pred             cccC-CCeeeCCC--ccccccccccccccchhhhhHHHHHHHHhhhhccceeeeccCC
Q psy14099        170 VIKC-NAWVFQTD--EVNLLNEFNLECDENRWKLTIVGSIDGLGALLGSPFCAFISDK  224 (224)
Q Consensus       170 ~~~C-~~w~yd~~--~~tivte~~lVC~~~~~~~~~~~s~~~~G~~~G~~~~G~lsDr  224 (224)
                      ...| ++|+|+.+  ..|+++|||+|| ++++++.+.|++|++|.++|++++|++|||
T Consensus        88 ~~~~~~~~~~~~~~~~~s~~~~~~~~c-~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~  144 (521)
T KOG0255|consen   88 IVICLDGWVYDYGSSVYSIVSEWNLVC-DSSTLVALGQSLFFLGVLVGSLIFGPLSDR  144 (521)
T ss_pred             cccccceeEecCCCCcccccchhceee-CcHhHHHHHHHHHHHHHHHHHhhheehHhh
Confidence            3567 89999977  689999999999 899999999999999999999999999997

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.90  E-value=3.6e-09  Score=100.45  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=66.7

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      +.+++.++.||+|||++++.++....++.. ++ .+.     ++ .. ..+++.++..++..+.++..+++++|+|||+.
T Consensus       611 G~il~g~L~Dr~GRr~~l~~~~~lsai~~l-l~-~~~-----~s-~~-~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~  681 (742)
T TIGR01299       611 GNIVSALLMDKIGRLRMLAGSMVLSCISCF-FL-SFG-----NS-ES-AMIALLCLFGGLSIAAWNALDVLTVELYPSDK  681 (742)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HH-HHH-----cc-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            567788888899999887664333222222 11 111     21 12 23333344455566677889999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccceeeh
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      |++++|+.++.+++|++++|++...
T Consensus       682 Rgta~Gi~~~~~rlGaiigp~i~g~  706 (742)
T TIGR01299       682 RATAFGFLNALCKAAAVLGILIFGS  706 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00898 2A0119 cation transport protein

Probab=98.70  E-value=6.1e-08  Score=87.85  Aligned_cols=96  Identities=25%  Similarity=0.477  Sum_probs=66.1

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+++.++.||.|||..+..+.....+.+..+.  +.     +....+...++.+++.++....+...+++.+|+||+++|
T Consensus       372 ~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  444 (505)
T TIGR00898       372 KLITLLLIDRLGRRYTMAASLLLAGVALLLLL--FV-----PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVR  444 (505)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--Hc-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            45566778888888876653332222222111  11     111123344445566666777778889999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++++|+.+..+++|++++|++..
T Consensus       445 ~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       445 NLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hhhHhHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999998775

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.63  E-value=7.3e-08  Score=87.71  Aligned_cols=97  Identities=18%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHH-HhhhhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGIT-SAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ElfPt~vR   82 (224)
                      +++.++.||.|||++++.+...+.+++.++.. ..   . ..... ....+.++..++.. +.....+++++|+||+++|
T Consensus       353 ~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~-~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R  426 (502)
T TIGR00887       353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF-AY---N-HLSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYR  426 (502)
T ss_pred             HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH-HH---H-hcchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHH
Confidence            44566889999998866544332222221111 10   0 00011 11122222222222 2344678999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +++.|+.+.+++++++++|++...
T Consensus       427 ~~~~g~~~~~~~~~~~~~~~~~~~  450 (502)
T TIGR00887       427 STAHGISAASGKAGAIIGQFGFLY  450 (502)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhhh
Confidence            999999999999999999987754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0255|consensus

Probab=98.39  E-value=1.2e-06  Score=80.05  Aligned_cols=100  Identities=20%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .....+..++.|||..+..+.......+. .....    + .....+...++.++++++.+.++...+.+.+|++||.+|
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLL-LFGWL----P-DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHh----h-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            34456677888888876553222221111 11111    1 111113456677888888899998889999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeehhc
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLLLG  108 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~~~  108 (224)
                      +++++.++..+++++.++|++.....
T Consensus       441 ~~~~~~~~~~~~~~~i~ap~~~~~~~  466 (521)
T KOG0255|consen  441 NTAVGAISAAARLGSILAPLFPLLLR  466 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999886543

>PRK09952 shikimate transporter; Provisional

Probab=98.28  E-value=2.9e-06  Score=76.01  Aligned_cols=51  Identities=14%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHh-hhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGR-IGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~-~~~~~~~~~~~~  106 (224)
                      ++..+..+...+..+.+.+|+||++.|+++.|+.+..++ +++.++|++...
T Consensus       351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~  402 (438)
T PRK09952        351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAA  402 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333344445566788999999999999999999888776 788899987754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.26  E-value=1.7e-08  Score=90.11  Aligned_cols=104  Identities=17%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-chhHHHHHHHHHHHHHHHHhhh-hHhhhcccccch
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL-HHVVFRQTLFLIGITGITSAYT-VLYVNTVDMFPT   79 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ElfPt   79 (224)
                      +.+++.++.||.|||++++.+...++++...+. .......+.+ ......+++.++..++++..++ ..+.+.+|+|||
T Consensus       302 ~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt  380 (451)
T PF00083_consen  302 GTLLAIFLIDRFGRRKLLIIGLLLMAICSLILG-IIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT  380 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence            455677888999999876664433332222111 0010111111 0112222233333334443444 567999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         80 PLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        80 ~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++|++++|++...+++++.+.|++...
T Consensus       381 ~~R~~~~~~~~~~~~i~~~i~~~~~~~  407 (451)
T PF00083_consen  381 KVRSTGIGLSYAVGRIGGFIIPFLFPY  407 (451)
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999987654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.22  E-value=3.3e-06  Score=76.72  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.+...+....+.+|+||+++|++++|+.++.+++++.++|++...
T Consensus       354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~  400 (490)
T PRK10642        354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAW  400 (490)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556677888999999999999999888899888888887654

>KOG0254|consensus

Probab=98.19  E-value=5.3e-06  Score=75.91  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCC---CCCchhHHHHHHHHHHHHHHHHhhh-hHhhhcccccc
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFP---TPLHHVVFRQTLFLIGITGITSAYT-VLYVNTVDMFP   78 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ElfP   78 (224)
                      .+++.+++||.|||++++.+..++..++.++.........   ......+..++..++....++..++ +.|++.+|+||
T Consensus       346 t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp  425 (513)
T KOG0254|consen  346 TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFP  425 (513)
T ss_pred             HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCc
Confidence            4566788899999999888666655544422221110000   0111233344444444455555554 57899999999


Q ss_pred             hHHHHHHHHHHHHHHhhhcccccce
Q psy14099         79 TPLRQSLLAFCSMIGRIGQVIAPQV  103 (224)
Q Consensus        79 t~vR~~g~g~~~~~~~~~~~~~~~~  103 (224)
                      .++|+++.+++...+++.+.+....
T Consensus       426 ~~~r~~~~s~~~~~n~~~~~~v~~~  450 (513)
T KOG0254|consen  426 LRLRSKGASLAVAVNWLWNFLISFF  450 (513)
T ss_pred             HhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888766543

>KOG0252|consensus

Probab=98.19  E-value=4.5e-07  Score=80.67  Aligned_cols=100  Identities=14%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHH-HHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITG-ITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ElfPt~   80 (224)
                      |+.+...++|+.|||+..+.++..+.+.+.++.. .  +  +.........++..+..++ .-+..+...++++|+|||+
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~-~--y--~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAG-P--Y--NQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcC-C--c--ccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            4455667889999999988877776654442221 1  1  1011111223333333333 3344557899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +|+++.|++.+.|..|++++.+.+..
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhH
Confidence            99999999999999999999887654

>KOG0569|consensus

Probab=98.04  E-value=5.4e-06  Score=75.08  Aligned_cols=106  Identities=13%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCch-hHHHHHHHHHHHHHHHHhhh-hHhhhcccccch
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHH-VVFRQTLFLIGITGITSAYT-VLYVNTVDMFPT   79 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ElfPt   79 (224)
                      ..+++.+++||.|||++++.+...+.+...++.+.+. ........ .+..++..+++.+.++.+.+ +-|.+.+|+||.
T Consensus       321 ~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~-l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~  399 (485)
T KOG0569|consen  321 STLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALF-LSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ  399 (485)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence            3577889999999999988755444333322221111 00000011 11233444555555555544 468999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccccceeehhc
Q psy14099         80 PLRQSLLAFCSMIGRIGQVIAPQVFLLLG  108 (224)
Q Consensus        80 ~vR~~g~g~~~~~~~~~~~~~~~~~~~~~  108 (224)
                      .-|.++.+++..+.++.+++..+.++..+
T Consensus       400 ~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  400 SARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888777665433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.02  E-value=3.6e-05  Score=56.34  Aligned_cols=93  Identities=13%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      ....+.||.|||+.+..+......... ... .      ... .+...+..++..+..+......+.+..|.+|++.|++
T Consensus        17 ~~g~~~d~~g~~~~~~~~~~~~~~~~~-~~~-~------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   87 (141)
T TIGR00880        17 LSGLLTDRFGRKPVLLVGLFIFVLSTA-MFA-L------SSN-ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGV   87 (141)
T ss_pred             hHHHHHhhcchhHHHHHHHHHHHHHHH-HHH-H------hcc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence            344556777777776553322222111 111 1      111 2223333334444445555667889999999999999


Q ss_pred             HHHHHHHHHhhhcccccceeeh
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +.++.+....++..++|.+...
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~  109 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGV  109 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHH
Confidence            9999999999999988876654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.01  E-value=1.7e-05  Score=70.80  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=32.0

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceee
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFL  105 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~  105 (224)
                      .....+.+.+|+||++.|++++|++++.+++ ++...|++..
T Consensus       353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~  394 (432)
T PRK10406        353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL  394 (432)
T ss_pred             HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence            3345778999999999999999999998886 3445666444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.99  E-value=1.7e-05  Score=71.16  Aligned_cols=97  Identities=18%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhh-hhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAY-TVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt~vR   82 (224)
                      +++..+.||.|||++++.+...+.+....+.. ..   . ............++..++....+ ...+.+.+|+||++.|
T Consensus       324 ~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  398 (479)
T PRK10077        324 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT-AF---Y-TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  398 (479)
T ss_pred             HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH-HH---h-cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence            44556678888888776644433332221111 10   0 11111111112222222223233 3468999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++++|+.+..+++++.+++++.+
T Consensus       399 ~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        399 GKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999988876654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.96  E-value=1.2e-05  Score=70.57  Aligned_cols=53  Identities=13%  Similarity=0.036  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..++....++..+.+.+|+||++.|++++|+.+..+|+++..+|.+...
T Consensus       286 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~  338 (368)
T TIGR00903       286 FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML  338 (368)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence            33444455556667788999999999999999999999999999888876643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.85  E-value=4.9e-05  Score=69.21  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCch--hHHHHHHHHHHHHHHHHhhhhHhhhcccccch
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHH--VVFRQTLFLIGITGITSAYTVLYVNTVDMFPT   79 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt   79 (224)
                      +.++...+.||.|||+.+..+.....+... +.. +.   ++....  ....++.-++..++.+..+.....|.+|.+|.
T Consensus        72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~-~~~-~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~  146 (502)
T TIGR00887        72 GQLFFGWLADKLGRKRVYGMELIIMIIATV-ASG-LS---PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK  146 (502)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHH-HHH-Hc---cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh
Confidence            345566777888888776553322222111 111 11   111110  12233333344455555666789999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccccee
Q psy14099         80 PLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        80 ~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +.|++++++.+....+|..+++.+.
T Consensus       147 ~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887       147 KWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888877777654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.77  E-value=7.8e-05  Score=71.22  Aligned_cols=92  Identities=16%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      +.++...+.||.|||+.++.+++...+... +. .+.     + . .+..++.-++..++.++.....+.+.+|.+|.+.
T Consensus       218 G~li~G~LsDR~GRR~~lii~lil~~i~~l-l~-afa-----~-s-~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~  288 (742)
T TIGR01299       218 GAFFWGGLADKLGRKQCLLICLSVNGFFAF-FS-SFV-----Q-G-YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK  288 (742)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HH-HHH-----h-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            345556677888888776653322221111 11 111     1 1 2223334444455566666778999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccc
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~  102 (224)
                      |++.+++......+|+++++.
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999877777776666654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00895 2A0115 benzoate transport

Probab=97.76  E-value=0.00014  Score=62.90  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.+||.++.......+..+. +.. ..     . . .....+..++..++.+......+.+.+|.+|.+.|
T Consensus       302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-----~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  372 (398)
T TIGR00895       302 SIIFGWLADRLGPRVTALLLLLGAVFAVL-VGS-TL-----F-S-PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIR  372 (398)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHH-HHH-Hh-----h-C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            34556677888888554432222222121 111 00     1 1 22233334444455666667788999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +++.|+.+..+.+|+.++|.+..
T Consensus       373 g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       373 ATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999987653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.75  E-value=9.2e-05  Score=65.04  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=59.1

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.+..........+. .. ...     + . .+...+..++..++..+.....+.+.+|.+|++.|
T Consensus       272 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~-~~-~~~-----~-~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  342 (406)
T PRK11551        272 SLLIGALMDRLRPRRVVLLIYAGILASLA-AL-AAA-----P-S-FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVR  342 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HH-Hhc-----C-c-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhh
Confidence            34455567788887776543332222221 11 111     1 1 22222233333344445556778899999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +++.|+.+..+++|+.++|.+...
T Consensus       343 g~~~g~~~~~~~~g~~~g~~~~g~  366 (406)
T PRK11551        343 GTGVGAAVAVGRLGSMAGPLLAGQ  366 (406)
T ss_pred             hhhhhHHHHhhhHHHHHHhhhHhh
Confidence            999999999999999999987754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.63  E-value=0.00014  Score=63.19  Aligned_cols=47  Identities=26%  Similarity=0.398  Sum_probs=39.2

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..+.++..+.+.+|.+|++.|++++|+.+..+.+++.++|.+...
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33444556677889999999999999999999999999999987754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.62  E-value=6.4e-05  Score=68.59  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             hhHhhhcccccchH--HHHHHHHHHHHHHhhhcccccceeehh
Q psy14099         67 TVLYVNTVDMFPTP--LRQSLLAFCSMIGRIGQVIAPQVFLLL  107 (224)
Q Consensus        67 ~~~~~~~~ElfPt~--vR~~g~g~~~~~~~~~~~~~~~~~~~~  107 (224)
                      +....+.+|+||++  .|.++.++.++.+++|+.++|.+....
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            44568899999986  799999999999999999999887653

>PRK15075 citrate-proton symporter; Provisional

Probab=97.56  E-value=0.00019  Score=64.07  Aligned_cols=47  Identities=11%  Similarity=0.087  Sum_probs=35.4

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~~  106 (224)
                      ++.+......+.+.+|.+|.+.|+++.|+.++.+++ ++.++|.+...
T Consensus       343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence            333444445678899999999999999998877775 47778876643

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.54  E-value=0.00027  Score=62.49  Aligned_cols=40  Identities=10%  Similarity=0.018  Sum_probs=35.1

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ...+.+..|.+|++.|++++|+.+..+++++.++|.+...
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999987654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.54  E-value=0.00031  Score=62.08  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ...+.+.+|.+|++.|+++.|+.+....+++.++|.+...
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888999999999999999999999999999876654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.49  E-value=0.00024  Score=60.83  Aligned_cols=97  Identities=9%  Similarity=0.015  Sum_probs=57.3

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+.+..+.||.+||+.+..+............  ..     +............+..+..+..+.....+.+|.+|.+.|
T Consensus       257 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~  329 (377)
T TIGR00890       257 RPFLGALSDKIGRQKTMSIVFGISAVGMAAML--FI-----PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANS  329 (377)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--Hc-----ccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhh
Confidence            34556677888888765543332222221111  11     111111122222233333344445567789999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..|+.+....+|+.++|.+...
T Consensus       330 ~~~~g~~~~~~~~g~~~~~~~~g~  353 (377)
T TIGR00890       330 AANYGFLYTAKAVAGIFGGLIASH  353 (377)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986654

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.49  E-value=0.0002  Score=61.48  Aligned_cols=93  Identities=11%  Similarity=0.022  Sum_probs=56.0

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+......... .. .+.     +  ..+...+..++..++.+........+.+|.+|.+.|+
T Consensus        47 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~-~~~-----~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  117 (399)
T TIGR00893        47 FPGGWLLDRFGARKTLAVFIVIWGVFTG-LQ-AFA-----G--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERA  117 (399)
T ss_pred             HhHHHHHHhcCcceeeHHHHHHHHHHHH-HH-HHH-----c--CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHH
Confidence            3445566777777765443322221111 11 111     1  1222333333444444555566789999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +++++......+|..++|.+..
T Consensus       118 ~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893       118 TAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             HHHHHHHHhchHHHHHHHHHHH
Confidence            9999999888888888877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.46  E-value=0.00061  Score=61.13  Aligned_cols=94  Identities=14%  Similarity=0.175  Sum_probs=57.3

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||+.++.+.....+... +. ..      .+. ....++.-++..++.+........+.+|.+|.+.|+
T Consensus        55 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~------~~~-~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~  125 (485)
T TIGR00711        55 PLTGWLAKRFGTRRLFLISTFAFTLGSL-LC-GV------APN-LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG  125 (485)
T ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHH-HH-hC------cCC-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH
Confidence            4455667888888776654333222221 11 11      111 222222333333334444556789999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.++......+|..++|.+...
T Consensus       126 ~~~~~~~~~~~~g~~~g~~~~~~  148 (485)
T TIGR00711       126 RAMAIWGLTVLVAPALGPTLGGW  148 (485)
T ss_pred             HHHHHHHHHHHHHhhhhhccHhH
Confidence            99999988888888888876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.46  E-value=0.00028  Score=62.99  Aligned_cols=38  Identities=11%  Similarity=0.031  Sum_probs=28.3

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccc
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      .+.....+.+|.+|.+.|++.+++......+|..+++.
T Consensus       134 ~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075        134 ELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             cHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999877665555544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.45  E-value=0.00078  Score=57.49  Aligned_cols=52  Identities=10%  Similarity=-0.029  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ..++..+..+........+.+|++|.+.|++..|+.+....+|..++|.+..
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  149 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG  149 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333334444455567899999999999999999999888888888887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.45  E-value=0.0004  Score=61.33  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++..++.+..+.....+.+|.+|.+.|++++++.+....+|..++|.+.
T Consensus       135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3333444555566788999999999999999998888888888888766

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.43  E-value=0.00086  Score=59.56  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ...+....|.+|++.|++++|+.+..+++|+.++|.+...
T Consensus       352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            3456777899999999999999999999999999987754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00895 2A0115 benzoate transport

Probab=97.42  E-value=0.00021  Score=61.74  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=56.4

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||+.+..+......... +. .+      ... .+...+..++..++.+..+.....+.+|.+|.+.|+
T Consensus        70 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~  140 (398)
T TIGR00895        70 LFFGPLADRIGRKRVLLWSILLFSVFTL-LC-AL------ATN-VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRG  140 (398)
T ss_pred             HHhHHHHHHhhhHHHHHHHHHHHHHHHH-HH-HH------ccc-hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhc
Confidence            4455567788888776654332222222 11 11      111 222223333333444445567789999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.|+......+|..++|.+..
T Consensus       141 ~~~~~~~~~~~~g~~~~~~~~~  162 (398)
T TIGR00895       141 TAVGLMFCGYPIGAAVGGFLAG  162 (398)
T ss_pred             hhHhhHhhHHHHHHHHHHHHHH
Confidence            9999988888888887776553

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.41  E-value=0.00061  Score=59.67  Aligned_cols=93  Identities=15%  Similarity=0.046  Sum_probs=54.6

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||+.++.+............  .      .++ .....+..++..+..+..+...+.+.+|.+|.+.|+
T Consensus        56 ~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~--~------~~~-~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~  126 (392)
T PRK10473         56 LFAGKIADRSGRKPVAIPGAALFIIASLLCS--L------AET-SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA  126 (392)
T ss_pred             HhHhHHHHHhCChHHHHHHHHHHHHHHHHHH--H------hCc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH
Confidence            3445566777777766553332222221111  1      111 112222222323333444556788999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.++.+....++..++|.+..
T Consensus       127 ~~~~~~~~~~~i~~~~~~~i~~  148 (392)
T PRK10473        127 KVLSLLNGITCIIPVLAPVLGH  148 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888887654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.40  E-value=0.00055  Score=60.83  Aligned_cols=93  Identities=10%  Similarity=-0.147  Sum_probs=53.7

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..++....+... +. .+.     ++  .....+.-++..++.+..+.....+.+|.||.+.|+
T Consensus        61 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~-~~~-----~~--~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg  131 (412)
T TIGR02332        61 IPSNIMLAIIGARRWIAGIMVLWGIAST-AT-MFA-----TG--PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA  131 (412)
T ss_pred             hhHHHHHHHhChHHHHHHHHHHHHHHHH-HH-HHh-----cC--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence            3445566788877776553332222111 11 111     11  112222223333344444455667889999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +.+|+......+|..++|.+..
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332       132 RANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988887777777776543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.39  E-value=0.00054  Score=59.38  Aligned_cols=93  Identities=16%  Similarity=0.118  Sum_probs=56.1

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+......... .. ...     + . .+...+..++..++.+........+.+|.+|.+.|+
T Consensus        44 ~~~g~l~d~~g~~~~~~~~~~~~~i~~~-~~-~~~-----~-~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  114 (377)
T PRK11102         44 LFYGPMADSFGRKPVILGGTLVFALAAV-AC-ALA-----Q-T-IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFS  114 (377)
T ss_pred             HhhchHHhhcCChHHHHHHHHHHHHHHH-HH-HHH-----c-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4445667778888776654333222221 11 111     1 1 222223333333444444456778999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +.+++.+....+|..++|.+..
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~  136 (377)
T PRK11102        115 RMMSFVTLVMTIAPLLAPIIGG  136 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888886553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.38  E-value=0.00055  Score=60.09  Aligned_cols=93  Identities=11%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.+..+.....+... +. .+      ..+ .+..++..++..+..+........+.+|.+|.+.|
T Consensus        67 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  137 (406)
T PRK11551         67 ALLGGRLADRIGRKRILIVSVALFGLFSL-AT-AQ------AWD-FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLR  137 (406)
T ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHH-HH-HH------hcc-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHH
Confidence            34455666777777766553322222111 11 11      111 22223333333344444555677899999999999


Q ss_pred             HHHHHHHHHHHhhhccccccee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++++++.+....+|+.++|.+.
T Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551        138 GTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888887654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.37  E-value=0.00055  Score=59.47  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++..++.+..+.....+.+|.+|.+.|++..++......+|..++|.+..
T Consensus       108 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  157 (405)
T TIGR00891       108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS  157 (405)
T ss_pred             HHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555567788999999999999999988888888877776554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.36  E-value=0.00053  Score=62.33  Aligned_cols=93  Identities=12%  Similarity=0.032  Sum_probs=51.7

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchh---H---HHHHHHHHHHHHHHHhhhhHhhhcccc
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHV---V---FRQTLFLIGITGITSAYTVLYVNTVDM   76 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~El   76 (224)
                      .++...+.||.|||+.+..++....+... +. .+.     ++-..   +   ..++.=++..++.++.+.....+.+|.
T Consensus        74 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~-~~-a~~-----~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~  146 (490)
T PRK10642         74 GLFFGMLGDKYGRQKILAITIVIMSISTF-CI-GLI-----PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEY  146 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHH-HH-Hhc-----ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHh
Confidence            44555667888888776654333222211 11 111     21111   0   112222233344455566778999999


Q ss_pred             cchHHHHHHHHHHHHHHhhhcccccc
Q psy14099         77 FPTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        77 fPt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      +|.+.|++..++......+|..+++.
T Consensus       147 ~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642        147 SPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999988876665555555553

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.34  E-value=0.00062  Score=60.17  Aligned_cols=92  Identities=18%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||+.+..+.....+... ... +      .+ ..+...+.-++..++.+..+.....+.+|.+|.+.|+
T Consensus        71 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~-~~~-~------~~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~  141 (426)
T PRK12307         71 ALFGLLADKFGRKPLMMWSIVAYSVGTG-LSG-L------AS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKS  141 (426)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHH-HHH-H------Hh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhh
Confidence            3445566777888776653333222211 111 1      11 1222223323333444445566788899999999999


Q ss_pred             HHHHHHHHHHhhhccccccee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++.++......+|..++|.+.
T Consensus       142 ~~~~~~~~~~~lg~~~~~~l~  162 (426)
T PRK12307        142 KASAFLVSGFGIGNIIAAYFM  162 (426)
T ss_pred             HhhhHHHHHHhHHHHHHHHHH
Confidence            999998877777777776544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.32  E-value=0.0011  Score=56.49  Aligned_cols=94  Identities=11%  Similarity=-0.041  Sum_probs=58.4

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.+||+++..+.......+. .. ...     +. ..+...+..++..++.+........+..|..|.+.|+
T Consensus       265 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-----~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  336 (365)
T TIGR00900       265 LLLGLLGRYFKRMALMTGAIFVIGLAIL-VV-GLT-----PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG  336 (365)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHH-HH-Hhh-----ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4455677888888776553322222221 11 111     11 1222333333444445555566788999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.|+.+....+++.++|.+..
T Consensus       337 ~~~~~~~~~~~~~~~~g~~~~g  358 (365)
T TIGR00900       337 RVFGAQFSLSHAAWPLGLILAG  358 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887654

>PRK03699 putative transporter; Provisional

Probab=97.29  E-value=0.00076  Score=59.33  Aligned_cols=93  Identities=10%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+++..+.||.|||+.+..+......... +. .+      .+ ..+...+..++..++.+........+.+|.+|.+.|
T Consensus        59 ~~~~g~l~dr~g~r~~~~~~~~~~~i~~~-l~-~~------~~-~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         59 IFLNAWLMEIIPLKRQLIFGFALMILAVA-GL-MF------SH-SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR  129 (394)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH-HH------cc-hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence            34556667888888776654332222111 11 11      11 122222333333333444445567888999999999


Q ss_pred             HHHHHHHHHHHhhhccccccee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++++++.+....+++.++|.+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887777777777777654

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.28  E-value=0.00063  Score=60.75  Aligned_cols=94  Identities=12%  Similarity=0.064  Sum_probs=55.9

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+....+.||.|||+.+..+.....+... +. .+      .+ ..+...+..++..++.+..+.....+.+|.||.+.|
T Consensus        75 ~~~~G~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~------~~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~r  145 (434)
T PRK11663         75 KFVSGIVSDRSNARYFMGIGLIATGIINI-LF-GF------SS-SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTER  145 (434)
T ss_pred             HhhhhHHHhhcCCchhHHHHHHHHHHHHH-HH-HH------Hh-HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHH
Confidence            34555667777777766553333222221 11 11      11 122222222233334444556677899999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++++|+.+....+|+.++|.+..
T Consensus       146 g~~~~~~~~~~~~g~~~~~~~~~  168 (434)
T PRK11663        146 GGWWAIWNTAHNVGGALIPLVVG  168 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888876554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.28  E-value=0.00068  Score=58.64  Aligned_cols=92  Identities=11%  Similarity=0.060  Sum_probs=54.5

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      +...+.||.|||+.+..+............  .      .++ .+...+..++..+..+........+..|.+|.+.|++
T Consensus        59 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~------~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  129 (385)
T TIGR00710        59 LWGPLSDRYGRRPVLLLGLFIFALSSLGLA--L------SNN-IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSR  129 (385)
T ss_pred             hhhhHHHhcCChHHHHHHHHHHHHHHHHHH--H------Hcc-HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHH
Confidence            344556777777766553322222221111  1      111 2222233333334444455567789999999999999


Q ss_pred             HHHHHHHHHhhhcccccceee
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ..|+.+....++..++|.+..
T Consensus       130 ~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710       130 IYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888887776554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.28  E-value=0.00038  Score=60.03  Aligned_cols=52  Identities=15%  Similarity=-0.040  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHH-hhhcccccceeeh
Q psy14099         55 FLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIG-RIGQVIAPQVFLL  106 (224)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~-~~~~~~~~~~~~~  106 (224)
                      .++..++....+.....+.+|++|.+.|+++.++.+..+ .+|+.++|.+...
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       319 VLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            334444455566678899999999999999999865544 5677788876643

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.27  E-value=0.0011  Score=59.47  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             HHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccc
Q psy14099         59 ITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      .+..+..+.....+.+|.+|.+.|++.+++......+|..+++.
T Consensus       131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~  174 (479)
T PRK10077        131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF  174 (479)
T ss_pred             hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34445555667889999999999999999987776777666554

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.26  E-value=0.0011  Score=59.71  Aligned_cols=93  Identities=18%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||++++.+.....+......  +      .. ..+...+..++..++.+..+.....+..|.+|.+.|+
T Consensus        73 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~------~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~  143 (496)
T PRK03893         73 LLLGAMGDRYGRRLAMVISIVLFSVGTLACG--F------AP-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN  143 (496)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH--H------Hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            4455666777777766553322222111111  1      11 1222233333333444555566778899999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.++......+|+.++|.+..
T Consensus       144 ~~~~~~~~~~~~g~~~~~~~~~  165 (496)
T PRK03893        144 KASGFLISGFSIGAVVAAQVYS  165 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888888886554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.23  E-value=0.00035  Score=59.05  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=56.0

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+............  +      .+ ..+...+..++..++.+........+.+|.+|.+.|+
T Consensus        52 ~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~--~------~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  122 (352)
T cd06174          52 LLAGYLSDRFGRRRVLLLGLLLFALGSLLLA--F------AS-SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG  122 (352)
T ss_pred             HhHHHHHHHhCCchhhHHHHHHHHHHHHHHH--H------hc-cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchh
Confidence            3444556777777765553332222222111  1      11 1222333333333444445566789999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.++......+|..++|.+..
T Consensus       123 ~~~~~~~~~~~~g~~~~~~~~~  144 (352)
T cd06174         123 RALGLFSAGFGLGALLGPLLGG  144 (352)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999888888888887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.22  E-value=0.0011  Score=59.73  Aligned_cols=39  Identities=13%  Similarity=0.111  Sum_probs=32.0

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceeeh
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFLL  106 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~~  106 (224)
                      ..+.+..|.+|.+.|+++.|+.+..+.+ |+.++|.+...
T Consensus       369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            3456777999999999999999999997 66788876654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.21  E-value=0.0014  Score=55.75  Aligned_cols=94  Identities=13%  Similarity=0.065  Sum_probs=58.7

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.++.+.....+...+..  +.     + + .+..++..++..++.+........+.+|.+|.+.|+
T Consensus        50 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~-----~-~-~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~  120 (352)
T PF07690_consen   50 PFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA-----S-N-FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERG  120 (352)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH-----C-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH
T ss_pred             HHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh-----h-h-HHHHhhhccccccccccccccccccccccchhhhhh
Confidence            4455566777777766554433333211111  11     1 1 223334444444555556667889999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +.+++......+|..++|.+...
T Consensus       121 ~~~~~~~~~~~~g~~~g~~l~~~  143 (352)
T PF07690_consen  121 RAFGILSAGFSLGSILGPLLGGF  143 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhhcccchhhh
Confidence            99999998888888888876654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.21  E-value=0.0013  Score=58.49  Aligned_cols=94  Identities=18%  Similarity=0.058  Sum_probs=53.3

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+....+.||.|||+.++.+.....+... .. .+      .++.. ..++.-++..++.+......+++..|.||.+.|
T Consensus        68 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~-~~------a~~~~-~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         68 QWLLGPLSDRIGRRPVLITGALIFTLACA-AT-LF------TTSMT-QFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHhhhHHHHHcCchHHHHHHHHHHHHHHH-HH-HH------cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34456677888888876654332222111 11 11      11111 222222222222222234467889999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.+++......++..++|.+..
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~  161 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGA  161 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888877776553

>TIGR00889 2A0110 nucleoside transporter

Probab=97.20  E-value=0.0017  Score=57.89  Aligned_cols=96  Identities=8%  Similarity=-0.004  Sum_probs=54.3

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-hhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLH-HVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ....+.||.|||+++..+.....+.+.+..  ..   . ... ..+...+..++..+...........+.+|.+|++.|+
T Consensus       270 ~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~--~~---~-~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g  343 (418)
T TIGR00889       270 TIPFFLKRFGIKKVMLLSLVAWALRFGFFA--YG---D-PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA  343 (418)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH--Hc---C-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            344566777888776654433332222111  10   0 111 1111222223333333344445678899999999999


Q ss_pred             HHHHHHH-HHHhhhcccccceeeh
Q psy14099         84 SLLAFCS-MIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~-~~~~~~~~~~~~~~~~  106 (224)
                      ++.|+.+ ....+|+.++|.+...
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999997 5567888888877654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.19  E-value=0.0012  Score=55.79  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=59.9

Q ss_pred             hhHHHHhcccchHH-HHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQT-LFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      ++...+.||.|||+ .+..+......... ... ..     .+  .+...+..++..++.+..+.....+..|.+|.+.|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~-----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  299 (352)
T cd06174         229 LLGGLLSDRLGRRRLLLLIGLLLAALGLL-LLA-LA-----PS--LALLLVALLLLGFGLGFAFPALLTLASELAPPEAR  299 (352)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHH-Hh-----cc--HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHH
Confidence            34445567888777 55443332222222 111 11     11  22333344444455566667788999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..|+.+....+++.++|.+...
T Consensus       300 ~~~~~~~~~~~~~~~~i~~~i~g~  323 (352)
T cd06174         300 GTASGLFNTFGSLGGALGPLLAGL  323 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=97.16  E-value=0.0014  Score=57.83  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .......+.+|.+|.+.|+++.|+.+....+|..++|.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054        113 FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567888999999999999999988888888888776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.14  E-value=0.0017  Score=57.26  Aligned_cols=93  Identities=11%  Similarity=-0.079  Sum_probs=54.8

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      +...+.||.|||+.++.+.....+... .. .+      .+ ..+...+.-++..++.+........+.+|.+|.+.|++
T Consensus        74 ~~g~l~Dr~grr~~~~~~~~~~~~~~~-~~-~~------~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~  144 (394)
T PRK10213         74 FITQTIQATDRRYVVILFAVLLTLSCL-LV-SF------AN-SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPK  144 (394)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHH-HH-HH------HC-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH
Confidence            334566788888776653332222221 11 11      11 12223333333334444455567788899999999999


Q ss_pred             HHHHHHHHHhhhcccccceeeh
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +.++......++..++|.+...
T Consensus       145 a~~~~~~~~~~g~~ig~~l~~~  166 (394)
T PRK10213        145 ALSVIFGAVSIALVIAAPLGSF  166 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888777777777765543

>PRK03545 putative arabinose transporter; Provisional

Probab=97.11  E-value=0.0023  Score=56.09  Aligned_cols=94  Identities=7%  Similarity=-0.034  Sum_probs=54.6

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+......... .. .+.     + . .+...+.-++..+..+..+.....+.+|.+|.+.|+
T Consensus        62 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~-~~~-----~-~-~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~  132 (390)
T PRK03545         62 LPLMLLTSNVERRKLLIGLFVLFIASHV-LS-ALA-----W-N-FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA  132 (390)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHH-HH-HHh-----c-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Confidence            3445667888888876664332222211 11 111     1 1 222222222222222333445668889999999999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +++|+......+|..++|.+...
T Consensus       133 ~~~g~~~~~~~~g~~ig~~l~~~  155 (390)
T PRK03545        133 QALSLLATGTALAMVLGLPLGRV  155 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999888888888888876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.09  E-value=0.0018  Score=58.12  Aligned_cols=92  Identities=8%  Similarity=0.026  Sum_probs=49.1

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+....+.||.|||+.++.+.....+... ... +.   +.........++..++..++.+..+.......+|.||.+.|
T Consensus        80 ~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~-~~~-~~---~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r  154 (452)
T PRK11273         80 KFIMGSVSDRSNPRVFLPAGLILAAAVML-FMG-FV---PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  154 (452)
T ss_pred             HhhhhhhhhccCCchhHHHHHHHHHHHHH-HHH-hh---hcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHH
Confidence            34555667888888776554332222111 111 11   10111122222222333334444444455677899999999


Q ss_pred             HHHHHHHHHHHhhhccc
Q psy14099         83 QSLLAFCSMIGRIGQVI   99 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~   99 (224)
                      ++++|+.+....+|+.+
T Consensus       155 ~~~~~~~~~~~~~g~~~  171 (452)
T PRK11273        155 GGIVSVWNCAHNVGGGL  171 (452)
T ss_pred             HHHHHHHHHHHHhhhhH
Confidence            99999977777776543

>PRK10504 putative transporter; Provisional

Probab=97.08  E-value=0.0027  Score=57.04  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=54.9

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      ++...+.||.|||+.++.+......... .. .+      ... .+..++..++..++.+........+..|.+|.+.|+
T Consensus        63 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~-~~-~~------~~~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  133 (471)
T PRK10504         63 PASGWLADRVGVRNIFFTAIVLFTLGSL-FC-AL------SGT-LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM  133 (471)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHH-HH-HH------hCC-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence            3445566777777765553322222111 11 11      111 222233333333444444556778889999999999


Q ss_pred             HHHHHHHHHHhhhcccccceee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.|+......+|..++|.+..
T Consensus       134 ~~~~~~~~~~~~g~~~g~~~~g  155 (471)
T PRK10504        134 AAMTFVTLPGQVGPLLGPALGG  155 (471)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH
Confidence            9999988888888888887654

>PRK09952 shikimate transporter; Provisional

Probab=97.05  E-value=0.0015  Score=58.44  Aligned_cols=41  Identities=7%  Similarity=0.034  Sum_probs=29.7

Q ss_pred             HHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccc
Q psy14099         62 ITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        62 ~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      .++.+.....+.+|.+|.+.|++..+.......+|..+++.
T Consensus       139 ~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        139 VGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             hcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            33444556789999999999998887776666666665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.05  E-value=0.0014  Score=59.43  Aligned_cols=37  Identities=11%  Similarity=0.096  Sum_probs=28.5

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ....+.+|.||.+.|++++|+.+..+.+|+.+++.+.
T Consensus       143 ~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~  179 (476)
T PLN00028        143 SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM  179 (476)
T ss_pred             HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999998877766666665544

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.04  E-value=0.00091  Score=60.38  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             hhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         66 YTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ......+..|.+|.+.|++++|+.+..+.+|+.++|.+...
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~  424 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGAL  424 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHH
Confidence            34567788999999999999999999999999898876643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.01  E-value=0.0019  Score=57.67  Aligned_cols=42  Identities=12%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccc
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP  101 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~  101 (224)
                      +..++.+.....+.+|.+|.+.|++..++.......|..+++
T Consensus       136 ~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406        136 LSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             hhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            334445566789999999999999988875544444444444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.00  E-value=0.0033  Score=53.84  Aligned_cols=44  Identities=11%  Similarity=0.172  Sum_probs=36.7

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .+.....+.+..|.+|.+.|+++.|+.+....+|+.++|.+...
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  368 (379)
T TIGR00881       325 YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY  368 (379)
T ss_pred             hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            33444567789999999999999999999999999999987654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.99  E-value=0.0033  Score=55.60  Aligned_cols=92  Identities=9%  Similarity=-0.013  Sum_probs=53.2

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      ++..+.||.|||+.+..+......... .. ..      .++ .+...+..++..+..+........+..|.+|.+.|++
T Consensus        65 ~~G~l~dr~g~k~~l~~~~~~~~~~~~-~~-~~------~~~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         65 FGGAIADRFGAKPMIVTGMLMRAAGFA-TM-AI------AHE-PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             hhhHHHHHhCchHHHHHHHHHHHHHHH-HH-HH------hcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            445566777777776654333332222 11 11      111 2222222233233333333456778899999999999


Q ss_pred             HHHHHHHHHhhhcccccceee
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +.|+......+|..++|.+..
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g  156 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGS  156 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988888887777776554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.99  E-value=0.00034  Score=59.97  Aligned_cols=90  Identities=10%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.++.+.....+... +.. +.     +  ..+...+..++..++.+........+.+|.+|.+.|
T Consensus        47 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~-~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r  117 (379)
T TIGR00881        47 KFVMGSVSDRSNPRVFLPIGLILCAIVNL-FFG-FS-----T--SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER  117 (379)
T ss_pred             hhhhhHHHHhhCCeehhHHHHHHHHHHHH-HHH-Hh-----h--hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhh
Confidence            34455667777777776554332222221 111 11     1  122223333333333344455678899999999999


Q ss_pred             HHHHHHHHHHHhhhccccc
Q psy14099         83 QSLLAFCSMIGRIGQVIAP  101 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~  101 (224)
                      +++.++......+|+.++|
T Consensus       118 ~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881       118 GTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             eeeEeehhccchhHHHHHH
Confidence            9999998888888888877

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.99  E-value=0.0025  Score=56.13  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .....+.+..|.||.+.|.++.++......++..++|.+..
T Consensus       118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  158 (406)
T PRK15402        118 IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA  158 (406)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456788899999999999999887777777777776543

>TIGR00901 2A0125 AmpG-related permease

Probab=96.96  E-value=0.0046  Score=53.32  Aligned_cols=40  Identities=10%  Similarity=0.027  Sum_probs=32.7

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+.+|++|.+.|+.+.|+......+|..++|.+...
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467889999999999999999888788888877776543

>TIGR00901 2A0125 AmpG-related permease

Probab=96.96  E-value=0.0045  Score=53.34  Aligned_cols=40  Identities=5%  Similarity=-0.042  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHH
Q psy14099         54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIG   93 (224)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~   93 (224)
                      ..++..+.....+.....+..|++|++.|++.+|+.+...
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            3344445556667778999999999999999999977654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.93  E-value=0.0016  Score=64.84  Aligned_cols=96  Identities=3%  Similarity=-0.086  Sum_probs=56.3

Q ss_pred             hhHHHHhcccchHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGIT-GITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      +++..+.||+|||++++.+.. .++..+...+...      ... .+..+++.++..++.+......+.+.+|++|.+.|
T Consensus        65 ~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~------~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  137 (1146)
T PRK08633         65 SPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY------LGW-FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENL  137 (1146)
T ss_pred             hhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH------Hcc-HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccc
Confidence            344556778888887665332 1211111011100      111 22222333333344444445678899999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++++|+......+|..++|.+...
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~  161 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSF  161 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888888876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.91  E-value=0.0044  Score=55.31  Aligned_cols=39  Identities=5%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ....+.+|.+|++.|++++|+.+..+.+|+.++|.+...
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~  395 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAK  395 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence            445678999999999999999999999999999987754

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.90  E-value=0.0036  Score=53.61  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+.+.+|.+|.+.|+++.|+.+....+|+.++|.+...
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~  369 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA  369 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhh
Confidence            456788999999999999999999999999999999987654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.90  E-value=0.0018  Score=58.16  Aligned_cols=47  Identities=17%  Similarity=0.029  Sum_probs=37.5

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..+.....+.+|.+|.+.|++.+|+......+|..++|.+...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~  189 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGW  189 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455677899999999999999999998888888888876543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.89  E-value=0.0038  Score=54.82  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=31.6

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ......+|.+|.+.|++.+++......+|+.++|.+...
T Consensus        98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~  136 (368)
T TIGR00903        98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK  136 (368)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556899999999999999988888888888765543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.87  E-value=0.0017  Score=57.98  Aligned_cols=45  Identities=13%  Similarity=0.107  Sum_probs=33.8

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++.+..+.....+.+|.||.+.|++++|+.+....+++.++|.+.
T Consensus       130 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712       130 WFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            333444455667788999999999999998888878877776543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.85  E-value=0.003  Score=54.38  Aligned_cols=40  Identities=18%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      .+.....+.+|.+|.+.|++..++......+|..+++.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       107 SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            3445677899999999999999988766666655555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.85  E-value=0.0062  Score=53.84  Aligned_cols=47  Identities=9%  Similarity=-0.002  Sum_probs=37.1

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.+......+.+..|..|.+.|+++.|+.+....+|..++|.+...
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence            33333334566888999999999999999998888888888887754

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.84  E-value=0.0042  Score=53.58  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=35.3

Q ss_pred             HHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         59 ITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .++.+........+..|.+|.+. +++.|+.+....+|..++|.+...
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~g~  345 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGRA-GAATTLYTNTGRVGWIIAGSVGGI  345 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445566788899999864 599999998888999888876653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.83  E-value=0.0059  Score=54.75  Aligned_cols=98  Identities=12%  Similarity=0.092  Sum_probs=56.8

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +++..+.||.|||+++..+......... +.. +  ... +....+......++..++.+..+........|..|.+.|+
T Consensus       309 ~~~g~l~~r~~~~~~~~~g~~~~~~~~~-~~~-~--~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g  383 (485)
T TIGR00711       309 PIAGRMGDKIDPRKLVTIGLILYAVGFY-WRA-F--TFT-PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA  383 (485)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHHH-HHh-c--cCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh
Confidence            4455567888888776554433332222 111 0  011 1111222222233333444444555566667889999999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.|+.+....+|+.+++.+...
T Consensus       384 ~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       384 RGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988998888876643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.81  E-value=0.0039  Score=54.85  Aligned_cols=43  Identities=16%  Similarity=0.145  Sum_probs=32.8

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +...+....+..|.+|.+ |+++.++.+....+|+.++|.+...
T Consensus       320 g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~  362 (393)
T PRK15011        320 GILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGI  362 (393)
T ss_pred             HHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445567789999976 8999999888888888888876644

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.79  E-value=0.0069  Score=53.05  Aligned_cols=49  Identities=18%  Similarity=0.143  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +..++.+..+........|.+|.+.|+++.|+.+....+|..++|.+..
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  359 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG  359 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445566779999999999999998888888777766543

>KOG0569|consensus

Probab=96.78  E-value=0.0072  Score=55.07  Aligned_cols=107  Identities=12%  Similarity=-0.006  Sum_probs=56.1

Q ss_pred             chhhHHHHhcccchHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLI-GITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~   80 (224)
                      |.+.+..+.|+.|||..+.. .+.+...++..... ..     .+ .....+..=++.....+...+....|..|+=|++
T Consensus        76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s-~~-----~~-~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~  148 (485)
T KOG0569|consen   76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS-KS-----AP-SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN  148 (485)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-HH-----hh-hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence            44566777888888866554 33332222221111 00     11 1111222222222233344557889999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccceeehhcccccccc
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFLLLGFVLGDSR  115 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~  115 (224)
                      .|+..-.+......+|-.++..+..-...+.++.|
T Consensus       149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W  183 (485)
T KOG0569|consen  149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW  183 (485)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch
Confidence            99987777666666666655433322222445554

>PRK12382 putative transporter; Provisional

Probab=96.77  E-value=0.0043  Score=54.30  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..+........|.+|.+.|+++.|+.+....+|+.++|.+...
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~  360 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM  360 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444566778899999999999999999999998888876653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.77  E-value=0.0055  Score=54.57  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=58.7

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+.+..+.||.|||+.++.++........ ++. ..   . .....+...+..++..+..+........+..|+.|.+.|
T Consensus        55 ~~~~g~l~~r~G~r~~~~~g~~l~~~g~~-l~~-~~---~-~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~  128 (410)
T TIGR00885        55 AIPAAIFMKKLSYKAGILLGLFLYALGAF-LFW-PA---A-EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA  128 (410)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHH-HH---H-hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH
Confidence            34556777888888877664443332222 111 00   0 011122223333333444455555666788899999999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.+++.+....+|+.++|.+...
T Consensus       129 ~~~~~~~~~~~~lG~~~g~~i~~~  152 (410)
T TIGR00885       129 TRRLNLAQSFNPFGSIIGMVVAQQ  152 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888888876653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.77  E-value=0.0045  Score=52.56  Aligned_cols=46  Identities=20%  Similarity=0.462  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccc
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP  101 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~  101 (224)
                      ++..++.+..+.....+..|.+|.+.|++..|+.+....+++.++|
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3334455556677889999999999999999999999999988876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.73  E-value=0.0088  Score=54.56  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++..++.+........+.+|.+|.+.|+++.++.....++|..+++.+..
T Consensus       115 ~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~  164 (491)
T PRK11010        115 VVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL  164 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444456799999999999999999998888888887775443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.73  E-value=0.0036  Score=53.88  Aligned_cols=39  Identities=13%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             hhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         66 YTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ......+.+|.+|.+.|++..++......+|..+++.+.
T Consensus       114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883       114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999988877777777776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.71  E-value=0.0071  Score=52.91  Aligned_cols=92  Identities=4%  Similarity=-0.092  Sum_probs=51.8

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      .....+.||.|||+.+..+......... +. .+      .++ .+...+.-++..+..+........+..|++|.+.|+
T Consensus        56 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~-l~-~~------~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~  126 (382)
T PRK10091         56 PIIALFSSRYSLKHILLFLVALCVIGNA-MF-TL------SSS-YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT  126 (382)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHH-HH-HH------hCc-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh
Confidence            4445566788888776553332222211 11 11      111 222222323333333333445567789999999999


Q ss_pred             HHHHHHHHHHhhhccccccee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +.+++......++..++|.+.
T Consensus       127 ~~~~~~~~~~~~g~~~g~~l~  147 (382)
T PRK10091        127 AAVAGMVSGMTVANLLGIPLG  147 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccHH
Confidence            999988777777777776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.65  E-value=0.0049  Score=54.40  Aligned_cols=47  Identities=6%  Similarity=-0.054  Sum_probs=36.5

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.+........+.+|++|.+-|+++.|+......++..++|.+...
T Consensus       100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195        100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445678899999999999999999888887777777776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.60  E-value=0.011  Score=53.93  Aligned_cols=93  Identities=13%  Similarity=0.014  Sum_probs=51.1

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhccccc-chHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMF-PTPLRQ   83 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~vR~   83 (224)
                      ....+.||.|||+.++.+......... +. .+      .+. .+..++.-.+..++.+...........+.| |.+.|+
T Consensus        60 ~~G~l~D~~Grk~~l~~~~~~~~~~~~-~~-~~------a~~-~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         60 PMGALGDRIGFKRLLMLGGTLFGLASL-AA-AF------SPT-ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHH-HH-HH------cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            344566778888876664332222111 11 11      111 222222222222333333333444455665 789999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +++|+......+|..++|.+...
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888876644

>PRK12382 putative transporter; Provisional

Probab=96.59  E-value=0.0061  Score=53.31  Aligned_cols=39  Identities=8%  Similarity=-0.049  Sum_probs=29.4

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .....+..|.+|.+.|++++|+......++..++|.+..
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            344567789999999999999877666666666666543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.50  E-value=0.011  Score=51.68  Aligned_cols=95  Identities=9%  Similarity=0.005  Sum_probs=51.9

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.+..+......... .. .+.     + + .+..++..++..+..+...........+.+|.+.|
T Consensus        58 ~~~~g~l~dr~g~k~~~~~~~~~~~~~~~-~~-~~~-----~-~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~  128 (381)
T PRK03633         58 TLLAGYVIKRIGFNRSYYLASLIFAAGCA-GL-GLM-----V-G-FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNR  128 (381)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHh-----c-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            34455667788777765553332222111 11 111     1 1 22222232333333333333344556688899999


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.+++......+|..++|.+...
T Consensus       129 ~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633        129 GRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999888888888877776543

>TIGR00897 2A0118 polyol permease family

Probab=96.49  E-value=0.012  Score=51.95  Aligned_cols=36  Identities=17%  Similarity=0.029  Sum_probs=27.4

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhc-ccccce
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQ-VIAPQV  103 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~-~~~~~~  103 (224)
                      ....+..|.+|.+.|++++|+......+|. ..+|.+
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999999999887777764 355543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.43  E-value=0.0081  Score=52.90  Aligned_cols=91  Identities=14%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+.........+..  +.     + +.. ..++.-++..+..+........+..|.|| +.|+
T Consensus        62 ~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~--~a-----~-~~~-~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~  131 (393)
T PRK09705         62 LAGSWLHQHVSERRSVAISLLLIAVGALMRE--LY-----P-QSA-LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTP  131 (393)
T ss_pred             hhhHHHHHHhCchHHHHHHHHHHHHHHHHHH--HC-----c-chH-HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccch
Confidence            4455667777777776654433332222111  11     1 112 22223333334444444455677889998 6789


Q ss_pred             HHHHHHHHHHhhhccccccee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ..+|+......+|+.+++.+.
T Consensus       132 ~~~g~~~~~~~~g~~~g~~~~  152 (393)
T PRK09705        132 LVMGLWSAALMGGGGLGAAIT  152 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999887665555555555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.43  E-value=0.0065  Score=53.21  Aligned_cols=39  Identities=5%  Similarity=-0.109  Sum_probs=28.7

Q ss_pred             hhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         66 YTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ......+..|.+|.+.|++++++......+|..++|.+.
T Consensus       130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  168 (399)
T PRK05122        130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG  168 (399)
T ss_pred             cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence            344567778999999999999887666666666666544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.42  E-value=0.0072  Score=51.95  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhc
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQ   97 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~   97 (224)
                      +..++.+...+..+...+|++| +.|++..|+.+..+++|+
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       327 ALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            3334445556678899999998 689999999998888764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.41  E-value=0.019  Score=50.62  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=31.2

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +........+.+|.+|.+-|+++.++......+|..+++.+.
T Consensus       109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~  150 (402)
T PRK11902        109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA  150 (402)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence            333345678999999999999999987776666666666543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.41  E-value=0.016  Score=52.78  Aligned_cols=46  Identities=15%  Similarity=-0.015  Sum_probs=32.7

Q ss_pred             HHHHHHhhhhHhhhcccccchHHHH--HHHHHHHHHHhhhccccccee
Q psy14099         59 ITGITSAYTVLYVNTVDMFPTPLRQ--SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt~vR~--~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      .+..+....+.-++.+|+.|.+.|.  .+.++.+....+|+.+++.+.
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g  172 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG  172 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556667789999999998774  567766666677777666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254|consensus

Probab=96.41  E-value=0.007  Score=55.44  Aligned_cols=90  Identities=11%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      +.+++..+.|+.|||..++.+.....+...+..  .      ... .....+.=++..+..++...+..+|.+|+=|+++
T Consensus       105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~--~------a~~-~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~  175 (513)
T KOG0254|consen  105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA--L------APS-WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI  175 (513)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--H------hhh-HHHHHHHHHHhccchhhhhhcchhhHhhcCChhh
Confidence            456667788999999876653222211111011  0      111 1122222233334444555578999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccc
Q psy14099         82 RQSLLAFCSMIGRIGQVIA  100 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~  100 (224)
                      |+.-.+.......+|-.++
T Consensus       176 RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  176 RGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9998887666555555544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.38  E-value=0.011  Score=51.57  Aligned_cols=40  Identities=15%  Similarity=-0.020  Sum_probs=31.5

Q ss_pred             hhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         66 YTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ......+..|.+|.+.|+++.|+......+|..++|.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874        124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567889999999999999988877888877776554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.38  E-value=0.015  Score=52.15  Aligned_cols=38  Identities=13%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhccc-ccceee
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVI-APQVFL  105 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~-~~~~~~  105 (224)
                      ....+..|.+|++.|+++.|+.+..+.+|+.+ +|.+..
T Consensus       367 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        367 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            34567789999999999999999888887654 676554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.24  E-value=0.0021  Score=58.01  Aligned_cols=48  Identities=17%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +..++.+..+.....+.+|.||.+.|++.+|+....+.+|+.+++.+.
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~  178 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA  178 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence            333444444556678999999999999999988777777777776654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.23  E-value=0.018  Score=52.24  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             HHHHHhhhhHhhhcccccch------H---------------HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPT------P---------------LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt------~---------------vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..++.++-..+.+||.      +               .=+...|+..+.|.+|+++.|.++..
T Consensus       357 ~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~  424 (462)
T PRK15034        357 LTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGM  424 (462)
T ss_pred             HHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHH
Confidence            44555677889899999995      0               23456777889999999999976543

>PRK11043 putative transporter; Provisional

Probab=96.21  E-value=0.017  Score=50.69  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ....+.+|.+|.+.|....+.......+++.++|.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  151 (401)
T PRK11043        114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA  151 (401)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999998888888777666677666666543

>KOG2615|consensus

Probab=96.18  E-value=0.0043  Score=54.62  Aligned_cols=85  Identities=13%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHH---HHhhhhHhhhcccccchHHHHH
Q psy14099          8 WMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGI---TSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         8 ~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      .+.|+.|||+.++.++.+.++... ++.        .+. .  . ....+.++..   .+..++.-++.+|+++.+.|+.
T Consensus        90 ~~SD~yGRkpvll~c~~~va~s~l-l~~--------~S~-~--F-~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l  156 (451)
T KOG2615|consen   90 CLSDRYGRKPVLLACLIGVALSYL-LWA--------LSR-N--F-AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPL  156 (451)
T ss_pred             hhhhhhCchHHHHHHHHHHHHHHH-HHH--------HHH-H--H-HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccc
Confidence            345777888877665555444332 221        111 1  1 2222334433   4455678899999999999999


Q ss_pred             HHHHHHHHHhhhcccccceee
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      |++.....-.+|.+++|++-.
T Consensus       157 ~ms~v~~a~~lGfilGPmIGg  177 (451)
T KOG2615|consen  157 GMSLVGTAFGLGFILGPMIGG  177 (451)
T ss_pred             eeeeeehhhhcchhhcchhhh
Confidence            999987777777777777654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.17  E-value=0.011  Score=52.27  Aligned_cols=46  Identities=20%  Similarity=0.042  Sum_probs=34.9

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.+........+.+|.+|.+.|+++.++......+|..++|.+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g  167 (417)
T PRK10489        122 FFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG  167 (417)
T ss_pred             HHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence            3333344556778999999999999999988888888887777654

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.10  E-value=0.021  Score=51.99  Aligned_cols=50  Identities=10%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..++-+..+ ..+.|+...||.+-|+++.|+......+|.++++.+...
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555 788999999999999999999999998888888876654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.09  E-value=0.0097  Score=54.37  Aligned_cols=39  Identities=13%  Similarity=0.058  Sum_probs=25.6

Q ss_pred             hhhHhhhcccccchHH--HHHHHHHHHHHHhhhccccccee
Q psy14099         66 YTVLYVNTVDMFPTPL--RQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~v--R~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ........+|+||.+.  |..+.++.+....+|+.++|.+.
T Consensus       123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~  163 (489)
T PRK10207        123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA  163 (489)
T ss_pred             cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence            3446788999999874  46666666666666665555433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.09  E-value=0.02  Score=50.04  Aligned_cols=39  Identities=10%  Similarity=0.032  Sum_probs=28.7

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .....+..|.+|.+.|+...++......++..++|.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652        115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567889999999998888877767767666665543

>PRK10133 L-fucose transporter; Provisional

Probab=96.07  E-value=0.027  Score=50.56  Aligned_cols=95  Identities=12%  Similarity=0.022  Sum_probs=53.0

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..++........ +.....   . .++ .....+..++..+..+........+..|..|.+.|.
T Consensus        79 ~~~g~l~dr~G~r~~l~~g~~~~~~~~~-l~~~~~---~-a~~-~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~  152 (438)
T PRK10133         79 IPAGILMKKLSYKAGIITGLFLYALGAA-LFWPAA---E-IMN-YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH  152 (438)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHH---h-cCC-HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH
Confidence            4455667888888776664433322221 110000   0 111 222222333333444455555667778888888887


Q ss_pred             HHHHHHHHHHhhhccccccee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ..+++......+|..++|.+.
T Consensus       153 ~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        153 FRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            788888888788888887654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.06  E-value=0.035  Score=50.46  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +..+.......++.||.+.|++++|+....+.+|..+++++.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            556677788899999999999999998766666665554444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.05  E-value=0.013  Score=58.60  Aligned_cols=52  Identities=10%  Similarity=-0.138  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeehh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLLL  107 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~~  107 (224)
                      ++..++.+........+.++++|.+-|+.++|+..+...+|..++|.+....
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l  167 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA  167 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444456789999999999999999999999999998888877643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.02  E-value=0.013  Score=50.04  Aligned_cols=26  Identities=35%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHhhhhccceeeeccCC
Q psy14099        199 KLTIVGSIDGLGALLGSPFCAFISDK  224 (224)
Q Consensus       199 ~~~~~~s~~~~G~~~G~~~~G~lsDr  224 (224)
                      ......+++.++.++|.++.|+++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~l~dr  266 (377)
T TIGR00890       241 FLVLAVSISSIFNGGGRPFLGALSDK  266 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788888999999999999997

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.00  E-value=0.0069  Score=55.03  Aligned_cols=41  Identities=15%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             hhhHhhhcccccchH---HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         66 YTVLYVNTVDMFPTP---LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        66 ~~~~~~~~~ElfPt~---vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ......+.+|+||.+   .|+++.++.+....+|+.++|.+...
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            345678889999875   48888898888888888888876543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10504 putative transporter; Provisional

Probab=95.98  E-value=0.033  Score=49.96  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.+..++.......+..|.+.|+++.|+.+....+|..++|.+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            4444555667788889999999999999998888888888877654

>PRK03699 putative transporter; Provisional

Probab=95.96  E-value=0.022  Score=50.03  Aligned_cols=94  Identities=13%  Similarity=-0.021  Sum_probs=52.8

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.+||+.+..........+. ++. .    . ++ ... ..+..++..++....+.....+..|..|.+ |
T Consensus       258 ~~~~g~l~dr~~~~~~l~~~~~~~~~~~~-~~~-~----~-~~-~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~  327 (394)
T PRK03699        258 MWIFSFIVRFFDLQRILTVLAGLALVLMY-LFV-N----T-DD-PSH-LLYAILGLGFFSSAIYTTIITLGSQQTKVA-S  327 (394)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHH-HHH-H----c-CC-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C
Confidence            44556667888877765543222222111 111 1    1 11 122 222333333444555566667778888754 5


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..|+....+.+|+.++|.+...
T Consensus       328 ~~~~g~~~~~~~~g~~i~p~~~G~  351 (394)
T PRK03699        328 PKLVNFILTCGTIGTMLTFVVTSP  351 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            677888888889999999987654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.95  E-value=0.036  Score=49.04  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccc------
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFP------   78 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP------   78 (224)
                      +...+.||.|||+.+..+....+..+. .. .+.     ++ ..+...+..++..+..+..+...+.+.+|.-|      
T Consensus       276 ~~~~l~~r~g~~~~~~~~~~~~~~~~~-~~-~~~-----~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  347 (437)
T TIGR00792       276 LFPRLVKKFGRKILFAGGILLMVLGYL-IF-FFA-----GS-NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKT  347 (437)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHH-HH-HHc-----ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence            344567788877765554332222222 11 111     11 12222333334444455555667788888754      


Q ss_pred             -hHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         79 -TPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        79 -t~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                       .+.+++..|+.+....+|+.+++.+...
T Consensus       348 ~~~~~G~~~~~~~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       348 GVRAEGLVYSVRTFVRKLGQALAGFLVGL  376 (437)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3456777888888888888888876653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=95.93  E-value=0.017  Score=52.10  Aligned_cols=37  Identities=5%  Similarity=-0.206  Sum_probs=27.8

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      .+...+..|.|| +.|+++.|+.+....+|+.++|.+.
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~  163 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLN  163 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHH
Confidence            345567788887 7899999998887777777666544

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.83  E-value=0.015  Score=51.57  Aligned_cols=45  Identities=9%  Similarity=0.081  Sum_probs=31.2

Q ss_pred             HHHhhhhHhhhcccccchHHHHHHHHH-HHHHHhhhcccccceeeh
Q psy14099         62 ITSAYTVLYVNTVDMFPTPLRQSLLAF-CSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        62 ~~~~~~~~~~~~~ElfPt~vR~~g~g~-~~~~~~~~~~~~~~~~~~  106 (224)
                      ..........+.+|.+|.+.|+++.++ .+....+|+.++|.+...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~  374 (420)
T PRK09528        329 VPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN  374 (420)
T ss_pred             HHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence            333344556888999999999988766 345566777777766543

>TIGR00896 CynX cyanate transporter

Probab=95.82  E-value=0.027  Score=48.49  Aligned_cols=90  Identities=14%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.+..+......... ..  ..     ++  .+..++..++..+..+........+..|.+| +.|+
T Consensus        53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~--~~-----~~--~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~  121 (355)
T TIGR00896        53 PLAPWLARRFGEERSVAAGLLLIAAGIL-IR--SA-----PG--TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVG  121 (355)
T ss_pred             HhHHHHHHHhCchHHHHHHHHHHHHHHH-HH--Hh-----cc--HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhh
Confidence            3455566777777765553332222111 11  11     11  2222222233333333333345567788888 5789


Q ss_pred             HHHHHHHHHHhhhccccccee
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +.+++......+|..++|.+.
T Consensus       122 ~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896       122 LMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988777777776666544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.78  E-value=0.038  Score=50.45  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=67.1

Q ss_pred             chhhHHHHhcccchH--HHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccch
Q psy14099          2 SRIVCIWMDHVVFRQ--TLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPT   79 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt   79 (224)
                      |.++..+++||+|-|  ++++..+....++.....+++..... .....+.+.++.++..++.+..++..=.+.+|+-|.
T Consensus       333 Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~-g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~  411 (477)
T PF11700_consen  333 GALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF-GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP  411 (477)
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc-CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence            455667888888877  55444333222111101111110000 111233444555555666777778788999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccccceeehh
Q psy14099         80 PLRQSLLAFCSMIGRIGQVIAPQVFLLL  107 (224)
Q Consensus        80 ~vR~~g~g~~~~~~~~~~~~~~~~~~~~  107 (224)
                      ...+...|+....++..++++|+++...
T Consensus       412 g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  412 GREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988763

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00897 2A0118 polyol permease family

Probab=95.61  E-value=0.065  Score=47.20  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             HhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         69 LYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        69 ~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+|+.|. .|+++.|+.+....+++.++|.+...
T Consensus       336 ~~~~~~~~~~~-~~g~~~g~~~~~~~lg~~~gp~i~g~  372 (402)
T TIGR00897       336 LAAVFPTLAPK-HKGAAMSVLNLSAGLSAFLAPAIAVL  372 (402)
T ss_pred             HHHHHHhhCcc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788775 79999999999999999999987654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.56  E-value=0.022  Score=56.82  Aligned_cols=43  Identities=12%  Similarity=-0.045  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcc
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQV   98 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~   98 (224)
                      ++..++.+........+..|..|.+.|++++|+.+.+..+++.
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~  372 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML  372 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence            3334444445556788999999999999999987766655553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.47  E-value=0.02  Score=50.82  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             HHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         62 ITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        62 ~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .++.+++...+.++-||.+.+++++|+.- .|.+|..++.++.+
T Consensus       118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223         118 AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            45677788899999999999999999977 77777666555544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.46  E-value=0.029  Score=50.91  Aligned_cols=47  Identities=11%  Similarity=0.040  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +..++.....+..+.+.+|+.| +.|++..|+.+..+.+|+.++|++.
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~  403 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF  403 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence            3334444455567788888866 7899999999888889998888764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.45  E-value=0.04  Score=50.43  Aligned_cols=40  Identities=8%  Similarity=-0.075  Sum_probs=28.5

Q ss_pred             hhHhhhcccccchH--HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTP--LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~--vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+.+|+||.+  .|..+.++.+....+|+.++|.+...
T Consensus       131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~  172 (500)
T PRK09584        131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW  172 (500)
T ss_pred             CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            34567889999864  34456777777888888888876643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.38  E-value=0.011  Score=52.56  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      ++++..++++|+|-|+++..++.......+  +..+.     ..  .....++.++..++.++.++..=.|.+++.|.+-
T Consensus       304 g~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~--~~~~~-----~~--~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k  374 (438)
T COG2270         304 GAIIAGFLDERFGSKPVLMIGLVILSIAAL--YLIFL-----EG--ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK  374 (438)
T ss_pred             HHHHHHHHHHHhCCceeehHHHHHHHHHHH--HHHHc-----cc--cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence            567788999999988776665544333222  11111     11  2234445555566677788888899999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccceeeh
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      -++.+|+.+..+|.++.++|+++..
T Consensus       375 ~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         375 EGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             ccceeehhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999998764

>PTZ00207 hypothetical protein; Provisional

Probab=95.36  E-value=0.1  Score=48.87  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcc
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQV   98 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~   98 (224)
                      +..+........+.|| +.|++.+|+......+|+.
T Consensus       135 ~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsa  169 (591)
T PTZ00207        135 MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSA  169 (591)
T ss_pred             HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHH
Confidence            3334455667788998 7899999998777777775

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.33  E-value=0.15  Score=47.07  Aligned_cols=97  Identities=14%  Similarity=0.042  Sum_probs=53.1

Q ss_pred             hhHHHHhcccchHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGIT-GITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      +.+..+.||..||++++..-. .++.... +.+...  .  ..-..+..+++.++...+.........+..+|+.|.+--
T Consensus        63 l~aG~laDr~drrrili~~~~~~~~~~~~-L~~l~~--~--~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L  137 (524)
T PF05977_consen   63 LFAGALADRFDRRRILILSQLLRALVALL-LAVLAF--F--GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDL  137 (524)
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHH--h--CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhH
Confidence            455666777777777655222 1111111 111110  1  111233344444444443333344567999999999998


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ..+.++.+....+...++|.+..
T Consensus       138 ~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen  138 PAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHhccchHHH
Confidence            88888877666666666666554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.29  E-value=0.08  Score=48.34  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             hhHHHHhcccchHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLI-GITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      +++.+.|....||+++.. .+.+.+..+.+.+   .    ++ +..+...++.+++..++.........|++|+=+.+-+
T Consensus        89 ~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~---v----~~-~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~  160 (477)
T PF11700_consen   89 FLGAIADYGGRRKRFLLIFTLLGVLATALLWF---V----SP-GQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPR  160 (477)
T ss_pred             HHHHHHcccccchHHHHHHHHHHHHHHHHHHH---h----Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChh
Confidence            456666766667776655 3333333222111   1    12 2234445555666666666666667899999988887


Q ss_pred             --------------------------HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 --------------------------QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 --------------------------~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                                                ++-.|.....|.+|+.+.-.+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~  210 (477)
T PF11700_consen  161 VRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL  210 (477)
T ss_pred             hhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence                                      888888888888888876655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=95.26  E-value=0.063  Score=48.97  Aligned_cols=42  Identities=12%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             HHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         63 TSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        63 ~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +...+..+.+..++.|.+.+++..|+.+....+|+.+.+.+.
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~  372 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA  372 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455678888888888889999988887777776555443

>PRK03545 putative arabinose transporter; Provisional

Probab=95.25  E-value=0.076  Score=46.43  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ....+..|..| +.|++++|+.+....+|..++|.+..
T Consensus       314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888 58899999888887777777777654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=95.23  E-value=0.1  Score=44.94  Aligned_cols=42  Identities=12%  Similarity=0.248  Sum_probs=28.4

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccc
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQ  102 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~  102 (224)
                      +..+..+.....+..|.+| +.|+++.++.+..... ++..+|.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~  354 (385)
T TIGR00710       312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL  354 (385)
T ss_pred             HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            3344455567788889999 5689999987776654 4444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.09  E-value=0.00065  Score=60.57  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             chhhHHHHhcccchHHHHHHHHHH-HHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITG-ITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~   80 (224)
                      |.+++..+.||.|||+.++.+... .+..+. ..  +   .+.. ...+...+.-++..+..++......+|..|.-|.+
T Consensus        62 G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~-~~--~---~~~~-~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~  134 (451)
T PF00083_consen   62 GALIFGFLADRYGRKPALIISALLMIIGSIL-IA--F---APSY-NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK  134 (451)
T ss_pred             ccccccccccccccccccccccccccccccc-cc--c---cccc-ccccccccccccccccccccccccccccccccccc
Confidence            556666677888888775552222 111111 00  1   1100 01122222223333445556667899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccceee
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .|+...++......+|..++..+..
T Consensus       135 ~R~~~~~~~~~~~~~G~~~~~~~~~  159 (451)
T PF00083_consen  135 HRGFLSSLFQLFWALGILLASLIGY  159 (451)
T ss_pred             ccccccccccccccccccccccccc
Confidence            9998888777666666666665443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.04  E-value=0.1  Score=45.93  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhccccc-chHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMF-PTPL   81 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-Pt~v   81 (224)
                      .++...+.||.+||+.+..+.......+. ... ..     +.... ...  .++..+.....+........+.+ |.+.
T Consensus       257 ~~~~g~l~~r~~~~~~~~~~~~l~~~~~~-~~~-~~-----~~~~~-~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~  326 (393)
T PRK09705        257 ALLMPAMARHQDRRKLLMLALVLQLVGFC-GFI-WL-----PLQLP-VLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI  326 (393)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHH-HHH-Hc-----cchHH-HHH--HHHHHHhccchHHHHHHHHHhhcCCHHH
Confidence            44556677888888765554332222221 111 11     11111 111  12222223333344444555666 5789


Q ss_pred             HHHHHHHHHHHHhhhcccccceeeh
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      |++..|+.+..+.+++.++|.+...
T Consensus       327 ~g~~~g~~~~~~~~~~~~gp~~~G~  351 (393)
T PRK09705        327 AGKLVAFMQGIGFIIAGLAPWFSGV  351 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.02  E-value=0.11  Score=47.39  Aligned_cols=96  Identities=11%  Similarity=-0.054  Sum_probs=54.9

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      +...+.||.|||+.+..+.......+..+.  ..   ..... .+......++..+..+...........+..|.+.|+.
T Consensus       314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~--~~---~~~~~-~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~  387 (495)
T PRK14995        314 IAGILVSRLGLRLVATGGMALSALSFYGLA--MT---DFSTQ-QWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA  387 (495)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHH--Hh---cCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence            344566777777765554332222111111  11   11111 2222223333344445555556677778899999999


Q ss_pred             HHHHHHHHHhhhcccccceeeh
Q psy14099         85 LLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +.++.+....+|+.+++.+...
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~  409 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGL  409 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888888766543

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.01  E-value=0.1  Score=44.88  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=24.7

Q ss_pred             hhHhhhcccccchHHHHHH--HHHHHHHHhhhcccccceee
Q psy14099         67 TVLYVNTVDMFPTPLRQSL--LAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g--~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .....+..|..|.+.|..+  .+.......+|..++|.+..
T Consensus       106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~  146 (375)
T TIGR00899       106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF  146 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence            3455677888887777654  45555555666666665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.99  E-value=0.052  Score=48.45  Aligned_cols=37  Identities=16%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             hhhcccccchHHHHHHHHHHHHHHhhhc-ccccceeeh
Q psy14099         70 YVNTVDMFPTPLRQSLLAFCSMIGRIGQ-VIAPQVFLL  106 (224)
Q Consensus        70 ~~~~~ElfPt~vR~~g~g~~~~~~~~~~-~~~~~~~~~  106 (224)
                      .....|.+|.+.|++++|+.+..+.+++ .++|.+...
T Consensus       367 ~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~  404 (438)
T TIGR00712       367 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  404 (438)
T ss_pred             HHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHH
Confidence            3467899999999999999988888875 567876643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.98  E-value=0.044  Score=47.85  Aligned_cols=48  Identities=10%  Similarity=0.052  Sum_probs=35.2

Q ss_pred             HHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         59 ITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .++.+........+..|..|.+.|++.+++.+....+|..++|.+...
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~  369 (408)
T PRK09874        322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAA  369 (408)
T ss_pred             HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHH
Confidence            333444444555666788899999999999888888888888876643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.84  E-value=0.093  Score=49.15  Aligned_cols=89  Identities=16%  Similarity=0.099  Sum_probs=46.6

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      +..-+.|.+|||..++.+....++... +..       ..+.... .++...+..+. .+......+.++|+.|.+.|..
T Consensus        97 ~~G~LSDlfGRr~~~i~g~~l~vvG~I-v~a-------tA~~~~~-~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~  166 (599)
T PF06609_consen   97 FVGRLSDLFGRRYFFIIGSLLGVVGSI-VCA-------TAQNMNT-FIAGMVLYGVG-AGVQELAALAISELVPNKWRGL  166 (599)
T ss_pred             hhHHHHHHhcchHHHHHHHHHHHhHHH-Hhh-------cCCcHHH-HHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhh
Confidence            345567899999887764332222221 110       0222222 22332333332 2233345667899999999988


Q ss_pred             HHHHHHHHHhhhcccccce
Q psy14099         85 LLAFCSMIGRIGQVIAPQV  103 (224)
Q Consensus        85 g~g~~~~~~~~~~~~~~~~  103 (224)
                      +.++.....-+....+|++
T Consensus       167 ~~~~~~~~~i~~~~~~~~i  185 (599)
T PF06609_consen  167 GLAIASIPFIITTWISPLI  185 (599)
T ss_pred             HhHHHHHHHHhhhcccHHH
Confidence            8877654443333344443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.79  E-value=0.13  Score=45.51  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=34.2

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+..|..|.+.|+++.|+.+....+|+.++|.+...
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence            3456888899999999999999988888898889987765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.65  E-value=0.12  Score=46.87  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccc-----cchH
Q psy14099          6 CIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDM-----FPTP   80 (224)
Q Consensus         6 ~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El-----fPt~   80 (224)
                      ...+.||.|||..++.+....++.....+...  ..+ + +..+..++..++..+..+..+...+.+.+|+     ++|.
T Consensus       286 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG  361 (473)
T PRK10429        286 FPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAA-P-HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLG  361 (473)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcC
Confidence            34566788888776543322121111111100  011 1 2223333333344445555666678888998     7788


Q ss_pred             HHHHHHHH--HHHHHhhhcccccceee
Q psy14099         81 LRQSLLAF--CSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        81 vR~~g~g~--~~~~~~~~~~~~~~~~~  105 (224)
                      .|..|+.+  ...+..++..+++.+..
T Consensus       362 ~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        362 IRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777655  45566777777766553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=94.50  E-value=0.25  Score=44.44  Aligned_cols=51  Identities=12%  Similarity=0.095  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..+..+......+....|.+|.+.|++++|+.+....+|+.++|.+...
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~  391 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR  391 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence            333344444555677888999999999999999999999999999987764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.38  E-value=0.23  Score=43.38  Aligned_cols=47  Identities=9%  Similarity=0.027  Sum_probs=34.6

Q ss_pred             HHHHHhhhhHhhhcccccch-HHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPT-PLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt-~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..+...+.+..+..+. +.|++..++.+....+|..++|.+...
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~  362 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGY  362 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666666665 899999999999999999888876643

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.36  E-value=0.064  Score=47.00  Aligned_cols=91  Identities=7%  Similarity=-0.034  Sum_probs=48.9

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHH
Q psy14099          6 CIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSL   85 (224)
Q Consensus         6 ~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g   85 (224)
                      ...+.||.|||+.+..+.....+... .+. .   .  ++  .+......++..+...........+..|.+|.+.|+++
T Consensus       274 ~g~l~~r~g~~~~l~~~~~l~~l~~~-~~~-~---~--~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~  344 (396)
T TIGR00882       274 APLIINRIGAKNALLIAGTIMSVRII-GSS-F---A--TT--ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATI  344 (396)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHH-HHH-h---c--CC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence            34567787777765553332222221 111 1   1  11  22222222333333333334556788899999999987


Q ss_pred             HHH-HHHHHhhhcccccceee
Q psy14099         86 LAF-CSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        86 ~g~-~~~~~~~~~~~~~~~~~  105 (224)
                      .++ .+....+|+.++|.+..
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G  365 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAG  365 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHH
Confidence            777 35666777777776554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=94.28  E-value=0.15  Score=45.34  Aligned_cols=92  Identities=14%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             chhhHHHHhcccchHHHHHH-HHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLI-GITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~   80 (224)
                      |.+++.++.||.++|+++.. .+.+.+..+.  .. .      .++.. . .....+..++.+..|...+....+..+.+
T Consensus       285 GR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll--~~-~------~~~~~-~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~  353 (410)
T TIGR00885       285 SRFIGTWLISYLAAHKVLMAYAIIGMALCLG--SI-F------AGGHV-G-LYCLTLCSAFMSLMFPTIYGIALKGLGQD  353 (410)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH--HH-H------cCChH-H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            46677777788877766544 3333322221  11 1      11211 2 23333444667888888999999999988


Q ss_pred             HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .+..+.++....  +|+.+.|.+...
T Consensus       354 ~~~~s~~l~~~~--~Gga~~p~l~G~  377 (410)
T TIGR00885       354 TKYGAAGLVMAI--IGGGIVPPLQGF  377 (410)
T ss_pred             hhhhHHHHHHHH--hccchHHHHHHH
Confidence            876666665544  888888886654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.20  E-value=0.23  Score=44.45  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceee
Q psy14099         48 VVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFL  105 (224)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~  105 (224)
                      ..+..++.++..|+..+..-.+-+...|.=|.+--+++.|+...++.+ |+..+.....
T Consensus       346 ~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g  404 (448)
T COG2271         346 YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG  404 (448)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce
Confidence            344444555555666666666788999999999999999999888888 6666665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.16  E-value=0.16  Score=44.90  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=25.9

Q ss_pred             hhHhhhccccc-chHHHHHHHHHHHHHHhhhcccccc
Q psy14099         67 TVLYVNTVDMF-PTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        67 ~~~~~~~~Elf-Pt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      .+...+.+|+. |.+.|++..++....+.+|+.+++.
T Consensus       118 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~  154 (437)
T TIGR00792       118 IPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAV  154 (437)
T ss_pred             ccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888987 5688999888877777666655443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=94.11  E-value=0.19  Score=43.04  Aligned_cols=93  Identities=6%  Similarity=-0.088  Sum_probs=52.9

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      |.+++..+.||+++|+++..+....+.... +.. .      .+... .. ...++..++.+..+........+.+|.+.
T Consensus       194 Gr~~~~~l~~r~g~~~~l~~~~~l~~~~~~-l~~-~------~~~~~-~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~  263 (310)
T TIGR01272       194 GRFIGSAVMPMISQGRYLAFNAFLAVLLSI-GAA-L------THGYV-AM-WFVLALGLFNSIMFPTIFSLALNALGRHT  263 (310)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-HHH-H------cCCHH-HH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            456677778888876665443322222111 111 1      11111 12 22333446677778777888888888653


Q ss_pred             HHHHHHHHHHHHhhhcccccceeeh
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                       +++.++. ..+.+|+.+.|.+...
T Consensus       264 -~~asai~-~~~~~Gg~i~P~l~G~  286 (310)
T TIGR01272       264 -SQGSGIL-CLAIVGGAIVPLLQGS  286 (310)
T ss_pred             -hhhHHHH-HHHHhcchHHHHHHHH
Confidence             3455553 5778999999976643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11043 putative transporter; Provisional

Probab=94.11  E-value=0.27  Score=43.06  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=32.1

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..+..+.....+..|.+|. .|+++.|+.+..+..++..++.+...
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        308 AANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566677788885 69999999888877777666665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=93.56  E-value=0.15  Score=45.36  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +...++.+...+.++-..+-+||.+.. ...|+..+.|.+|++..|..+..
T Consensus       322 l~l~~~~G~GnGsvfk~Ip~if~~~~G-~v~G~vga~G~lGGf~lp~~~g~  371 (417)
T COG2223         322 LALFVFAGLGNGSVFKMIPVIFPKETG-AVTGIVGAIGGLGGFFLPLAFGV  371 (417)
T ss_pred             HHHHHHhccCcchheeechHHHHhhhh-HHHHHHHHhccccccchhHHHHH
Confidence            333445566777899999999998554 46788999999999888876653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=93.54  E-value=0.41  Score=42.58  Aligned_cols=89  Identities=10%  Similarity=-0.004  Sum_probs=51.2

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      .+...+.+|..||++++..+...+..-.+..  +.     + + -...++.=++..+..+..++....+.+++=|.+.|+
T Consensus        66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a--lA-----p-~-f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~  136 (394)
T COG2814          66 PLLALLTGRLERRRLLLGLLALFIVSNLLSA--LA-----P-S-FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG  136 (394)
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHHHHHHHH--Hh-----c-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence            3445567888888887663332222111011  10     1 1 111222223333445566788889999999999999


Q ss_pred             HHHHHHHHHHhhhccccc
Q psy14099         84 SLLAFCSMIGRIGQVIAP  101 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~  101 (224)
                      +++++....-.++.+++.
T Consensus       137 ~Aiaiv~~G~tlA~v~Gv  154 (394)
T COG2814         137 RALALVFTGLTLATVLGV  154 (394)
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            999997766555554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=93.38  E-value=0.52  Score=41.18  Aligned_cols=90  Identities=9%  Similarity=-0.081  Sum_probs=50.2

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHH
Q psy14099          6 CIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSL   85 (224)
Q Consensus         6 ~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g   85 (224)
                      ...+.||.|+|+++..+......... .. ..      .+ ..+......++..+.++........|..+. |.+.|+++
T Consensus       260 ~~~l~~r~g~~~~l~~~~~~~~~~~~-~~-~~------~~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~  329 (382)
T TIGR00902       260 SNKLFQNCSARDLLLISAIACVGRWA-II-GA------IE-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL  329 (382)
T ss_pred             hHHHHhhCCHHHHHHHHHHHHHHHHH-HH-Hh------Hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence            33455777777766554333332222 11 01      11 223334444555555555666667788888 99999999


Q ss_pred             HHHHHH-HHhhhcccccceee
Q psy14099         86 LAFCSM-IGRIGQVIAPQVFL  105 (224)
Q Consensus        86 ~g~~~~-~~~~~~~~~~~~~~  105 (224)
                      .++.+. ...+|..++|.+..
T Consensus       330 q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       330 QALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            998654 33455656665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=93.31  E-value=0.4  Score=41.34  Aligned_cols=34  Identities=15%  Similarity=0.285  Sum_probs=21.7

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHh-hhcccccc
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGR-IGQVIAPQ  102 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~-~~~~~~~~  102 (224)
                      ....+..|.+| +.|+++.++.+.... +++..+++
T Consensus       307 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~  341 (377)
T PRK11102        307 NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL  341 (377)
T ss_pred             HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888 788888888655432 44444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.96  E-value=0.038  Score=52.16  Aligned_cols=42  Identities=7%  Similarity=-0.006  Sum_probs=34.9

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .+.....|..|.+|.+.|+..+|+......+|..+++.+...
T Consensus       189 ~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~  230 (633)
T TIGR00805       189 IFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF  230 (633)
T ss_pred             chhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344567999999999999999999998888888888776543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00896 CynX cyanate transporter

Probab=92.59  E-value=0.52  Score=40.46  Aligned_cols=48  Identities=15%  Similarity=0.094  Sum_probs=31.7

Q ss_pred             HHHHHHhhhhHhhhcc-cccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         59 ITGITSAYTVLYVNTV-DMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~-ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .++.+..+........ +..|.+.|++..++.+..+.+++.++|.+...
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444 44557788899999888888888888876643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09669 putative symporter YagG; Provisional

Probab=92.47  E-value=0.38  Score=42.94  Aligned_cols=42  Identities=17%  Similarity=0.077  Sum_probs=27.5

Q ss_pred             HHHHhhhhHhhhccccc-chHHHHHHHHHHHHHHhhhcccccc
Q psy14099         61 GITSAYTVLYVNTVDMF-PTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        61 ~~~~~~~~~~~~~~Elf-Pt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      +++....+.....+|+. +.+-|.+..++....+.+|+.+++.
T Consensus       122 ~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~  164 (444)
T PRK09669        122 VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV  164 (444)
T ss_pred             HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443345568889988 4577888777777666666665554

>KOG3764|consensus

Probab=92.32  E-value=0.49  Score=42.23  Aligned_cols=90  Identities=13%  Similarity=0.005  Sum_probs=55.0

Q ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH-HHHH
Q psy14099          7 IWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL-RQSL   85 (224)
Q Consensus         7 ~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v-R~~g   85 (224)
                      ..+.||+|+|..+++++..+...-. ++. +      .+... ...+.=.+-.+..+..........+..||.+. |++.
T Consensus       127 G~l~~~iGy~ipm~~Gl~vmf~sTi-lFa-f------g~sy~-~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~v  197 (464)
T KOG3764|consen  127 GNLIDRIGYKIPMVAGLFVMFLSTI-LFA-F------GNSYP-MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSV  197 (464)
T ss_pred             hhhHHHhccccHHHHHHHHHHHHHH-HHH-H------cchhH-HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHH
Confidence            3456799999988876655443322 221 1      22222 11111122223334445566788999999987 6999


Q ss_pred             HHHHHHHHhhhcccccceee
Q psy14099         86 LAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        86 ~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +|....+..+|-.++|-+-.
T Consensus       198 mGialgfislG~lvgPpfGG  217 (464)
T KOG3764|consen  198 MGIALGFISLGVLVGPPFGG  217 (464)
T ss_pred             HHHHHHHHhccceecCCccc
Confidence            99998888888888776443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.30  E-value=0.98  Score=39.30  Aligned_cols=42  Identities=10%  Similarity=0.103  Sum_probs=30.2

Q ss_pred             hhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         65 AYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        65 ~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .+.....+..|..|.+.++...+..+....+|+.++|.+...
T Consensus       302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~  343 (381)
T PRK03633        302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM  343 (381)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566778899998877776776666667888888876654

>PRK09669 putative symporter YagG; Provisional

Probab=92.23  E-value=0.59  Score=41.75  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=48.8

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH-----
Q psy14099          6 CIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP-----   80 (224)
Q Consensus         6 ~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~-----   80 (224)
                      ...+.||.|||..+..+..........++  +.   + + +..+...+..++..+..+......+...+|..+-.     
T Consensus       284 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~--~~---~-~-~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G  356 (444)
T PRK09669        284 SERLLGKFDRVRAFKWTIVAFVILSALIF--FI---P-P-SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG  356 (444)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHH--Hh---C-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence            34566777887765553332221111011  11   1 1 22333333444445555566667888888887632     


Q ss_pred             HH--HHHHHHHHHHHhhhcccccceee
Q psy14099         81 LR--QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        81 vR--~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      .|  +...|+.+.+..+|..++|.+..
T Consensus       357 ~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        357 RRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            23  34456666666777777776554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=92.20  E-value=0.57  Score=41.99  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++.++........+....|..|. .+++..|+.+..+.+++.++|++...
T Consensus       370 l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~  418 (465)
T TIGR00894       370 LANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGN  418 (465)
T ss_pred             HHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            33333333444455666777776 89999999999999999999987654

>KOG1330|consensus

Probab=92.07  E-value=0.12  Score=46.72  Aligned_cols=93  Identities=16%  Similarity=0.005  Sum_probs=57.2

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .-++.++.||..||.++..++..-.++..  ...+       ...-|..++.=.+..++-+....+.....+..||-..|
T Consensus        85 sPl~gyLadryNR~~v~~vG~~iW~~Av~--~~~f-------s~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R  155 (493)
T KOG1330|consen   85 SPLFGYLADRYNRKRVIAVGIFIWTLAVF--ASGF-------SNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR  155 (493)
T ss_pred             HHHHHHHHhhcCcceEEeeHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence            34567778899999887665443332211  1111       11223333332222233334445678999999999999


Q ss_pred             HHHHHHHHHHHhhhccccccee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++++++-+...-+|+.++-.+.
T Consensus       156 s~~~~ify~~ipvGsglG~vvg  177 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVG  177 (493)
T ss_pred             hHHHHHhhhhcccccceeEEee
Confidence            9999999998888877665443

>PRK15011 sugar efflux transporter B; Provisional

Probab=92.00  E-value=0.7  Score=40.52  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             hHhhhcccccchHHHHHH--HHHHHHHHhhhcccccceee
Q psy14099         68 VLYVNTVDMFPTPLRQSL--LAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g--~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ....+.+|..|.+-|..+  .++......+|..++|.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~  164 (393)
T PRK15011        125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY  164 (393)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            345566676665545332  25555566667777776554

>PRK11462 putative transporter; Provisional

Probab=91.40  E-value=0.88  Score=41.13  Aligned_cols=47  Identities=11%  Similarity=-0.005  Sum_probs=33.9

Q ss_pred             HHHHHHHHhhhhHhhhcccccc-hHHHHHHHHHHHHHHhhhcccccce
Q psy14099         57 IGITGITSAYTVLYVNTVDMFP-TPLRQSLLAFCSMIGRIGQVIAPQV  103 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfP-t~vR~~g~g~~~~~~~~~~~~~~~~  103 (224)
                      +...+++....+.....+|+-+ .+-|++..++-...+.+|+.+++.+
T Consensus       118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555567788889888 6889999998888888777666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=91.06  E-value=0.77  Score=41.52  Aligned_cols=42  Identities=7%  Similarity=0.066  Sum_probs=26.8

Q ss_pred             HHHHHHhhhhHhhhccccc-chHHHHHHHHHHHHHHhhhcccc
Q psy14099         59 ITGITSAYTVLYVNTVDMF-PTPLRQSLLAFCSMIGRIGQVIA  100 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~Elf-Pt~vR~~g~g~~~~~~~~~~~~~  100 (224)
                      ..+++....+.....+|+- ..+-|.+..++....+.+|+.+.
T Consensus       117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429        117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455678889988 47889887777555555554443

>PRK10054 putative transporter; Provisional

Probab=90.80  E-value=0.92  Score=39.93  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             hhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         67 TVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        67 ~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .....+..+.-|++.|++..+..+ .+.+|..++|.+...
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            345678889999999999888643 667888888876644

>KOG2532|consensus

Probab=90.62  E-value=1.2  Score=40.50  Aligned_cols=40  Identities=13%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcc
Q psy14099         59 ITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQV   98 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~   98 (224)
                      .+..+..+..+....+.-.|..-|++..++.+....+|.+
T Consensus       139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v  178 (466)
T KOG2532|consen  139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI  178 (466)
T ss_pred             HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677889999999999999999987665544444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=90.47  E-value=0.22  Score=44.26  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhHhhhcccccch-HHHHHHHHHHHHHHhhhcccccc
Q psy14099         59 ITGITSAYTVLYVNTVDMFPT-PLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        59 ~~~~~~~~~~~~~~~~ElfPt-~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      .++++....+..+..+|+-|. +-|.+..+.....+.+|+.+...
T Consensus       114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~  158 (428)
T PF13347_consen  114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASF  158 (428)
T ss_pred             HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            444444444667899999995 67888888877777776654333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=90.27  E-value=1.3  Score=40.96  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHH
Q psy14099         51 RQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIG   93 (224)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~   93 (224)
                      ..+..++..++............-+.-|.++|++.+++..+..
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~  352 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVF  352 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHH
Confidence            3333344444444455556677889999999999999865444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=89.76  E-value=1.8  Score=38.65  Aligned_cols=48  Identities=13%  Similarity=0.009  Sum_probs=34.7

Q ss_pred             HHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHH-hhhcccccceee
Q psy14099         58 GITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIG-RIGQVIAPQVFL  105 (224)
Q Consensus        58 ~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~-~~~~~~~~~~~~  105 (224)
                      -...++..+.....|..|..|.+.|+++.++.+... -+|+.++.++..
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            444555566677899999999999999999976543 466666555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=89.63  E-value=3.4  Score=36.24  Aligned_cols=23  Identities=9%  Similarity=-0.012  Sum_probs=17.1

Q ss_pred             HHHhhhhHhhhcccccchHHHHH
Q psy14099         62 ITSAYTVLYVNTVDMFPTPLRQS   84 (224)
Q Consensus        62 ~~~~~~~~~~~~~ElfPt~vR~~   84 (224)
                      ....+.....+..+.+|.+.++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~  343 (402)
T PRK11902        321 TAAFVALLMALCNRSFSATQYAL  343 (402)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHH
Confidence            44445667889999999887765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=89.37  E-value=2.6  Score=36.69  Aligned_cols=89  Identities=9%  Similarity=-0.053  Sum_probs=42.4

Q ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHH
Q psy14099          6 CIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSL   85 (224)
Q Consensus         6 ~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g   85 (224)
                      ...+.||.++|..+..++......+. .. ..      .+ ..+..++..++..+...........+..+.- ...+++.
T Consensus       260 ~g~l~~r~~~~~~l~~~~~~~~~~~~-~~-~~------~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~  329 (382)
T PRK11128        260 SNRLFRRWSARDLLLLSAICGVVRWG-LM-GS------TT-ALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRL  329 (382)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHH-HH-Hh------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHH
Confidence            33556777777765553333222222 11 11      11 2333333344444444444445556777774 4446777


Q ss_pred             HHHHHHHH-hhhccccccee
Q psy14099         86 LAFCSMIG-RIGQVIAPQVF  104 (224)
Q Consensus        86 ~g~~~~~~-~~~~~~~~~~~  104 (224)
                      .++.+... .+|..++|.+.
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~  349 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLS  349 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77765333 23334555444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=89.01  E-value=1.2  Score=38.70  Aligned_cols=33  Identities=9%  Similarity=-0.144  Sum_probs=20.3

Q ss_pred             hhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         71 VNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        71 ~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ....+.+|.+.++.+.  .+....+|+.++|.+..
T Consensus       313 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G  345 (382)
T PRK10091        313 LLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGG  345 (382)
T ss_pred             HHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhH
Confidence            3445566666655543  45566778888887664

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=88.65  E-value=2.4  Score=32.67  Aligned_cols=81  Identities=9%  Similarity=-0.070  Sum_probs=49.0

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      ++++..+.++.|.|+.++.+..+-+. ....+  +   .  ++  .+.......+..+..+..|...-.|..|.-..+.|
T Consensus        54 ~l~~P~iv~~lg~K~sm~lg~~~y~~-y~~~~--~---~--~~--~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~  123 (156)
T PF05978_consen   54 CLFAPSIVNKLGPKWSMILGSLGYAI-YIASF--F---Y--PN--SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI  123 (156)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHH-HHHHH--H---h--hh--HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence            45667778999999887764433222 11011  1   1  21  23334444455566777787777888888888888


Q ss_pred             HHHHHHHHHHH
Q psy14099         83 QSLLAFCSMIG   93 (224)
Q Consensus        83 ~~g~g~~~~~~   93 (224)
                      ++-.|+--.+.
T Consensus       124 ~~~~~ifw~i~  134 (156)
T PF05978_consen  124 GRNTGIFWAIF  134 (156)
T ss_pred             hhHHHHHHHHH
Confidence            88777644433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=87.99  E-value=2.2  Score=37.09  Aligned_cols=48  Identities=17%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +..+..+..+.....+..|.+| +.|++..++.+....+|+.+++.+..
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455566777789998 57888888888777888888886543

>PRK10133 L-fucose transporter; Provisional

Probab=87.83  E-value=2.1  Score=38.40  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=49.0

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      +.+.+..+.||.+||+.+..+....+..+. +. .+.     +. . . ......+..++.+..+...+....|.+|.+ 
T Consensus       311 G~~~~g~l~~r~g~~~~l~~~~~~~~~~~~-~~-~~~-----~~-~-~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-  379 (438)
T PRK10133        311 GRFTGTWLISRFAPHKVLAAYALIAMALCL-IS-AFA-----GG-H-V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-  379 (438)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HH-HHc-----CC-h-H-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-
Confidence            345566777888877665543222221111 11 111     11 1 1 122334445667777888888899999875 


Q ss_pred             HHHHHHHHHHHHhhhcccccceee
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      -+++.++... ..+|+.+.|.+..
T Consensus       380 ~~~as~l~~~-~~~g~~~~~~i~G  402 (438)
T PRK10133        380 TKYGSSFIVM-TIIGGGIVTPVMG  402 (438)
T ss_pred             hccchhHHhH-HhccchHHHHHHH
Confidence            4455665543 3356666665443

>PRK09848 glucuronide transporter; Provisional

Probab=87.79  E-value=2.7  Score=37.48  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhhhHhhhcccccchH-------HHHHHHHHHHHHHhhhcccccceee
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTP-------LRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~-------vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      +..+.........+...+|.-|..       .++...|+.+....+|..+++.+..
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555556677777776643       3577777777777777777776553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=87.73  E-value=0.59  Score=46.93  Aligned_cols=46  Identities=9%  Similarity=-0.101  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccc
Q psy14099         57 IGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQ  102 (224)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~  102 (224)
                      +..++.+........+..|..|.+.|++.+|+.+....++..+++.
T Consensus       343 ~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~  388 (1140)
T PRK06814        343 GLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTI  388 (1140)
T ss_pred             HHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHH
Confidence            3334444444567889999999999999999877666554444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=87.58  E-value=0.22  Score=44.54  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceee
Q psy14099         49 VFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ....++..+-.++.+..+.+..-..+.-||.+-|++-.++-+.+-.+|+.+.|.+..
T Consensus       118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHH
Confidence            334444455566777788889999999999999999999999999999998888773

>PRK11462 putative transporter; Provisional

Probab=87.35  E-value=2  Score=38.82  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             hhHhhhcccccc-----hHHHHHHHHHHH--HHHhhhccccccee
Q psy14099         67 TVLYVNTVDMFP-----TPLRQSLLAFCS--MIGRIGQVIAPQVF  104 (224)
Q Consensus        67 ~~~~~~~~ElfP-----t~vR~~g~g~~~--~~~~~~~~~~~~~~  104 (224)
                      ...+...+|.-.     |..|..|+.+..  .+..+|..+++.+.
T Consensus       337 ~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~  381 (460)
T PRK11462        337 PIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI  381 (460)
T ss_pred             HHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555554433     567877775543  55566665555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=87.23  E-value=3.6  Score=35.96  Aligned_cols=27  Identities=7%  Similarity=-0.025  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         80 PLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        80 ~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +.|++..++.+....++..+++.+...
T Consensus       340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        340 VSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788898888877777777666655543

>KOG1330|consensus

Probab=86.88  E-value=2.2  Score=38.84  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHH-hhhcccccceeeh
Q psy14099         48 VVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIG-RIGQVIAPQVFLL  106 (224)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~-~~~~~~~~~~~~~  106 (224)
                      .+..+++++++.......+++.--...|+-|.+.|.++.++-..+. -+|...+|++...
T Consensus       349 ~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi  408 (493)
T KOG1330|consen  349 MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI  408 (493)
T ss_pred             HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence            3444555555555555566666777889999999999999966555 5566677866654

>KOG2504|consensus

Probab=86.78  E-value=1.4  Score=40.65  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         51 RQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      .+...++..++.+..+.+.-+.+. .|..+-|+.+.|++....-+|.++-|.+.
T Consensus       138 ~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~  190 (509)
T KOG2504|consen  138 YLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLL  190 (509)
T ss_pred             HHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHH
Confidence            333444555555666666666666 55568899999998887777777666544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=86.65  E-value=1.4  Score=38.53  Aligned_cols=17  Identities=6%  Similarity=-0.080  Sum_probs=9.6

Q ss_pred             hHHHHhcccchHHHHHH
Q psy14099          5 VCIWMDHVVFRQTLFLI   21 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~   21 (224)
                      ....+.||.|||+.++.
T Consensus        57 ~~G~l~Dr~grr~~~~~   73 (396)
T TIGR00882        57 LFGLISDKLGLKKHLLW   73 (396)
T ss_pred             HHHHHHHHhCcHHHHHH
Confidence            34455666666665543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=86.59  E-value=2.6  Score=35.20  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +.+.++.|+.|-|..++++..........++.......+  ....+......+++........+....-..+-||. -|+
T Consensus        54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~--~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG  130 (250)
T PF06813_consen   54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP--SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRG  130 (250)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC--ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccC
Confidence            344556677776665555333222222212211111111  11223333233333222222334455666799995 699


Q ss_pred             HHHHHHHHHHhhhcc
Q psy14099         84 SLLAFCSMIGRIGQV   98 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~   98 (224)
                      +.+|+.-....+++.
T Consensus       131 ~vvgilk~~~GLSaa  145 (250)
T PF06813_consen  131 TVVGILKGFFGLSAA  145 (250)
T ss_pred             ceehhhhHHHHhHHH
Confidence            999987655555544

>PRK09528 lacY galactoside permease; Reviewed

Probab=86.26  E-value=1.1  Score=39.56  Aligned_cols=24  Identities=21%  Similarity=0.193  Sum_probs=18.1

Q ss_pred             hHHHHHHHHhhhhccceeeeccCC
Q psy14099        201 TIVGSIDGLGALLGSPFCAFISDK  224 (224)
Q Consensus       201 ~~~~s~~~~G~~~G~~~~G~lsDr  224 (224)
                      ....+++.++..+|.++.|.++||
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr  288 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINR  288 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566667777888888888887

>PF13347 MFS_2: MFS/sugar transport protein

Probab=84.84  E-value=1.1  Score=39.77  Aligned_cols=94  Identities=14%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH----
Q psy14099          5 VCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP----   80 (224)
Q Consensus         5 ~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~----   80 (224)
                      +...+.||.|||+.+..+....+.......  +.     +.+..+...+...+..++.+..+...+...+|+-+..    
T Consensus       279 ~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t  351 (428)
T PF13347_consen  279 LWGRLSKRFGKKKVYIIGLLLAALGFLLLF--FL-----GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT  351 (428)
T ss_pred             HHHHHHHHccceeehhhhHHHHHHHHHHHH--HH-----HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc
Confidence            345667888888876553333222222111  11     1122334445555555666666677889999998843    


Q ss_pred             -HH--HHHHHHHHHHHhhhcccccceee
Q psy14099         81 -LR--QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        81 -vR--~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                       .|  +.-.|+.+...+++..+++.+..
T Consensus       352 g~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  352 GRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             CCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence             23  45555566666777777776554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=84.68  E-value=3.6  Score=36.76  Aligned_cols=98  Identities=11%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchh-HHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHV-VFRQTLFLIGITGITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~   80 (224)
                      +.+.+.++.+|.|+|.-++.++...++... ++.      |-++... ...++..++...+.+.-.+....|.+-+.|.+
T Consensus        64 ~~lpa~~~~kk~gyk~gi~lgL~l~avg~~-lF~------pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~  136 (422)
T COG0738          64 MSLPAGLLIKKLGYKAGIVLGLLLYAVGAA-LFW------PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE  136 (422)
T ss_pred             HhccHHHHHHHhhhHHHHHHHHHHHHHHHH-HHh------hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence            345677888999999877765554443332 221      1111111 12222222222333334455678888999997


Q ss_pred             HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      --+.=+.+...+..+|+.++|.+...
T Consensus       137 ~a~~rlnl~q~fn~lGa~~gp~~g~~  162 (422)
T COG0738         137 SAAFRLNLAQAFNGLGAILGPLLGSS  162 (422)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            77777888899999999999987654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=82.06  E-value=6.6  Score=34.47  Aligned_cols=44  Identities=0%  Similarity=-0.152  Sum_probs=20.8

Q ss_pred             HHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         60 TGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        60 ~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      +...........+..+..|.+ +++..+.......+|..++|.+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~  360 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIG  360 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444666777744 33333433344445555555444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=82.02  E-value=7.5  Score=33.78  Aligned_cols=34  Identities=12%  Similarity=-0.229  Sum_probs=22.2

Q ss_pred             hHhhhcccccchHHHHHHHHHHHHHHhhhccccc
Q psy14099         68 VLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAP  101 (224)
Q Consensus        68 ~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~  101 (224)
                      ..-.+..|..+.+.|+.+.+.......+|..+++
T Consensus       117 ~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~  150 (390)
T TIGR02718       117 ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGG  150 (390)
T ss_pred             HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4556788999888887766555444455555444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=81.46  E-value=5.8  Score=34.46  Aligned_cols=19  Identities=16%  Similarity=0.121  Sum_probs=12.6

Q ss_pred             hhHHHHhcccchHHHHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIG   22 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~   22 (224)
                      +....+.||.|||+.+..+
T Consensus       257 ~~~~~l~~r~g~~~~~~~~  275 (392)
T PRK10473        257 FSTPFALGIFKPRTLMLTS  275 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHH
Confidence            4455667888888776553

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=81.04  E-value=4.2  Score=37.13  Aligned_cols=93  Identities=22%  Similarity=0.356  Sum_probs=52.0

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccc-----cc
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDM-----FP   78 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El-----fP   78 (224)
                      ++...+.+|.|||++...+....++....++  +.     +.+...+.++..++..+..+..+...|+..+|+     +-
T Consensus       290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~--f~-----~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~  362 (467)
T COG2211         290 ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY--FT-----PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK  362 (467)
T ss_pred             HhHHHHHHHhchHHHHHHHHHHHHHHHHHHH--hh-----cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH
Confidence            3445667889999887664332222222111  11     222334444444566666777777788888876     45


Q ss_pred             hHHHHHHHHHH--HHHHhhhcccccce
Q psy14099         79 TPLRQSLLAFC--SMIGRIGQVIAPQV  103 (224)
Q Consensus        79 t~vR~~g~g~~--~~~~~~~~~~~~~~  103 (224)
                      |.+|..|+..+  ..+..+|..++.++
T Consensus       363 TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         363 TGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            67787776654  44444544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.84
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.64
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.44
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.44
2xut_A	524	Proton/peptide symporter family protein; transport	97.11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.03
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.83
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	94.69
2xut_A	524	Proton/peptide symporter family protein; transport	94.22

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.88  E-value=2.8e-09  Score=94.10  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=62.2

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhh-hhHhhhcccccchHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAY-TVLYVNTVDMFPTPL   81 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfPt~v   81 (224)
                      .+++..+.||.|||+.++.+..++.+.+..+.....   . . ......++..++...+++..+ .+.|+|.+|+|||++
T Consensus       329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~  403 (491)
T 4gc0_A          329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---T-Q-APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  403 (491)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---T-T-CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred             HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---c-c-cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence            456777888988888766644333322221211111   1 1 112222333333333444444 357899999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccceeeh
Q psy14099         82 RQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        82 R~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      |++|+|+++..+++++.+++++.+.
T Consensus       404 R~~~~g~~~~~~~~~~~i~~~~~p~  428 (491)
T 4gc0_A          404 RGKALAIAVAAQWLANYFVSWTFPM  428 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988876643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.84  E-value=2.2e-05  Score=68.07  Aligned_cols=94  Identities=5%  Similarity=0.003  Sum_probs=55.0

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +.+..+.||.|||+++..+.....+.+. .. .+      ... .+...+..++..+.........+.+.+|.+|++.|+
T Consensus       277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g  347 (417)
T 2cfq_A          277 FFAPLIINRIGGKNALLLAGTIMSVRII-GS-SF------ATS-ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA  347 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHH-HH-TT------CCS-HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHH-HH-HH------hcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4455667888888776553333222222 11 11      111 222222222222333333445688999999999999


Q ss_pred             HHHHHH-HHHHhhhcccccceeeh
Q psy14099         84 SLLAFC-SMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~-~~~~~~~~~~~~~~~~~  106 (224)
                      ++.++. +...++|+.++|.+...
T Consensus       348 ~~~g~~~~~~~~lg~~~gp~l~G~  371 (417)
T 2cfq_A          348 TIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHhHHHHHhhhhHHH
Confidence            999995 66677888888876653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.78  E-value=6.4e-05  Score=64.76  Aligned_cols=98  Identities=10%  Similarity=-0.000  Sum_probs=63.2

Q ss_pred             chhhHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchH
Q psy14099          2 SRIVCIWMDHVVFRQTLFLIGITGITSAYTVLYV-NTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTP   80 (224)
Q Consensus         2 ~~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~   80 (224)
                      +.++...+.||.|||+.++.+.....+...+... ..      ... .+..++..++..++.+........+.+|.+|.+
T Consensus        77 ~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  149 (438)
T 3o7q_A           77 IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------IMN-YTLFLVGLFIIAAGLGCLETAANPFVTVLGPES  149 (438)
T ss_dssp             THHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST
T ss_pred             HHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------ccc-HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch
Confidence            3455666778888888766644333222221110 11      111 223333444444555566667889999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         81 LRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        81 vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .|++++++......+|..++|.+...
T Consensus       150 ~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          150 SGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.64  E-value=0.00011  Score=63.42  Aligned_cols=98  Identities=10%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.++.+.....+... +.. +..... ++  .+..++..++..++.+........+.+|.+|.+.|
T Consensus        79 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~-~~~-~~~~~~-~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r  153 (451)
T 1pw4_A           79 KFIMGSVSDRSNPRVFLPAGLILAAAVML-FMG-FVPWAT-SS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  153 (451)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HHH-HCHHHH-SS--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred             HHhHHHHHHhcCchHHHHHHHHHHHHHHH-HHH-hhhhcc-cc--HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhh
Confidence            34555667888888876654433322222 111 100000 11  12233334444455555666788999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++++|+......+|..++|.+..
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.44  E-value=0.00037  Score=60.07  Aligned_cols=53  Identities=13%  Similarity=0.214  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhh-hcccccceeeh
Q psy14099         54 LFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRI-GQVIAPQVFLL  106 (224)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~-~~~~~~~~~~~  106 (224)
                      ..++..++....+...+.+..|.+|++.|+++.|+.+....+ |+.++|.+...
T Consensus       352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334445555666789999999999999999999999999 99999887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.44  E-value=0.00029  Score=61.74  Aligned_cols=94  Identities=11%  Similarity=0.025  Sum_probs=56.7

Q ss_pred             hhhHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          3 RIVCIWMDHV-VFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         3 ~l~~~~~~~~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      .+++..+.|| .|||+.++.+.....+... +.. +      .++ .+...+..++..++.+........+.+|.+|.+.
T Consensus        71 ~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~-~~~-~------~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  141 (491)
T 4aps_A           71 GTIGGFVADRIIGARPAVFWGGVLIMLGHI-VLA-L------PFG-ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD  141 (491)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-HHH-S------CCS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHH-HHH-H------hhh-HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence            3455666777 7888877664433322222 111 1      111 2223333344445555566678899999999988


Q ss_pred             --HHHHHHHHHHHHhhhcccccceee
Q psy14099         82 --RQSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        82 --R~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                        |++++++.+....+|..++|.+..
T Consensus       142 ~~r~~~~~~~~~~~~~g~~~~~~~~~  167 (491)
T 4aps_A          142 RRRDAGFSIFVFGINLGAFIAPLIVG  167 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeehHHHHHHHHHHHHHHHHHH
Confidence              777777777777888887776654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.44  E-value=0.00051  Score=60.06  Aligned_cols=49  Identities=22%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhccccccee
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVF  104 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~  104 (224)
                      ++..++.++......+|.+|..|.+.|++..++......+|...++.+.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~  182 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN  182 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcc
Confidence            3334445556667899999999999999999887776666665555433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.11  E-value=0.0014  Score=57.99  Aligned_cols=95  Identities=11%  Similarity=-0.053  Sum_probs=54.1

Q ss_pred             hhhHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHH
Q psy14099          3 RIVCIWMDHVV-FRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPL   81 (224)
Q Consensus         3 ~l~~~~~~~~~-gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~v   81 (224)
                      .+++..+.||. |||+.++.+.....+...+..  +.     +.. .+...+..++..++.+........+.+|.+|.+.
T Consensus        71 ~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~~-----~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  142 (524)
T 2xut_A           71 PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA--IF-----EHS-VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN  142 (524)
T ss_dssp             HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH--HT-----SSC-HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH--Hh-----ccc-HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence            34555666777 888776553332222222111  11     102 2223333333344445555677899999999999


Q ss_pred             HHHHHHH---HHHHHhhhcccccceee
Q psy14099         82 RQSLLAF---CSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        82 R~~g~g~---~~~~~~~~~~~~~~~~~  105 (224)
                      |++..+.   .+....+|+.++|.+..
T Consensus       143 r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A          143 KSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9765555   67777777777776554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.08  E-value=0.00018  Score=60.88  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=56.8

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      +....+.||.|||+.++.+............  +      .+ ..+...+..++..++.+........+.+|.+|.+.|+
T Consensus        53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~------~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (375)
T 2gfp_A           53 LFYGPISDRVGRRPVILVGMSIFMLATLVAV--T------TS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR  123 (375)
T ss_dssp             TTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH--H------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHH--H------hc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH
Confidence            4455566777777665443322222111111  1      11 1222333333444444555566789999999999999


Q ss_pred             HHHHHHHHHHhhhcccccceeeh
Q psy14099         84 SLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        84 ~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +..++......+|..++|.+...
T Consensus       124 ~~~~~~~~~~~~g~~~~~~~~~~  146 (375)
T 2gfp_A          124 HANSLLNMGILVSPLLAPLIGGL  146 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999998888888888876643

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.03  E-value=0.0019  Score=55.38  Aligned_cols=92  Identities=11%  Similarity=0.030  Sum_probs=57.1

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .+++..+.||.|||+++..+.......+. +. .+      ... ......+ ++..++.+..+...+.+..|.+|++ |
T Consensus       312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~-~~-~~------~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~  380 (438)
T 3o7q_A          312 RFTGTWLISRFAPHKVLAAYALIAMALCL-IS-AF------AGG-HVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-T  380 (438)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-HH-HH------CCH-HHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-H
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHH-HH-HH------cCC-cHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence            45566677888888876653332222222 11 11      111 2222222 3334555666777889999999988 9


Q ss_pred             HHHHHHHHHHHhhhcccccceeeh
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      +++.++.. .+.+++.++|.+...
T Consensus       381 ~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          381 KYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             cchhhHHH-HHHHHHHHHHHHHHH
Confidence            99988877 678999888887654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.83  E-value=0.00039  Score=60.95  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..+.........+.+..|.+|++.|+++.|+.+....+|+.++|.+...
T Consensus       394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444456678999999999999999999999999999999887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=94.69  E-value=0.011  Score=49.52  Aligned_cols=51  Identities=14%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         55 FLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      .++..++.+..+.....+..|.+| +.|+++.|+.+....+|+.++|.+...
T Consensus       298 ~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          298 AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555556677899999999 899999999999999999999987654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.22  E-value=0.027  Score=49.54  Aligned_cols=51  Identities=8%  Similarity=0.076  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhcccccceeeh
Q psy14099         56 LIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQVIAPQVFLL  106 (224)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~~~~~~~~~~  106 (224)
                      ++..++........+.+..|..|++.|++++|+.+....+|+.++|.+...
T Consensus       413 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~  463 (524)
T 2xut_A          413 ALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS  463 (524)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455556788999999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.63
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.61
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.32

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=5.4e-05  Score=62.82  Aligned_cols=98  Identities=10%  Similarity=0.064  Sum_probs=59.6

Q ss_pred             hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHH
Q psy14099          3 RIVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLR   82 (224)
Q Consensus         3 ~l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR   82 (224)
                      .++...+.||.|||+.+..+.....+...+..  +....  .+. .....+.-++..++.+..+.....+.+|.+|.+.|
T Consensus        76 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~--~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r  150 (447)
T d1pw4a_          76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--FVPWA--TSS-IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER  150 (447)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCHHH--HSS-SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc--ccchh--hhh-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcc
Confidence            34556677888888876653332222111111  11000  011 12233333444445555666788999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccceee
Q psy14099         83 QSLLAFCSMIGRIGQVIAPQVFL  105 (224)
Q Consensus        83 ~~g~g~~~~~~~~~~~~~~~~~~  105 (224)
                      ++.+|+.+....+|+.++|.+..
T Consensus       151 ~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_         151 GGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             cccccccccccchhhhhhhhhhh
Confidence            99999999999999888886554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=6.5e-05  Score=60.75  Aligned_cols=93  Identities=5%  Similarity=-0.005  Sum_probs=57.5

Q ss_pred             hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHhhhhHhhhcccccchHHHH
Q psy14099          4 IVCIWMDHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLHHVVFRQTLFLIGITGITSAYTVLYVNTVDMFPTPLRQ   83 (224)
Q Consensus         4 l~~~~~~~~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~   83 (224)
                      .....+.||.+||+.+..+......... .. .+      .. ..+...+..++..++.+..+.....+..|.+|++.|+
T Consensus       277 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~-~~-~~------~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  347 (417)
T d1pv7a_         277 FFAPLIINRIGGKNALLLAGTIMSVRII-GS-SF------AT-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA  347 (417)
T ss_dssp             TTHHHHHHHHCHHHHHHHHHHHHHHHHH-HH-HT------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred             hhhhhhhcccccccchhhhHHHHHHhhh-cc-cc------cc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH
Confidence            3445566777777776553333222222 11 11      11 2333444444555556666777889999999999999


Q ss_pred             HHHHHHHHH-Hhhhcccccceee
Q psy14099         84 SLLAFCSMI-GRIGQVIAPQVFL  105 (224)
Q Consensus        84 ~g~g~~~~~-~~~~~~~~~~~~~  105 (224)
                      ++.|+.... ..+|+.++|.+..
T Consensus       348 ~~~~~~~~~~~~~g~~i~~~~~G  370 (417)
T d1pv7a_         348 TIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999986554 4578878887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00025  Score=58.62  Aligned_cols=53  Identities=13%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhhhhHhhhcccccchHHHHHHHHHHHHHHhhhc-cccccee
Q psy14099         52 QTLFLIGITGITSAYTVLYVNTVDMFPTPLRQSLLAFCSMIGRIGQ-VIAPQVF  104 (224)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~ElfPt~vR~~g~g~~~~~~~~~~-~~~~~~~  104 (224)
                      .+..++..+...+.....+.+..|.+|++.|+++.|+.+..+++++ ..+|.+.
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333343444555566788999999999999999999988888754 4566654