Psyllid ID: psy14103

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MMYLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Secondary Structure (PSIPRED)
cEEEEccccccEEEEEEccccEEEEEcEEEcccccEEEccccEEEEccccccccEEEEEEEccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEHcccccccEEEEEEcccEEEEcccEEEcccccEEEEcccEEEEEEccccccccEEEEEcccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mmylsglpdknyVLAWKRGIAILtagstkvtpdkriqlvdgynlqitdlqttdagsyqcqigtlepkeiTHTLEILGF
Flexible Loop (DISEMBL)
mmylsglpDKNYVLAWKRGIAIltagstkvtpdkriQLVDGYNLQITDLQTTDAGSYQCQIgtlepkeithtleilgf
Low Complexity Region (SEG)
MMYLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Disordered region (IsUnstruct)
******LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI***
Disordered Region (DISOPRED)
*MYLSG*PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Disordered Region (DISEMBL)
MMYLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Disordered Region (DISPRO)
*MYLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMYLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
242021179	454	limbic system-associated membrane protei	0.846	0.145	0.787	2e-24
242018223	500	limbic system-associated membrane protei	0.846	0.132	0.712	5e-23
194745650	112	GF18688 [Drosophila ananassae] gi|190628	0.846	0.589	0.742	1e-22
195444521	115	GK19187 [Drosophila willistoni] gi|19416	0.846	0.573	0.727	7e-22
328701973	535	PREDICTED: neural cell adhesion molecule	0.833	0.121	0.692	8e-22
328701975	551	PREDICTED: neural cell adhesion molecule	0.833	0.117	0.692	9e-22
194907176	111	GG12091 [Drosophila erecta] gi|190656139	0.858	0.603	0.716	1e-21
195503676	113	GE10539 [Drosophila yakuba] gi|194184852	0.858	0.592	0.716	1e-21
195352949	111	GM16321 [Drosophila sechellia] gi|195574	0.858	0.603	0.716	1e-21
161078695	566	CG34353, isoform A [Drosophila melanogas	0.833	0.114	0.723	1e-21

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 58/66 (87%)

Query: 11  NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
           NYVL WKRGIA+LTAG+ KVTPD RIQL+DGYNLQI D+QT DAG+Y CQIGT+ P EIT
Sbjct: 48  NYVLVWKRGIAVLTAGTVKVTPDPRIQLIDGYNLQIRDVQTHDAGNYICQIGTMVPLEIT 107

Query: 71  HTLEIL 76
           HTLEIL
Sbjct: 108 HTLEIL 113

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 11  NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
           NY++ WKRGIA+L+AG+ KVTPD RI+LV+GYNL+I D+QT DAG Y CQ+GTL+P+EIT
Sbjct: 63  NYLVVWKRGIAVLSAGNVKVTPDPRIKLVEGYNLEIQDVQTQDAGDYVCQLGTLQPREIT 122

Query: 71  HTLEIL 76
           HTLEIL
Sbjct: 123 HTLEIL 128

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745650|ref|XP_001955300.1| GF18688 [Drosophila ananassae] gi|190628337|gb|EDV43861.1| GF18688 [Drosophila ananassae]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 58/66 (87%)

Query: 12  YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71
           YV+AWKRGIAILTAGS KVTPD R++LV+G+NLQI D Q TDAG Y CQI T++P+EITH
Sbjct: 46  YVVAWKRGIAILTAGSVKVTPDPRVRLVNGFNLQIRDAQPTDAGDYICQIATMDPREITH 105

Query: 72  TLEILG 77
           T+EILG
Sbjct: 106 TVEILG 111

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444521|ref|XP_002069905.1| GK19187 [Drosophila willistoni] gi|194165990|gb|EDW80891.1| GK19187 [Drosophila willistoni]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 12  YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71
           YV+AWKRGIAIL+AGS KVTPD R+ LV+GYNLQI D   TDAG Y CQI T++P+EITH
Sbjct: 49  YVVAWKRGIAILSAGSVKVTPDPRVHLVNGYNLQIRDASPTDAGDYICQIATMDPREITH 108

Query: 72  TLEILG 77
           T+EILG
Sbjct: 109 TVEILG 114

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701973|ref|XP_001945384.2| PREDICTED: neural cell adhesion molecule 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 60/65 (92%)

Query: 12  YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71
           ++LAWK+GIA+LTAGSTKV+PD+RI+LVDG NL+I D+QT DAG+Y CQI T++P+EI+H
Sbjct: 104 FILAWKKGIAVLTAGSTKVSPDERIRLVDGNNLEIRDIQTNDAGNYVCQIATMKPREISH 163

Query: 72  TLEIL 76
           T+EIL
Sbjct: 164 TVEIL 168

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701975|ref|XP_003241763.1| PREDICTED: neural cell adhesion molecule 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 60/65 (92%)

Query: 12  YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71
           ++LAWK+GIA+LTAGSTKV+PD+RI+LVDG NL+I D+QT DAG+Y CQI T++P+EI+H
Sbjct: 104 FILAWKKGIAVLTAGSTKVSPDERIRLVDGNNLEIRDIQTNDAGNYVCQIATMKPREISH 163

Query: 72  TLEIL 76
           T+EIL
Sbjct: 164 TVEIL 168

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194907176|ref|XP_001981501.1| GG12091 [Drosophila erecta] gi|190656139|gb|EDV53371.1| GG12091 [Drosophila erecta]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 11  NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
            YV+AWKRGIAILTAGS KVTPD R++LV+G+NLQI D   TDAG Y CQI T++P+EIT
Sbjct: 44  TYVVAWKRGIAILTAGSVKVTPDPRVRLVNGFNLQIRDALPTDAGDYICQIATMDPREIT 103

Query: 71  HTLEILG 77
           HT+EILG
Sbjct: 104 HTVEILG 110

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503676|ref|XP_002098751.1| GE10539 [Drosophila yakuba] gi|194184852|gb|EDW98463.1| GE10539 [Drosophila yakuba]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 11  NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
            YV+AWKRGIAILTAGS KVTPD R++LV+G+NLQI D   TDAG Y CQI T++P+EIT
Sbjct: 46  TYVVAWKRGIAILTAGSVKVTPDPRVRLVNGFNLQIRDALPTDAGDYICQIATMDPREIT 105

Query: 71  HTLEILG 77
           HT+EILG
Sbjct: 106 HTVEILG 112

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195352949|ref|XP_002042973.1| GM16321 [Drosophila sechellia] gi|195574420|ref|XP_002105187.1| GD18058 [Drosophila simulans] gi|194127038|gb|EDW49081.1| GM16321 [Drosophila sechellia] gi|194201114|gb|EDX14690.1| GD18058 [Drosophila simulans]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 11  NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
            YV+AWKRGIAILTAGS KVTPD R++LV+G+NLQI D   TDAG Y CQI T++P+EIT
Sbjct: 44  TYVVAWKRGIAILTAGSVKVTPDPRVRLVNGFNLQIRDALPTDAGDYICQIATMDPREIT 103

Query: 71  HTLEILG 77
           HT+EILG
Sbjct: 104 HTVEILG 110

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078695|ref|NP_001097949.1| CG34353, isoform A [Drosophila melanogaster] gi|386766647|ref|NP_001247342.1| CG34353, isoform B [Drosophila melanogaster] gi|158030420|gb|ABW08787.1| CG34353, isoform A [Drosophila melanogaster] gi|383292993|gb|AFH06659.1| CG34353, isoform B [Drosophila melanogaster]

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 12  YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITH 71
           YV+AWKRGIAILTAGS KVTPD R++LV+G+NLQI D   TDAG Y CQI T++P+EITH
Sbjct: 115 YVVAWKRGIAILTAGSVKVTPDPRVRLVNGFNLQIRDALPTDAGDYICQIATMDPREITH 174

Query: 72  TLEIL 76
           T+EIL
Sbjct: 175 TVEIL 179

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.846	0.121	0.515	9.8e-14
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.846	0.141	0.484	4.2e-13
FB|FBgn0040726	367	dpr "defective proboscis exten	0.884	0.188	0.421	1.4e-06
FB|FBgn0052057	408	dpr10 "dpr10" [Drosophila mela	0.846	0.161	0.369	0.0002
FB|FBgn0053512	323	dpr4 "dpr4" [Drosophila melano	0.679	0.164	0.393	0.00029
FB|FBgn0040823	283	dpr6 "dpr6" [Drosophila melano	0.679	0.187	0.416	0.00048
FB|FBgn0030723	519	dpr18 "dpr18" [Drosophila mela	0.858	0.129	0.333	0.00058
FB|FBgn0053516	522	dpr3 "dpr3" [Drosophila melano	0.807	0.120	0.347	0.00095

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query:    11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
             N+VL W+RG  +LTA +  VT D+R++L+DGYNL+I+DL+  DAG Y CQI     ++  
Sbjct:   129 NFVLLWRRGTNVLTASNIMVTRDERVRLIDGYNLEISDLEPQDAGDYVCQISDKINRDQV 188

Query:    71 HTLEIL 76
             HT+EIL
Sbjct:   189 HTVEIL 194

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query:    11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
             ++VL W++G ++LTAG  K+T D+R ++V  YNLQI  ++T DAG Y CQ+G  E ++  
Sbjct:    67 SFVLLWRKGSSVLTAGHLKITRDQRFKIVGDYNLQINGVKTQDAGDYICQLGDQENRDQV 126

Query:    71 HTLEIL 76
             HT+EIL
Sbjct:   127 HTVEIL 132

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0040726 dpr "defective proboscis extension response" [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 32/76 (42%), Positives = 45/76 (59%)

Query:     7 LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--DG---YNLQITDLQTTDAGSYQCQI 61
             L DK+     KR + ILTAG T  T D+R Q++  DG   + LQI   Q  D+G Y+CQI
Sbjct:    80 LGDKDVSWIRKRDLHILTAGGTTYTSDQRFQVLRPDGSANWTLQIKYPQPRDSGVYECQI 139

Query:    62 GTLEPK-EITHTLEIL 76
              T EPK  +++T  ++
Sbjct:   140 NT-EPKMSLSYTFNVV 154

GO:0035199 "salt aversion" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0050914 "sensory perception of salty taste" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0052057 dpr10 "dpr10" [Drosophila melanogaster (taxid:7227)]

 Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 27/73 (36%), Positives = 37/73 (50%)

Query:    11 NYVLAW--KRGIAILTAGSTKVTPDKRIQL-----VDGYNLQITDLQTTDAGSYQCQIGT 63
             N  +AW   R + ILT G+   T D+R Q      +D + LQI   Q  DAG Y+CQI T
Sbjct:    82 NKTVAWIRHRDLHILTVGTYTYTTDQRFQTSYHRDIDEWTLQIKWAQQRDAGVYECQIST 141

Query:    64 LEPKEITHTLEIL 76
                +  +  L I+
Sbjct:   142 QPVRSYSVNLNIV 154

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0053512 dpr4 "dpr4" [Drosophila melanogaster (taxid:7227)]

 Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query:    14 LAW--KRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP 66
             ++W  KR + ILT G    T D+R Q +     D + L+I+  Q  D+G+Y+CQ+ T EP
Sbjct:    77 VSWIRKRDLHILTVGILTYTNDQRFQSLHSEGSDEWTLRISSPQPRDSGTYECQVST-EP 135

Query:    67 K 67
             K
Sbjct:   136 K 136

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0040823 dpr6 "dpr6" [Drosophila melanogaster (taxid:7227)]

 Score = 93 (37.8 bits), Expect = 0.00048, P = 0.00048
 Identities = 25/60 (41%), Positives = 31/60 (51%)

Query:    11 NYVLAW--KRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT 63
             N  ++W   R I ILT GS   T D+R Q       + + LQI   Q  DAG Y+CQI T
Sbjct:   102 NKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTEDWTLQIKWAQKRDAGMYECQIST 161

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0030723 dpr18 "dpr18" [Drosophila melanogaster (taxid:7227)]

 Score = 96 (38.9 bits), Expect = 0.00058, P = 0.00058
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query:    10 KNYVLAWKRG----IAILTAGSTKVTPDKRI----QLVDGYNLQITDLQTTDAGSYQCQI 61
             K+  + W R     +++LT G+   + D RI    Q  + + L I   QT DAG Y CQ+
Sbjct:   252 KDKTVMWVRRTAEKVSLLTVGNVTYSGDPRIRVKFQYPNNWRLLINPTQTEDAGVYMCQV 311

Query:    62 GTLEPKEITHTLEIL 76
              T  P+  T  L +L
Sbjct:   312 STHPPRVFTTNLTVL 326

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0053516 dpr3 "dpr3" [Drosophila melanogaster (taxid:7227)]

 Score = 94 (38.1 bits), Expect = 0.00095, P = 0.00095
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:     4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSYQ 58
             +  L DK+     KR + ILT G+   T DKR Q+ +      + L +      D+G Y+
Sbjct:   261 VDSLHDKSVSWIRKRDLHILTVGTATYTSDKRFQVTESKDSREWTLHVKAPLAKDSGIYE 320

Query:    59 CQIGTLEPK 67
             CQ+ T EPK
Sbjct:   321 CQVNT-EPK 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.41    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  99 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.65u 0.10s 8.75t   Elapsed:  00:00:07
  Total cpu time:  8.65u 0.10s 8.75t   Elapsed:  00:00:07
  Start:  Thu Aug 15 10:53:25 2013   End:  Thu Aug 15 10:53:32 2013

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0002115 "store-operated calcium entry" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	6e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.001
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.002
smart00410	85	smart00410, IG_like, Immunoglobulin like	0.003
smart00409	85	smart00409, IG, Immunoglobulin	0.003
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.003
cd05775	97	cd05775, Ig_SLAM-CD84_like_N, N-terminal immunoglo	0.004

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 34.3 bits (79), Expect = 6e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          W +G  +LT  S       RI +    +L+I ++  +D G Y C 
Sbjct: 20 WSKGTELLTNSS-------RICIWPDGSLEILNVTKSDEGKYTCF 57

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 34.7 bits (80), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
          G      ++R+++VD  NL I + + +D G+Y+C
Sbjct: 35 GQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKC 68

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
          W +    L +         R        L I+++   D+G+Y C  
Sbjct: 17 WLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA 62

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 7/24 (29%), Positives = 17/24 (70%)

Query: 40  DGYNLQITDLQTTDAGSYQCQIGT 63
           + ++L I++L+ +D+G+Y C +  
Sbjct: 77  NDFSLTISNLRLSDSGTYTCAVSN 100

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 32.9 bits (75), Expect = 0.003
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 9  DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---LQITDLQTTDAGSYQCQ 60
               + W +       G   +    R  +    +   L I+++   D+G+Y C 
Sbjct: 21 SPPPEVTWYKQ------GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 32.9 bits (75), Expect = 0.003
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 9  DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN---LQITDLQTTDAGSYQCQ 60
               + W +       G   +    R  +    +   L I+++   D+G+Y C 
Sbjct: 21 SPPPEVTWYKQ------GGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 32.4 bits (74), Expect = 0.003
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          P  R +++D  +L+I ++   D GSY C+
Sbjct: 25 PKGRAEILDDKSLKIRNVTAGDEGSYTCE 53

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143252 cd05775, Ig_SLAM-CD84_like_N, N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 17 KRGIAILTAGSTK----VTPDKRIQ-----LVDGYNLQITDLQTTDAGSYQCQIGTLEPK 67
             +AI+T G       +  D   +       + Y+LQI++L+  DAGSY+ +I T    
Sbjct: 27 NTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGV 86

Query: 68 EIT 70
           IT
Sbjct: 87 TIT 89

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having Tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.67
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.65
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.65
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.62
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.61
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.61
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.61
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.57
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.55
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.55
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.54
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.53
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.52
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.51
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.51
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.51
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.5
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.49
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.49
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.47
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.45
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.44
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.44
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.44
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.43
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.43
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.42
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.4
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.4
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.4
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.4
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.4
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.39
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.39
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.39
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.39
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.39
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.38
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.38
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.37
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.36
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.36
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.36
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.34
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.34
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.34
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.34
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.33
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.33
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.32
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.32
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.31
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.31
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.3
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.3
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.3
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.27
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.25
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.25
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.25
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.24
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.24
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.23
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.23
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.22
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.22
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.21
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.19
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.19
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.17
KOG3513|consensus	1051		99.16
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.16
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.15
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.15
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.15
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.14
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.14
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.14
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.14
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.13
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.12
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.11
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.09
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.08
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.07
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.05
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.05
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.04
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	99.04
PHA02826	227	IL-1 receptor-like protein; Provisional	99.04
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	99.03
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.01
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.97
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.97
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.95
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.95
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.94
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.93
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.91
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.89
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.88
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.87
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.86
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.86
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.85
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.85
KOG4221|consensus	1381		98.84
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.84
smart00409	86	IG Immunoglobulin.	98.84
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.82
KOG3513|consensus	1051		98.82
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.8
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.8
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.79
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.79
PHA02785	326	IL-beta-binding protein; Provisional	98.79
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.78
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.78
PHA02826	227	IL-1 receptor-like protein; Provisional	98.74
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.74
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.73
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.72
KOG4194|consensus	873		98.72
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.72
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.69
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.68
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.67
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.66
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.66
smart00406	81	IGv Immunoglobulin V-Type.	98.65
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.62
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.62
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.62
PHA02785	326	IL-beta-binding protein; Provisional	98.61
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.59
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.58
KOG4222|consensus	1281		98.57
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.46
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.46
KOG4221|consensus	1381		98.45
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.44
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.36
PHA03376	221	BARF1; Provisional	98.34
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.25
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.23
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.22
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.2
PHA02633	63	hypothetical protein; Provisional	98.15
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.14
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.02
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.92
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.87
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.78
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.76
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.76
KOG4222|consensus	1281		97.71
smart00407	75	IGc1 Immunoglobulin C-Type.	97.68
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.68
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.64
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.53
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.53
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.51
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.5
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.39
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.39
KOG4194|consensus	873		97.38
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.3
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.29
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.21
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.08
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.07
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.06
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.06
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.97
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.92
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.83
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.79
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.74
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.61
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.57
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.31
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.09
KOG1480|consensus	909		95.93
PHA02982	251	hypothetical protein; Provisional	95.47
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.33
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.93
PHA03042	286	CD47-like protein; Provisional	94.8
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	94.74
PHA03282	540	envelope glycoprotein E; Provisional	94.44
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.04
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	92.89
KOG4597|consensus	560		91.27
PHA03282	540	envelope glycoprotein E; Provisional	90.37
PHA02914	500	Immunoglobulin-like domain protein; Provisional	90.19
PHA03286	492	envelope glycoprotein E; Provisional	89.59
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	87.62
PHA03283	542	envelope glycoprotein E; Provisional	85.81
PHA02865	338	MHC-like TNF binding protein; Provisional	85.77
PF01688	161	Herpes_gI: Alphaherpesvirus glycoprotein I; InterP	83.27
PHA03281	642	envelope glycoprotein E; Provisional	82.33
KOG3515|consensus	741		82.32
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	81.8
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	81.3
PHA03286	492	envelope glycoprotein E; Provisional	80.33

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.67  E-value=4.9e-16  Score=88.18  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=57.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +++.+...+.|.|+|+++.|.+..    ...||...    ..++|+|.+++.+|+|.|+|.+.|. ...+..+.|.|.|+
T Consensus         9 v~~d~~l~~~~~W~~dg~~i~~~~----~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p   84 (85)
T cd05853           9 VSHDHSLDIVFTWSFNGHLIDFQK----DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP   84 (85)
T ss_pred             eccCCCCCcEEEEEECCEECcccC----CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence            445566678999999999986431    34578764    4578999999999999999999987 58899999999985

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.65  E-value=3.9e-15  Score=86.06  Aligned_cols=67  Identities=22%  Similarity=0.395  Sum_probs=56.4

Q ss_pred             CCCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103          9 DKNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus         9 ~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      .++..+.|++ +..++.+++.....++||++.    .+++|+|++++.+|+|.|+|++.+.++.+..++++|
T Consensus        24 ~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~~   95 (95)
T cd05881          24 NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTITV   95 (95)
T ss_pred             CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEEC
Confidence            3456799998 556676766676799999976    467899999999999999999999999999988875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.65  E-value=3.8e-15  Score=84.01  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=57.7

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE---E-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL---V-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~---~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .++|.|..+..+.|+|++..+....    .+.||..   . ..++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|
T Consensus         8 ~a~g~P~p~~~v~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~   83 (85)
T cd05854           8 HASHDPTMDLTFTWSLDDFPIDLDK----PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRG   83 (85)
T ss_pred             EEecCCCCCeEEEEEECCeEccccC----CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEEC
Confidence            3678888888899999988775421    2445532   2 4579999999999999999999987 5889999999998


Q ss_pred             C
Q psy14103         78 F   78 (78)
Q Consensus        78 ~   78 (78)
                      +
T Consensus        84 ~   84 (85)
T cd05854          84 P   84 (85)
T ss_pred             C
Confidence            5

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.62  E-value=4.3e-15  Score=82.28  Aligned_cols=64  Identities=23%  Similarity=0.390  Sum_probs=51.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.+  .|.|+|++..|..      ..+||++..+    .+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus         7 v~G~P~P--~i~W~k~~~~i~~------~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           7 ISAIPPP--KIFWKRNNEMVQY------NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEecCCC--eEEEEECCEECcC------CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            5677665  8999999888753      2468887522    38999999999999999999987 58888888876

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.61  E-value=5.3e-15  Score=81.40  Aligned_cols=63  Identities=25%  Similarity=0.474  Sum_probs=52.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+.+++|.|
T Consensus        10 ~~g~P~--p~v~W~k~~~~l~-------~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          10 PKAAPK--PKFSWSKGTELLV-------NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             cceeCC--CEEEEEeCCEecc-------cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            345554  5899999887663       357999888899999999999999999999987 58888888875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.61  E-value=8.7e-15  Score=84.37  Aligned_cols=70  Identities=29%  Similarity=0.476  Sum_probs=56.4

Q ss_pred             EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      +.|.|  .+.|.|+|.+ .++.++......+.||.+.    .+++|.|.+|+.+|+|.|+|++.+.+..+..++|.|
T Consensus        21 v~g~~--~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~v   95 (95)
T cd05882          21 VKEHD--NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV   95 (95)
T ss_pred             EeCCC--CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEEC
Confidence            45554  4679999954 5566666666678999865    358999999999999999999999888899988876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.61  E-value=4.6e-15  Score=83.08  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE----EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~----~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|.|.....+.|+|++..+....    .+.++.    ...+++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|+
T Consensus         9 ~~g~P~p~i~~~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p   84 (85)
T cd04970           9 ASHDPTLDLTFTWSFNGVPIDFDK----DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP   84 (85)
T ss_pred             EecCCCCCeEEEEEECCeEeeccC----CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence            577888777889999988775432    223332    225689999999999999999999987 58899999999875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=8.5e-15  Score=80.98  Aligned_cols=64  Identities=25%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCe----EEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGY----NLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~----sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.+  .|.|+|++..+..      ...|+.+..+.    +|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus         7 v~G~P~P--~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           7 VSGVPHP--QIFWKKENESLTH------NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EeEecCC--EEEEEECCEECCC------CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            5777776  8999999887742      34688876332    7999999999999999999987 57888888876

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.57  E-value=5e-14  Score=80.95  Aligned_cols=66  Identities=29%  Similarity=0.484  Sum_probs=52.8

Q ss_pred             CCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      +.+.|.|+| +..+|..++.....++||.+.    .+++|.|.+++.+|+|.|+|++.+.+..+..+.|.|
T Consensus        25 p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v   95 (95)
T cd07701          25 DNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV   95 (95)
T ss_pred             CceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence            346799998 345665555444578899874    458999999999999999999999888899999876

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.55  E-value=6.6e-14  Score=77.14  Aligned_cols=64  Identities=25%  Similarity=0.372  Sum_probs=51.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.+  .|.|+|++..+..      ...|+.+..+    .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus         7 v~G~P~P--~v~W~k~~~~i~~------~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           7 VSAIPPP--QIFWKKNNEMLTY------NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EeecCCC--eEEEEECCEECCC------CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            5677765  8999999887753      2457877522    37999999999999999999987 58888888875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.55  E-value=6.4e-14  Score=76.27  Aligned_cols=63  Identities=25%  Similarity=0.449  Sum_probs=51.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+.       +..|+.+..+..|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus         8 ~~G~P~--p~v~W~k~g~~~~-------~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           8 VTGKPT--PTVKWVKNGDMVI-------PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEeCC--CEEEEEECCeECC-------CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            456665  4899999887653       346788877889999999999999999999987 57778877765

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=4.2e-14  Score=77.41  Aligned_cols=63  Identities=27%  Similarity=0.545  Sum_probs=51.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus        11 ~~g~P~--p~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          11 AQGYPQ--PVIAWTKGGSQLS-------VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCEecC--CEEEEEECCEECC-------CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            345555  4799999887664       346777777889999999999999999999987 57888888875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=1.3e-13  Score=78.02  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=50.8

Q ss_pred             cEEEEEeCCE-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIA-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++. .+...........||.+..+++|+|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        16 p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          16 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence            5799999653 2222111123467998887889999999999999999999986 6888999999976

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=9.6e-14  Score=74.90  Aligned_cols=61  Identities=26%  Similarity=0.549  Sum_probs=48.9

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      .|.|.  +.+.|+|++..+        +.+|+.+..+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus         8 ~g~P~--p~v~W~k~~~~~--------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           8 GGDPV--PTVLWRKEDGEL--------PKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             ccCCC--CEEEEEECCccC--------CCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            45544  479999985543        346888888889999999999999999999987 57777777765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.51  E-value=1.5e-13  Score=74.40  Aligned_cols=61  Identities=20%  Similarity=0.405  Sum_probs=49.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      +.|.|.+  .|.|+|++..+.       ...|+.+..+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|
T Consensus         7 ~~g~P~p--~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           7 AQGDPEP--TITWNKDGVQVT-------ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             ceEeCCC--EEEEEECCEECC-------CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4566654  799999887663       457888877889999999999999999999987 566666655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.51  E-value=2e-13  Score=74.79  Aligned_cols=65  Identities=25%  Similarity=0.413  Sum_probs=51.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+..     ..+.|+....+++|.|.+++.+|+|.|+|.+.|..  ..+..+.|.|
T Consensus         7 ~~G~P~--p~v~W~k~~~~~~~-----~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           7 ASGNPD--PEITWFKDFLPVDT-----TSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EeEecC--CEEEEEECCEECcc-----CCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            356655  48999998876642     14578888888899999999999999999999874  3477888776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.51  E-value=1.9e-13  Score=74.53  Aligned_cols=57  Identities=25%  Similarity=0.503  Sum_probs=48.8

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.+.|+|++..+.       .++|+.+..+.+|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        16 p~v~W~k~~~~~~-------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          16 PTISWSKGTELLT-------NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CEEEEEECCEEcc-------cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            5899999887764       457888888889999999999999999999987 57788888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.50  E-value=4.5e-13  Score=73.04  Aligned_cols=63  Identities=22%  Similarity=0.416  Sum_probs=50.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.+  .+.|+|++..+.       .++|+.+.   ....|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus         8 ~~G~P~p--~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           8 ISGRPTP--TVTWSKDGKPLK-------LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EeeeCCC--eEEEEECCEEcC-------CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            5677765  799999988773       34677665   3578999999999999999999987 57777777765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.50  E-value=4.3e-13  Score=75.69  Aligned_cols=64  Identities=20%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.+  .|.|+|++..+..      .++|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus        19 ~~G~P~P--~v~W~k~~~~i~~------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          19 ISGEPAP--TVTWSRGDKAFTE------TEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             EeecCCC--eEEEEECCEECcc------CCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            4666654  8999999887753      24578765   3478999999999999999999987 57777777765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.49  E-value=5e-13  Score=77.10  Aligned_cols=66  Identities=15%  Similarity=0.290  Sum_probs=53.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|-|.  +.|.|+|++..|.       .+.|+.+.   ....|.|.+++.+|+|.|+|.+.|. +..+..++|.|+++
T Consensus        24 ~~G~p~--p~v~W~kdg~~l~-------~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~   93 (98)
T cd05762          24 VTGTQP--ITCTWMKFRKQIQ-------EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDK   93 (98)
T ss_pred             EcccCC--CceEEEECCEEec-------CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecC
Confidence            355554  5799999998884       34567665   3578999999999999999999988 68889999999864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.49  E-value=2.9e-13  Score=74.04  Aligned_cols=63  Identities=21%  Similarity=0.434  Sum_probs=48.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      -+.|+|.+  .+.|+|++..|..       +.++  ....+|.|.++..+|+|.|+|.+.|. +..+..++++|+
T Consensus         6 ~v~G~P~P--~v~W~k~g~~l~~-------~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           6 KYYGYPPP--EVKWYKNGQLIVL-------NHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             EEEEeCCC--EEEEEECCEECCC-------CCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            46788875  7899999988742       2222  34568999999999999999999987 466777777664

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.47  E-value=7.8e-13  Score=75.32  Aligned_cols=66  Identities=26%  Similarity=0.496  Sum_probs=50.8

Q ss_pred             CCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      +.+.+.|++ +..++..+......++||.+.    .+++|.|.+|+.+|+|.|+|++.+..+.+..+.|+|
T Consensus        25 ~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v   95 (95)
T cd05717          25 DNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV   95 (95)
T ss_pred             CCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence            346899987 344554444333456899874    457999999999999999999998777788888876

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.46  E-value=1e-12  Score=71.62  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=47.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.+  .+.|+|++..+..       +.|+. ....+|.|.+++.+|+|.|+|.+.|. +..+...+++|+
T Consensus         7 v~g~P~p--~v~W~k~g~~l~~-------~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           7 VKAYPPP--EIQWYKNGKLISE-------KNRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             EEEeCCC--EEEEEECCEECCC-------CCEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4677764  7899999887743       24553 35689999999999999999999986 455666666553

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=6.9e-13  Score=72.55  Aligned_cols=66  Identities=23%  Similarity=0.493  Sum_probs=49.7

Q ss_pred             EeccCCCCcEEEEEeCCEE-EEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAI-LTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.+  .|+|+|++.. +..     ..+.|+.+. .+..|.|.+++.+|+|.|+|.+.|. +..+..++|.|+
T Consensus         7 ~~G~P~P--~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763           7 ATGHPTP--QIAWQKDGGTDFPA-----ARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             cccccCC--EEEEEeCCCccCCc-----ccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            3555554  7999997642 221     234677765 4578999999999999999999986 578888888874

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.45  E-value=1e-12  Score=72.41  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+...     +..+....++..|.|.+++.+|+|.|+|.+.|. +.....+.|+|+
T Consensus        10 a~G~P~--P~i~W~k~g~~i~~~-----~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868          10 ANGNPK--PSISWLTNGVPIEIA-----PTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             eeEeCC--CeEEEEECCEEcccc-----CCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            467765  489999998877532     112222335568999999999999999999998 588899999885

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.44  E-value=1e-12  Score=71.41  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=46.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.+  .+.|+|++..|..         |   .....|.|.++..+|+|.|+|.+.|. +..+...+|+|.
T Consensus         7 v~g~P~P--~v~W~kdg~~l~~---------~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           7 VAAYPPP--EFQWYKDGKLISG---------K---HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             EEEeCCC--EEEEEECCEECcc---------c---CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            5677765  7999999988742         1   13469999999999999999999987 566666666664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.44  E-value=1.3e-12  Score=72.19  Aligned_cols=70  Identities=21%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V   75 (78)
                      ++|.|.+  .|.|+|+. ............++|+.+..+++|.|.+++.+|+|.|+|.+.|. + ..+..+.|+|
T Consensus         7 ~~G~P~P--~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           7 AEGYPPP--TIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CeEeCCC--EEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4566664  89999953 22111111112568898888899999999999999999999987 3 4467777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.44  E-value=1.7e-12  Score=71.32  Aligned_cols=66  Identities=23%  Similarity=0.421  Sum_probs=50.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+....    .+.|+.+ .+++|.|.+++.+|+|.|+|.+.|. +.....++|.|.
T Consensus        10 ~~G~P~--p~i~W~k~g~~i~~~~----~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867          10 VEGIPT--PNITWSINGAPIEGTD----PDPRRHV-SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             eeEeCC--CeEEEEECCEECCCCC----CCceEEe-eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            345655  4899999988775321    2346654 5679999999999999999999986 588888888873

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.43  E-value=2.9e-12  Score=72.52  Aligned_cols=66  Identities=17%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc-------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD-------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~-------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|  .+.|.|.|++..+..      ...||.+..       ..+|.|.++..+|+|.|+|.+.|. +..+..+.|.|
T Consensus        10 ~~g~p--~~~i~W~k~~~~i~~------~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V   81 (88)
T cd05735          10 AHGEK--PIIVRWEKEDRIINP------EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV   81 (88)
T ss_pred             EECCC--CCEEEEeeCCEECCC------CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence            34544  358999998877642      235776541       157999999999999999999998 68889999998


Q ss_pred             Ee
Q psy14103         76 LG   77 (78)
Q Consensus        76 ~g   77 (78)
                      ..
T Consensus        82 ~~   83 (88)
T cd05735          82 QE   83 (88)
T ss_pred             eC
Confidence            74

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=1e-12  Score=71.48  Aligned_cols=63  Identities=24%  Similarity=0.415  Sum_probs=47.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE-EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ-LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.+  .|.|+|++..+..        .|.. ...+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus         7 ~~G~P~P--~v~W~k~~~~~~~--------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           7 AEGLPTP--EVHWDRIDGPLSP--------NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             eeEecCC--eEEEEECCcCCCC--------CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            4566665  8999998755432        2222 346789999999999999999999987 577788887763

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.42  E-value=2.4e-12  Score=73.15  Aligned_cols=67  Identities=15%  Similarity=0.387  Sum_probs=52.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+..      .+.|+.+..+ ..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..|
T Consensus        27 ~~g~P~--p~v~W~k~g~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~   95 (95)
T cd05730          27 ADGFPE--PTMTWTKDGEPIES------GEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK   95 (95)
T ss_pred             ccEeCC--CEEEEEECCEECcC------CCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEeC
Confidence            345554  57999998887643      2356766543 47999999999999999999987 57889999998764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.40  E-value=6.2e-12  Score=68.79  Aligned_cols=66  Identities=23%  Similarity=0.372  Sum_probs=51.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+..+     ...|+.+..+ ..|.|.+++.+|.|.|+|.+.|. +..+.++.|.|.
T Consensus         7 v~g~P~--p~v~W~k~~~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           7 AEGIPL--PRLTWLKNGMDITPK-----LSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             eeecCC--CEEEEEECCEECCCC-----CCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            456665  489999988776432     2357776654 46999999999999999999987 577888888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.40  E-value=4.7e-12  Score=72.95  Aligned_cols=65  Identities=26%  Similarity=0.420  Sum_probs=47.3

Q ss_pred             EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V   75 (78)
                      ++|.|.. +.|.|+| ++..+..      ...|+.+..    ..+|.|.+++.+|+|.|+|.+.|.  +..+.++.|.|
T Consensus        24 v~G~P~~-p~i~W~~~~g~~l~~------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          24 VAGEAKD-KDISWFSPNGEKLTP------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EeCCCCC-CEEEEECCCCcCccc------cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            5676652 5899998 6665532      245776642    268999999999999999999996  35566666655

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.40  E-value=3.1e-12  Score=71.63  Aligned_cols=62  Identities=21%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----E----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----V----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      +.|.|.+  .|+|+|++..|..       ++|+..    .    ..+.|.|.++..+|+|.|+|.|.|. +..+.++.++
T Consensus         7 v~G~P~P--ti~W~kng~~l~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           7 VKGNPKP--TLQWFHEGAILNE-------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EeEeCCC--ceEEEECCEECCC-------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            5677775  8899999988853       233211    1    2468999999999999999999987 5666666554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.40  E-value=2.8e-12  Score=70.66  Aligned_cols=52  Identities=27%  Similarity=0.489  Sum_probs=41.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.|.|.+  .+.|+|++..+..      ...|+.. ...+|.|.+|+.+|+|.|+|.+.+.
T Consensus         7 v~g~P~P--~v~W~kdg~~l~~------~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           7 VKAFPAP--EVIWLKDGLPAAE------KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             EEEcCCC--eEEEEECCEECCC------CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEcc
Confidence            5677765  7899999987743      1246654 4569999999999999999999986

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.40  E-value=2.8e-12  Score=74.53  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccccc-CCCCCEE-EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKV-TPDKRIQ-LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~-~~~~R~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      -+.|+|.+  .|.|+|++..|..+.... ....... .....+|+|.+++.+|+|.|+|.+.|. +..+.++.|.|.
T Consensus        26 ~v~g~P~P--~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          26 EVEAYPPP--QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             EEEEeCCC--ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            36788876  789999998886322110 0000000 011358999999999999999999987 578888888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.39  E-value=4.5e-12  Score=70.76  Aligned_cols=63  Identities=25%  Similarity=0.451  Sum_probs=50.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|  .+.|.|++++..+..       +.|+.+.   ...+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|
T Consensus        24 ~~~~p--~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   24 VSGNP--PPTVTWYKNGRPLTS-------SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEESS--SSEEEEEETTEEEES-------SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEeCC--CCcccccccccceee-------eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            46664  468999999988864       5677765   5789999999999999999999987 36667777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.39  E-value=3.3e-12  Score=73.24  Aligned_cols=68  Identities=28%  Similarity=0.537  Sum_probs=49.1

Q ss_pred             EeccCCCCcEEEEEeC--CEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRG--IAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.  +.|.|+|+  +..+..+.  ...+.|+.+.   ...+|.|.+|+.+|+|.|+|.+.|. +..+..+.|+|
T Consensus        25 ~~G~P~--p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          25 AEGEPI--PEITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             cccCCC--CeEEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            345554  47999983  34443211  1235688876   3468999999999999999999987 57778888875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=4.7e-12  Score=71.84  Aligned_cols=63  Identities=17%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+.       .++|+.+.    ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        25 v~G~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          25 VFGDPD--PEVSWLKNDQALA-------LSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEecCC--CeEEEEECCEECc-------cCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            456655  4799999987774       34566654    2358999999999999999999986 57777777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.39  E-value=4.7e-12  Score=73.67  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             Eec-cCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-c-------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103          4 LSG-LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-D-------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         4 ~~~-~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~-------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      +.| .|.  +.+.|+|++..|..       +.+..+. .       ..+|.|.+|..+|+|.|+|.+.|. +..+.++.|
T Consensus        27 v~g~~P~--p~v~W~Kdg~~i~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L   97 (101)
T cd04975          27 VEAYPPP--PHINWTYDNRTLTN-------KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFEL   97 (101)
T ss_pred             EEecCCC--CccEEEeCCeeCCC-------CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence            556 443  48899999988853       2232222 2       378999999999999999999987 588888888


Q ss_pred             EEE
Q psy14103         74 EIL   76 (78)
Q Consensus        74 ~V~   76 (78)
                      .|.
T Consensus        98 ~V~  100 (101)
T cd04975          98 YVN  100 (101)
T ss_pred             EEE
Confidence            875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.39  E-value=4e-12  Score=72.08  Aligned_cols=68  Identities=28%  Similarity=0.468  Sum_probs=49.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.  +.|.|+|++..+.....  ..+.|+.+.   ...+|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        25 ~~g~p~--p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          25 AEGDPI--PEITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EeEcCC--CcEEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            456654  47899998755543211  235677765   2368999999999999999999987 57788888765

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.39  E-value=4.8e-12  Score=69.84  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+..      ...++.+. .+.+|.|.+++.+|+|.|+|.+.|. +..  +..++|+|..
T Consensus         7 ~~g~P~--p~v~W~k~g~~l~~------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d   76 (77)
T cd05760           7 IDGHPR--PTYQWFRDGTPLSD------GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID   76 (77)
T ss_pred             eeecCC--CcEEEEECCEECCC------CCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence            456655  47999999877643      23466655 4569999999999999999999986 333  4567777653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.38  E-value=4.9e-12  Score=68.87  Aligned_cols=65  Identities=22%  Similarity=0.426  Sum_probs=48.7

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .|.|.  +.|.|++++..+....    .. +.....+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus        11 ~g~P~--p~i~W~~~g~~~~~~~----~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978          11 EGIPQ--PTITWRLNGVPIEELP----PD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             eeeCC--CEEEEEECCEECCCCC----Cc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            45554  4799999887764321    11 223346689999999999999999999987 588888888874

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.38  E-value=7.5e-12  Score=71.62  Aligned_cols=68  Identities=25%  Similarity=0.369  Sum_probs=50.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.  +.|.|+|++..+.....  ..++|+.+..   ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus        26 ~~G~P~--P~v~W~~~~~~~~~~~~--~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          26 ASGDPI--PSITWRTSTRNISSEEK--TLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             eeEeCC--CEEEEEECCccccCCcc--ccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            456665  58999997765543211  1346776653   368999999999999999999987 58888888875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.37  E-value=5.6e-12  Score=67.75  Aligned_cols=62  Identities=23%  Similarity=0.414  Sum_probs=46.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.+  .+.|+|++..+..        .|.... ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus         7 ~~g~P~p--~v~W~k~~~~~~~--------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           7 AEGLPTP--EISWIKIGGELPA--------DRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             eeEecCC--eEEEEECCeECCC--------CceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4677765  7999997765532        233332 4568999999999999999999987 47777777776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.36  E-value=1.2e-11  Score=69.28  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----------EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----------VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----------~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      .+.|.|.+  .|+|+|++..|..+       ++...          ...+.|.|.+++.+|+|.|+|.+.|. +..+...
T Consensus         6 ~v~G~P~P--~v~W~k~g~~i~~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   76 (81)
T cd04971           6 TVRGNPKP--TLTWYHNGAVLNES-------DYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI   76 (81)
T ss_pred             EeEeeCCC--cEEEEECCEECcCC-------CceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence            46777765  78999999887532       22211          12457999999999999999999997 4555555


Q ss_pred             EEE
Q psy14103         72 TLE   74 (78)
Q Consensus        72 ~L~   74 (78)
                      .|+
T Consensus        77 ~~~   79 (81)
T cd04971          77 SAH   79 (81)
T ss_pred             Eee
Confidence            543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.36  E-value=5.3e-12  Score=71.37  Aligned_cols=63  Identities=21%  Similarity=0.467  Sum_probs=47.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.+  .|.|+|++..+.       ...|+.. .+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus        25 ~~G~P~P--~v~W~k~~~~~~-------~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          25 ALGNPVP--VIRWRKILEPMP-------ATAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ   88 (88)
T ss_pred             ecccCCC--EEEEEECCcCCC-------CCCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence            4566654  899999775543       2334443 4568999999999999999999987 578888888774

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.36  E-value=9.5e-12  Score=67.66  Aligned_cols=62  Identities=23%  Similarity=0.361  Sum_probs=47.6

Q ss_pred             eccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      .|.|.  +.|.|++ ++..+.       ...|+....+++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus        11 ~g~P~--p~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          11 RGDPE--PAIHWISPDGKLIS-------NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             cCcCC--CEEEEEeCCCEEec-------CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            34443  5899997 566653       346777777889999999999999999999986 46667777664

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=9.6e-12  Score=69.06  Aligned_cols=60  Identities=22%  Similarity=0.498  Sum_probs=47.4

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V   75 (78)
                      +.+.|.|+|++..+..      .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. + ..+..+.|.|
T Consensus        25 p~p~i~W~k~g~~~~~------~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          25 PEPTVSWRKDGQPLNL------DNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             CCCEEEEEECCEECCC------CCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            3468999998877643      356887777889999999999999999999987 3 3456666654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.34  E-value=1.5e-11  Score=70.13  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=45.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      .+.|.|+|++..+.        .+|+.+. .+.+|.|.+++.+|+|.|+|.+.|..  ..+..+.|.|
T Consensus        31 ~p~i~W~kng~~l~--------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          31 ATYIWWVNNGSLLV--------PPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCEEEEEECCEECC--------CCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            57899999887663        3567665 45799999999999999999999873  4567777776

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.34  E-value=1.9e-11  Score=70.03  Aligned_cols=62  Identities=27%  Similarity=0.444  Sum_probs=46.2

Q ss_pred             EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      ++|.|.   .|.|+| ++..+.       ...|+.+..++   +|.|.+++.+|+|.|+|.+.|..  ..+.++.|+|
T Consensus        24 ~~G~P~---~v~W~k~~g~~~~-------~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          24 AIGEPE---SIDWYNPQGEKIV-------SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEeCC---eEEEEeCCCeEec-------CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            567664   689998 455553       34788876444   89999999999999999999874  3356666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.34  E-value=1.2e-11  Score=68.23  Aligned_cols=61  Identities=18%  Similarity=0.329  Sum_probs=44.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      +.|.|.  +.|.|+|+...+.       .++|+.+.   ....|.|.+++.+|+|.|+|.+.|. +.....+.+
T Consensus        10 ~~g~P~--p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743          10 ATGVPT--PIINWRLNWGHVP-------DSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             EEEecC--CEEEEEECCeECC-------CCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            456665  5899999876553       35678765   3478999999999999999999986 444444443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.33  E-value=1.4e-11  Score=68.45  Aligned_cols=65  Identities=15%  Similarity=0.315  Sum_probs=47.3

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +|.|  .+.|.|+|++..+..+.    ...++.+. ..++|.|.+++.+|+|.|+|.+.|. +..+..++|+|
T Consensus        19 ~g~P--~p~i~W~k~g~~l~~~~----~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          19 AGNP--TPTMRWLKNGKEFKQEH----RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             CCCC--CCEEEEEECCEECCCCC----ceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            4544  45899999987764321    11223332 5678999999999999999999986 57777777765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.33  E-value=1.1e-11  Score=68.68  Aligned_cols=56  Identities=20%  Similarity=0.426  Sum_probs=44.2

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|+|++..|.       .+.|+.+. +.+|.|.+++.+|+|.|+|.+.+. +..+..+.|+|
T Consensus        23 ~~v~W~k~g~~l~-------~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          23 QSINWTKDGVQLG-------ENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             ceEEEeeCCcCCC-------CCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            4799999987763       35678765 458999999999999999999875 46666666654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.32  E-value=2.8e-11  Score=69.35  Aligned_cols=47  Identities=26%  Similarity=0.527  Sum_probs=37.8

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|.|+|++..+..        .+..+..+..|.|.+|+.+|+|.|+|.+.+.
T Consensus        28 ~~p~i~Wyk~~~~i~~--------~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757          28 TLPPVQWYKDCKLLEG--------DRKRFVKGSKLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             CCCcEEEeECCEECCC--------CccEEecCCEEEEeeCChhhCEEEEEEEEec
Confidence            4578999999987742        2232337789999999999999999999975

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.32  E-value=1.4e-11  Score=69.07  Aligned_cols=62  Identities=27%  Similarity=0.457  Sum_probs=48.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.  +.+.|+|++..+.       .+.|+.+ .+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        23 ~~g~p~--p~v~W~k~g~~~~-------~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          23 ASGNPR--PAYRWLKNGQPLA-------SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             eeEeCC--CEEEEEECCEECC-------CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            456664  5899999888764       3457765 4568999999999999999999987 46677777764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.31  E-value=1.1e-11  Score=71.20  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.+.|.|+|++..+....   ....|+.. .++.|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus        32 p~~~v~Wyk~~~~~~~~~---~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          32 PGLNLTWYKSDGKTPIPT---EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             CCceEEEEEcCCCCcccc---cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            456899999765432210   12356644 4689999999999999999999986 57778887765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.31  E-value=2.2e-11  Score=66.95  Aligned_cols=66  Identities=18%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             eccCCCCcEEEEEeCC---E-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGI---A-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~---~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +|.|.  +.|.|+|+.   . .+....   ....++.....++|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus        11 ~g~P~--p~v~W~k~~~~~~~~~~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          11 TGRPP--PEITWEKQVHGKENLIMRPN---HVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             cccCC--CcEEEEecCCCCcceeecCC---cccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            45444  479999952   1 111100   1124566667789999999999999999999986 57777777765

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.30  E-value=4.8e-11  Score=67.60  Aligned_cols=61  Identities=25%  Similarity=0.457  Sum_probs=46.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      +.|.|.  +.+.|+|++..+.       .+.|+.+..   ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|
T Consensus        27 ~~g~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          27 VDGEPA--PTVTWMREGQIIV-------SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EeecCC--CEEEEEECCEECC-------CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            345565  4799999887663       356787752   469999999999999999999986 466666555

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.30  E-value=1.1e-11  Score=67.92  Aligned_cols=64  Identities=20%  Similarity=0.395  Sum_probs=44.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|.  +.+.|+|++..+...      ..+.......+|.|.+++.+|+|.|+|.+.|. +..+..+.|+|
T Consensus        18 ~~g~p~--p~i~W~k~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          18 ASGNPR--PDITWLKDNKPLTPT------EIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eeEeCC--CcEEEEECCcCCcCC------ccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            455554  468999987655321      11121224579999999999999999999986 46666666654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.30  E-value=2.8e-11  Score=67.93  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=46.1

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .|.|.  +.|.|+|++..+.       ...++. ..+..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        26 ~g~P~--p~v~W~k~~~~~~-------~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          26 LGNPV--PQIKWRKVDGSMP-------SSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             eEeCC--CEEEEEECCCcCC-------CccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            45544  4799999664432       123333 46689999999999999999999987 577888888773

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.27  E-value=6.9e-11  Score=67.26  Aligned_cols=63  Identities=16%  Similarity=0.289  Sum_probs=46.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--c--CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--D--GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~--~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.+.|+|++..+.       .++||.+.  .  ..+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus        25 v~g~P~--p~i~W~k~~~~~~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          25 VFGNPD--PEVIWFKNDQDIE-------LSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEeCC--CeEEEEECCEECC-------CCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            345554  5799999876653       34666553  2  248999999999999999999986 46677776654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.25  E-value=4.8e-11  Score=67.42  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .+|.|.+|+.+|+|.|+|.+.|. +.....+.|.|+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~   90 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL   90 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence            58999999999999999999987 588888999884

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.25  E-value=8.2e-11  Score=66.94  Aligned_cols=62  Identities=27%  Similarity=0.419  Sum_probs=44.1

Q ss_pred             EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V   75 (78)
                      ++|.|   +.|.|++ ++..+.       ..+|+.+..    ..+|+|.+++.+|+|.|+|.+.|. + ..+.++.|+|
T Consensus        24 ~~G~p---~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          24 VIGEP---KDISWFSPNGEKLV-------TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             eEeeC---CeEEEECCCCCEec-------cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            56764   2799997 555543       234555442    258999999999999999999986 3 4566666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.25  E-value=1.1e-10  Score=68.36  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCC-CCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQ-TTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      +.|.|.  +.+.|.|++..|..      .++||.+.       ...+|+|.++. .+|.|.|+|.+.|. +..+..+.|.
T Consensus        32 a~G~P~--p~i~W~k~g~~l~~------~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~  103 (109)
T cd05773          32 AQGVPR--VQFRWAKNGVPLDL------GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLV  103 (109)
T ss_pred             CcccCC--CEEEEEECCEECCC------CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEE
Confidence            345554  58999999887742      24577533       13689999997 69999999999987 5888999998


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |..
T Consensus       104 ~~~  106 (109)
T cd05773         104 STS  106 (109)
T ss_pred             ecC
Confidence            865

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.24  E-value=7.9e-11  Score=64.44  Aligned_cols=59  Identities=22%  Similarity=0.459  Sum_probs=41.7

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      +.+.+.|+|++..+....   ....|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+.++
T Consensus        12 p~~~~~W~~~g~~i~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895          12 PSLRFKWFKNGKEIGAKN---KPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CCCceEEEECCcccccCC---CCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            346899999887775321   123455443   3478999999999999999999986 3444443

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.24  E-value=5.2e-11  Score=67.79  Aligned_cols=60  Identities=23%  Similarity=0.240  Sum_probs=45.8

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc----CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL----EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~L~V~g   77 (78)
                      .+.|.|.|++..|..      ...|+.+ .++.|.|.+|+.+|+|.|+|.+...    ......+++.+.|
T Consensus        24 ~~~i~W~~ng~~i~~------~~~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~~~~~~~~~~~   87 (87)
T cd05873          24 LARVVWKFDGKVLTP------ESAKYLL-YRDGLLIFNASEADAGRYQCLSVEKSKAKLFTQTVAKYVLEG   87 (87)
T ss_pred             CCeEEEEECCEECCC------CCceEEE-ECCcEEEeCCCHHHCEEEEEEEEecccCceeEeEEEeeeecC
Confidence            468999999988753      2357765 4578999999999999999999976    4555556655543

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.23  E-value=1.9e-10  Score=64.87  Aligned_cols=63  Identities=19%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE---EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL---VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~---~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+..       ..+...   ....+|.|.+++.+|.|.|+|.+.|. +..+..++|.|
T Consensus        24 ~~G~P~--p~v~W~~~g~~~~~-------~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          24 AEGSPL--PKVEWIIAGLIVIQ-------TRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             EEEcCC--CeEEEEECCEEccC-------CccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            566664  58999998876632       122222   24568999999999999999999987 57788888765

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.23  E-value=3.8e-11  Score=69.36  Aligned_cols=63  Identities=21%  Similarity=0.386  Sum_probs=46.2

Q ss_pred             CCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-C----CceEEEEEEEE
Q psy14103          8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-E----PKEITHTLEIL   76 (78)
Q Consensus         8 ~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~----~~~~~~~L~V~   76 (78)
                      +..++.|.|+|+...|..      .+.|+... +...|.|.+|+.+|+|.|+|++.+. +    ..+....|.|+
T Consensus        26 ~~~~~~v~WYKd~~~l~~------~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v~   94 (95)
T cd05897          26 NRTDVELQWYKDSVLLDK------DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRIV   94 (95)
T ss_pred             CCCCCcEEEccCCEECcC------CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEEc
Confidence            455678999999987753      23456553 4467999999999999999999974 2    44555666554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.22  E-value=9.6e-11  Score=66.30  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ...|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~   90 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL   90 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence            468999999999999999999987 577888888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.22  E-value=9.7e-11  Score=66.61  Aligned_cols=64  Identities=28%  Similarity=0.368  Sum_probs=47.3

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccC-----CCCCCEEEEEEeecc-C--CceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDL-----QTTDAGSYQCQIGTL-E--PKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v-----~~~D~G~Y~C~~~~~-~--~~~~~~~L~V   75 (78)
                      .|.|  .+.|.|+|++..+...     .+.|+.+..+++|.|.++     ..+|+|.|+|.+.|. .  ..+..++|.|
T Consensus        24 ~g~P--~p~i~W~k~g~~l~~~-----~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          24 EGEP--PPKIEWKKDGVLLNLV-----SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             ccCC--CCEEEEEECCeECccc-----cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            4454  5799999998877532     234666677788999888     589999999999987 4  3366777664

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.21  E-value=3.4e-10  Score=62.59  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~   65 (78)
                      +.|.|.  +.|.|+|++..+..     ..++|+.+. .+++|.|.+++.    +|+|.|+|.+.|..
T Consensus         7 ~~G~P~--P~v~W~k~g~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~   66 (77)
T cd05875           7 AKGNPV--PTFQWTRNGKFFNV-----AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNL   66 (77)
T ss_pred             ccccCC--CEEEEEECCEEccC-----cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEecc
Confidence            456654  58999998876632     256788774 678999998753    46999999999974

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.19  E-value=2.3e-10  Score=63.03  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=41.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~   65 (78)
                      ++|.|.  +.|.|+|++..+..+     .+.|+.+. .+++|.|.+++.    +|+|.|+|.+.|..
T Consensus         7 ~~G~P~--P~v~W~k~g~~l~~~-----~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~   66 (77)
T cd05733           7 AKGNPP--PTFSWTRNGTHFDPE-----KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNEL   66 (77)
T ss_pred             CcccCC--CeEEEEECCeECCCC-----CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCC
Confidence            345554  489999998776432     34677664 578999999864    79999999999974

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.19  E-value=3.4e-10  Score=67.07  Aligned_cols=67  Identities=24%  Similarity=0.386  Sum_probs=49.7

Q ss_pred             CcEEEEEeC-----CEEE-Eecccc-c--CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103         11 NYVLAWKRG-----IAIL-TAGSTK-V--TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~~~~-~--~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      ...|.|+|.     ..++ ..+... .  .-.+|+++.      .+.+|+|.+++.+|+|.|.|.+... ...+..+.|.
T Consensus        28 ~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          28 SPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             CCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence            569999982     2333 232221 1  112499885      5799999999999999999999977 5788999999


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |.|
T Consensus       108 v~g  110 (112)
T cd05900         108 VKG  110 (112)
T ss_pred             EEe
Confidence            987

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.17  E-value=5e-10  Score=65.66  Aligned_cols=73  Identities=22%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             eEeccCCCCcEEEEEeC-----C-EEEEecc--cc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--Cce
Q psy14103          3 YLSGLPDKNYVLAWKRG-----I-AILTAGS--TK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKE   68 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~-----~-~~l~~~~--~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~   68 (78)
                      .+.++|..-..+.|+|+     . .++....  ..    ..-.+|..+..+++|.|++++.+|+|.|+|++.+..  ..+
T Consensus        19 ~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~   98 (105)
T cd05774          19 LVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQ   98 (105)
T ss_pred             EecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEE
Confidence            45667776679999994     2 2222111  11    124689999999999999999999999999999764  455


Q ss_pred             EEEEEEE
Q psy14103         69 ITHTLEI   75 (78)
Q Consensus        69 ~~~~L~V   75 (78)
                      ..++|.|
T Consensus        99 ~~v~l~V  105 (105)
T cd05774          99 ATVHLQV  105 (105)
T ss_pred             EEEEEEC
Confidence            6655554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>KOG3513|consensus

Probab=99.16  E-value=1.1e-10  Score=88.57  Aligned_cols=61  Identities=25%  Similarity=0.427  Sum_probs=53.3

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.++|+|++..+       ...+||.+..+++|.|.+++.+|+|.|+|.+.|+ +..+.+++|.|.-
T Consensus       454 P~p~~~W~k~~~~~-------~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd  515 (1051)
T KOG3513|consen  454 PKPKVSWLKGGEKL-------LQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD  515 (1051)
T ss_pred             CcceEEEEcCCccc-------ccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec
Confidence            35789999977643       3579999999999999999999999999999998 6899999999863

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.16  E-value=1e-09  Score=63.45  Aligned_cols=45  Identities=31%  Similarity=0.466  Sum_probs=38.3

Q ss_pred             CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+|+.+.    .+.+|.|.+++.+|+|.|.|.+.+. +..+..++|.|.|
T Consensus        55 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          55 QGRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             cCcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            4688874    3579999999999999999999876 4778899999887

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.15  E-value=6.7e-10  Score=63.52  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=45.3

Q ss_pred             CCCCcEEEEEeCC--EEE--Eeccccc------CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC-CceEE
Q psy14103          8 PDKNYVLAWKRGI--AIL--TAGSTKV------TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEIT   70 (78)
Q Consensus         8 ~~~~~~v~W~k~~--~~l--~~~~~~~------~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~   70 (78)
                      +.....|.|+|..  .++  .......      .-.+|+.+.      .+.+|+|.+++.+|+|.|+|.+.+.+ ..+..
T Consensus        15 ~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~   94 (100)
T cd05713          15 SAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEAT   94 (100)
T ss_pred             CCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEE
Confidence            3345689999843  222  2211110      112588764      35899999999999999999999754 56677


Q ss_pred             EEEEE
Q psy14103         71 HTLEI   75 (78)
Q Consensus        71 ~~L~V   75 (78)
                      +.|+|
T Consensus        95 i~l~v   99 (100)
T cd05713          95 VELKV   99 (100)
T ss_pred             EEEEE
Confidence            77766

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.15  E-value=5.7e-10  Score=63.87  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=45.9

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC-------eEEEEccCCCCC-CEEEEEEeecc-CCceEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG-------YNLQITDLQTTD-AGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~-------~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      .|.|.+ ..|.|.+++..+..+     .++||.+...       .+|.|.+++.+| .|.|+|.+.|. +..+..++|
T Consensus        26 ~g~P~P-~~v~W~~~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          26 FSTPPP-DRIVWTWKENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             cccCCC-CEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            444443 158999988777532     2468877633       489999999955 89999999987 466676665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.15  E-value=8.9e-10  Score=64.74  Aligned_cols=67  Identities=25%  Similarity=0.482  Sum_probs=49.5

Q ss_pred             CcEEEEEeC-----CEEE-Eecccc-c--CCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103         11 NYVLAWKRG-----IAIL-TAGSTK-V--TPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~~~~-~--~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      ...|.|+|.     ..++ ..+... .  .-.+|+++.      .+.+|+|++++.+|+|.|.|.+... ...+..+.|+
T Consensus        26 ~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~  105 (110)
T cd05878          26 SPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLE  105 (110)
T ss_pred             CCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEE
Confidence            578999983     1222 222221 1  223688873      5689999999999999999999976 5889999999


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |.|
T Consensus       106 V~g  108 (110)
T cd05878         106 VTG  108 (110)
T ss_pred             EEE
Confidence            987

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.14  E-value=4.7e-10  Score=60.88  Aligned_cols=58  Identities=21%  Similarity=0.368  Sum_probs=41.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      +.|.|.+  .|.|+|++..+.       ...|+.. ....|.|.+++  |+|.|+|.+.|. +..+..++|
T Consensus        10 a~G~P~P--~v~W~k~g~~l~-------~~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          10 AVGAPMP--YVKWMKGGEELT-------KEDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             eeecCCC--EEEEEECCEECC-------Cccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            4566664  899999887663       2345543 34589999974  899999999987 466666665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.14  E-value=2.5e-10  Score=63.56  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.+...+.|.|.+.+..+.....   ...|...    ....+|.|.+++.+|+|.|+|.+.+. +..+.++.|.|
T Consensus        10 ~~g~~~~~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          10 VLTELNEGVDFQWTYPGKKRGRGKS---MVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEeCCCccEEEEEecCCcccCCceE---eecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            4555445678999875433221110   0111111    13468999999999999999999987 46677777765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.14  E-value=5.2e-10  Score=63.94  Aligned_cols=62  Identities=24%  Similarity=0.411  Sum_probs=44.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC--CceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE--PKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~--~~~~~~~L~   74 (78)
                      ++|.|.  +.++|+|++..+..      ...|+.+. ++.|.|.++. .+|+|.|+|.+.|..  ..+..++|.
T Consensus        28 a~G~P~--P~i~W~k~~~~i~~------~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          28 ARANPF--PIYKWRKNNLDIDL------TNDRYSMV-GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CccCCC--CEEEEEECCEEccC------CCCeEEEE-CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            345655  48999998876632      24577654 5799999985 699999999999873  334555553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.14  E-value=5.6e-10  Score=60.43  Aligned_cols=56  Identities=20%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      +.+.|+|++..+.....    ...+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus        14 p~~~W~k~g~~l~~~~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750          14 LRFKWFKDGKELNRKNK----PRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             ceEEEEcCCeeccccCC----cceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            68999998877754211    1112232   3578999999999999999999986 4544444

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.13  E-value=8.2e-10  Score=63.08  Aligned_cols=54  Identities=28%  Similarity=0.359  Sum_probs=40.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~   65 (78)
                      +.|.|.  +.|+|+|++..|..+     .+.|+.+ .+++|.|.++. .+|+|.|+|.+.|..
T Consensus        28 ~~G~P~--P~i~W~k~g~~l~~~-----~~~~~~~-~~g~L~i~~~~~~~D~G~Y~C~A~N~~   82 (94)
T cd05848          28 ARGNPV--PTYRWLRNGTEIDTE-----SDYRYSL-IDGNLIISNPSEVKDSGRYQCLATNSI   82 (94)
T ss_pred             eeecCC--CEEEEEECCeECccC-----CCceEEe-eCCeEEEccCCccCcCEEEEEEEEcCC
Confidence            456655  489999998777432     2346654 45799999985 699999999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.12  E-value=1.4e-09  Score=60.07  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=40.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCC----CCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQT----TDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~----~D~G~Y~C~~~~~~   65 (78)
                      +.|.|.  +.|.|+|++..+..     ..++++.+. .+++|.|..++.    .|+|.|+|.+.|..
T Consensus         7 a~G~P~--P~i~W~k~g~~l~~-----~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~   66 (77)
T cd05874           7 AKGKPP--PSFSWTRNGTHFDI-----DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNER   66 (77)
T ss_pred             CcccCC--CeEEEEECCeECCC-----cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCC
Confidence            345544  58999998876632     234667655 578999998875    38999999999974

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.11  E-value=1.3e-09  Score=62.99  Aligned_cols=38  Identities=37%  Similarity=0.554  Sum_probs=34.2

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.+|+|.+++.+|+|.|.|.+.+. ...+..++|.|.|
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            5789999999999999999999976 4668999999987

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.09  E-value=1.8e-09  Score=61.98  Aligned_cols=66  Identities=29%  Similarity=0.567  Sum_probs=43.2

Q ss_pred             CCcEEEEEeCCEE-E-Eec----ccccCCC----CCEEEEc-CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAI-L-TAG----STKVTPD----KRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~-l-~~~----~~~~~~~----~R~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      ....|.|+|.... + ...    ......+    .|+.+.. +++|+|.+++.+|+|.|.|++.+.+......++.|
T Consensus        18 ~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L   94 (97)
T cd05775          18 EIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTL   94 (97)
T ss_pred             EEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEE
Confidence            3468999985422 2 222    1111122    4666654 59999999999999999999997665554544443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.08  E-value=1.8e-09  Score=60.59  Aligned_cols=43  Identities=23%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEE
Q psy14103         32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLE   74 (78)
Q Consensus        32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~   74 (78)
                      -.+|+.+..+++|+|.+++.+|+|.|+|++....  +......|.
T Consensus        47 ~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          47 YSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             cCCeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            3578888888999999999999999999999764  444444444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.07  E-value=1.6e-09  Score=60.99  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEc-----cCCCCCCEEEEEEeecc-CC-ceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQIT-----DLQTTDAGSYQCQIGTL-EP-KEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~-----~v~~~D~G~Y~C~~~~~-~~-~~~~~~L~V   75 (78)
                      .|.|.  +.|.|+|++..+.....  ....+..+..++++.+.     .++.+|+|.|+|.+.|. +. .+..+.|.|
T Consensus        26 ~g~P~--p~i~W~k~g~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          26 EGRPT--PTIQWLKNGQPLETDKD--DPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CcCCC--CEEEEEECCEECccccC--CCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            44443  58999999887754211  01233334444443322     33789999999999987 44 678888877

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.05  E-value=1.5e-09  Score=60.94  Aligned_cols=62  Identities=24%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ...+.|+|++..+.....   ...|+... ...|.|.+++.+|+|.|+|.+.+..  ....+.+|.|.
T Consensus        24 ~~~i~W~k~~~~~~~~~~---~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          24 LASVVWLFQGGPLQRKEE---PEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             CceEEEEECCcccccccC---cCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            458999998765533210   12466554 4569999999999999999998653  55566677664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.05  E-value=4.9e-09  Score=59.79  Aligned_cols=61  Identities=31%  Similarity=0.379  Sum_probs=43.8

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCC-CCCCEEEEEEeeccC--CceEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQ-TTDAGSYQCQIGTLE--PKEITHTL   73 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~--~~~~~~~L   73 (78)
                      .|.|.  +.++|+|++..+...     .+.|+.+. +++|.|.++. .+|+|.|+|.+.|..  ..+..+.|
T Consensus        29 ~g~P~--p~i~W~~~g~~l~~~-----~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          29 RASPP--ATYRWKMNGTEIKFA-----PESRYTLV-AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             eeCCC--CEEEEEECCEECccC-----CCceEEEE-CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            35544  589999998877532     34577665 5789999865 599999999999873  33455555

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.04  E-value=2.8e-09  Score=58.49  Aligned_cols=62  Identities=19%  Similarity=0.399  Sum_probs=43.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +|.|.  +.|.|+|++..+..       +.++...    ..+.|.|.+++.+|+|.|+|.+.+. +..+.+..|+|
T Consensus        19 ~~~p~--~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          19 SGNPR--PTITWLKDGKPFKK-------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             CCCCC--CeEEEEECCEECcc-------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            44443  57999998766542       2223221    3468999999999999999999986 45667766654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=99.04  E-value=4.2e-09  Score=61.14  Aligned_cols=42  Identities=21%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +|..+.    .+.+|.|++++.+|+|.|.|.+.+.+  ..+..+.|.|
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            677665    46999999999999999999999854  6677777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.04  E-value=1.7e-09  Score=70.82  Aligned_cols=47  Identities=30%  Similarity=0.528  Sum_probs=39.6

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+.|.|+|+++.|.       .++|+.+. .+.+|.|.+|+.+|+|.|+|.+...
T Consensus       163 ~p~I~WyKng~~l~-------~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        163 DYTLTWYKNGNIVL-------YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CceEEEEECCEECC-------CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence            57999999998874       35688776 4468999999999999999999963

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=99.03  E-value=9.5e-09  Score=59.29  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             CCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEE
Q psy14103         34 KRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEI   75 (78)
Q Consensus        34 ~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V   75 (78)
                      +|..+.     .+.+|+|++|+.+|+|.|+|.+.+.  +..+..+.|.|
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            466554     4789999999999999999999974  35567777766

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.01  E-value=8.2e-10  Score=63.95  Aligned_cols=50  Identities=20%  Similarity=0.306  Sum_probs=37.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.+.|+|+...+..     ..++|..+. .+++|.|.+|+.+|+|.|+|.+.+..
T Consensus        33 ~p~~~W~k~~~~~~~-----~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          33 DLSYRWLLNEFPNFI-----PEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CCEEEEEECCccccc-----ccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence            368999998643321     124444454 58999999999999999999999853

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.97  E-value=1.2e-08  Score=57.79  Aligned_cols=44  Identities=25%  Similarity=0.610  Sum_probs=34.9

Q ss_pred             CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEE
Q psy14103         33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~   76 (78)
                      ..|..+.    .+.+|+|.+|+.+|+|.|.|++.+.  +..+....|.|+
T Consensus        49 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          49 EGRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             CceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence            4566654    4789999999999999999999854  466777777774

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.97  E-value=1.2e-08  Score=59.00  Aligned_cols=43  Identities=19%  Similarity=0.432  Sum_probs=36.8

Q ss_pred             CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +|..+.    .+.+|.|.||+.+|+|.|+|.+.+.|..+..+.+.|.
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            577665    4799999999999999999999998877777777775

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.95  E-value=4.7e-09  Score=59.83  Aligned_cols=63  Identities=21%  Similarity=0.288  Sum_probs=42.8

Q ss_pred             CCcEEEEEeC--CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         10 KNYVLAWKRG--IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      +.+.+.|+|+  +.....   ......|+... +.+|.|.+++++|+|.|+|.+.+..  .....++|+|+
T Consensus        23 p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~-~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          23 PQASVKWLFQRGGDQRKE---EVKTEERLIHT-ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             CCceEEEEEECCCCCccc---cccccccEEEe-cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence            4468999983  211110   11235688664 4679999999999999999998532  34467777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.95  E-value=2.8e-08  Score=59.44  Aligned_cols=68  Identities=21%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             CCcEEEEEeC-----------CEE-EEecccc---cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCc
Q psy14103         10 KNYVLAWKRG-----------IAI-LTAGSTK---VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPK   67 (78)
Q Consensus        10 ~~~~v~W~k~-----------~~~-l~~~~~~---~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~   67 (78)
                      ..+.|.|.|-           ..+ ++.+...   ..-.+|.++.      .+.+|+|.+++.+|+|.|.|.+... ...
T Consensus        26 ~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~  105 (117)
T cd05901          26 EFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDT  105 (117)
T ss_pred             CCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCccc
Confidence            5679999872           122 3333221   1234688774      5799999999999999999999976 577


Q ss_pred             eEEEEEEEEe
Q psy14103         68 EITHTLEILG   77 (78)
Q Consensus        68 ~~~~~L~V~g   77 (78)
                      +..+.|+|.|
T Consensus       106 ~~~v~L~V~G  115 (117)
T cd05901         106 QDTVSLDVSG  115 (117)
T ss_pred             EEEEEEEEEE
Confidence            8999999987

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.94  E-value=7.3e-09  Score=61.18  Aligned_cols=67  Identities=21%  Similarity=0.362  Sum_probs=49.3

Q ss_pred             CcEEEEEeC------CE-E-E-Eeccc-c--cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103         11 NYVLAWKRG------IA-I-L-TAGST-K--VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus        11 ~~~v~W~k~------~~-~-l-~~~~~-~--~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      .+.|.|.|.      .. . + +.+.. .  ..-.+|+++.      .+.+|+|++++.+|+|.|.|.+... ...+..+
T Consensus        23 ~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v  102 (110)
T cd05902          23 GPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTV  102 (110)
T ss_pred             CCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEE
Confidence            589999973      11 1 2 22211 1  1345788875      4789999999999999999999975 4788999


Q ss_pred             EEEEEe
Q psy14103         72 TLEILG   77 (78)
Q Consensus        72 ~L~V~g   77 (78)
                      .|+|.|
T Consensus       103 ~L~V~g  108 (110)
T cd05902         103 PLEVTG  108 (110)
T ss_pred             EEEEEE
Confidence            999987

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.93  E-value=1.8e-08  Score=58.28  Aligned_cols=67  Identities=15%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             CCcEEEEEeC----CEEEEeccc----cc--CCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103         10 KNYVLAWKRG----IAILTAGST----KV--TPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL   73 (78)
Q Consensus        10 ~~~~v~W~k~----~~~l~~~~~----~~--~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L   73 (78)
                      ....|.|.|.    ...+..-..    .+  .-.+|..+.    .+.+|.|.||+.+|+|.|.|.+.+.|  ..+....|
T Consensus        14 ~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l   93 (96)
T cd05887          14 TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTV   93 (96)
T ss_pred             cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEE
Confidence            4468999882    233332111    11  123577663    57899999999999999999998765  66677777


Q ss_pred             EEE
Q psy14103         74 EIL   76 (78)
Q Consensus        74 ~V~   76 (78)
                      .|+
T Consensus        94 ~~~   96 (96)
T cd05887          94 TVL   96 (96)
T ss_pred             EEC
Confidence            663

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.91  E-value=1.6e-08  Score=60.21  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=31.8

Q ss_pred             CCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEE
Q psy14103         34 KRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLE   74 (78)
Q Consensus        34 ~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~   74 (78)
                      +|..+.     ++.+|.|++++.+|+|.|+|++.+.+   .....++|.
T Consensus        67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            477764     67899999999999999999999865   233555554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.89  E-value=4.2e-09  Score=60.86  Aligned_cols=48  Identities=19%  Similarity=0.342  Sum_probs=39.9

Q ss_pred             CcEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103         11 NYVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   65 (78)
                      .+.|.|+++. ..+       ..+.|+.+..+++|.|.+|+.+|+| .|.|.+.+..
T Consensus        33 ~P~i~W~~~~~~~i-------~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          33 PLRIYWMNSDLLHI-------TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             CCEEEEECCCCccc-------cccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            4799999854 323       2578998888899999999999999 8999999864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.88  E-value=5.1e-09  Score=60.27  Aligned_cols=55  Identities=22%  Similarity=0.425  Sum_probs=35.7

Q ss_pred             CCcEEEEEeCCEEEEeccc-------ccCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGIAILTAGST-------KVTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~-------~~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+++.+-...+..       .....+||...      ++++|+|.+++.+|+|.|+|.+.+.
T Consensus        20 ~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~   87 (94)
T cd07690          20 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK   87 (94)
T ss_pred             CCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence            3468999864322111100       01234555543      3578999999999999999999874

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.87  E-value=1.8e-08  Score=56.84  Aligned_cols=48  Identities=33%  Similarity=0.534  Sum_probs=37.1

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCC-CCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-TDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~   64 (78)
                      .+.++|+|++..+...     ...++.+. ++.|.|.++.. +|+|.|+|.+.|.
T Consensus        33 ~p~i~W~k~~~~l~~~-----~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967          33 PPTYRWLMNGTEIDDE-----PDSRYSLV-GGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CCEEEEEECCEECCCC-----CCCCEEEE-CCEEEEecCCccCCCEEEEEEEEcC
Confidence            4589999988776321     34567554 56899999875 9999999999986

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.86  E-value=1.5e-08  Score=59.45  Aligned_cols=63  Identities=13%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      ..|.|+|++..+...........|... .+..|.|.++..+|+|.|+|++.+.. ..+....|+|
T Consensus        41 ~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          41 LSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             ceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            479999976333221110001236644 56799999999999999999999864 6677776665

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.86  E-value=2.3e-08  Score=57.15  Aligned_cols=42  Identities=24%  Similarity=0.463  Sum_probs=33.0

Q ss_pred             CCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +|+.+.    .+.+|+|++|+.+|+|.|.|.+.+.+  ..+..+.|+|
T Consensus        49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            455553    56899999999999999999999765  5566666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.85  E-value=2.4e-08  Score=55.88  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             CeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL   76 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~   76 (78)
                      ..+|.|.+++.+|+|.|+|.+.+..   ..+..+.|+|.
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            4689999999999999999999753   55666676663

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.85  E-value=1.1e-08  Score=56.82  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=37.2

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      ..+.|+|++..|..              ...+|.|.++ .+|+|.|+|++.+. ..+..++|+|
T Consensus        31 ~~~~W~kng~~l~~--------------~~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~V   78 (78)
T cd05752          31 NSTQWYHNGKLLET--------------TTNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLEV   78 (78)
T ss_pred             ccEEEEECCEEeec--------------cCCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEeC
Confidence            35899999877621              3468999999 99999999999874 6666666654

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG4221|consensus

Probab=98.84  E-value=1.3e-08  Score=78.39  Aligned_cols=66  Identities=26%  Similarity=0.538  Sum_probs=55.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +||+|..  .|.|+|++..|..+      +.|+.+....+|.|.+++..|+|.|+|.+.+. ......+.|+|+.
T Consensus       261 vs~~p~p--~v~Wlrng~~i~~d------s~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a  327 (1381)
T KOG4221|consen  261 VSGVPKP--SVKWLRNGEKISVD------SYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA  327 (1381)
T ss_pred             ecCCCCC--ceEEeeCCeeeeec------ceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEc
Confidence            5667665  88999998888753      36888888899999999999999999999975 5778888888874

>smart00410 IG_like Immunoglobulin like

Probab=98.84  E-value=7.9e-08  Score=51.35  Aligned_cols=59  Identities=20%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             CCcEEEEEeC-CEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         10 KNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      ....+.|+++ ...+.       .+.|+.+...   .+|.|.+++.+|+|.|+|.+.+.. .....+.|.|
T Consensus        22 ~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       22 PPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            4578999997 65553       3567777633   799999999999999999999653 4455566655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.84  E-value=7.9e-08  Score=51.35  Aligned_cols=59  Identities=20%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             CCcEEEEEeC-CEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         10 KNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      ....+.|+++ ...+.       .+.|+.+...   .+|.|.+++.+|+|.|+|.+.+.. .....+.|.|
T Consensus        22 ~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       22 PPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            4578999997 65553       3567777633   799999999999999999999653 4455566655

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.82  E-value=1.5e-08  Score=56.38  Aligned_cols=54  Identities=33%  Similarity=0.473  Sum_probs=39.2

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      ..+.+.|+|++..+.         .+. ...+.+|.|.+++.+|+|.|+|.+.|. +..+..++|
T Consensus        30 ~~~~i~W~~~~~~~~---------~~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          30 PAYTLVWTRVGGGLP---------SRA-MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CCcEEEEEECCCcCC---------Ccc-cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            357899999664332         122 224579999999999999999999986 466666654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>KOG3513|consensus

Probab=98.82  E-value=1.8e-08  Score=76.90  Aligned_cols=67  Identities=25%  Similarity=0.407  Sum_probs=54.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|-|.  +.+.|+|++..|..+    ..++|+.+. ++.|+|++|+.+|+|.|.|.+.|+ +..-..+.|.|+.
T Consensus       355 a~g~P~--p~v~WlkNg~pl~~~----~r~~~~~i~-~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a  422 (1051)
T KOG3513|consen  355 ASGKPN--PTVKWLKNGEPLEPA----ERDPRYKID-DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA  422 (1051)
T ss_pred             ecCCCC--CceEEeeCCeecCcc----CCCcceEEe-CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc
Confidence            345555  488999999887532    356778664 679999999999999999999998 5778999999874

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.80  E-value=3.6e-08  Score=56.82  Aligned_cols=55  Identities=22%  Similarity=0.379  Sum_probs=39.0

Q ss_pred             CCcEEEEEeCC-----EE-EEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGI-----AI-LTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~-----~~-l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|..     .. +..... .....+||++.     ..++|.|.+++.+|+|.|.|.+.+.
T Consensus        26 ~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          26 TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            45689999821     22 222111 11357899875     4689999999999999999999864

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.80  E-value=7e-08  Score=54.28  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ..+|.|.+++.+|+|.|+|.+.+.. .......|.|.
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            4689999999999999999999863 55666666663

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.79  E-value=5.2e-08  Score=55.46  Aligned_cols=57  Identities=25%  Similarity=0.490  Sum_probs=40.0

Q ss_pred             CCcEEEEEeC-----CEEEE-ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103         10 KNYVLAWKRG-----IAILT-AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~-~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      ....+.|.|.     ...|. .+.......+|+++.     ...+|+|.+++.+|+|.|.|.+...+.
T Consensus        21 ~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   88 (98)
T cd05716          21 RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDGD   88 (98)
T ss_pred             CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCCC
Confidence            4568899982     23332 122122346899875     347999999999999999999987553

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.79  E-value=5.1e-08  Score=57.61  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.6

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.+|.|.+++.+|+|.|+|.+.+.+
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~  102 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPP  102 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCC
Confidence            46899999999999999999999754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.79  E-value=5.9e-08  Score=66.22  Aligned_cols=67  Identities=21%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             EeccCCC-CcEEEEEeCCEEEEecccccCCCCCEEEE-----------cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103          4 LSGLPDK-NYVLAWKRGIAILTAGSTKVTPDKRIQLV-----------DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH   71 (78)
Q Consensus         4 ~~~~~~~-~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----------~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~   71 (78)
                      ++|.|.. +..|.|+|++..|...+.  ..++|+.+.           ....|+|.+|+.+|+|.|+|.|.|.......+
T Consensus       244 a~g~P~~~~~~v~W~kng~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~~  321 (326)
T PHA02785        244 VSLRPPTTDADVFWISNGMYYEEDDE--DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKTV  321 (326)
T ss_pred             EECCCCCCCceEEEEECCEECCCcCC--CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEee
Confidence            4566643 368999999887753211  112344332           13689999999999999999999976444444


Q ss_pred             E
Q psy14103         72 T   72 (78)
Q Consensus        72 ~   72 (78)
                      +
T Consensus       322 ~  322 (326)
T PHA02785        322 T  322 (326)
T ss_pred             e
Confidence            3

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.78  E-value=4.5e-08  Score=57.58  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=23.4

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++.+|+|.+++.+|+|.|+|.+.+.+
T Consensus        78 ~~~sL~I~~v~~~D~G~Y~C~v~~~~  103 (116)
T cd05715          78 KDASIVIHNLQFTDNGTYTCDVKNPP  103 (116)
T ss_pred             CeeEEEEeeCCcccCEEEEEEEEeCC
Confidence            35899999999999999999999764

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.78  E-value=7.4e-08  Score=54.61  Aligned_cols=56  Identities=13%  Similarity=0.139  Sum_probs=41.8

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE   74 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~   74 (78)
                      ...+.|++++..+.       .+.|+..... .|.|.+++.+|+|.|.|.+...+.....+.+.
T Consensus        24 ~A~v~W~~ng~~l~-------~~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~   79 (85)
T cd05872          24 LASPVWLFNGTPLN-------AQFSYRVGTD-GLLILVTSPEHSGTYRCYSEEEGFQQLVASYS   79 (85)
T ss_pred             CccEEEEECCcccC-------CCcceEEeCC-CCEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence            34899999887763       4578866554 57799999999999999999766554444433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.74  E-value=6.8e-08  Score=63.28  Aligned_cols=67  Identities=21%  Similarity=0.296  Sum_probs=44.3

Q ss_pred             CCCcEEEEEeCCEEEEecc--cc--c--CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103          9 DKNYVLAWKRGIAILTAGS--TK--V--TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus         9 ~~~~~v~W~k~~~~l~~~~--~~--~--~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ..++.|.|+|++.+.....  ..  .  ....|+ ...+++|.|.+++.+|+|.|+|++.+.. ..+..+.|.|.
T Consensus        60 ~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~  133 (227)
T PHA02826         60 ITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFD  133 (227)
T ss_pred             CCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEe
Confidence            3567999999764432211  10  0  011122 1236799999999999999999999863 66777777764

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.74  E-value=9.6e-08  Score=48.59  Aligned_cols=46  Identities=20%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|+...+.        ........+..|.|.+++.+|+|.|+|.+.+.
T Consensus        16 ~~~v~W~~~~~~~~--------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   61 (63)
T smart00408       16 VPNITWLKDGKPLP--------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENS   61 (63)
T ss_pred             CCeEEEEECCEECC--------CCCEEecCCcEEEEeeCCcccCEEEEEEEecC
Confidence            45799999776553        11222336679999999999999999999863

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.73  E-value=6.5e-09  Score=54.66  Aligned_cols=47  Identities=19%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cC----eEEEEccCCCCCCEEEEEEe
Q psy14103          8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DG----YNLQITDLQTTDAGSYQCQI   61 (78)
Q Consensus         8 ~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~----~sL~I~~v~~~D~G~Y~C~~   61 (78)
                      ......++|+|++..+...       ...... ..    ..|.|.+++.+|+|.|+|+|
T Consensus        13 ~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   13 GPPPTTVTWSKNGQSLPEG-------STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             SSSTSEEEEEETTTTTSEE-------EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCCCcEEEEEECCccccCc-------ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            3455789999965332111       011111 11    14999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.72  E-value=1.5e-07  Score=54.60  Aligned_cols=62  Identities=21%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             cCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCCCCC-CEEEEEEeecc-CCceEEEEEE
Q psy14103          7 LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQTTD-AGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         7 ~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      .|.+ ..|.|..+...|..+     .++||.+.       ....|.|.++..+| .|.|.|.+.|. +..+..++|+
T Consensus        28 ~P~P-~~i~W~w~~~~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L~   98 (98)
T cd05898          28 TPPP-DRIAWAWKENVLESG-----TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE   98 (98)
T ss_pred             CCCC-cEEEEEEccccccCC-----CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEeC
Confidence            4443 357888766666432     35799886       23689999999877 89999999987 6777777763

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>KOG4194|consensus

Probab=98.72  E-value=2e-08  Score=73.74  Aligned_cols=68  Identities=22%  Similarity=0.465  Sum_probs=53.7

Q ss_pred             eEeccCCCCcEEEEEeCCEE-EEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          3 YLSGLPDKNYVLAWKRGIAI-LTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +++|.|.+  .|.|.|++.. .++     ....|..+. ++-.+.|.||.++|+|.|+|.+.+. +..+..++|.|.-
T Consensus       635 aAtG~P~P--eIawqkdggtdFPA-----A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e  705 (873)
T KOG4194|consen  635 AATGHPRP--EIAWQKDGGTDFPA-----ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE  705 (873)
T ss_pred             eccCCCCc--ceeehhcCCCCCch-----hhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec
Confidence            56788776  7899996532 332     345677766 6678999999999999999999976 6889999999863

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.72  E-value=7.8e-08  Score=54.81  Aligned_cols=67  Identities=22%  Similarity=0.414  Sum_probs=43.6

Q ss_pred             CCCcEEEEEeC-----CEEEE--ecc-----cccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC--CceE
Q psy14103          9 DKNYVLAWKRG-----IAILT--AGS-----TKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEI   69 (78)
Q Consensus         9 ~~~~~v~W~k~-----~~~l~--~~~-----~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~   69 (78)
                      .....+.|.+.     ...+.  ...     ......+|+.+.     .+++|.|.+++.+|+|.|.|++....  ....
T Consensus        29 ~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~  108 (114)
T PF07686_consen   29 SNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGN  108 (114)
T ss_dssp             SSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEE
T ss_pred             CCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECC
Confidence            45578999982     12222  111     112345677765     35789999999999999999999763  4445


Q ss_pred             EEEEEE
Q psy14103         70 THTLEI   75 (78)
Q Consensus        70 ~~~L~V   75 (78)
                      ...|.|
T Consensus       109 ~~~L~V  114 (114)
T PF07686_consen  109 GTKLTV  114 (114)
T ss_dssp             EEEEEE
T ss_pred             cEEEEC
Confidence            555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.69  E-value=1.8e-07  Score=53.30  Aligned_cols=55  Identities=20%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CCcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.     .. ++...... ....+||++.   ...+|+|++++.+|+|.|.|.+.+.
T Consensus        21 ~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          21 SGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            3467999871     12 23322111 1235799876   4578999999999999999998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.68  E-value=1.5e-07  Score=54.73  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=37.7

Q ss_pred             CCcEEEEEeC-----CEEE-Eecccc-----cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGSTK-----VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~~-----~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|.     .+.| ......     ....+||.+.    ...+|.|.+++++|+|.|+|.+...
T Consensus        25 ~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          25 GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence            3468999983     1233 222111     1235799875    3578999999999999999998864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.67  E-value=1.1e-07  Score=54.29  Aligned_cols=57  Identities=21%  Similarity=0.386  Sum_probs=39.4

Q ss_pred             CCcEEEEEeCC-----E-EEEeccc----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103         10 KNYVLAWKRGI-----A-ILTAGST----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus        10 ~~~~v~W~k~~-----~-~l~~~~~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      ....+.|+|..     . ++.....    .....+|+++.     .+.+|+|.+++.+|+|.|.|.+.+.+.
T Consensus        20 ~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          20 SSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            45689999821     2 2222211    12345788775     457999999999999999999997543

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.66  E-value=6.2e-08  Score=54.16  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      ...+.|+|++..+..            ......|.|.+++.+|+|.|+|.+.+..  ..+...+|+|
T Consensus        29 ~~~~~w~k~g~~~~~------------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          29 VYKVTYYRDGKAKKY------------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             ceEEEEEECCeEccc------------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            457899998765421            1134689999999999999999999753  4455555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.66  E-value=3.4e-07  Score=51.38  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V   75 (78)
                      +...|.|+|++..|.........+.+|+.  ..+|++..+..+|.+.|+|++.+..    ..+....|+|
T Consensus        13 P~a~i~W~k~~~~l~~~~~~~~~~~~~t~--~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V   80 (80)
T cd05885          13 PAATLRWYRDRKELKGVISQQENGKTVSV--SNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV   80 (80)
T ss_pred             CCCeEEEEECCEECCCCcccccCCceEEE--EEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence            44689999999888532111123444553  3589999999999999999999863    3455555554

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.65  E-value=1.8e-07  Score=50.63  Aligned_cols=30  Identities=27%  Similarity=0.656  Sum_probs=25.5

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEe
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQI   61 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~   61 (78)
                      ..+||.+.     ..++|+|.+++.+|+|.|.|.+
T Consensus        47 ~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       47 YKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             cCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            45799875     3489999999999999999974

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.62  E-value=2.4e-07  Score=54.17  Aligned_cols=56  Identities=20%  Similarity=0.327  Sum_probs=38.3

Q ss_pred             CCCcEEEEEeC-----C-EEEEecccc------cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          9 DKNYVLAWKRG-----I-AILTAGSTK------VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         9 ~~~~~v~W~k~-----~-~~l~~~~~~------~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+...+.|+|.     . .++......      ....+||.+.     ..++|+|.+++.+|+|.|.|.+...
T Consensus        27 ~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          27 FSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             ccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence            34578999982     1 223222111      1135799875     3579999999999999999998753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.62  E-value=4.4e-07  Score=50.11  Aligned_cols=63  Identities=19%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             cEEEEEeCCEEEEecccc--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      ..|+|+|++..+..+...  ..+++.+ ......|.|.....+|.|.|+|++.+..   +.+...+|+|
T Consensus        15 ~~v~W~~~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v   82 (82)
T cd05759          15 AEIIWFRDGEVLDGATYSKELLKDGKR-ETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV   82 (82)
T ss_pred             CEEEEEECCEEccCceeeeeEecCCCe-EEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence            489999998877543211  1122222 1122478898888899999999999752   5566666654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.62  E-value=2.3e-07  Score=53.58  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             CcEEEEEeC-----CEEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG-----IAIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|.     ...| ..... .....+||++.   ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          30 SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            467999972     2333 22211 11235799875   4478999999999999999998753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.61  E-value=2.4e-07  Score=63.22  Aligned_cols=59  Identities=25%  Similarity=0.376  Sum_probs=43.5

Q ss_pred             CCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc----eEEEEEEEE
Q psy14103          9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK----EITHTLEIL   76 (78)
Q Consensus         9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~----~~~~~L~V~   76 (78)
                      ...+.|.|.|+.. +        .+.|+....++.|.|.+|+.+|+|.|+|.+.+.. ..    +..+.|.|.
T Consensus       153 ~~~~~i~W~k~~~-~--------~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~  216 (326)
T PHA02785        153 NVNADIIWSGHRR-L--------RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR  216 (326)
T ss_pred             CCCceEEEccCCc-c--------CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence            3457899988643 2        3578877777899999999999999999999753 32    334456553

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.59  E-value=6.9e-07  Score=57.17  Aligned_cols=68  Identities=19%  Similarity=0.439  Sum_probs=47.5

Q ss_pred             CCcEEEEEeC-CEEEEeccc--ccCC--CCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc--C-CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRG-IAILTAGST--KVTP--DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL--E-PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~-~~~l~~~~~--~~~~--~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~--~-~~~~~~~L~V~g   77 (78)
                      ....|.|+|. ..+...+..  .+.+  .+|+.+.    .+.+|+|.+|..+|+|.|+|.+..-  + .++.++.|+|.+
T Consensus        44 ~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         44 NSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             ccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence            4578999984 323222211  1211  2488742    5689999999999999999999965  4 667888888865

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.58  E-value=3.4e-07  Score=53.63  Aligned_cols=55  Identities=27%  Similarity=0.452  Sum_probs=38.2

Q ss_pred             CCcEEEEEeC---C--EEEE-eccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG---I--AILT-AGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~---~--~~l~-~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.   .  ..+. .... ....++||++.     .+++|+|.+++.+|+|.|.|.+...
T Consensus        28 ~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          28 TNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             CceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            3468999982   1  2222 2111 11345899875     3589999999999999999999854

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4222|consensus

Probab=98.57  E-value=1e-07  Score=73.25  Aligned_cols=61  Identities=23%  Similarity=0.407  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V~   76 (78)
                      ++.|+|.|++..+...     ..+|+.+...+.|.|.+|..+|+|.|.|.+.|. + -.+..++|.|.
T Consensus       161 eptvSw~Kdg~pl~~~-----~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~  223 (1281)
T KOG4222|consen  161 EPTVSWVKDGKPLDHY-----DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ  223 (1281)
T ss_pred             CCcceeecCCCccccc-----cceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence            4589999998887642     346777788999999999999999999999987 3 56788888875

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.46  E-value=1.2e-06  Score=51.80  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ++.+|.|++++.+|+|.|.|.+...
T Consensus        66 ~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          66 RGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            3699884     3578999999999999999998754

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.46  E-value=2.1e-06  Score=46.03  Aligned_cols=50  Identities=14%  Similarity=0.358  Sum_probs=36.8

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      ..+.|.++...+..+.              ..|.|.+++.+|+|.|+|.+.+..  ..+..+.|+|
T Consensus        29 ~~~~w~~~~~~~~~~~--------------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   29 PQVQWYKNGSPINSSQ--------------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEEEEETTEEEEEES--------------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeeeeeeeeee--------------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            6799999887775321              117788999999999999999854  4455666554

...

>KOG4221|consensus

Probab=98.45  E-value=7e-07  Score=69.16  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=51.3

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|+.+.+.       .++|+.+..++.|.|.+++.+|.|.|.|.+.+..  ..+..+.|+|++
T Consensus       168 ~~p~i~w~kn~~pl~-------~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s  230 (1381)
T KOG4221|consen  168 PVPTIMWLKNDQPLP-------LDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLS  230 (1381)
T ss_pred             cCceeEEeccccccc-------CCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecC
Confidence            345799999988664       4679999999999999999999999999999874  447888888863

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.44  E-value=4e-07  Score=54.94  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+|+|.+|+.+|+|.|+|++.+. +..+..++|+|..
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~   37 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE   37 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec
Confidence            37999999999999999999876 4677888888764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.43  E-value=2.1e-06  Score=47.94  Aligned_cols=57  Identities=18%  Similarity=0.300  Sum_probs=37.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L   73 (78)
                      +.|.|.+ ..|.|.|++..+..         ++.. ....|.|.++  .|+|.|.|.+.|..  ..+..++|
T Consensus        22 a~G~P~P-~~I~W~k~g~~l~~---------~~~~-~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          22 AVGPPEP-VEILWWQGGSPLGD---------PPAP-SPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             eeeecCC-eEEEEEECCEECCC---------CCCC-CCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            3455543 15899999887632         2222 3358999887  58899999999873  33445554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.36  E-value=3.4e-06  Score=48.84  Aligned_cols=31  Identities=23%  Similarity=0.564  Sum_probs=26.7

Q ss_pred             CCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||.+.   ..++|+|.+++.+|+|.|.|.+..
T Consensus        57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            5789864   557899999999999999999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03376 BARF1; Provisional

Probab=98.34  E-value=6.1e-06  Score=53.35  Aligned_cols=56  Identities=13%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCcEEEEEe----CC-EEEEeccc-----ccCCCCCEEE---EcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         10 KNYVLAWKR----GI-AILTAGST-----KVTPDKRIQL---VDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        10 ~~~~v~W~k----~~-~~l~~~~~-----~~~~~~R~~~---~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ....|.|+|    +. ..+.....     .+.-.+|+.+   .++.+|.|.+++++|.|.|+|.+....
T Consensus        42 ~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge  110 (221)
T PHA03376         42 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGE  110 (221)
T ss_pred             CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCC
Confidence            467999999    33 33433322     1234567777   378899999999999999999999653

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.25  E-value=3.1e-06  Score=49.09  Aligned_cols=31  Identities=23%  Similarity=0.557  Sum_probs=26.0

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++||++.     ...+|+|.+++.+|+|.|.|....
T Consensus        58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence            5789763     247899999999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.23  E-value=9.4e-06  Score=47.98  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=25.9

Q ss_pred             CCCEEEE--c---CeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV--D---GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~--~---~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||++.  .   ..+|+|.+++.+|+|.|.|.+..
T Consensus        62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          62 KGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            4799875  1   25899999999999999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.22  E-value=8.2e-06  Score=45.72  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|+.+....|+|+|++..+..+..    ....++.|++.  ..|.|...+..|.|.|+|++.+..
T Consensus        22 a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          22 ATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVS--SQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             EeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEE--EEEEECHHHhCCCCCEEEEEEeCC
Confidence            5666666689999998887754432    12345555553  367777777789999999999764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.20  E-value=1.6e-05  Score=46.49  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      -+||... .+.|.++...+....     +..+....      ...|++..+..+|+|.|+|.+.|. ...+++..|.|.
T Consensus        28 eAYP~p~-~~~W~~~~~~l~~~~-----~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          28 EAYPKPE-HQQWIYMNRTLTNTS-----DHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EeCCCCe-eeEEEcCCcccCccc-----cceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            3466642 279999765543211     11121111      257999999999999999999986 477888888774

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PHA02633 hypothetical protein; Provisional

Probab=98.15  E-value=8e-06  Score=43.78  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      +...|.|-++..+|+|.|.|.+.+.. ..+.+..|+|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            56789999999999999999999874 77788888774

>cd00096 Ig Immunoglobulin domain

Probab=98.14  E-value=1e-05  Score=40.71  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=36.9

Q ss_pred             CCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .....+.|+++........................|.|.+++.+|+|.|.|.+.+..
T Consensus        10 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          10 PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            345789999966544321100001112223367899999999999999999998753

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.08  E-value=3.7e-06  Score=44.41  Aligned_cols=25  Identities=24%  Similarity=0.578  Sum_probs=22.4

Q ss_pred             EcCeEEEEccCCCCCCEEEEEEeec
Q psy14103         39 VDGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        39 ~~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.+|.|.+|..+|.|.|+|.+.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3567999999999999999999875

...

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.02  E-value=1.8e-05  Score=44.71  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+..|.|.+|+.+|+|.|+|...+.
T Consensus        51 ~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          51 NKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             eeEEEEccCCChhHCEEEEEEEECC
Confidence            4578999999999999999999864

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.92  E-value=0.00032  Score=39.50  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             CCcEEEEEeCCEEEEeccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      +...|.|+|++..+..... .....++|...  .+|.+..-...|...|+|++.+..  ..+....|+|+-
T Consensus        13 P~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~--S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883          13 PAATIRWFKGNKELTGKSTVEETWSRMFTVT--SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             CCCEEEEEECCEECcCcccceeccCCCcEEE--EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            4468999999887753221 11233455544  478888888888899999999753  567788888864

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.87  E-value=2.5e-05  Score=52.32  Aligned_cols=47  Identities=17%  Similarity=0.365  Sum_probs=39.4

Q ss_pred             CcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++...|.- ++..|.       .++++++.+.+.|.+.+.+.+++|.|+|.+.-+
T Consensus        12 DP~y~W~GP~g~~l~-------gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLS-------GNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccC-------CCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            56788987 556663       567899999999999999999999999998854

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.78  E-value=0.00021  Score=39.85  Aligned_cols=65  Identities=17%  Similarity=0.398  Sum_probs=39.7

Q ss_pred             cCCCCcEEEEEeCCEEEEeccccc--CCC-CCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEE
Q psy14103          7 LPDKNYVLAWKRGIAILTAGSTKV--TPD-KRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEI   75 (78)
Q Consensus         7 ~~~~~~~v~W~k~~~~l~~~~~~~--~~~-~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V   75 (78)
                      +|.  ..|+|+|++..|.......  ..+ ..|++.  .+|.|......|...|+|++.+..    ..+....|+|
T Consensus        12 ~P~--~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~--s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~   83 (83)
T cd07705          12 KPA--ANIKWRKGDQELEGAPTSVLEDGNGKTFTVS--SSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV   83 (83)
T ss_pred             cCC--CEeEEEECCEECCCcceeEEECCCCCEEEEE--EEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence            454  4899999987775332111  122 244333  367776667778899999999753    3344444443

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.76  E-value=0.00015  Score=43.30  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             EeccCCCC-cEEEEEeC--CE--EEE----ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKN-YVLAWKRG--IA--ILT----AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~-~~v~W~k~--~~--~l~----~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .||....+ +.++|.|+  +.  .+.    .++......+||...     +.-+|+|.+++.+|++.|.|.....
T Consensus        22 ~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~m   96 (115)
T cd05721          22 YTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIELM   96 (115)
T ss_pred             ecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEeeec
Confidence            36666665 89999982  21  121    122221356788765     4578999999999999999987754

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.76  E-value=9.3e-05  Score=43.61  Aligned_cols=44  Identities=20%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         33 DKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.||.+. ++.+|.|+.+|+.|+|.|.-++.+.......+...|.
T Consensus        61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs  105 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS  105 (108)
T ss_dssp             HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence            5688876 8899999999999999999999976544455555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG4222|consensus

Probab=97.71  E-value=9.5e-05  Score=57.53  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             CCCcEEEEEeC-CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          9 DKNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         9 ~~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +..+.++|+|. .+.+-+.......+.|.++...++|+|.+|+.+|.|.|.|+..+. ......+.|.+
T Consensus       342 nP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q  410 (1281)
T KOG4222|consen  342 NPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ  410 (1281)
T ss_pred             CCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEE
Confidence            44568999994 344444433446789999998889999999999999999997654 33333444433

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.68  E-value=0.0009  Score=36.36  Aligned_cols=59  Identities=20%  Similarity=0.338  Sum_probs=40.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.-+.+..|.|+|++..+..+...    ...++.|++.  ..|.|......+...|+|.+...
T Consensus         8 a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        8 VSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             EEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCCCEEEEEEEEc
Confidence            45666667899999988764433211    1245666654  36777776778889999999864

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.68  E-value=0.00057  Score=37.78  Aligned_cols=51  Identities=16%  Similarity=0.235  Sum_probs=32.5

Q ss_pred             cEEEEEeCCEEEEecccc--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..|+|+|++..+......  ...++.|++.  ..|.+......|.+.|+|.+.+.
T Consensus        15 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--s~l~~~~~~~d~g~~~~C~v~h~   67 (82)
T cd05761          15 ATIRWFKGDKELKGVKLKEEDENGKTFTVT--SSLRFQVDREDDGAPIICRVDHP   67 (82)
T ss_pred             CeEEEEECCEEccCceeeEecCCCCEEEEE--EEEEEEcchhhCCCEEEEEEeCh
Confidence            499999988777522111  1123445443  25666666666778999999976

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.64  E-value=0.00061  Score=38.06  Aligned_cols=51  Identities=10%  Similarity=0.099  Sum_probs=35.4

Q ss_pred             cEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..|+|+|++..+......   ...++.|++.  .+|.+..-...|...|+|++.+.
T Consensus        15 ~~itW~kng~~l~~~~~~~~~~~~~~t~~~~--s~L~~~~~~~d~g~~ytC~v~h~   68 (83)
T cd05884          15 ADIRWFKNDKEIKDVKYLKEEDANRKTFTVS--STLDFRVDRSDDGVAIICRVDHE   68 (83)
T ss_pred             CEEEEEECCEECcCceeeEeeCCCCCEEEEE--EEEEEEcccccCCCEEEEEEech
Confidence            899999998887543211   1244455544  36777766677889999999975

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.53  E-value=0.00075  Score=38.54  Aligned_cols=39  Identities=23%  Similarity=0.560  Sum_probs=33.2

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +..+|.+..++..|+|..+|.+.-. ...+....+.|+||
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl~f   88 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVLAF   88 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEEeC
Confidence            5679999999999999999999754 35578888888886

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.53  E-value=0.00064  Score=38.61  Aligned_cols=21  Identities=19%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             eEEEEccCCCCCCEEEEEEee
Q psy14103         42 YNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      ..+.|.+++.+|+|.|.|...
T Consensus        55 a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          55 ASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEecCCCcccCEEEEEEEE
Confidence            489999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.51  E-value=0.0016  Score=37.32  Aligned_cols=56  Identities=14%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+.|.-+.+..|+|+||+..+. +...    ...|..|++..  .|.+.   .++...|+|++...
T Consensus        23 ~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s--~l~~~---~~~~~~ysC~V~H~   82 (93)
T cd05770          23 YVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLK--STEFT---PTKGDEYACRVRHN   82 (93)
T ss_pred             EEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEE--EEEEC---CCCCCeEEEEEEEC
Confidence            3567677789999999998876 4321    23566665542  44444   56888899999964

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.50  E-value=0.00083  Score=38.45  Aligned_cols=60  Identities=13%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-+.+..|.|+|++..+..+..    ....++.|++.  ..|.|..-.-.+...|+|.|...+
T Consensus        23 a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          23 ISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             EEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCCCeEEEEEEECC
Confidence            5676677899999998877643311    12345566654  356666555557789999999753

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.39  E-value=0.00088  Score=38.57  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=40.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-+.+..|.|+|++..+..+..    ....++.|++.  ..|.+..-.-.+...|+|.+...+
T Consensus        26 ~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          26 INDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             EEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCCCeEEEEEEecC
Confidence            5666667799999998877753321    11236677664  356665555556789999999653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.39  E-value=0.0022  Score=36.70  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|.|+|++..+..+..    ....|+.|++.  -.|.+..   ++...|+|++...+
T Consensus        23 ~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          23 FVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             EEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEEEC---CCCCeEEEEEEeCC
Confidence            35676667799999999887754321    23456777765  2455543   46679999999653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>KOG4194|consensus

Probab=97.38  E-value=0.00049  Score=51.32  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++..+.++.+.|+|+.++|..       .+|-.+. ++--|.+.++-.+|+|.|+|.+.+. +..-...++.|.
T Consensus       730 a~~~~a~pr~~W~k~d~pil~-------t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  730 AEGAPADPRLEWFKEDKPILI-------TERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             cCCCCCCccccccCCCCceEE-------eecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            344455688999997766543       2333333 5678889999999999999999975 444455555443

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.30  E-value=0.0042  Score=36.59  Aligned_cols=59  Identities=14%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccccc--CCC-CCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKV--TPD-KRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~--~~~-~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   65 (78)
                      ++|.-+.+..|+|+||+..+..+....  ..+ ..|++..  .|.+.. ...|.| .|+|++...+
T Consensus        30 a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S--~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          30 AHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTS--TVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             EeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEE--EEEEEC-ccccccCceEEEEEeCC
Confidence            456666678999999988875432221  123 2565532  455553 455555 4999999753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.29  E-value=0.0031  Score=35.59  Aligned_cols=58  Identities=17%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|..+.+..|+|+|++..+..+...    ...+.-|++.  ..|.|   ..+|.+.|+|++....
T Consensus        22 ~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~--s~l~v---~~~~~~~ytC~V~H~~   83 (93)
T cd07698          22 HATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW--VTLEV---PPEDKARYSCRVEHSG   83 (93)
T ss_pred             EEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE--EEEEE---CCCCCCEEEEEEEeCC
Confidence            367776777899999987533222110    0122233322  13333   3458999999998653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.21  E-value=0.00049  Score=41.88  Aligned_cols=65  Identities=17%  Similarity=0.279  Sum_probs=37.7

Q ss_pred             CCcEEEEEeCCEEE-Eeccc-c-c--CCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAIL-TAGST-K-V--TPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~l-~~~~~-~-~--~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      .+..|.|+.++..+ .++.. . .  ..-++..+.    ++.+|.+...+.- .|+|+|.+.... ..+..+.|.+
T Consensus        45 ~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   45 SEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             GGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            46789999865444 32221 1 1  112333333    6788999998777 999999998643 5555555554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.08  E-value=0.0066  Score=36.40  Aligned_cols=58  Identities=16%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             eccCCCCcEEEEEeCCEEE------Eec----ccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRGIAIL------TAG----STKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l------~~~----~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +|..+....|.|+|++...      ..+    ......++.|++.  ..|.|..-...+.+.|+|.+...
T Consensus        63 ~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~--s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          63 AGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLS--SHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             CCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEE--EEEEecCCccCCCCEEEEEEEcC
Confidence            4443444789999975321      111    1112345666554  36777766666778999999864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.07  E-value=0.0077  Score=34.66  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-++...|+|+|++..+..+...   ...++.|++.  ..|.|..-+  ....|+|+|...+
T Consensus        25 a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          25 LENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             EEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEECchh--CCCeEEEEEEECC
Confidence            56666678999999998876554221   1223356554  355555433  2344999999643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.06  E-value=0.014  Score=33.16  Aligned_cols=58  Identities=17%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|.|+|++..+..+..    ....|..|++..  .|.+.   .++...|+|++...+
T Consensus        22 ~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s--~L~~~---~~~~~~ysC~V~H~~   83 (94)
T cd05766          22 HVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILV--MLETT---PSRGDTYTCVVEHSS   83 (94)
T ss_pred             EEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEE--EEEEc---CCCCCEEEEEEEeCC
Confidence            46777778899999999887654311    112444565542  34433   356779999999753

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.06  E-value=0.0022  Score=35.29  Aligned_cols=58  Identities=19%  Similarity=0.384  Sum_probs=39.6

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc---c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK---V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|.|++++..+..+...   . ..++.|++..  .|.+.   ..+...|+|.|....
T Consensus        16 ~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen   16 LVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS--SLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             EEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE--EEEEE---TTTTGGEEEEEEETT
T ss_pred             EEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE--EEEec---CCCCCEEEEEEEECC
Confidence            467777888999999988776443221   1 2567776654  45555   556668999999653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.97  E-value=0.0079  Score=35.72  Aligned_cols=60  Identities=13%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---c-C-CCCCEEEEcCeEEEEccCCCCC-CEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---V-T-PDKRIQLVDGYNLQITDLQTTD-AGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~-~~~R~~~~~~~sL~I~~v~~~D-~G~Y~C~~~~~~   65 (78)
                      ++|.-+.+..|+|+|++..+..+...   . . .++-|++.  ..|.|....-.| ...|+|++...+
T Consensus        27 a~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          27 ATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             EEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCCCeEEEEEEEeC
Confidence            45666677999999998877654321   1 1 12455554  356666554434 689999999654

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.92  E-value=0.0059  Score=34.98  Aligned_cols=65  Identities=15%  Similarity=0.405  Sum_probs=39.4

Q ss_pred             eccCCCCcEEEEEeC--CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRG--IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      .|.|..  .|+|+++  +.....  .....++.|.+..  .|.+......|.-.|+|++.+..   ......+|.|
T Consensus        26 ~gkP~a--~ItW~~~~~~~~~~~--~~~~~~g~~tv~S--~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~V   95 (95)
T cd05719          26 NGKPPA--TISWETTLGGEAETQ--SKENPNGTVTVTS--EYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLNV   95 (95)
T ss_pred             CCcCCC--EEEEEeCCCCcceeE--eecCCCCCEEEEE--EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEeeC
Confidence            344554  8899996  111110  1112445566553  67777777788889999999753   4556666554

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.83  E-value=0.0083  Score=34.89  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=34.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .|.|.....|.|+|+...+............+.  ...+|++.--...|...|+|++...
T Consensus        27 g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~--~~stlt~~~~r~D~g~~~sC~A~l~   84 (100)
T cd05755          27 GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVN--APATITITVDREDHGANFSCETELD   84 (100)
T ss_pred             CcCCCCcEEEEEeeCCEEcccceeccccCCCce--eEEEEEEecchhhCCcEEEEEEEec
Confidence            345666677999998888753221111111121  2346777655455555999999965

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.79  E-value=0.016  Score=33.16  Aligned_cols=60  Identities=13%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             eEecc-CCCCcEEEEEeCC-EEEEeccc--ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          3 YLSGL-PDKNYVLAWKRGI-AILTAGST--KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         3 ~~~~~-~~~~~~v~W~k~~-~~l~~~~~--~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .++|. -+.+..|+|+|++ ..+.....  ....|+.|++..  .|.+..-+-.+.-.|+|.|...
T Consensus        22 ~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~~~~w~~g~~ysC~V~H~   85 (96)
T cd07696          22 LVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS--TLNVSTDDWISGDTFQCKVTHP   85 (96)
T ss_pred             EEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE--EEEeCHHHccCCCcEEEEEECC
Confidence            46788 6778999999975 33332211  123455565542  5555544334556899999965

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.74  E-value=0.0082  Score=34.48  Aligned_cols=61  Identities=11%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             cEEEEEeCCE-EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103         12 YVLAWKRGIA-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      ..|+|+++.. .... ......+++|++..  .|.+..-...|...|+|++.+..   +......|.|
T Consensus        31 a~IsW~~~~~g~~~~-~~~~~~~gt~tv~S--~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~v   95 (95)
T cd07703          31 ARISWSSTLGGNANT-TSKENGDGTVTVTS--EYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLSV   95 (95)
T ss_pred             cEEEEEcCCCCCeeE-EEEeCCCCCEEEEE--EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEeC
Confidence            4899998621 1110 11123456676654  67777777788889999999753   4455555543

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.61  E-value=0.0099  Score=34.00  Aligned_cols=59  Identities=15%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.-++...|+|+|++.. ..+...   . ..++.|++..  .|++...+-.....|+|++...+
T Consensus        25 a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s--~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          25 ATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS--QLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             EeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE--EEEEeHHHcCCCCcEEEEEEeCC
Confidence            5676677899999999886 433211   1 2367776643  56555443233667999999754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.57  E-value=0.0098  Score=34.38  Aligned_cols=61  Identities=11%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc---ccCC----CCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTP----DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~----~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|+|++..+..+..   ....    ++-|++.  ..|.|..-.-.+...|+|+|....
T Consensus        24 ~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          24 LVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             EEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCCCcEEEEeEeCC
Confidence            36776677899999999877643211   1111    3556554  256664333346678999999653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.31  E-value=0.015  Score=33.71  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             EeccC-CCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeeccC
Q psy14103          4 LSGLP-DKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~-~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   65 (78)
                      ++|+- +++..|.|.+++..  .+..   ....|+-|++..  .|.|. .+.-..| .|+|+|...+
T Consensus        28 V~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S--~L~v~-~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          28 LSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSS--VLPGC-AEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             EeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEE--EEEeC-HHHhcCCCeEEEEEECCC
Confidence            67766 77899999997643  1111   112456666653  55554 2233334 4999999754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.09  E-value=0.054  Score=29.25  Aligned_cols=35  Identities=20%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             EEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeec
Q psy14103         14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        14 v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +.|.|+...+.-      .+..+ +..+++        ++.|.|+|.+.+
T Consensus        21 i~W~~n~~~~~g------~~~~~-~~~~~~--------e~~G~Y~C~~~~   55 (65)
T cd07692          21 IKWKKNDQVSQG------SDEKY-LSLNHF--------SSSGYYHCTADN   55 (65)
T ss_pred             ceEEeCCccCCC------CCceE-EeeccC--------CCCceEEEEeCC
Confidence            899998754421      11222 233333        899999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG1480|consensus

Probab=95.93  E-value=0.0026  Score=48.27  Aligned_cols=59  Identities=20%  Similarity=0.444  Sum_probs=42.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g   77 (78)
                      ..+.|+|+..++.       ++..+....+..|.|..+..+|.|+|+|++.+-.    ...+.+.+-|.|
T Consensus       160 ae~~w~k~e~~~~-------pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g  222 (909)
T KOG1480|consen  160 AEVEWLKNEVVID-------PDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG  222 (909)
T ss_pred             hhhhccccCCCCC-------ccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence            4678888776653       3555656678899999999999999999999752    333444444433

>PHA02982 hypothetical protein; Provisional

Probab=95.47  E-value=0.093  Score=34.73  Aligned_cols=36  Identities=17%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEI   75 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V   75 (78)
                      +..+|+|.++..+..|.|+|++..+. .. +-...|.|
T Consensus        98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V  135 (251)
T PHA02982         98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEI  135 (251)
T ss_pred             cceeEEeccCCcccCCceEEEEecCCCchheeheeeeE
Confidence            66899999999999999999999864 33 33455554

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.33  E-value=0.047  Score=29.84  Aligned_cols=38  Identities=24%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..|.|+|+..+...              .+.+|.+-.+...=.|.|.|++.+
T Consensus        17 tsi~W~kG~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          17 TNITWKKGKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CcEEEecCcccccc--------------cccEEeccCcccCCCcceEecCcc
Confidence            46899995554321              156788888888889999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.93  E-value=0.15  Score=29.54  Aligned_cols=67  Identities=13%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      .|-|.  ..|+|.++..-...-......++.|++..  +|.+..-...|.-.++|++....   .......|+|
T Consensus        28 ~gkPa--a~IsW~~~~~G~~~~~~~~~~ngT~TV~S--~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~~~L~V   97 (97)
T cd07704          28 EGRPA--ADVTWETNVYGTSESHSQEHPNGTTTVTS--EYIWVPSRHANGHPLTCVVSHPALQQDFRITHILNV   97 (97)
T ss_pred             CCccC--CEeEEeCCCCCccceeeecCCCCCEEEEE--EEEEEeCHHHCCcEEEEEEeCcccCCCceeeEEeeC
Confidence            34444  48899974211110011123566777765  67777777789999999999652   5556666654

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03042 CD47-like protein; Provisional

Probab=94.80  E-value=0.31  Score=33.21  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=31.7

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      .+..|.|+.++..+...+.+    .+      .+|.+... ..=.|+|||++.+.- ..+....|
T Consensus        49 ~~~~V~Wkf~~~~If~~n~t----n~------aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeL  102 (286)
T PHA03042         49 SNIHINWKFNNKVIFKKNNT----NT------SSLKFNFS-KNLSGNYTCEAINKFNKIKNTIEL  102 (286)
T ss_pred             cceEEEEEeCCeeEEEecCC----cc------eEEEEecc-ccCCCceeEEEeecccCccEEEEE
Confidence            56789999877665432211    11      45666554 334899999999642 33334444

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.74  E-value=0.34  Score=26.48  Aligned_cols=58  Identities=10%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             EeccCCCCcEEEEEeCCEEE---EecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAIL---TAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l---~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ..|.|.  ..|+|+.++..+   .........++.|.+..  .|.+..-...+...++|++.+..
T Consensus        24 ~~~~P~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S--~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   24 SGGYPP--PQITWYLDGGPVVASNTTQSSSPDNGLFTVSS--TLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             EEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEEE--EEEEETTGGGTTEEEEEEEEETT
T ss_pred             CCeECC--eEEEEEECCCceeeeeeeeeeccCCCcceEEE--EEEEEcChHHCCeEEEEEEECCc
Confidence            345554  589999976554   11111224555665543  56665555667888899999864

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA03282 envelope glycoprotein E; Provisional

Probab=94.44  E-value=0.13  Score=37.47  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103         32 PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus        32 ~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      .++|.++. |.+|.|.+++.+|+|.|+-.+...+   .+...+.|.|
T Consensus       115 ~~~rvs~~-n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V  160 (540)
T PHA03282        115 WPPRVAVV-NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV  160 (540)
T ss_pred             cCcceeEe-cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence            46788775 6789999999999999999975432   3344455554

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.04  E-value=0.16  Score=36.58  Aligned_cols=36  Identities=11%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      .++++.+.|+..+|+|.|.|........+-.+.++|
T Consensus        79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~v  114 (500)
T PHA02914         79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILV  114 (500)
T ss_pred             ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEE
Confidence            468899999999999999999987777776666655

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=92.89  E-value=0.41  Score=27.90  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCE-EEEEEeec
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAG-SYQCQIGT   63 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G-~Y~C~~~~   63 (78)
                      ++|.+...|.|+|+...+......-..+.+ +.. ....+++... .+|-| .|+|++.-
T Consensus        27 v~P~~~l~v~LlkG~~~l~~~~f~~~~~~k-s~~~~~~~vtftpt-reD~g~~fsC~A~L   84 (99)
T cd07689          27 VYPFDRLEIELLKGETLLPSKSFLEDMDKK-SLETKSLEVTFTPT-IEDIGKVLVCRAKL   84 (99)
T ss_pred             cccCCceEEEEecCcceecccccccccccC-CCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence            456678899999987776543221000000 001 1134444443 66666 99999984

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG4597|consensus

Probab=91.27  E-value=0.61  Score=34.25  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=42.4

Q ss_pred             CcEEEEEe---CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103         11 NYVLAWKR---GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k---~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ...|.|-+   +...+.....  ..-.|..+.+..-|.|-+....|+|.|+|.+.+. +.....+.+.+
T Consensus       225 ~r~V~c~qv~anr~~vv~~~n--q~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s  291 (560)
T KOG4597|consen  225 YRVVTCEQVFANRENVVMRPN--QTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS  291 (560)
T ss_pred             CceeeeehhhccccceeecCc--cccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence            35889976   3333222211  1224555567789999999999999999999986 46666666644

>PHA03282 envelope glycoprotein E; Provisional

Probab=90.37  E-value=0.68  Score=33.94  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEIT   70 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~   70 (78)
                      ++-+|++.|++.+++|.|.|++.-.+..+..
T Consensus       331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW  361 (540)
T PHA03282        331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAW  361 (540)
T ss_pred             CccceEecCCCcccCceEEEEEEECCeeeee
Confidence            4458999999999999999999955544433

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=90.19  E-value=0.3  Score=35.14  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             CCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         31 TPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        31 ~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      .++.-|.+.         ...+|+|.+|..+..|-|+|++..+- ..+....|-|
T Consensus       326 ~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V  380 (500)
T PHA02914        326 AEDDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKV  380 (500)
T ss_pred             ccCCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEe
Confidence            466677665         35799999999999999999999753 4444444443

>PHA03286 envelope glycoprotein E; Provisional

Probab=89.59  E-value=0.88  Score=33.13  Aligned_cols=29  Identities=21%  Similarity=0.093  Sum_probs=23.4

Q ss_pred             eEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGTLEPKEIT   70 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~   70 (78)
                      .+|.+.|++.+|+|.|.|.+.-.+..+..
T Consensus       307 ~nL~f~nA~~s~SGLYVfVl~yNGH~eAW  335 (492)
T PHA03286        307 PSFRLANAQPTDAGLYVVVALYNGRPLAW  335 (492)
T ss_pred             CceeecCCCcccCceEEEEEEECCcceee
Confidence            37999999999999999999955544433

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=87.62  E-value=0.89  Score=32.81  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=22.2

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEIT   70 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~   70 (78)
                      +.-.|++.|++.+++|.|.|.+.-.+..+..
T Consensus       267 ~~~~l~f~~a~~~~sGLYv~V~~~nghv~aW  297 (439)
T PF02480_consen  267 NGVDLQFTNAPESASGLYVFVVYYNGHVEAW  297 (439)
T ss_dssp             TSSSEEESS--GGG-EEEEEEEEETTEEEEE
T ss_pred             CCcceEecCCCcccCceEEEEEEECCeeeee
Confidence            4568999999999999999999966644433

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03283 envelope glycoprotein E; Provisional

Probab=85.81  E-value=2.1  Score=31.75  Aligned_cols=32  Identities=13%  Similarity=0.086  Sum_probs=25.4

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH   71 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~   71 (78)
                      +.-.|.+.|++.+++|.|.|.+.-.+..+...
T Consensus       313 ~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~  344 (542)
T PHA03283        313 NRVDLLFKNAPASASGLYVFVLLYNGHPEAWT  344 (542)
T ss_pred             CCcceEeccCCcccCceEEEEEEECCeeeeeE
Confidence            44689999999999999999999655444333

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=85.77  E-value=3.5  Score=29.00  Aligned_cols=19  Identities=11%  Similarity=0.062  Sum_probs=14.2

Q ss_pred             cCCCCCCEEEEEEeeccCC
Q psy14103         48 DLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus        48 ~v~~~D~G~Y~C~~~~~~~   66 (78)
                      .|...|...|+|+|...+-
T Consensus       287 ~v~~~~~~~Y~C~V~Hsgl  305 (338)
T PHA02865        287 RVPTDMSNQIVCVVFHSTL  305 (338)
T ss_pred             EeCCCCCCCcEEEEEeCCC
Confidence            3456788889999996543

>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae

Probab=83.27  E-value=5.7  Score=25.10  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      ...-|+|++.+.+|+|.|.=.+.-+ .+......+
T Consensus       122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~  156 (161)
T PF01688_consen  122 NGVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRL  156 (161)
T ss_pred             cceEEEeCCCCcccceEEEEEEEECCCCCCcEEEE
Confidence            4456999999999999999988844 344433333

These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part

>PHA03281 envelope glycoprotein E; Provisional

Probab=82.33  E-value=3.3  Score=31.06  Aligned_cols=32  Identities=22%  Similarity=0.176  Sum_probs=25.2

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH   71 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~   71 (78)
                      +.-.|.+.+++.+++|.|.|.+.-.+..+...
T Consensus       473 n~vdL~F~nApasaSGLYVfVl~yNGHVeAWt  504 (642)
T PHA03281        473 GGSALKFVDAAESLSGLYVFIIHFNGHVEAVA  504 (642)
T ss_pred             CCcceEeccCCcccCceEEEEEEECCeeeeeE
Confidence            44579999999999999999999655444333

>KOG3515|consensus

Probab=82.32  E-value=4.5  Score=31.27  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             CCCCcEEEEEeCCEEEEeccc-ccC----CCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          8 PDKNYVLAWKRGIAILTAGST-KVT----PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         8 ~~~~~~v~W~k~~~~l~~~~~-~~~----~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.+.+.|..+.+....... ...    .-+.+. ....-|.+.....+|.|.|+|.+.+.
T Consensus       125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY-TEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             CCCCcceeeeeccEEeecccCCcccccccccCcee-ccccceeeEEEEecCCceeEcccccc
Confidence            445567889876655443221 000    011110 23456888888899999999999974

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=81.80  E-value=0.44  Score=34.33  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      +++.|.|.+++.+|+|.|+-...+..  .....+.|.|.+
T Consensus        87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             ----------------------------------------
T ss_pred             cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            56789999999999999999987543  334445556654

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=81.30  E-value=7.2  Score=21.58  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCCceEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT   72 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~   72 (78)
                      ....+.......+|+|...|.+....+......
T Consensus        41 ~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~   73 (80)
T PF05790_consen   41 TKKLVSTFTPTTEDSGTWVCTASDNEPKERESK   73 (80)
T ss_dssp             ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEE
T ss_pred             cceEEEEecCCCCCCEEEEEEEcCCceEEEEEE
Confidence            444566677788999999999954344433333

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03286 envelope glycoprotein E; Provisional

Probab=80.33  E-value=8.9  Score=28.16  Aligned_cols=46  Identities=15%  Similarity=0.065  Sum_probs=32.7

Q ss_pred             CCCCEEEE--cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         32 PDKRIQLV--DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        32 ~~~R~~~~--~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      .+++|-+.  ....|+|.++..+++|.|+-...++.  ......-|.|.|
T Consensus       115 n~p~~~I~t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~  164 (492)
T PHA03286        115 YIPNVIIGTGRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG  164 (492)
T ss_pred             cCCceEeccCCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence            34555444  34689999999999999999988763  344555556654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-17
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-16
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-08
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-06
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	2e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-06
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-06
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	9e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	1e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-05
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	3e-05
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-05
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	9e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-04
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-04
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	4e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-04
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	6e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	6e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	7e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-04

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 68.4 bits (167), Expect = 4e-17
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 9   DKNYVLAW-KRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
           + N  L W       L     K   D RI+LV       ++ ++D+  +D G Y C + T
Sbjct: 33  NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT 92

Query: 64  LEPKEITHTLEILG 77
           +  K     L +LG
Sbjct: 93  MPVKTSKAYLTVLG 106

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 68.3 bits (166), Expect = 1e-16
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 9   DKNYVLAW-KRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
            ++  L W       L  G  +   D RIQLV       ++ I+++   D G Y C I T
Sbjct: 65  HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124

Query: 64  LEPKEITHTLEIL 76
           +  +     + +L
Sbjct: 125 MPVRTAKSLVTVL 137

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 57.3 bits (138), Expect = 1e-12
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 9   DKNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT 63
            KN  L W       +      V  + + QL+    +  ++ + ++   D G Y+C   +
Sbjct: 28  RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS 87

Query: 64  LEPKEITHTLEILG 77
                    + +L 
Sbjct: 88  DSVSTKEVKVIVLA 101

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 16  WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           W + G+ +    +       R+++VDG NL I++++  D G+Y+C
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC----QIGTLEPKEITH 71
           W +G        + +  + RI +++  +L+I ++Q  DAG Y+C     +GT   K +  
Sbjct: 134 WIKG-------DSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKL 186

Query: 72  TLEIL 76
            +E+ 
Sbjct: 187 EVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 37.4 bits (87), Expect = 9e-05
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 31 TPDKRIQ-LVDGYNLQITDLQTTDAGSYQC 59
            D R     +G  L I  ++ +D G Y C
Sbjct: 50 LFDTRYSIRENGQLLTILSVEDSDDGIYCC 79

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 43.7 bits (103), Expect = 8e-07
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 30  VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           V P    Q+V G NL+I  +  +D G YQC 
Sbjct: 353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 28  TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
             +  D R+ ++    LQI+ LQ  D+G Y+C
Sbjct: 163 NPIPGDSRVVVLPSGALQISRLQPGDSGVYRC 194

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W RG              K+  L+ G NL I+++   D+G+Y C 
Sbjct: 255 WLRG------EEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCV 293

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.9 bits (100), Expect = 1e-06
 Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 15/84 (17%)

Query: 5   SGLPDKNYVLAWKRGIAILTAG-------------STKVTPDKRIQLVDGYNLQITDLQT 51
           S     +    WK    I   G             + +    + +     + L I +L+ 
Sbjct: 19  SQKK--SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 76

Query: 52  TDAGSYQCQIGTLEPKEITHTLEI 75
            D+ +Y C++   + +       +
Sbjct: 77  EDSDTYICEVEDQKEEVQLLVFGL 100

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 42.3 bits (99), Expect = 1e-06
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)

Query: 5  SGLPDKNYVLAWKRG--IAILTAGSTKVTP---------DKRIQLVD--GYNLQITDLQT 51
          S     +    WK    I IL    + +T          D R  L D   + L I +L+ 
Sbjct: 20 SQKK--SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 77

Query: 52 TDAGSYQCQIGT 63
           D+ +Y C++  
Sbjct: 78 EDSDTYICEVED 89

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 7   LPDKNYVLAWKRG----IAILTAGSTKVTPDK----RIQLVDG-YNLQITDLQTTDAGSY 57
                  + W       I      STK   +     R+ L +    L I++++  D G+Y
Sbjct: 29  PLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTY 88

Query: 58  QCQIGTLEPKEITHTLE 74
             ++      E+  TLE
Sbjct: 89  YMRVLRETENELKITLE 105

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 16 WKRG---IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
          W+RG   +A               +++   +L+I +L   D+G+Y   +
Sbjct: 32 WERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 80

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 6   GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65
           G      V    +G +   +   +    +    +   +L++  L+  D G+Y C   T  
Sbjct: 43  GESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFP 102

Query: 66  PKEITHTLEI 75
               +  + +
Sbjct: 103 QGSRSVDIWL 112

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 31 TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
            D R  ++   NLQI ++  +D G Y+C+
Sbjct: 46 ISDNRFAMLANNNLQILNINKSDEGIYRCE 75

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQ 60
           W R           +  +++  L      L + ++  +D G Y C+
Sbjct: 132 WFRN-------GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 31  TPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
             D R  ++   NLQI ++  +D G Y+C
Sbjct: 142 ISDNRFAMLANNNLQILNINKSDEGIYRC 170

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQ 60
           W R           +  +++  L      L + ++  +D G Y C+
Sbjct: 228 WFRN-------GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 266

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 16 WKRG-----IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
          W++      IA               +L     L+I  L+T D   Y+  I
Sbjct: 35 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W +         TKV        +    LQI + +  D G Y+C 
Sbjct: 144 WIKN-------QTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 30  VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           +  D R  ++    LQI  ++ TD G+Y+C+
Sbjct: 143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 34.8 bits (80), Expect = 9e-04
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 5  SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQ 60
          +G   K+  ++W         G       +RI +V    D   L I +    DAG Y+C 
Sbjct: 27 AGDA-KDKDISWFSP-----NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 5   SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           SG PD      W +  + +  + S     + RI+ +    LQI   + TD G Y+C
Sbjct: 133 SGNPDPEI--TWFKDFLPVDPSAS-----NGRIKQLRSGALQIESSEETDQGKYEC 181

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE 65
          K+  ++W         G       +RI +V    D   L I +    DAG Y+C +   +
Sbjct: 31 KDKDISWFS-----PNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85

Query: 66 PKEITHTLEI 75
            +   T+ +
Sbjct: 86 GTQSEATVNV 95

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 16  WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           WK  G  ++         D R  ++    LQI  ++ TD G+Y+C
Sbjct: 134 WKHKGRDVILK------KDVRFIVLSNNYLQIRGIKKTDEGTYRC 172

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W +    +         +K I   D   L I ++   D   Y C 
Sbjct: 230 WTKDGEPIENEEED--DEKHIFSDDSSELTIRNVDKNDEAEYVCI 272

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 30  VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           +    RIQ+  G  L IT +  +DAG YQC
Sbjct: 336 LLTRDRIQIEQG-TLNITIVNLSDAGMYQC 364

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 5   SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
               +     AW                ++R    +  NL I  ++ +D G+Y C 
Sbjct: 128 PHSGE--LSYAWIFN------EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 40.4 bits (94), Expect = 8e-06
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 7   LPDKNYVLAWKRG---IAILTAGSTKVTP--------DKRIQLVDGYNLQITDLQTTDAG 55
             +K   + W      +A +    TK            KR+     Y+LQ+++L+  D G
Sbjct: 24  AGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83

Query: 56  SYQCQIGTLEPKEITHT 72
           SY+ QI T    +++  
Sbjct: 84  SYRAQISTKTSAKLSSY 100

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 7/44 (15%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           WK+         + +        + G  L IT  + +DAG Y C
Sbjct: 146 WKKD-------GSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 35  RIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74
           R     D + L++ +LQ  D G YQC I   +P  +    +
Sbjct: 61  RTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ 101

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 30  VTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           +    RI++  G  L+ + L   D+G YQC
Sbjct: 335 LASQNRIEVSGG-ELRFSKLVLEDSGMYQC 363

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 7   LPDKNYVLAWKRG----IAILTAGSTKVTPDK----RIQLVDG-YNLQITDLQTTDAGSY 57
                  L W       I        K   +     R+ L      L+I ++   D G Y
Sbjct: 25  PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDY 84

Query: 58  QCQIGTLEPKEITHTLEIL 76
             ++      +   T+E+ 
Sbjct: 85  YMRMLHETEDQWKITMEVY 103

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 16 WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ----IGTLE 65
          WKR +   T      + D RI++       +L I D++ +D+G Y C+    IG  +
Sbjct: 34 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 90

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 32  PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           P ++  L +GY++          G Y   
Sbjct: 368 PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 26 GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
          G T    D R  + +   LQI +L+ +D G+Y C
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTC 79

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens} Length = 106

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 7   LPDKNYVLAWKRGIA-----ILTAGSTKVTPDKRIQLVD-----GYNLQITDLQTTDAGS 56
           L D      W R +      ++++   +  P  R   +         +++  LQ  DAG 
Sbjct: 23  LQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGE 82

Query: 57  YQCQIGTLEPKEITHTLEI 75
           Y C +      +I H + +
Sbjct: 83  YGCMVDGARGPQILHRVSL 101

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 37.3 bits (87), Expect = 4e-05
 Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 28 TKVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          + ++   +  L  +G  + L + ++   D GSY    G+
Sbjct: 46 SDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS 84

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 38.0 bits (88), Expect = 4e-05
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 7   LPDKNYVLAWKRG----IAILTAGSTKVTPDK---RIQLVD-GYNLQITDLQTTDAGSYQ 58
           LP+    L W       I    +  +K    K   R++L      L I+ +Q  D  +Y 
Sbjct: 30  LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89

Query: 59  CQIGTLEPKEITHT 72
            ++      E    
Sbjct: 90  MRVLKKTGNEQEWK 103

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.4 bits (87), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
          W++ G+ + T  S       RI+ ++   LQI   +  D G Y C
Sbjct: 42 WRKDGVLVSTQDS-------RIKQLENGVLQIRYAKLGDTGRYTC 79

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 38.0 bits (88), Expect = 5e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 16 WKR-GIAILTAGSTKVT----PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          W R G  +  A ST+       D++   +    L+IT LQ +D G YQC 
Sbjct: 37 WLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCL 86

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 37.0 bits (86), Expect = 6e-05
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          ++ P  +      G    L I + Q TD   Y    G 
Sbjct: 47 EIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD 84

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 37.0 bits (86), Expect = 6e-05
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          +V     + L  +     L +  +Q  D+G Y C+I  
Sbjct: 52 EVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD 89

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
           WK+ +         +     I++ +G  L + ++Q T+ G Y C+   
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEG-TLHVDNIQKTNEGYYLCEAIN 794

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 16  WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           W+  G  I      +V     +       L IT +   D G Y+C
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 16 WKRG---IAILTAGSTKVTPDK--RIQLVDG-YNLQITDLQTTDAGSYQCQIGTLEPKEI 69
          WK+    +A L     +       R+ L     +L I +L ++D   Y+ +        +
Sbjct: 28 WKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN-ITDTM 86

Query: 70 THTLEIL 76
             L +L
Sbjct: 87 KFFLYVL 93

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 8   PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           P     ++  R       G  +V               I   +  D+ +Y C+
Sbjct: 116 PALKDSVSLMR------EGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCK 162

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 14/63 (22%)

Query: 4  LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQ 60
          LS +      + W +G          +    R  L  DG    LQI  L   DAG Y C 
Sbjct: 43 LSKMAP----VEWWKG-------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91

Query: 61 IGT 63
           G 
Sbjct: 92 CGK 94

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 29  KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQI 61
            +    R++     +   LQI +    D G Y  ++
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 34.9 bits (80), Expect = 8e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 30 VTPDKRIQLVDG-YNLQITDLQTTDAGSYQC 59
          ++ D++    DG   L IT+    DAG Y+ 
Sbjct: 48 ISVDEKHDFKDGICTLLITEFSKKDAGIYEV 78

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 36.3 bits (84), Expect = 9e-05
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          +    R ++     +++ D    D+G Y C 
Sbjct: 49 LVESNRTRITGEE-VEVRDSIPADSGLYACV 78

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 36.6 bits (85), Expect = 9e-05
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
           +    R  L  DG    LQI DL   DAG Y C  G 
Sbjct: 46 TLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ 83

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 31  TPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
            P    + V G  +   D Q +    YQC 
Sbjct: 356 APPNPNREVAGDTIIFRDTQISSRAVYQCN 385

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.6 bits (86), Expect = 9e-05
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 30  VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
                R       NL I   + TDAG   C+
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCE 231

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117

 Score = 36.8 bits (85), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 3  YLSGLPDKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
          Y     +++    W R          I + G        R  L +      + + I  L 
Sbjct: 24 YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83

Query: 51 TTDAGSYQCQIGT 63
            D+G Y+C +G 
Sbjct: 84 QDDSGRYKCGLGI 96

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 37.4 bits (87), Expect = 9e-05
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 30  VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
           +      Q+    D Y+L I +    D+G+Y   
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 36.6 bits (85), Expect = 9e-05
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 30 VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          +    R ++     +++ D    D+G Y C 
Sbjct: 43 LAESNRTRITGEE-VEVQDSVPADSGLYACV 72

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 4/41 (9%), Positives = 12/41 (29%)

Query: 20  IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           ++++      +           +   I   +   +  YQC 
Sbjct: 122 VSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 3  YLSGLPDKNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQ 50
          Y     +++    W R          I + G        R  L +      + + I  L 
Sbjct: 24 YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83

Query: 51 TTDAGSYQCQIGT 63
            D+G Y+C +G 
Sbjct: 84 QDDSGRYKCGLGI 96

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 10  KNYVLAWKRG-------IAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSY 57
            N      R        + + T G      + RI L        +++ IT L+  DAG Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305

Query: 58  QCQIGT 63
            C   +
Sbjct: 306 LCGAHS 311

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 5/64 (7%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQIGTLEPKEITH 71
           W          S    P K     D  +    L +  +   D G Y C +        T 
Sbjct: 480 WNNTG-CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETA 538

Query: 72  TLEI 75
            + +
Sbjct: 539 AVYV 542

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 36.1 bits (82), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGT 63
               + I ++G        RI+L         +++ I  L+ +DAG Y CQ G 
Sbjct: 153 LYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGD 206

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 35.4 bits (80), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
            +  + + + G  K   + R+ L++      + + +  L + DAG Y C          T
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434

Query: 71  HTL 73
             +
Sbjct: 435 VEI 437

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 32  PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
              R  + D   L I  ++  D G Y C+
Sbjct: 351 SGGRATVTDS-GLVIKGVKNGDKGYYGCR 378

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
                     D  +L     Q +D G YQC
Sbjct: 49 NWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 34.9 bits (80), Expect = 8e-04
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 5   SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDA---GSYQCQ 60
           +  P       WK+ ++     +     D+RI      NL  T +   D      Y C 
Sbjct: 126 NAYPKPLIT--WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 16  WKRGIAILTAGST-------KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W + +    +          KV     I   +   L + ++   DAG Y C+
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 30 VTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQ 60
             + RI         ++L +  +  +D G+Y C 
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 30  VTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQI 61
           ++ D++    DG   L IT+    DAG Y+  +
Sbjct: 263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 295

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
           V    R Q    G  Y L + +   +DAG     + 
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR 85

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 6/56 (10%)

Query: 5  SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
                +    W      +           +R       NL I +++ +D G+Y C
Sbjct: 33 PYHFPDDLSYRWLLNEFPVFITMD-----KRRFVSQTNGNLYIANVEASDKGNYSC 83

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 32  PDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           P        G  L+I ++Q  D G Y+C
Sbjct: 155 PSTAEISTSGAVLKIFNIQLEDEGIYEC 182

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGTLE 65
           + P  +  L  +G    L + +L+  D+G Y C  G   
Sbjct: 47 VLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT 86

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 16 WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
          W R    L        P+ RI   +   L        D G+Y C +
Sbjct: 54 WTRQDRDLEEPINFRLPENRIS-KEKDVLWFRPTLLNDTGNYTCML 98

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 35.2 bits (80), Expect = 8e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 32  PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
            +    + +G NL       ++ G+Y C 
Sbjct: 167 QNFNNVIPEGMNLSFLIALISNNGNYTCV 195

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
           W  G ++  +   +++   R        L + ++   DA +Y C I
Sbjct: 501 WVNGQSLPVSPRLQLSNGNRT-------LTLFNVTRNDARAYVCGI 539

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 9/47 (19%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQI 61
           W             +    R+QL  D   L +  +   D G Y+C I
Sbjct: 323 WVNN--------QSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGI 361

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 35.3 bits (81), Expect = 7e-04
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 9/47 (19%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQI 61
           W             +    R+QL      L + ++   D  SY+C+ 
Sbjct: 145 WVNN--------QSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 35.3 bits (81), Expect = 7e-04
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 10  KNYVLAWKRGIAILTAGSTKVTP----DKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE 65
           K   +   R I     G+ + TP      R  +    +L I ++   D G Y   +   +
Sbjct: 35  KGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSD 94

Query: 66  PKEITHTLEI 75
                 T + 
Sbjct: 95  LVNEEATGQF 104

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          KV   + + +  DG  + L + + +  D+G ++C+   
Sbjct: 49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
           +   ++  +V +G    L I      DAG Y C++ 
Sbjct: 47 AIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT 63
          K++   ++++        L +      +AG Y C+ G 
Sbjct: 50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 11/38 (28%)

Query: 35  RIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT 72
             QL     L + + Q  D   Y C +          T
Sbjct: 70  PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEAT 107

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 16  WKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           W +  + + T+ +      K+++      LQI   + +D G Y+C
Sbjct: 142 WFKDFLPVDTSNNNGRI--KQLRSESIGALQIEQSEESDQGKYEC 184

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 16  W-KRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W                 +    +     L +T L+ T+ G+Y   
Sbjct: 348 WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFL 393

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 30 VTPDKRIQLVDGY-NLQITDLQTTDAGSYQCQ 60
          +  D  I L DG  NL I  ++  D G Y CQ
Sbjct: 51 LVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 30 VTPDKRIQLV---DGYNLQITDLQTTDAGSYQC 59
          ++   R Q+         +I+ +Q +D G+Y  
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 3/48 (6%)

Query: 16  WKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           W +   ++          +    +       L    L  +D G Y C+
Sbjct: 142 WFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
           W++         ++  P   +  +    + + +  +  +G+Y C +
Sbjct: 156 WQKL------SDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTV 195

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 30  VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
           +    + ++        L++ +L   D+G Y C+
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 10/48 (20%)

Query: 16  WKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQ 60
           W +          ++   K+ +++      ++ I ++ + D G YQC+
Sbjct: 226 WHKD-------KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 35.4 bits (82), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQC 59
           V    R+++V  G  + L I +  T D G Y  
Sbjct: 45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 8  PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK 67
          P +  VL  +    ++             +  + + L +T    +  G+Y C++   E +
Sbjct: 33 PGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE 92

Query: 68 EITHTLEI 75
           +T    +
Sbjct: 93 -VTKQEHL 99

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          ++    + Q   +G    L I+ L+  D+ +Y C IG 
Sbjct: 47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ 84

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 29 KVTPDKRIQL-VDG--YNLQITDLQTTDAGSYQCQIGTLE 65
           +      ++  DG  + L + + Q    G    Q    +
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 3  YLSGLPDKNYVLAWKR---GIAILT-AGSTKVTPD--KRIQLVDGYNLQITDLQTTDAGS 56
          +LS    +   + W++    +AI        ++P    R+    G  L +  L   D G 
Sbjct: 26 HLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGE 85

Query: 57 YQCQIGT 63
          Y C   T
Sbjct: 86 YFCIYHT 92

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 29 KVTPDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIG 62
          +V P KRI +   G  + L I D++  D G Y     
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A Length = 117

 Score = 35.0 bits (81), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 11 NYVLAW---KRG-----IAILTAGSTKVTPDKRIQLV-DG----YNLQITDLQTTDAGSY 57
          + +L W            A  + G ++   D R Q++       +++ I D +  D+G Y
Sbjct: 29 DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY 88

Query: 58 QCQIGTLEPK 67
           C   +L PK
Sbjct: 89 LCGAISLHPK 98

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 28  TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           +  +   RI +++   L  + +  +D G Y C
Sbjct: 393 SHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} Length = 111

 Score = 34.9 bits (80), Expect = 4e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 34  KRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLEPKEIT 70
           +RI  +   YNL I+DL+  DAG Y+  I T      T
Sbjct: 63  ERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTT 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 34.6 bits (80), Expect = 4e-04
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 29 KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQC 59
           V  D   +++      ++L    ++ +DAG+Y C
Sbjct: 45 TVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 35.4 bits (81), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 5  SGLPDKNYVLAWKRG---IAILTAGSTKVTPD--KRIQLV--DGYNLQITDLQTTDAGSY 57
          S        + W++    +  + +G   + P+   R      +  ++ I  L+ +D G+Y
Sbjct: 21 SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTY 80

Query: 58 QCQIGTLEPKEITH 71
          +C +   E      
Sbjct: 81 ECVVLKYEKDAFKR 94

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 29 KVTPDKRIQLVDGYNLQITDLQTTDAGSYQC 59
           + P +R+ +     LQ+ +    D+G+Y C
Sbjct: 49 GLVPSERVLVGPQ-RLQVLNASHEDSGAYSC 78

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 35.5 bits (81), Expect = 5e-04
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 35  RIQLVDG----YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI 75
           R++ +        ++++ L+  D G Y C+  T         L +
Sbjct: 81  RVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 33 DKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          +K I   +   L    +   DAG Y C+
Sbjct: 56 NKEIPNGNTSELIFNAVHVKDAGFYVCR 83

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 4  LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT 63
          L+          W +          ++T  ++         +I   +  D+G Y C    
Sbjct: 27 LTSSSHTLMYSYWTKN-------GVELTATRKN--ASNMEYRINKPRAEDSGEYHCVYHF 77

Query: 64 LEPKEITHTLEILG 77
          +   +   T+E+  
Sbjct: 78 VSAPKANATIEVKA 91

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 16 WKRG----IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
          WK       A++   S    P           +  + +   D G Y C 
Sbjct: 35 WKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM 83

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 34.7 bits (80), Expect = 6e-04
 Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 28 TKVTPDKRIQLV--DG--YNLQITDLQTTDAGSYQCQIGTLE 65
          T +  ++  ++    G  + L +  L   D+G+   + G   
Sbjct: 52 TPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQR 93

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} Length = 124

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 10 KNYVLAWKRGIA-------ILTAGSTKVTPDKRIQLVDG-----YNLQITDLQTTDAGSY 57
          + Y+  W RG         + T+GS +     R+ + D      + + + DL  TDA +Y
Sbjct: 31 ETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTY 90

Query: 58 QCQIGT 63
           C I  
Sbjct: 91 WCGIEK 96

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 34.5 bits (79), Expect = 6e-04
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 18/86 (20%)

Query: 8   PDKNYVLAWKRG--------IAILTAGSTKVTPDK--RIQLVDGYN-----LQITDLQTT 52
                   W RG          ++     +VT  K  R  L    +     L I +   +
Sbjct: 24  YRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES 83

Query: 53  DAGSYQCQI---GTLEPKEITHTLEI 75
           D+G Y C++   G    +++T +L++
Sbjct: 84  DSGLYCCRVEIPGWFNDQKVTFSLQV 109

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 44  LQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL 76
           LQITD++  DAG Y+C I          T+++ 
Sbjct: 82  LQITDVKLQDAGVYRCMISYGGADYKRITVKVN 114

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 34.9 bits (80), Expect = 7e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 26  GSTKVTPDKRIQLVDG-YNLQITDLQTTDAGSYQCQI 61
              +++ D++    DG   L IT+    DAG Y+  +
Sbjct: 154 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVIL 190

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 34.2 bits (79), Expect = 7e-04
 Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 32 PDKRIQLV-DG--YNLQITDLQTTDAGSYQCQIGT 63
          P  R ++  +G  + L I      DA  Y      
Sbjct: 51 PKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 34.2 bits (78), Expect = 7e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 16 WKRGIAILTAGSTKV-----TPDKRIQLVDGYNLQITDLQTTDAGSYQCQI 61
          W +G  +  +              R   V  + L ITD Q    GSY+C++
Sbjct: 41 WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEV 91

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 32  PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
           P ++  L +GY++          G Y   
Sbjct: 368 PCEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.55
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.52
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.51
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.48
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.45
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.44
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.44
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.41
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.41
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.4
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.4
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.39
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.38
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.38
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.37
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.37
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.37
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.36
1he7_A	126	High affinity nerve growth factor receptor; transf	99.36
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.35
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.35
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.35
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.35
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.34
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.34
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.34
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.33
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.32
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.32
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.32
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.32
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.3
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.29
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.29
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.28
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.27
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.27
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.27
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.26
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.26
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.26
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.26
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.26
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.25
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.24
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.23
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.23
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.23
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.23
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.22
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.22
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.22
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.22
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.21
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.21
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.21
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.21
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.2
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.2
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.2
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.19
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.19
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.19
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.18
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.16
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.15
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.15
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.15
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.15
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.12
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.11
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.11
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.1
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.09
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.08
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.07
1xt5_A	135	Variable region-containing chitin-binding protein	99.06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.06
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.06
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.03
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.03
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.03
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.03
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.03
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.03
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.03
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.02
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.02
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.01
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.01
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.01
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.01
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.0
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.0
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.0
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.0
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.0
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.99
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.99
3khq_A	133	B-cell antigen receptor complex-associated protei	98.98
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.98
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.98
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.98
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.98
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.98
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.98
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.97
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.96
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.96
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.96
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.96
2ens_A	96	Advanced glycosylation END product-specific recept	98.95
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.95
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.95
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.95
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.95
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.95
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.94
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.94
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.94
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	98.94
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.94
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.93
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.93
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.93
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.93
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.93
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.92
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.92
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.92
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.92
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.91
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.91
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.91
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.91
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.91
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.91
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.9
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.9
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.89
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.89
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.89
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.89
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.89
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.89
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.88
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.88
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.88
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.88
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.87
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.87
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.87
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.86
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.86
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.86
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.86
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.86
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.86
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.85
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.85
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.85
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.85
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.85
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.85
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.84
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.84
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.84
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.84
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.84
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.83
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.83
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.83
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.83
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.83
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.83
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.83
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.83
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.83
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.83
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.83
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.83
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.82
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.82
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.82
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.82
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.82
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.82
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.82
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.82
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.81
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.81
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.81
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.81
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.81
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.8
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.8
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.8
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.8
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	98.8
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.79
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.79
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.79
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.79
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.79
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.79
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.79
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.78
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.78
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.78
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.78
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.78
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.78
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.78
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.78
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.78
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.78
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.78
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.78
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.78
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.77
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.77
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.77
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.77
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.77
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.77
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.77
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.77
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.77
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.77
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.77
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.77
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.77
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.76
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.76
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.76
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.76
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.76
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.76
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.76
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	98.76
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.76
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.76
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.75
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.75
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.75
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.75
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.75
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.75
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.75
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.75
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.75
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.75
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.75
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.75
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.75
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.74
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	98.74
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.74
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.74
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.74
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.74
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.74
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.74
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.74
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.74
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.73
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.73
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.73
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.73
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.73
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.73
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	98.72
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.72
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.72
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.72
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.72
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.72
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.72
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.72
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.72
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	98.72
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.72
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.72
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.71
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	98.71
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.71
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.71
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.71
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.71
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.7
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	98.7
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.7
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.7
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.7
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	98.7
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.7
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.7
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.69
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.69
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.69
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.69
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.69
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	98.69
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.69
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.69
3k1k_C	123	Enhancer; nanobody, antibody-complex, chromophore,	98.69
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.69
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.69
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.69
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.69
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.68
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.68
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.68
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.68
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.68
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.68
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.68
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.68
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.67
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.67
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	98.67
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.67
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.67
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.67
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.67
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.67
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	98.67
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.66
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.11
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.66
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.66
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	98.66
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.65
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.65
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	98.65
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.65
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	98.65
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	98.65
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.65
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.64
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.64
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.64
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.64
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	98.63
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.63
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.63
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.63
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.63
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.63
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.62
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.62
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.62
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.62
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.62
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.61
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.61
2vyr_E	153	Human single domain antibody; zinc, complex, nucle	98.61
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	98.61
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.61
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.61
3lh2_H	137	FV 4E10 heavy chain; epitope-scaffold, immune syst	98.6
3k81_A	127	Single strand antibody VHH domain; krepa6, single	98.6
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.6
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.6
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.6
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.6
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.59
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.59
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.59
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.59
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.59
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.59
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	98.58
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.58
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.58
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.58
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.58
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	98.58
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.58
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.58
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.58
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	98.58
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.58
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.57
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.57
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.57
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.57
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.57
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	98.57
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.57
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.57
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.57
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.56
3g9a_B	139	Minimizer; antibody complex, chromophore, luminesc	98.56
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.56
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.56
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.56
3v0a_C	152	Llama antibody F12; botulinum neurotoxin, toxin, n	98.56
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.55
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.55
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.55
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.55
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.54
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	98.54
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.54
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.54
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.54
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.53
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.53
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.53
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.53
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.53
3u6r_H	149	Antibody 1:7 (heavy chain); IG-like domain, neutra	98.52
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.52
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.52
3r0m_A	143	Llama VHH A12; IG domain, immune system; 1.50A {La	98.52
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.52
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	98.52
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.51
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.51
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.51
3eak_A	137	NBBCII10-FGLA; antibody, nanobody, humanization, V	98.51
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.51
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.51
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.51
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.51
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.5
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.5
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.5
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.49
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.49
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.49
3k3q_A	151	Llama AA1 VHH domain; llama, VHH, antibody, BONT,	98.49
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.48
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.48
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.48
3qyc_A	146	VH domain of IGG molecule; immunoglobulin V domain	98.48
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.47
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.47
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.47
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.46
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.46
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.46
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	98.46
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.46
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.46
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.46
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.46
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.46
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.45
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.45
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.44
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.44
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.44
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.43
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	98.43
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.43
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.43
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.43
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	98.43

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.55  E-value=6.8e-14  Score=78.42  Aligned_cols=68  Identities=29%  Similarity=0.511  Sum_probs=56.0

Q ss_pred             CcEEEEEeCCE-EEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEeC
Q psy14103         11 NYVLAWKRGIA-ILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF   78 (78)
Q Consensus        11 ~~~v~W~k~~~-~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g~   78 (78)
                      .+.|.|+|++. .+..+......++||.+.    .+.+|.|.+++.+|+|.|+|.+.+.+..+..+.|.|.++
T Consensus        35 ~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           35 NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGV  107 (108)
T ss_dssp             SCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECC
T ss_pred             ccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEEEEEEEcC
Confidence            46799999764 666665555677899876    578999999999999999999999667889999999763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.52  E-value=5.1e-14  Score=79.83  Aligned_cols=67  Identities=24%  Similarity=0.394  Sum_probs=53.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|..  .|.|+|++..|...     ...||.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        29 ~~g~P~p--~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           29 FTGEPTP--EVTWSCGGRKIHSQ-----EQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEESCC--EEEEEETTEECCTT-----GGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEecCC--EEEEEECceEeeee-----ccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            5676664  89999999887542     34688775   3358999999999999999999987 4778888998874

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.51  E-value=8.3e-14  Score=79.98  Aligned_cols=65  Identities=25%  Similarity=0.423  Sum_probs=52.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..|.       .+.|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+.
T Consensus        37 ~~G~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           37 VLGEPP--PVVVWEKGGQQLA-------ASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEecC--CEEEEEECccccc-------ceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEc
Confidence            466665  4899999998874       45788765   3458999999999999999999987 4778889999875

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.1e-13  Score=77.23  Aligned_cols=61  Identities=16%  Similarity=0.298  Sum_probs=50.7

Q ss_pred             CCCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103          9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus         9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.+.|.|+|++..|.       .++|+.+..+   .+|.|.+++.+|+|.|+|.+.|. ..+..+.|.|..
T Consensus        32 ~p~p~v~W~k~g~~l~-------~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~~   95 (100)
T 2yuz_A           32 SENIPGKWTKNGLPVQ-------ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVIS   95 (100)
T ss_dssp             SSCCCEEEEETTEECC-------CCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEEC
T ss_pred             CCCCeEEEEECCEECC-------CCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEeC
Confidence            3456799999998874       4678887633   48999999999999999999997 678899999875

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=8e-13  Score=73.30  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+.       ...|+.+.    ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+|
T Consensus        29 ~~g~p~--p~v~W~k~g~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~   99 (99)
T 1g1c_A           29 VVGKPD--PECEWYKNGVKIE-------RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK   99 (99)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEeCC--CEEEEEECCEECC-------CCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEecC
Confidence            345554  5899999988774       34566543    3458999999999999999999987 47788999999886

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.44  E-value=4.9e-13  Score=74.20  Aligned_cols=67  Identities=24%  Similarity=0.393  Sum_probs=51.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|.|.  +.|.|+|++..+..      .+.|+....+   .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|+
T Consensus        29 ~~g~p~--p~v~W~k~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~   99 (99)
T 1u2h_A           29 VQGEPK--PVVSWLRNRQPVRP------DQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE   99 (99)
T ss_dssp             EEEESC--CEEEEEETTEECCC------BTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             EEEcCC--CEEEEEECCEECCC------CCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEECC
Confidence            455555  48999999887753      2356665533   37999999999999999999987 47788889999875

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.44  E-value=1e-12  Score=73.46  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=52.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+.       ..+|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.|+
T Consensus        32 ~~g~p~--p~i~W~k~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           32 VQSKPT--AEVKWYHNGVELQ-------ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEecCC--CEEEEEECCEECC-------CCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            345555  4899999988774       34678765   3358999999999999999999987 47788999999874

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5.1e-13  Score=74.47  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=53.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+..      .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..+
T Consensus        32 ~~g~p~--p~v~W~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           32 ATGDPL--PVISWLKEGFTFPG------RDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EECSSC--CEEEEEESSSEESS------SCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             EEEcCC--CEEEEEECCEECCC------CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            345554  47999998776642      457888888889999999999999999999987 57788888888753

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.41  E-value=8.5e-13  Score=74.01  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=46.4

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEeC
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF   78 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g~   78 (78)
                      +.|.|+|++..|.       .++|+.+..   ..+|.|.+++.+|+|.|+|.+.|.   ...++|.|.++
T Consensus        34 ~~v~W~k~g~~i~-------~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~---~~sa~L~V~~~   93 (93)
T 1waa_A           34 VHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT---KSAANLKVKEL   93 (93)
T ss_dssp             CCCEEEETTEECC-------CBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE---EEEEEEEEECC
T ss_pred             CeEEEEECCEECc-------CCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC---cEEEEEEEEcC
Confidence            5789999998874       357887763   358999999999999999999873   57888888753

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.41  E-value=2e-12  Score=71.53  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..|.       .++|+.+.   ...+|.|.+++.+|+|.|+|.+.+   .+..++|.|.-
T Consensus        24 ~p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~a~l~V~e   83 (84)
T 2lu7_A           24 GGPVRWYKDGERLA-------SQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ---DSRIFLVSVEE   83 (84)
T ss_dssp             STTCEEEETTEECC-------CCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT---TCEEEEEEECC
T ss_pred             CcEEEEEECCEEcc-------ccccEEEeecCCeEEEEecCCCCcccEEEEEEECC---EEEEEEEEEEC
Confidence            34689999998885       45788776   345899999999999999999855   46778888764

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.40  E-value=2.9e-12  Score=74.46  Aligned_cols=67  Identities=16%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             CcEEEEEeC-CEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKRG-IAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.|.|++. ..++.........++||.+..    .++|.|.+++.+|+|.|+|.+.+.+..+..+.|.|++
T Consensus        30 ~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~l~V~~  101 (124)
T 3rbg_A           30 NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLA  101 (124)
T ss_dssp             TCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEEEEEEe
Confidence            468999984 444443333334678998753    6899999999999999999999877777888888875

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-12  Score=70.99  Aligned_cols=67  Identities=21%  Similarity=0.349  Sum_probs=50.5

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC--eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG--YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~--~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +|.|.  +.|.|+|++..+...     ...++....+  .+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.++
T Consensus        30 ~g~p~--p~v~W~~~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           30 SGLPA--PDVSWYLNGRTVQSD-----DLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EEESC--CEEEEEETTEEECCC-----SSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EeeCC--CEEEEEECCEECcCC-----CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEec
Confidence            44444  489999998877542     1234444433  49999999999999999999987 47788999998764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.38  E-value=2.5e-12  Score=73.34  Aligned_cols=65  Identities=12%  Similarity=0.299  Sum_probs=50.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        31 ~~g~p~--p~i~W~k~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           31 VTGTQP--ITCTWMKFRKQIQ-------ESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             EESSSS--CEEEEEESSSBCC-------CSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             EEcCCC--CEEEEEECCEECc-------CCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEEC
Confidence            445444  6899999876653       34688776   3578999999999999999999987 4667788888875

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.38  E-value=8.4e-12  Score=69.06  Aligned_cols=66  Identities=23%  Similarity=0.444  Sum_probs=52.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|...+.+.|.|+|++..+.       .+.|+.+. +.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus        21 l~C~~~~~p~v~W~k~g~~~~-------~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   87 (95)
T 4hwu_A           21 LQCMLKDAAVISWTKDGVHLG-------PNNRTVLI-GEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTD   87 (95)
T ss_dssp             EECCCCTTCEEEEEETTEEEC-------CCSSEEEE-TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EEEEeCCCCEEEEEECCEECC-------CCceEEEe-CCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeC
Confidence            444445568999999988774       35688765 569999999999999999999986 4667788887753

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.37  E-value=3.1e-12  Score=70.75  Aligned_cols=65  Identities=23%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..+.       .+.|+.+..   ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        30 ~~g~p~--p~v~W~~~g~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           30 ATGEPR--PTAIWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEESC--CEEEEEETTEECC-------SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEecCC--CEEEEEECCEECc-------CCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEEe
Confidence            345554  5899999887764       357887763   348999999999999999999987 4778888888875

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.37  E-value=4.1e-12  Score=72.14  Aligned_cols=69  Identities=26%  Similarity=0.373  Sum_probs=49.8

Q ss_pred             EeccCC-CCcEEEEEeCCEEEEecccccCCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEE
Q psy14103          4 LSGLPD-KNYVLAWKRGIAILTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHT   72 (78)
Q Consensus         4 ~~~~~~-~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~   72 (78)
                      ++|.|. ..+.|.|+|++.....    .....||.+.         ..++|.|.+|+.+|+|.|+|.+.|. +..+..+.
T Consensus        28 ~~g~p~~~~p~v~W~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  103 (108)
T 3cx2_A           28 VAGASLLKPPVVKWFKGKWVDLS----SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFN  103 (108)
T ss_dssp             EECC-CCSCCEEEEEETTTEEGG----GGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ECCCccCCCcEEEEccCCccccc----ccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCceEEEEE
Confidence            456664 3478999997632211    1123577654         2578999999999999999999987 57788899


Q ss_pred             EEEE
Q psy14103         73 LEIL   76 (78)
Q Consensus        73 L~V~   76 (78)
                      |+|.
T Consensus       104 L~V~  107 (108)
T 3cx2_A          104 LTVH  107 (108)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9885

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.36  E-value=8.3e-12  Score=74.11  Aligned_cols=67  Identities=28%  Similarity=0.535  Sum_probs=52.5

Q ss_pred             CcEEEEEe-CCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.|.|++ +...+..++.....++||.+..    +++|.|.+++.+|+|.|+|.+.+.+..+..++|.|..
T Consensus        67 ~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~L~V~~  138 (145)
T 1z9m_A           67 DSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLG  138 (145)
T ss_dssp             TCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred             CcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcCCCceEEEEEEEEe
Confidence            46899997 3444554444445678998763    6899999999999999999999876777888888875

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.36  E-value=2.1e-12  Score=76.96  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=49.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~   72 (78)
                      +.|.|.+  .|+|+|++..|..       ++|+.+.          ..++|.|.+++.+|+|.|+|.|.|. +..+..+.
T Consensus        24 v~G~P~P--~I~W~knG~~l~~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~   94 (126)
T 1he7_A           24 VDGQPAP--SLRWLFNGSVLNE-------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (126)
T ss_dssp             ECCSSCC--EEEEEETTEECCC-------CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeCCC--eEEEEECCEECCC-------CCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence            5677764  8999999988853       3444321          1378999999999999999999997 47777777


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|+.
T Consensus        95 l~v~~   99 (126)
T 1he7_A           95 AAFMD   99 (126)
T ss_dssp             ECCCS
T ss_pred             EEEEc
Confidence            77653

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.35  E-value=3.9e-12  Score=73.86  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=53.1

Q ss_pred             EeccCCCCcEEEEEeCC------EEEEeccc-----c-cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceE
Q psy14103          4 LSGLPDKNYVLAWKRGI------AILTAGST-----K-VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEI   69 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~------~~l~~~~~-----~-~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~   69 (78)
                      +.++|.....+.|+|+.      .+......     . ..-.+|..+..+++|.|++|+.+|+|.|+|++.+..  ..+.
T Consensus        22 ~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~  101 (111)
T 2qsq_A           22 VHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEA  101 (111)
T ss_dssp             EESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEEEEETTSCCEEE
T ss_pred             EeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEEEEeCCCcEEEE
Confidence            34456554579999953      22211110     0 013689999999999999999999999999999763  4678


Q ss_pred             EEEEEEEe
Q psy14103         70 THTLEILG   77 (78)
Q Consensus        70 ~~~L~V~g   77 (78)
                      ++.|.|.-
T Consensus       102 ~~~L~V~~  109 (111)
T 2qsq_A          102 TGQFRVYP  109 (111)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            88888863

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.35  E-value=5e-12  Score=71.58  Aligned_cols=65  Identities=23%  Similarity=0.269  Sum_probs=49.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----E----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----V----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      +.|.|.+  .|.|+|++..|..       +.|+..    .    ..++|.|.+++.+|+|.|+|.+.|. +..+..+.|.
T Consensus        25 v~G~P~P--~i~W~k~g~~l~~-------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   95 (103)
T 1wwb_X           25 VKGNPKP--ALQWFYNGAILNE-------SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             EECSSCC--EEEEEETTEEECC-------CSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEEeCCC--EEEEEECCEECCC-------CCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEE
Confidence            5677665  8999999988753       234311    1    2345999999999999999999987 5778888888


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |.+
T Consensus        96 V~~   98 (103)
T 1wwb_X           96 FMG   98 (103)
T ss_dssp             CSC
T ss_pred             ECC
Confidence            764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=75.42  Aligned_cols=60  Identities=22%  Similarity=0.386  Sum_probs=49.8

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+..      .+.|+.+..+++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        38 p~i~W~k~g~~~~~------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           38 PTILWRKDGVLVST------QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             CEEEEEESSSBCCT------TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEEC
T ss_pred             CEEEEEECCEECcC------CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEe
Confidence            58999998766642      467898888889999999999999999999987 4667778888864

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.35  E-value=7.9e-12  Score=69.31  Aligned_cols=60  Identities=18%  Similarity=0.374  Sum_probs=47.9

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-c--CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-D--GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~--~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+.       .+.|+.+. .  ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        31 ~~~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           31 STQVTWYFGVRQLE-------NSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             TCEEEEEETTEECC-------SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEETT
T ss_pred             CCEEEEEECCEECc-------CCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEEe
Confidence            35899999987764       45788774 2  349999999999999999999987 4667788888753

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.34  E-value=3.7e-12  Score=73.41  Aligned_cols=65  Identities=26%  Similarity=0.381  Sum_probs=50.8

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +|.|.  +.|.|+|++..+..      ...|+.+..+    .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        40 ~g~p~--p~v~W~k~~~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           40 SAIPP--PKLFWKRNNEMVQF------NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             CCBSC--CEEEEEETTEECCC------CBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eccCC--CEEEEEECCEECcC------CCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeC
Confidence            44444  48999999877643      3478877632    28999999999999999999986 4677888888875

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=9.3e-12  Score=71.41  Aligned_cols=65  Identities=17%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+.        ..|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.++
T Consensus        48 ~~g~P~--p~i~W~k~g~~l~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           48 FQGKPR--PQVVWTKGGAPLD--------TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             EEEESC--CEEEEEETTEECC--------CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECC
T ss_pred             EccCCC--CEEEEEECCEECC--------CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            345554  4799999988773        2455544   2456999999999999999999987 56778888888753

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.34  E-value=7.5e-12  Score=72.54  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=50.0

Q ss_pred             CcEEEEEeCCEEEEec--c-c-cc--CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEEeC
Q psy14103         11 NYVLAWKRGIAILTAG--S-T-KV--TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEILGF   78 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~--~-~-~~--~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~g~   78 (78)
                      ...|.|+|+...+..-  . . ..  .-.+|+.+..+.+|+|.+++.+|+|.|+|++.+.  +..+..+.|+|+.+
T Consensus        34 ~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~p  109 (117)
T 3q0h_A           34 VTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES  109 (117)
T ss_dssp             EEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC
T ss_pred             EEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEcc
Confidence            4579999975443221  1 0 00  1247998877899999999999999999998753  46788899999864

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.33  E-value=5.6e-12  Score=70.82  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+..+.     ..||.+..+   .+|.|.+++.+|+|.|+|.+.+   .+..+.|.|.+
T Consensus        36 ~~v~W~k~g~~l~~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~   96 (103)
T 1x44_A           36 ANVKWFKNGEEIIPGP-----KSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---GQSSAKLSVDL   96 (103)
T ss_dssp             CCCEEEETTEECCCST-----TCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---EEEEEEEEEEC
T ss_pred             CeEEEEECCEECCCCC-----ceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC---CcEEEEEEEeC
Confidence            6789999988775321     117777633   7899999999999999999987   57788888875

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=72.38  Aligned_cols=56  Identities=20%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      +.+.|.|+|++..|.       .++|+.+..   ..+|.|.+++.+|+|.|+|.+.+   .+..++|+|
T Consensus        33 p~~~v~W~k~g~~i~-------~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~ltV   91 (91)
T 2lvc_A           33 EDAPVRWYKDGQEVE-------ESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD---ECAYFTVTI   91 (91)
T ss_dssp             TTSCCEEEETTSCCC-------CCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS---CEEEEEEEC
T ss_pred             CCcEEEEEECCEEee-------eeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc---eEEEEEEEC
Confidence            345789999987774       456777662   35899999999999999999866   356666664

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.32  E-value=1.5e-11  Score=75.03  Aligned_cols=67  Identities=18%  Similarity=0.376  Sum_probs=50.6

Q ss_pred             CCcEEEEEeCCEEEEe---cccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc--eEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTA---GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK--EITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~---~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~--~~~~~L~V~   76 (78)
                      ..+.|.|+|++..+..   +......++|+.+..+++|.|.+++.+|+|.|+|.+.+.. ..  +..+.|.|.
T Consensus        26 ~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~   98 (176)
T 1hng_A           26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   98 (176)
T ss_dssp             TEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             ccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEe
Confidence            3468999998765531   1112235789999888899999999999999999999764 43  666777775

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.32  E-value=5.8e-12  Score=71.70  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=45.4

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+.       .++||.+..++   +|.|.+++.+|+|.|+|.+   +..+..+.|.|..
T Consensus        47 p~v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l~V~~  105 (113)
T 2edh_A           47 APVEWWKGHETLR-------DGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRA  105 (113)
T ss_dssp             CCCEEEESSSBCC-------CSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---TTEEEEEEEEECC
T ss_pred             CcEEEEECCEECC-------CCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---CCCCEEEEEEEeC
Confidence            5789999877653       45789887444   8999999999999999999   5567778888764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.32  E-value=5.6e-12  Score=70.79  Aligned_cols=60  Identities=25%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|+|++..+.       .+.++.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.++
T Consensus        40 p~i~W~~~~~~~~-------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           40 PQIMWFKDNETLV-------EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             CCEEEEESSSBCC-------CBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC-
T ss_pred             CeEEEEECCeEcc-------cCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCC
Confidence            4789999876553       34566655 5689999999999999999999987 57888899988763

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.30  E-value=1.1e-11  Score=68.80  Aligned_cols=56  Identities=18%  Similarity=0.405  Sum_probs=45.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|+|++..+.       .+.|+.+. +.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|
T Consensus        38 p~i~W~k~g~~~~-------~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           38 QSINWLRDGVQLV-------ESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             CEEEEEBTTBCCC-------CCSSEEEC-SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceEEEECCEecC-------CCCCEEEe-CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            4899999877664       35677665 679999999999999999999986 46667777766

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.29  E-value=5.6e-12  Score=72.40  Aligned_cols=74  Identities=12%  Similarity=0.053  Sum_probs=48.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE----EEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ----LVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~----~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.+...+.|.|+|++..+...........++.    .....+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        32 ~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           32 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             EEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             EEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEec
Confidence            4666666789999996543221000000111111    124568999999999999999999987 4667888888865

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=6.1e-12  Score=74.16  Aligned_cols=64  Identities=14%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             CCcEEEEEeCCE-EEEecccccCCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103         10 KNYVLAWKRGIA-ILTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus        10 ~~~~v~W~k~~~-~l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ..+.|.|+|+.. .+..+     ...|+.+.         .+++|+|.+|..+|+|.|+|++.+. +..+..+.|+|..+
T Consensus        43 p~P~V~W~Kgk~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           43 DKPTIKWFKGKWLELGSK-----SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             SCCCCEEEETTTCCCCCS-----TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CCCcEEEeeCCEeccCCC-----CccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            456899999752 22211     13455543         2589999999999999999999987 57789999999753

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=70.29  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc--C--eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD--G--YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~--~--~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +|.|  .+.|.|+|++..+..      ...||.+..  +  .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        33 ~g~p--~p~v~W~k~g~~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           33 AGNP--KPKIYWFKDGKQISP------KSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             CCSS--CCEEEEECSSCBCCT------TCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEEC
T ss_pred             EecC--CCEEEEEECCEECCC------CCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEEC
Confidence            3444  358999998766642      356787752  2  37999999999999999999987 5777888888864

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.27  E-value=1.4e-11  Score=70.62  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.+.|+|++..+..       +.|+.+.       ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        29 ~~g~P~--p~i~W~k~g~~l~~-------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           29 VRGNPP--PTLHWLHNGQPLRE-------SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             EECSSC--CEEEEEETTEECCC-------SSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             eeeeCC--CeEEEEECCEECCC-------CCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            566554  48999999887753       3344332       3568999999999999999999987 46667777655


Q ss_pred             E
Q psy14103         76 L   76 (78)
Q Consensus        76 ~   76 (78)
                      .
T Consensus       100 ~  100 (118)
T 1wwc_A          100 L  100 (118)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.27  E-value=4e-12  Score=71.73  Aligned_cols=55  Identities=24%  Similarity=0.380  Sum_probs=43.7

Q ss_pred             EEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         14 LAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        14 v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      |.|+|++..+.       .+.|+.+..+   .+|.|.+++.+|+|.|+|.+.|. ..+..+.|.|.
T Consensus        39 v~W~k~g~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~~l~V~   96 (106)
T 2dlt_A           39 GKWYKNGVEVR-------PSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFL   96 (106)
T ss_dssp             EEEEESSCBCC-------CCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS-CCCCCBCEEEE
T ss_pred             eEEEcCCEECc-------CCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC-CceEEEEEEEE
Confidence            99999887663       3568877633   58999999999999999999986 55566666665

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=66.97  Aligned_cols=57  Identities=18%  Similarity=0.416  Sum_probs=44.3

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      ..+.|.|+|++..+.       .+.||.+..   ..+|.|.+++.+|+|.|+|.+   +..+..++|.|.
T Consensus        35 p~~~v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---g~~~~~~~l~V~   94 (95)
T 2k1m_A           35 AGVKVRWQRGGSDIS-------ASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---GSSKVKFDLKVI   94 (95)
T ss_dssp             SSCCCEEECSSSEEC-------SSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE---TTEEEEEEEEEE
T ss_pred             CCCeEEEEECCEECC-------CCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE---CCceEEEEEEEe
Confidence            346789999887764       346787763   358999999999999999999   445667888775

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.26  E-value=4.1e-11  Score=71.79  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+.    ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        65 ~~g~P~--p~v~W~k~g~~~~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A           65 VEGYPD--PEVMWFKDDNPVK-------ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET  134 (154)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEecC--CEEEEEECCEECC-------CCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeC
Confidence            455555  4799999987764       35678765    2469999999999999999999987 4667788888864

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.26  E-value=6e-12  Score=71.51  Aligned_cols=64  Identities=25%  Similarity=0.410  Sum_probs=50.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+.       .+.|+.+..   +.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        38 ~~g~p~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           38 TDGEPV--PTVTWLRKGQVLS-------TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EECSSC--CBCCBCSSSSCCT-------TCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             EEEcCC--CEEEEEECCEECC-------CCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            456555  5789999776553       467887763   589999999999999999999987 577788888774

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.26  E-value=2.2e-11  Score=67.62  Aligned_cols=66  Identities=15%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +|.|.  +.|.|+|++..+....    ...++... ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus        33 ~g~p~--p~v~W~~~~~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~Vv  100 (100)
T 3caf_A           33 GGNPM--PTMRWLKNGKEFKQEH----RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV  100 (100)
T ss_dssp             EEESC--CEEEEEETTEECCGGG----STTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cccCC--CEEEEEECCEEccccc----ccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEEC
Confidence            45554  4799999988775422    12334444 4569999999999999999999986 466777777763

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4.6e-11  Score=67.70  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=46.4

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ..+.+.|+|++..+.       ...|+.+..+   .+|.|.+++.+|+|.|+|.+.+   .+..+.|.|..
T Consensus        40 p~~~v~W~k~g~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~  100 (113)
T 2cpc_A           40 PWAEVRWTKDGEEVV-------ESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD---ESASFTVTVTE  100 (113)
T ss_dssp             TTCCCEEEETTEECC-------CBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS---CEEEEEEEEEC
T ss_pred             CCCeEEEEECCEECc-------cCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec---CcEEEEEEEec
Confidence            446789999988774       3467777633   6899999999999999999988   66778888764

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.25  E-value=3.9e-11  Score=70.34  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=45.4

Q ss_pred             CCcEEEEEeCC----EEEE-ecccc-----cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEE
Q psy14103         10 KNYVLAWKRGI----AILT-AGSTK-----VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHT   72 (78)
Q Consensus        10 ~~~~v~W~k~~----~~l~-~~~~~-----~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~   72 (78)
                      ....|.|+|+.    ..+. .+...     ..-.+|+.+.      .+++|+|.+|+.+|+|.|+|++.+. +..+..+.
T Consensus        36 ~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~  115 (125)
T 4gos_A           36 SDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLE  115 (125)
T ss_dssp             GGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHCEEEEEEEEeCCCeEEEEEE
Confidence            34689999842    1222 22111     1124688775      3579999999999999999999986 36677777


Q ss_pred             EEE
Q psy14103         73 LEI   75 (78)
Q Consensus        73 L~V   75 (78)
                      |.|
T Consensus       116 LkV  118 (125)
T 4gos_A          116 YKT  118 (125)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.24  E-value=7.8e-11  Score=66.81  Aligned_cols=46  Identities=24%  Similarity=0.450  Sum_probs=38.5

Q ss_pred             CCCCEEEEcC------eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         32 PDKRIQLVDG------YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        32 ~~~R~~~~~~------~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ..+|+.+..+      ++|+|.+++.+|+|.|+|.+.+.. ..+..++|.|..
T Consensus        73 ~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           73 LKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             TTTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCeeEEEcccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            3578888754      899999999999999999999864 557888888864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.23  E-value=2.3e-11  Score=66.99  Aligned_cols=63  Identities=17%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             EeccCCCCcEEEEEeCC--EEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGI--AILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~--~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++  ..+..       +.++... ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        26 ~~g~P~--p~i~W~k~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           26 FIGAPD--PTATWTVGDSGAALAP-------ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EECCSS--CEEEEECSTTTCBCST-------TSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEcCC--CEEEEEECCCCcccCC-------cEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            456665  479999987  66531       2223222 4478999999999999999999987 46667777766

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.4e-12  Score=70.33  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=44.2

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEeC
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF   78 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g~   78 (78)
                      +.|.|+|++..+..+..   ...||.+..   ..+|.|.+++.+|+|.|+|.+.+   .+..+.|.|.++
T Consensus        37 ~~v~W~k~g~~i~~~~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~  100 (101)
T 2edk_A           37 AQVMWMKNGVELTREDS---FKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG---GQCEAELIVEEK  100 (101)
T ss_dssp             CCCEEEESSCBCCCSCC---SSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS---CEECCBEEEECC
T ss_pred             CEEEEEECCEECCCCCC---cceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC---CcEEEEEEEeCC
Confidence            57899998876643210   001777763   35799999999999999999987   456677877753

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.5e-11  Score=68.78  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=44.8

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+.       .+.|+.+..   ..+|.|.+++.+|+|.|+|.+.+   .+..+.|.|..
T Consensus        37 ~~v~W~k~g~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~   95 (103)
T 2edf_A           37 TPVHWLKDRKAIR-------KSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA---SKSTASLHVEE   95 (103)
T ss_dssp             CCCCEEESSCBCC-------CSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS---CEEEEEEEECC
T ss_pred             CcEEEEECCEEcc-------CCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc---CCcEEEEEEeC
Confidence            4689999876663       356887763   34799999999999999999998   47788888764

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.23  E-value=2.9e-11  Score=71.96  Aligned_cols=63  Identities=22%  Similarity=0.430  Sum_probs=47.1

Q ss_pred             CCcEEEEEeCCEE-EEecccccCCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAI-LTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ..+.|.|+|+..+ +...     ...|+.+.         .+++|+|.+|+.+|+|.|+|++.+. +..+..++|+|+.
T Consensus        38 p~P~V~W~Kgk~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           38 RKPTIKWFKGKWMDLASK-----AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCCEEEEEESSSCCHHHH-----TTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CCCcEEEeeCcCcccCCC-----CCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            4579999997522 1110     13455553         2589999999999999999999987 4778999999975

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.22  E-value=4.1e-11  Score=66.87  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+.       .+.||.+..   ..+|.|.+++.+|+|.|+|.+   +..+..+.|.|..
T Consensus        35 p~~~v~W~k~g~~i~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~V~~   95 (100)
T 2yuv_A           35 PKLEVKWYKNGQEIR-------PSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---GDEKCSTELFVRS   95 (100)
T ss_dssp             TTSCEEEEESSCBCC-------CBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---TTEEEEEEEEECC
T ss_pred             CCceEEEEECCEECC-------CCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---CCceEEEEEEEec
Confidence            456899999876653       346887763   347999999999999999999   5567778888864

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=6.3e-12  Score=71.37  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ..|.|+|++..|.       .++||.+..   ..+|.|.+++.+|+|.|+|.+.+   .+..+.|.|..
T Consensus        39 ~~v~W~k~g~~i~-------~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~a~L~V~~   97 (104)
T 2eny_A           39 DPAMWTVGGKTVG-------SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG---LTSKASLIVRE   97 (104)
T ss_dssp             SCBCCBSSSSBCS-------BCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT---EEEEECEEEEC
T ss_pred             ceeEEEECCEECC-------CCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC---eeEEEEEEEeC
Confidence            3589999887664       356887763   35899999999999999999865   46788888875

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=2.7e-11  Score=67.73  Aligned_cols=58  Identities=17%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+.       ...|+.+. ..+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|.+
T Consensus        32 p~i~W~k~g~~~~-------~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   90 (99)
T 2cr3_A           32 QSINWLRDGVQLA-------ESNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD   90 (99)
T ss_dssp             CEEEEEESSSBCC-------CCSSEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCS
T ss_pred             CeEEEEECCEECC-------CCCcEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEec
Confidence            4899999876553       34577665 679999999999999999999986 4566777776653

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.22  E-value=3e-11  Score=68.68  Aligned_cols=58  Identities=16%  Similarity=0.291  Sum_probs=43.7

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      ..+.|.|+|++..+..      .+.||.+..++   +|.|.+++.+|+|.|+|.+.+   .+..++|.|.
T Consensus        43 p~~~v~W~k~g~~l~~------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~~~l~V~  103 (104)
T 1pd6_A           43 HDAEVKWLKNGQEIQM------SGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG---EKCSTELFVK  103 (104)
T ss_dssp             SSSCCEEEESSSEECC------CSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT---EEECCEEEEE
T ss_pred             CCCEEEEEECCEECCC------CCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC---CcEEEEEEEe
Confidence            3456899998877743      12688776444   999999999999999999954   4556677765

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2e-11  Score=67.74  Aligned_cols=63  Identities=16%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|..  .|.|+|++..+..       ..+.......+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        35 ~~g~p~p--~v~W~~~g~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           35 VRGTPVP--RITWLLNGQPIQY-------ARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEESCC--CCEEEESSSBCSS-------CCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             EeeeCCC--eEEEEECCEECcc-------cceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence            3556654  6899998765532       23333335679999999999999999999986 46667777766

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.21  E-value=5.2e-11  Score=68.23  Aligned_cols=45  Identities=27%  Similarity=0.456  Sum_probs=35.9

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC---ceEEEEEEEEe
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP---KEITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~L~V~g   77 (78)
                      .+|+.+.     .+.+|.|.+++.+|+|.|+|.+.+...   .+..++|.|..
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~  119 (124)
T 1neu_A           67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE  119 (124)
T ss_dssp             TTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred             cCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEec
Confidence            5799875     458999999999999999999997642   46778888875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.21  E-value=1.8e-10  Score=64.55  Aligned_cols=67  Identities=21%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             CcEEEEEeCC--------EEEEecccc--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEE
Q psy14103         11 NYVLAWKRGI--------AILTAGSTK--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLE   74 (78)
Q Consensus        11 ~~~v~W~k~~--------~~l~~~~~~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~   74 (78)
                      ...|.|+|+.        .++......  ....+||.+..     +.+|+|.+++.+|+|.|+|.+.+.. ..+..+.|.
T Consensus        26 ~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~  105 (109)
T 2oyp_A           26 LVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELK  105 (109)
T ss_dssp             CCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEE
T ss_pred             eEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEEEEEEEcCCcccceEEEEE
Confidence            3569999842        233322211  13468998753     4799999999999999999999864 556677777


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |.-
T Consensus       106 V~V  108 (109)
T 2oyp_A          106 LDI  108 (109)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.7e-11  Score=67.76  Aligned_cols=57  Identities=21%  Similarity=0.455  Sum_probs=44.0

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+.       .+.||.+..++   +|.|.+++.+|+|.|+|.   .+..+..++|.|.+
T Consensus        36 ~~~v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---~g~~~~~~~l~V~~   95 (103)
T 2dku_A           36 AATVTWRKGLLELR-------ASGKHQPSQEGLTLRLTISALEKADSDTYTCD---IGQAQSRAQLLVQG   95 (103)
T ss_dssp             CSCCEEEESSCBCC-------SSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---CSSCBCCEEEEEEC
T ss_pred             CCeEEEEeCCEECC-------CCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---eCCceEEEEEEEeC
Confidence            45789999887663       35688877444   899999999999999998   34455567888765

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=6.1e-11  Score=66.38  Aligned_cols=54  Identities=9%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             EEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         14 LAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        14 v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      |.|+|++..+.       .+.|+.+.   ....|.|.+++.+|+|.|+|.+.+.   +..+.|.|..
T Consensus        41 v~W~k~g~~~~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~l~V~~   97 (104)
T 2e6p_A           41 ATWYKDGQKVE-------ESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV---SAFFGVTVQD   97 (104)
T ss_dssp             CEEEETTEECC-------CBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC---CCCEEEEEEC
T ss_pred             cEEeeCCEECC-------CCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc---eEEEEEEEcC
Confidence            79999988774       34677665   3368999999999999999999985   2355666653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.20  E-value=1.8e-11  Score=68.25  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=46.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEE------EEcCeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQ------LVDGYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~------~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~V   75 (78)
                      ++|.+...+.+.|+|++..+......  ...|+.      ...+.+|.|.+++.+|+|.|+|.+.+.. . .+..+.|.|
T Consensus        34 ~~~~~~~~~~i~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           34 AASSSDSPMTFAWXXDNEALQDAEME--NYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEESCCCCCEEEEEETTEECTTCEEE--EEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCCCCEEEEEccCCccccccccc--ceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            34556666899999988776432100  001111      1124799999999999999999999864 3 456677766

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.20  E-value=2e-10  Score=65.13  Aligned_cols=68  Identities=24%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             CcEEEEEeC-CE-EEEe--ccc--cc--CCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEeC
Q psy14103         11 NYVLAWKRG-IA-ILTA--GST--KV--TPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILGF   78 (78)
Q Consensus        11 ~~~v~W~k~-~~-~l~~--~~~--~~--~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g~   78 (78)
                      ...|.|+|. +. ++..  +..  ..  .-.+|+.+. .+++|+|.+++.+|+|.|+|.+.+.......++|.|..+
T Consensus        33 ~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~L~V~dp  109 (110)
T 2ptt_A           33 YRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP  109 (110)
T ss_dssp             CSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEEEEEESSSBCCEEEEEEEECC
T ss_pred             cCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEEEEEEcCCCcEEEEEEEEEcc
Confidence            458999983 22 3321  111  01  112599887 789999999999999999999987665667888988753

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.19  E-value=4.6e-10  Score=65.84  Aligned_cols=67  Identities=18%  Similarity=0.330  Sum_probs=46.9

Q ss_pred             CcEEEEEeCCE---EE-Eeccc-c-----cCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103         11 NYVLAWKRGIA---IL-TAGST-K-----VTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~---~l-~~~~~-~-----~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      .+.|.|+|+..   ++ ..... .     ..-.+|+.+..      +.+|.|.+|+.+|+|.|+|.+.+.. ..+..+.|
T Consensus        38 ~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L  117 (139)
T 1pko_A           38 GMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL  117 (139)
T ss_dssp             TSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence            47899999542   22 22111 0     11257998763      4799999999999999999999864 56677888


Q ss_pred             EEEe
Q psy14103         74 EILG   77 (78)
Q Consensus        74 ~V~g   77 (78)
                      .|.+
T Consensus       118 ~V~~  121 (139)
T 1pko_A          118 KVED  121 (139)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8864

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.19  E-value=1e-10  Score=72.37  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=49.1

Q ss_pred             CcEEEEEe--CCEEEEec-cc--ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc--eEEEEEEEE
Q psy14103         11 NYVLAWKR--GIAILTAG-ST--KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK--EITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k--~~~~l~~~-~~--~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~--~~~~~L~V~   76 (78)
                      ...|.|+|  +...|..- ..  ....++|+.+..+++|+|.+++.+|+|.|+|++.+.. ..  +..+.|.|.
T Consensus        30 ~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~  103 (182)
T 1hnf_A           30 IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  103 (182)
T ss_dssp             EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEc
Confidence            46899999  77655321 11  1135789999999999999999999999999999753 32  356677775

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.19  E-value=2.9e-11  Score=68.17  Aligned_cols=57  Identities=33%  Similarity=0.564  Sum_probs=43.9

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+.       .+.||.+..+   .+|.|.+++.+|+|.|+|.+.+   .+..+.|.|..
T Consensus        35 ~p~v~W~k~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~   94 (108)
T 2dm7_A           35 VAPVEWKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ---ERTSATLTVRA   94 (108)
T ss_dssp             SCCCEEESSSSBCC-------SSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT---EEEEEECEEEC
T ss_pred             CCeeEEEECCEECC-------CCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC---CEEEEEEEEec
Confidence            36789999876553       4578887643   3599999999999999999955   46677777764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=75.95  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=46.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.+ +.+.|.|+|++..|..       +.|+... ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.+
T Consensus       140 v~g~~-P~p~i~W~k~g~~l~~-------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          140 VANIK-KETHIVWYKDEREISV-------DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EESCC-TTCEEEEEETTEEECC-------CCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EeCCC-CCCEEEEEECCEECCC-------CCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            35551 2358999999988853       3455433 3457999999999999999999986 36666666654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.7e-11  Score=68.26  Aligned_cols=66  Identities=24%  Similarity=0.369  Sum_probs=47.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE-E-c--CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL-V-D--GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~-~-~--~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+..       +.++.. . .  ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.++
T Consensus        33 ~~g~p~--p~v~W~~~g~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  103 (110)
T 2dm3_A           33 VSGLPT--PDLSWQLDGKPVRP-------DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK  103 (110)
T ss_dssp             EECSSC--CEEECBBSSSBCCC-------CSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECC
T ss_pred             EEEcCC--CEEEEEECCEECCC-------CCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCC
Confidence            345554  58999998765532       233322 2 2  359999999999999999999987 46778888888753

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=9.5e-11  Score=65.38  Aligned_cols=58  Identities=17%  Similarity=0.440  Sum_probs=44.1

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ..+.|.|+|++..+.       .+.|+.+..+   .+|.|.+++.+|+|.|+|.+.+.   +..++|.|..
T Consensus        38 p~~~v~W~k~g~~~~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~---~~~~~l~V~~   98 (102)
T 2eo1_A           38 AQTEVTWYKDGKKLS-------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAG   98 (102)
T ss_dssp             SSSCCEEEETTEECC-------CCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE---ECCEEEEEES
T ss_pred             CCCceEEEECCEECC-------CCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC---cEEEEEEEeC
Confidence            346889999988774       3458877633   58999999999999999999653   3446777654

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.16  E-value=2.9e-11  Score=67.61  Aligned_cols=54  Identities=24%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             EEEEeCCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         14 LAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        14 v~W~k~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      |.|+|++..+.       .+.|+.+..++   +|.|.+++.+|+|.|+|.+   +..+..+.|.|.+
T Consensus        39 v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~V~~   95 (103)
T 2e7b_A           39 VKWCYGNNVLR-------PGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF---GDQTTSATLTVTA   95 (103)
T ss_dssp             CEEEESSSBCC-------CSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC---SSCBCCBCEEEEC
T ss_pred             eEEEECCEECC-------CCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE---CCcEEEEEEEEEe
Confidence            89999876653       45688887444   5999999999999999993   3345556666654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.15  E-value=8.4e-11  Score=65.18  Aligned_cols=58  Identities=28%  Similarity=0.332  Sum_probs=42.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.+.|+|+....        ...+. ...+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        40 ~~~v~W~k~~~~~--------~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (98)
T 1gl4_B           40 AYTLVWTRLHNGK--------LPSRA-MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV   98 (98)
T ss_dssp             CCEEEEEEGGGBC--------CCTTE-EEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             CcEEEEEeCCCCC--------CCcee-ecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEEeC
Confidence            3689999963211        11233 344679999999999999999999987 5677888888764

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.15  E-value=2.9e-10  Score=65.00  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=47.7

Q ss_pred             CcEEEEEeC--------CEEEEecccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEE
Q psy14103         11 NYVLAWKRG--------IAILTAGSTK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLE   74 (78)
Q Consensus        11 ~~~v~W~k~--------~~~l~~~~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~   74 (78)
                      ...|.|+|+        ..++......  ....+||++.     .+.+|+|.+++.+|+|.|.|.+.+.. ..+..++|.
T Consensus        28 ~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~v~L~  107 (115)
T 2or7_A           28 IVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLE  107 (115)
T ss_dssp             SCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCTTSCEEEEEEEE
T ss_pred             CEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECCCceeEEEEEEE
Confidence            457999985        3444433221  2356899875     35799999999999999999999754 446777777


Q ss_pred             EE
Q psy14103         75 IL   76 (78)
Q Consensus        75 V~   76 (78)
                      |.
T Consensus       108 V~  109 (115)
T 2or7_A          108 VK  109 (115)
T ss_dssp             EE
T ss_pred             Ec
Confidence            75

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.15  E-value=2.7e-10  Score=64.21  Aligned_cols=66  Identities=23%  Similarity=0.397  Sum_probs=46.6

Q ss_pred             EEEEEeCC----EEEEeccc--ccCCCCCEEEEc--------CeEEEEccCCCCCCEEEEEEeec-c-CCceEEEEEEEE
Q psy14103         13 VLAWKRGI----AILTAGST--KVTPDKRIQLVD--------GYNLQITDLQTTDAGSYQCQIGT-L-EPKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k~~----~~l~~~~~--~~~~~~R~~~~~--------~~sL~I~~v~~~D~G~Y~C~~~~-~-~~~~~~~~L~V~   76 (78)
                      .|.|+|++    .++.....  .....+|+.+..        +.+|+|.+++.+|+|.|+|.+.+ . +..+..+.|.|+
T Consensus        36 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~  115 (118)
T 3udw_C           36 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL  115 (118)
T ss_dssp             EEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEE
Confidence            59999852    12221111  122367888764        77999999999999999999987 3 366788888887


Q ss_pred             eC
Q psy14103         77 GF   78 (78)
Q Consensus        77 g~   78 (78)
                      .+
T Consensus       116 ~~  117 (118)
T 3udw_C          116 AK  117 (118)
T ss_dssp             C-
T ss_pred             eC
Confidence            53

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.15  E-value=3.7e-10  Score=69.26  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             CCcEEEEEeC-C-EEEEeccc----ccCCC--CCEEE-EcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRG-I-AILTAGST----KVTPD--KRIQL-VDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~-~-~~l~~~~~----~~~~~--~R~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ....|.|+|+ . .+......    .....  +|+.+ ..+++|+|.+++.+|+|.|+|++.+....+..+.|.|..
T Consensus        28 ~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~  104 (180)
T 2dru_A           28 SYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYE  104 (180)
T ss_dssp             SCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEEC
T ss_pred             ceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEEC
Confidence            3579999993 3 33322211    11122  79998 588999999999999999999998755556777888764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.15  E-value=4.2e-10  Score=68.67  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+..    ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       141 ~~g~p~--p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          141 VWGDPP--PEVSWLKNEKALA-------QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EECSSC--CEEEEEETTEEEC-------CCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EcCCCC--ceEEEEECCeECc-------cCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            345554  4799999988875       346777652    259999999999999999999987 4777888888864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.15  E-value=1.5e-10  Score=77.28  Aligned_cols=65  Identities=26%  Similarity=0.328  Sum_probs=52.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|.|.  +.|.|+|++..+.       .++|+.+. +++|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+.+
T Consensus       319 ~~g~P~--p~i~W~k~g~~l~-------~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~e  384 (384)
T 3kld_A          319 ANGRPK--PTYRWLKNGDPLL-------TRDRIQIE-QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE  384 (384)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CBTTEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC--
T ss_pred             CCccCC--CeEEEEECCEECC-------CCccEEEe-CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEecC
Confidence            456655  4899999988774       35688764 569999999999999999999987 58889999998753

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=67.72  Aligned_cols=65  Identities=12%  Similarity=0.035  Sum_probs=45.5

Q ss_pred             CcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGST---KVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      .+.+.|+||+..|..+..   ......||.+..++   +|+|.+++.+|+|.|+|..-+  .....+.|.|.+
T Consensus        35 ~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~--~~~ssA~L~V~~  105 (112)
T 2e6q_A           35 IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCP--GVQDSAALTIQE  105 (112)
T ss_dssp             CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEET--TEEEEEEEEEEC
T ss_pred             CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEEC--CeeEEEEEEEeC
Confidence            567899999988854210   00001188887543   899999999999999774333  345789999975

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.13  E-value=3.9e-10  Score=72.35  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=51.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC----eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG----YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~----~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..+.       .+.|+.+..+    .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..+
T Consensus       246 ~~g~p~--p~i~W~~~g~~~~-------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          246 VWGDPP--PEVSWLKNEKALA-------SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EECSSC--CEEEEEESSSEEC-------CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EecCCC--CEEEEEECCEeCC-------CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            345554  4799999887774       4567877632    39999999999999999999987 47788888988754

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.13  E-value=3.7e-10  Score=67.96  Aligned_cols=66  Identities=23%  Similarity=0.415  Sum_probs=52.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCC-CCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQT-TDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~-~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|..  .+.|+|++..+.       ...|+.+...   .+|.|.+++. +|+|.|+|.+.|. +..+..+.|.|.+|
T Consensus       127 ~~~~p~p--~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          127 YIGRPVP--AMTWFHGQKLLQ-------NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             EEEESCC--EEEEEETTEECC-------CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EeeeeCC--eeEEeECCEECC-------CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            3455554  799999988774       4567776633   7899999995 8999999999987 57789999999876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.12  E-value=1e-10  Score=80.11  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+...    ....|+.+..+++|.|.+|+.+|+|.|+|.|.+. +..+..++|.|.|
T Consensus       409 ~~g~P~--p~i~W~~~~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  477 (477)
T 2id5_A          409 ADGDPP--PAILWLSPRKHLVSA----KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS  477 (477)
T ss_dssp             EEEESC--CEEEEECTTSCBC-----------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccccCC--CEEEEEECCcccccc----CCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence            455554  589999976544221    1457888888899999999999999999999987 4778888898875

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.11  E-value=3.6e-10  Score=63.94  Aligned_cols=66  Identities=27%  Similarity=0.332  Sum_probs=43.5

Q ss_pred             CcEEEEEeCC-----E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEE
Q psy14103         11 NYVLAWKRGI-----A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~-----~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~   76 (78)
                      .+.|.|+|+.     . ++...... ...++||++.   ...+|+|.+++.+|+|.|+|.+.+....  .....|.|.
T Consensus        30 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           30 SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEE
Confidence            4679999832     2 33322111 1235899876   3579999999999999999999986321  234455554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.11  E-value=1.6e-10  Score=73.97  Aligned_cols=66  Identities=15%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.. ..|.|+|++..+..       ++|+.+. +..+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.|
T Consensus       245 ~~~~p~~-~~v~W~~~g~~~~~-------~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~~  312 (312)
T 2y23_A          245 VANIKKE-THIVWYKDEREISV-------DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA  312 (312)
T ss_dssp             EESCCSS-CEEEEEETTEEEEE-------ECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSCC
T ss_pred             EcCCCCC-CEEEEeeCCEECCC-------CCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEecC
Confidence            3444432 37999999988864       3566554 3479999999999999999999987 5778888887653

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.11  E-value=7.4e-10  Score=62.87  Aligned_cols=66  Identities=20%  Similarity=0.375  Sum_probs=46.4

Q ss_pred             CcEEEEEeCC--------EEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-Cc--eEEEE
Q psy14103         11 NYVLAWKRGI--------AILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PK--EITHT   72 (78)
Q Consensus        11 ~~~v~W~k~~--------~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~--~~~~~   72 (78)
                      ...|.|+|+.        .++.....  .....+||.+.     .+++|+|.+++.+|+|.|.|.+.+.+ ..  +..++
T Consensus        27 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~  106 (116)
T 2or8_A           27 ITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFS  106 (116)
T ss_dssp             CCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEE
T ss_pred             CcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEE
Confidence            4579999853        23333211  12357899874     45799999999999999999999764 32  66677


Q ss_pred             EEEE
Q psy14103         73 LEIL   76 (78)
Q Consensus        73 L~V~   76 (78)
                      |.|.
T Consensus       107 l~V~  110 (116)
T 2or8_A          107 LQVK  110 (116)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            7765

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=66.77  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=44.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..+..       +.|+.+.    ...+|.|.+++.+|+|.|+|.+   +..+..++|.|..
T Consensus        37 ~~g~p~--p~v~W~k~g~~l~~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~L~V~~  102 (115)
T 2cr6_A           37 ISPANY--EPVHWFLDKTPLHA-------NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALRVTE  102 (115)
T ss_dssp             EESTTC--CSCEEEESSCEECC-------SSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE---TTEECCEEEEEEC
T ss_pred             EcCCCC--CccEEEECCEECCC-------CCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE---CCeeEEEEEEEEC
Confidence            445554  36899998877743       4555543    2358999999999999999994   3455567888764

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.10  E-value=5.9e-10  Score=63.40  Aligned_cols=65  Identities=22%  Similarity=0.424  Sum_probs=46.7

Q ss_pred             cEEEEEeCC-----E-EEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         12 YVLAWKRGI-----A-ILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~-----~-~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ..|.|+|+.     . ++..... ....++||++.     ..++|+|.+++.+|+|.|.|.+.+.. ..+..+.|.|.
T Consensus        32 ~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (113)
T 1zox_A           32 YKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG  109 (113)
T ss_dssp             SCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEE
T ss_pred             ceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEE
Confidence            469999842     2 3332211 11245899886     24799999999999999999999764 56788888885

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.09  E-value=5.1e-10  Score=71.15  Aligned_cols=70  Identities=16%  Similarity=0.380  Sum_probs=53.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.+.|+|++..+..+..   ...|+.+. ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..|
T Consensus       220 ~~g~p~--p~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~k  291 (291)
T 1qz1_A          220 ADGFPE--PTMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  291 (291)
T ss_dssp             EEEESC--CEEEEEETTEECCCC-----CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEeCC--CcEEEEECCEECcCCCC---CCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEcC
Confidence            345555  47999999887754321   23577766 4468999999999999999999987 47789999999865

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.09  E-value=5.3e-10  Score=67.88  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=37.6

Q ss_pred             CCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         33 DKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      .+|+.+..      +++|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|..
T Consensus        69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~  120 (214)
T 3jz7_A           69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV  120 (214)
T ss_dssp             TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEc
Confidence            67888753      6899999999999999999999763 567788888864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.09  E-value=4.5e-10  Score=76.64  Aligned_cols=64  Identities=22%  Similarity=0.429  Sum_probs=51.2

Q ss_pred             CCcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|.|.+ ++.++..+    ....|+.+..+++|.|.+|+.+|+|.|+|.+.|. +..+..+++.|.+
T Consensus       368 p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~  433 (440)
T 3zyj_A          368 SLTSVSWITPNGTVMTHG----AYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG  433 (440)
T ss_dssp             TTSEEEEECTTSCEEESS----SCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             CCCceEEEeCCCceeecc----CCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEec
Confidence            346899999 45555432    2356898888899999999999999999999987 5778889988865

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.09  E-value=9.3e-10  Score=63.85  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=34.3

Q ss_pred             CCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         33 DKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      .+|+++.      .+++|+|.+|+.+|+|.|+|.+.+.+  ..+..+.|+|+
T Consensus        65 ~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           65 EGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             TTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred             eeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence            4677764      35789999999999999999998643  55677778775

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.09  E-value=7.8e-10  Score=66.24  Aligned_cols=64  Identities=20%  Similarity=0.443  Sum_probs=50.2

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.  +.+.|+|++..+.       ...++.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.-
T Consensus       123 ~g~p~--~~v~W~~~g~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          123 SGSPE--PAISWFRNGKLIE-------ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EEESC--CEEEEEETTEECC-------CSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCCC--CeEEEEECCEECc-------CCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            44444  4799999988774       34677766 4678999999999999999999987 4667788887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.08  E-value=3.7e-10  Score=77.26  Aligned_cols=64  Identities=16%  Similarity=0.344  Sum_probs=50.8

Q ss_pred             CCcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|.|++ ++..+...    ...+|+.+..+++|.|.+|+.+|+|.|+|.|.|. +..+..+.|.|.+
T Consensus       378 p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          378 PMSSVKWLLPNGTVLSHA----SRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST  443 (452)
T ss_dssp             TTSEEEEECTTSCEECSS----CCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CCCcEEEEeCCCcEeccC----CCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEEc
Confidence            567899999 45555332    2456888888899999999999999999999987 5778889998875

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.08  E-value=2.9e-09  Score=64.34  Aligned_cols=67  Identities=21%  Similarity=0.433  Sum_probs=51.2

Q ss_pred             EeccCCCCcEEEEEe--CCEEEEecccccCCCCCEEEEcC---eEEEEccCC-CCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR--GIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQ-TTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k--~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.+.|+|  ++..+...    ..++|+.+..+   .+|.|.+++ .+|+|.|+|.+.|. +..+..+.|.|.
T Consensus       116 ~~g~p~--p~i~W~~~~~g~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          116 SVGYPH--PEWMWRKKENGVFEEIS----NSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSSC--CEEEEEEEETTEEEECC----CTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eCccCC--CceEEEEcCCCceeeee----cCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            355554  4899999  77776532    25688887632   489999999 79999999999987 567777788775

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.08  E-value=1.2e-09  Score=67.09  Aligned_cols=66  Identities=36%  Similarity=0.544  Sum_probs=46.8

Q ss_pred             cEEEEEeCCEEEE---ecccc-----cC---CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILT---AGSTK-----VT---PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~---~~~~~-----~~---~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ..|.|+|++..+.   .+...     ..   -.+|+.+..+++|+|.+++.+|+|.|+|++.+.. .....+.|.|..
T Consensus        29 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  106 (193)
T 2if7_A           29 NFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR  106 (193)
T ss_dssp             CEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEc
Confidence            5899999765442   11110     00   1258888888999999999999999999999764 344567777753

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.08  E-value=5.2e-10  Score=67.67  Aligned_cols=64  Identities=23%  Similarity=0.424  Sum_probs=50.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEcc-CCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITD-LQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~-v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+.       .++|+.+.   ...+|.|.+ ++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus       128 ~~g~p~--p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          128 FSGKPD--PVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEEESC--CEEEEEESSCEEC-------SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEecCC--CcEEEEECCEEee-------cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            345554  4899999887774       35677765   457999999 9999999999999987 477788888875

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.08  E-value=7e-10  Score=66.81  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=49.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      +.|.|.  +.+.|+|++..+..     ..+.|+.+..+.+|.|.+++.+|+|.|+|.+.+.. .......+.|
T Consensus       124 ~~g~p~--~~v~W~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          124 VVSSLP--PTIIWKHKGRDVIL-----KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EECSSC--CEEEEEETTEEGGG-----GCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             ECCCCC--CEEEEEECCEEeec-----cCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            345554  47999999877643     24578988888899999999999999999999864 4444444444

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.08  E-value=6e-10  Score=67.98  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             CcEEEEEe-CCEEEEecccccCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      .+.|.|+| +.....       ..+|+.+..      +.+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.+
T Consensus        36 ~~~v~W~k~~~~~~~-------~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~  103 (202)
T 3bp6_B           36 GIRASLQKVENDTSL-------QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA  103 (202)
T ss_dssp             TEEEEEEECC--CCC-------BCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             ceEEEEEcCCCcccc-------cCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecC
Confidence            37899999 444332       346777653      3899999999999999999999864 457778887764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.07  E-value=6.8e-10  Score=69.40  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=40.9

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCceEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT   72 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~   72 (78)
                      +.+.|.|+|++..|..       ++|+.+.     ...+|.|.+++.+|+|.|+|++.| +..+..+.
T Consensus        31 P~p~i~W~kng~~l~~-------~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N-g~a~~~~~   90 (207)
T 3rbs_A           31 GNAKVNYIFNEKEIFE-------GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHST   90 (207)
T ss_dssp             SCCEEEEEETTEEECS-------SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE-TTEEEEEE
T ss_pred             CCCEEEEEECCEECcc-------CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC-CCeEEEEE
Confidence            4578999999998853       4566554     123799999999999999999988 43333333

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.07  E-value=5e-10  Score=67.78  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=48.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      ++|.+...+.+.|+|++..+..        .+... .+.+|.|.+++.+|+|.|+|.+.+....+..+.|.|..
T Consensus        27 ~~~~~~~~~~v~W~~~~~~~~~--------~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~   91 (190)
T 2wv3_A           27 LTSSSHTLMYSYWTKNGVELTA--------TRKNA-SNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKA   91 (190)
T ss_dssp             EEECSSCEEEEEEEETTEECTT--------CCBCC-SEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCceEEEEEECCEECcc--------cceEe-ccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEec
Confidence            3455544478999999877642        22212 66899999999999999999999875566777777753

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.06  E-value=1.1e-09  Score=63.55  Aligned_cols=45  Identities=22%  Similarity=0.474  Sum_probs=36.8

Q ss_pred             CCEEEEc--CeEEEEccCCCCCCEEEEEEeeccC-C-----ceEEEEEEEEeC
Q psy14103         34 KRIQLVD--GYNLQITDLQTTDAGSYQCQIGTLE-P-----KEITHTLEILGF   78 (78)
Q Consensus        34 ~R~~~~~--~~sL~I~~v~~~D~G~Y~C~~~~~~-~-----~~~~~~L~V~g~   78 (78)
                      +|+.+..  +.+|+|.+++.+|+|.|.|.+.+.. .     ....+.|.|.|.
T Consensus        82 ~R~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g~  134 (135)
T 1xt5_A           82 GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  134 (135)
T ss_dssp             TTEEESCTTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEETT
T ss_pred             CcEEEecCCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEecC
Confidence            7998753  5899999999999999999999742 2     338888888874

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.06  E-value=1.1e-09  Score=67.29  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=47.5

Q ss_pred             CcEEEEEeCCEEEEe-cccc-------cCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTA-GSTK-------VTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~-~~~~-------~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      .+.|.|+|+...+.. ....       ....+|+.+..      +.+|.|.+++.+|+|.|+|++.+.+..+..+.|.|.
T Consensus        35 ~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~  114 (222)
T 3sbw_C           35 ALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVN  114 (222)
T ss_dssp             TCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEE
T ss_pred             cEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEE
Confidence            468999997643321 1110       11247887763      469999999999999999999986566677888876


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      .
T Consensus       115 ~  115 (222)
T 3sbw_C          115 A  115 (222)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.06  E-value=5.9e-10  Score=64.68  Aligned_cols=67  Identities=25%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             CcEEEEEeCC-----E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGI-----A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~-----~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      ...|.|+|+.     . ++...... ....+||++.   ..++|+|.+++.+|+|.|.|.+.+..   .......|.|.+
T Consensus        30 ~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~fg~gt~L~V~~  109 (120)
T 1mqk_L           30 YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEIKR  109 (120)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSSCCBCCCEEEEEC-
T ss_pred             CceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeCCCceEECCCeEEEEec
Confidence            4679999831     2 33332211 1236899886   45799999999999999999998753   223455676654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.06  E-value=9.5e-10  Score=67.89  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=51.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+..+     ...|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        42 ~~g~p~--p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  111 (215)
T 3mtr_A           42 VFAYPS--ATISWFRDGQLLPSS-----NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA  111 (215)
T ss_dssp             EEEESC--CEEEEEETTEESSCS-----SSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EeecCC--CEEEEEECCeECCCC-----CCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEEC
Confidence            455555  489999998877532     23677775   3689999999999999999999987 466677777764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.05  E-value=4.8e-10  Score=67.55  Aligned_cols=63  Identities=22%  Similarity=0.368  Sum_probs=48.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|..  .+.|+|++..+.       ...|+.+..+   .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus       127 ~~g~p~~--~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          127 VTGIPTP--VVKFYRDGAEIQ-------SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEESCC--EEEEEETTEECC-------CSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEecCC--eEEEEECCEECC-------CCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            3455554  699999988774       3567776532   38999999999999999999986 46677777776

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.05  E-value=1.4e-09  Score=71.70  Aligned_cols=70  Identities=27%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             EeccCCCCcEEEEEeC--CEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRG--IAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|+  +..+..+..  ..++|+.+.   .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus        24 ~~g~p~--p~v~W~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   99 (389)
T 2jll_A           24 AEGEPI--PEITWKRAVDGFTFTEGDK--SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY   99 (389)
T ss_dssp             EECSSC--CEEEEEETTTTEEECC--C--CSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             eecccC--CeEEEEeCCCCceeccCcC--CCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEe
Confidence            455554  58999998  777754321  236889876   4679999999999999999999986 5667888888763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.04  E-value=1.8e-09  Score=64.86  Aligned_cols=63  Identities=19%  Similarity=0.260  Sum_probs=47.9

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCe---EEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGY---NLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~---sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +|.|.  +.+.|+|++..+.       ...|+.+..++   +|.|.+++.+|+|.|+|.+.+. +..+..+.|.|.
T Consensus        32 ~~~p~--~~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~   98 (197)
T 3lcy_A           32 VGRPL--PDIKWYRFGKELI-------QSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ   98 (197)
T ss_dssp             EEESC--CEEEEEETTEEEC-------CCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCC--CEEEEEECCEECC-------CCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEE
Confidence            44443  4899999887774       35778776433   8999999999999999999975 455666777765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.04  E-value=5.9e-10  Score=67.01  Aligned_cols=62  Identities=21%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             CcEEEEEe----CCEEEEecccccCCCCCEEEEc---CeEEEEccCC-CCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKR----GIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQ-TTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k----~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|    +...+..     ..++||.+..   ...|.|.+++ .+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus       113 ~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          113 VTDWAWYKITDSEDKALMN-----GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             CCEEEEEECCSSSCEECCT-----TGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCeEEEEEcCCCCCEEeec-----CCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            36899999    4444432     1347888763   3589999999 99999999999987 4777788888875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=7.6e-10  Score=74.08  Aligned_cols=63  Identities=13%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|.|.|++..+....   ..+.|+.+ .+++|.|.+|+.+|+|.|+|.+.+. +..+..++|.|.+
T Consensus       274 ~p~i~W~~~~~~~~~~~---~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  337 (361)
T 2xot_A          274 GMTKVWVSPSNEQVLSQ---GSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYN  337 (361)
T ss_dssp             TCEEEEECTTSCBCCSC---CSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEES
T ss_pred             CCeEEEEeCCCeeEeec---ccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEe
Confidence            35789999543322111   23468988 7889999999999999999999987 4777888888864

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.03  E-value=1.4e-09  Score=71.78  Aligned_cols=64  Identities=27%  Similarity=0.420  Sum_probs=51.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..+.       ...|+.+. +.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|++
T Consensus       318 ~~g~p~--p~v~W~~~g~~~~-------~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~a  382 (382)
T 1cs6_A          318 ASGKPR--PAVRWLRDGQPLA-------SQNRIEVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA  382 (382)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeeecC--CEEEEEECCEECC-------CCceEEEE-CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEeC
Confidence            455555  4799999988774       34688765 469999999999999999999987 4778889998874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.03  E-value=7.8e-10  Score=73.14  Aligned_cols=66  Identities=26%  Similarity=0.434  Sum_probs=53.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|..  .|.|+|++..+.       ...++.+..+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.++
T Consensus       336 ~~g~p~p--~v~W~~~g~~~~-------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          336 VSGKPVP--TVNWMKNGDVVI-------PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEESCC--EEEEEETTEECC-------CSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             EeeccCC--EEEEEECCEECC-------CCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            4555554  799999987763       457788888889999999999999999999987 47788888888653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.03  E-value=1.1e-09  Score=67.18  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=43.7

Q ss_pred             CcEEEEEeCCEEEEecccc-cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGIAILTAGSTK-VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~-~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.+.|+|++..+...... .....|+.+..+.+|.|.+++.+|+|.|+|.+.|..
T Consensus       138 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  193 (217)
T 2vr9_A          138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV  193 (217)
T ss_dssp             CCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETT
T ss_pred             CCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEccc
Confidence            3579999998887643221 235678888888899999999999999999999863

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.03  E-value=1.1e-09  Score=69.62  Aligned_cols=60  Identities=17%  Similarity=0.383  Sum_probs=48.0

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+.       ...|+.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       223 ~p~v~W~~~g~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  284 (291)
T 2wim_A          223 EPAISWFRNGKLIE-------ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  284 (291)
T ss_dssp             CCEEEEEETTEECC-------CTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             CCeEEEEECCEECc-------CCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence            34799999988774       34677665 4678999999999999999999987 4778888887753

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.03  E-value=8.1e-10  Score=66.43  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=50.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V~g   77 (78)
                      +.|.|.  +.+.|+|++..+.       ...|+.+..+.+|.|.+++.+|+|.|+|.+.|.. .. +..+.|.|..
T Consensus       124 ~~g~p~--~~v~W~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          124 TMGNPK--PSVSWIKGDSALR-------ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EeccCC--ceEEEEeCCEEcc-------CCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            345554  4799999987764       3568888888899999999999999999999863 22 4467777754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.03  E-value=1.4e-09  Score=66.22  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             CCcEEEEEeCCEEEE-eccccc----CCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILT-AGSTKV----TPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~-~~~~~~----~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +...|.|+|+...+. ......    .-.+|+.+. .+++|+|.+++.+|+|.|+|++.+... +..+.|.|..
T Consensus        22 ~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~   94 (171)
T 1ccz_A           22 PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLE   94 (171)
T ss_dssp             CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEEC
T ss_pred             CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEEC
Confidence            456899999765432 111100    123588775 779999999999999999999987544 7788888864

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.02  E-value=1.5e-09  Score=68.91  Aligned_cols=63  Identities=17%  Similarity=0.457  Sum_probs=49.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .|.|.  +.+.|+|++..+..       ..|+.+..   ..+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.
T Consensus       217 ~g~p~--~~v~W~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          217 QGTPP--FQVSWHKDKRELRS-------GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             BSSSC--CEEEEEETTEEECB-------TTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EecCC--CEEEEEECCEECcC-------CCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            44444  68999999888753       46777653   268999999999999999999987 477778888774

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.02  E-value=5.3e-09  Score=59.04  Aligned_cols=53  Identities=28%  Similarity=0.458  Sum_probs=37.4

Q ss_pred             EEEEEeCCE--E-E-Eecccc-----cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         13 VLAWKRGIA--I-L-TAGSTK-----VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        13 ~v~W~k~~~--~-l-~~~~~~-----~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .|.|+|+..  + + ..+...     ..-.+|+.+. ++++|+|.+|+.+|+|.|+|.+.+..
T Consensus        30 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~   92 (110)
T 1ncn_A           30 VVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             EEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             EEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCEEEEEEEEcCC
Confidence            699999542  2 2 222111     1124688776 57899999999999999999999764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.01  E-value=5e-09  Score=64.36  Aligned_cols=66  Identities=20%  Similarity=0.351  Sum_probs=50.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--cC--eEEEEccCCC-CCCEEEEEEeeccC-C-ceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--DG--YNLQITDLQT-TDAGSYQCQIGTLE-P-KEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~~--~sL~I~~v~~-~D~G~Y~C~~~~~~-~-~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+..      ...|+.+.  .+  .+|.|.+++. +|+|.|+|.+.+.. . .+..+.|.|.
T Consensus        30 ~~g~p~--~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~  101 (212)
T 2yd1_A           30 ARGDPP--PSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY  101 (212)
T ss_dssp             EECSSC--CEEEEEETTEECCT------TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             EccCCC--CeEEEEECCEECCC------CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEe
Confidence            344444  48999999877642      46788765  22  6899999999 99999999999864 4 6778888876


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      .
T Consensus       102 ~  102 (212)
T 2yd1_A          102 E  102 (212)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.01  E-value=1.4e-09  Score=66.89  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cce-EEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKE-ITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~-~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..+..      ...|+.+. +++|.|.+++.+|+|.|+|.+.|.. ..+ ..+.|.|.+
T Consensus       134 ~~g~p~--p~i~W~~~~~~~~~------~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          134 AIGNPT--PNIYWIKNQTKVDM------SNPRYSLK-DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             EECSSC--CEEEEEETTEECCT------TSTTEEEE-TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eccCCC--CeEEEEECCeEccc------CCCeEEcc-CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            345554  47999999887753      34677554 5699999999999999999999874 333 347888864

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.01  E-value=1.8e-09  Score=71.23  Aligned_cols=61  Identities=23%  Similarity=0.473  Sum_probs=48.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|..  .|.|+|++..+.        .+|+.+.+. +|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus       333 ~~g~p~p--~v~W~~~g~~~~--------~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          333 VTGLPAP--NVVWSHNAKPLS--------GGRATVTDS-GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEESCC--CCEEEETTEECC--------SSSEEEETT-EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECcccCC--eeEEEECCEECC--------CCceEEECC-EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            4566655  589999988763        358877654 9999999999999999999987 46777777776

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.01  E-value=2.5e-09  Score=64.61  Aligned_cols=60  Identities=22%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE--cC--eEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV--DG--YNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~~--~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      .+.+.|+|++..+..      ...|+.+.  .+  .+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.
T Consensus        33 ~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~   97 (197)
T 2j8h_A           33 KPIVKWYRQGKEIIA------DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE   97 (197)
T ss_dssp             CCEEEEEETTEECCC------CSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEECCEECcc------CCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEc
Confidence            368999998877653      34677664  22  499999999999999999999763 55677777775

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.00  E-value=3.2e-11  Score=69.51  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=49.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----c---CeEEEEccCCCCCC-EEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----D---GYNLQITDLQTTDA-GSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~---~~sL~I~~v~~~D~-G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      +.|.|.+ ..|.|+|++..+..+     .+.||.+.    .   ..+|.|.+++.+|+ |.|+|.+.|. +..+..+.|.
T Consensus        37 ~~g~P~p-~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~  110 (122)
T 2cry_A           37 IRSTPPP-DRIAWSWKENVLESG-----TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK  110 (122)
T ss_dssp             ECCSSCC-SEEEEESSSCEECSE-----EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCC
T ss_pred             EeecCCC-cEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEE
Confidence            4456654 238999988776431     24788773    2   34899999999999 9999999987 5667777777


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |.+
T Consensus       111 V~~  113 (122)
T 2cry_A          111 EQG  113 (122)
T ss_dssp             CSC
T ss_pred             ECC
Confidence            653

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.00  E-value=9.4e-10  Score=62.90  Aligned_cols=67  Identities=27%  Similarity=0.333  Sum_probs=43.5

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      ...|.|+|+     .. ++...... ....+||++.   ..++|+|.+++.+|+|.|.|.+.+....  ..-..|.|.|
T Consensus        36 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~V~~  114 (114)
T 1eeq_A           36 KNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSHPYSFGQGTKLEIKR  114 (114)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccCEEEEEEEeeCCeEEECCCEEEEEeC
Confidence            367999983     12 33322211 1236899876   4578999999999999999999875321  2344555543

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.00  E-value=3.4e-09  Score=61.40  Aligned_cols=67  Identities=22%  Similarity=0.228  Sum_probs=43.4

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      ...|.|+|+     .. ++...... ...++||++.   ..++|+|.+++.+|+|.|+|.+.+....  ..-..|.|.+
T Consensus        32 ~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~v~~  110 (119)
T 2e27_L           32 KKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDNFTWTFGGGTKLEIKR  110 (119)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGGGCCEECCCEEEEEEC
T ss_pred             CceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEeC
Confidence            467999983     13 33322211 1236899875   4579999999999999999999875321  2334555543

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=61.08  Aligned_cols=64  Identities=17%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             cEEEEEeCC-----E-EEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc--C---CceEEEEEEE
Q psy14103         12 YVLAWKRGI-----A-ILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL--E---PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~-----~-~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~--~---~~~~~~~L~V   75 (78)
                      ..+.|+|+.     . ++..........+||++.     ..++|+|.+++.+|+|.|.|.+.+.  +   .....++|.|
T Consensus        27 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V  106 (110)
T 2q87_A           27 LNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSV  106 (110)
T ss_dssp             SEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEE
T ss_pred             ceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEE
Confidence            589999842     1 232211111146899886     2479999999999999999999976  2   2345555554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.00  E-value=1.6e-09  Score=66.68  Aligned_cols=68  Identities=24%  Similarity=0.378  Sum_probs=48.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..+....    ...|+...   ....|.|.+++.+|+|.|+|.+.|..  ..+..+.|.|..
T Consensus       132 ~~g~p~--p~v~W~~~g~~l~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          132 ASGNPD--PEITWFKDFLPVDTSN----NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             EECSSC--CEEEEEETTEEC----------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ecCCCC--CeEEEEECCccccCcC----CCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence            355554  4799999988775421    24677765   34899999999999999999999873  345667777654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.99  E-value=1.8e-09  Score=61.27  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=38.3

Q ss_pred             CcEEEEEeCC-----E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI-----A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~-----~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|+.     . ++...... ...++||++.   .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        32 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           32 SNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            4679999832     2 33322211 1236899876   4579999999999999999999874

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.99  E-value=6e-10  Score=69.06  Aligned_cols=72  Identities=11%  Similarity=0.100  Sum_probs=46.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc--ccCCCCC----EEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST--KVTPDKR----IQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~--~~~~~~R----~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.+...+.|.|+|++..+.....  ......+    ..  ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus       129 ~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          129 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK--FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             EEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE--EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EECCCCCceEEEEEecCCccceEEEeccccccccCcccee--eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEe
Confidence            4455555568999986543211000  0000011    21  2358999999999999999999987 467888899887


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      .
T Consensus       207 ~  207 (213)
T 2x1w_L          207 E  207 (213)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.98  E-value=1e-09  Score=64.99  Aligned_cols=60  Identities=28%  Similarity=0.418  Sum_probs=42.4

Q ss_pred             cEEEEEeC--C---EEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-----CceEEEEEEEEe
Q psy14103         12 YVLAWKRG--I---AILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-----PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~--~---~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-----~~~~~~~L~V~g   77 (78)
                      ..|.|+|+  +   ..+.      ..++||.+.   ...+|+|.+++.+|+|.|+|.+.+..     .....+.|.|.+
T Consensus        45 ~~v~W~r~~~g~~~~~l~------~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~  117 (133)
T 3khq_A           45 GALTWFRKRGSQQPQELV------SEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLG  117 (133)
T ss_dssp             SCEEEEEECTTSCCEECC------CTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-
T ss_pred             CEEEEEEeCCCCCCEEEE------EeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEe
Confidence            67999984  2   2221      246899876   34679999999999999999999753     124456777754

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.98  E-value=4.6e-10  Score=69.87  Aligned_cols=67  Identities=15%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccC-CCCCCEEEEEEeeccCC--ceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDL-QTTDAGSYQCQIGTLEP--KEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v-~~~D~G~Y~C~~~~~~~--~~~~~~L~V   75 (78)
                      +.|...+.+.|.|+|++..+...     .+.+.....+++|.|.+| +.+|+|.|+|.+.|...  .+....|.|
T Consensus       133 L~C~g~p~p~i~W~k~~~~l~~~-----~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          133 LTCPQYPGSEILWQHNDKNIGGD-----EDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             EECSCCCSSCEEEEETTEEESCC-----TTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             EEcCCCCCCceEEEECCEECCCc-----cCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            34443344579999998877532     123333335789999999 99999999999998743  355555554

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.98  E-value=3.6e-09  Score=60.33  Aligned_cols=67  Identities=24%  Similarity=0.321  Sum_probs=43.8

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      ...|.|+|.     .. ++...... ....+||++.   .+.+|+|.+++.+|+|.|.|.+.+....  .....|.|.|
T Consensus        35 ~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~l~V~~  113 (113)
T 1dlf_L           35 NTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEIKR  113 (113)
T ss_dssp             CBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHCEEEEEEEecCCCcEECCCEEEEEcC
Confidence            467999872     12 33322211 1236899876   4578999999999999999999875322  2344555543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.98  E-value=4.9e-09  Score=62.96  Aligned_cols=64  Identities=22%  Similarity=0.405  Sum_probs=48.1

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc-CeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      +|.|.  +.+.|+|++..+..      .+.|+.+.. ..+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus        32 ~~~p~--~~i~W~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   98 (192)
T 2iep_A           32 ESYPQ--PEISWTRNKILIKL------FDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK   98 (192)
T ss_dssp             EEESC--CEEEEEETTEECCT------TCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             CCCCC--CeEEEEECCEEccc------cCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE
Confidence            44444  48999998877642      467898874 4579999999999999999999763  34566666664

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.98  E-value=2.2e-09  Score=64.57  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=44.6

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEeC
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILGF   78 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g~   78 (78)
                      +.+.|+|++..+..            ...+..|.|.+++.+|+|.|+|.+.|..  ..+..+.|.|.|+
T Consensus       119 ~~~~W~k~g~~~~~------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          119 HKVTYLQNGKDRKY------------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEEEEEETTEEEEE------------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             eEEEEEECCeEccC------------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            58999999887642            1245789999999999999999999853  5677888888875

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.98  E-value=1.6e-09  Score=63.23  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             CCcEEEEEeCCE------EEEecccc----cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccC----CceEE
Q psy14103         10 KNYVLAWKRGIA------ILTAGSTK----VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLE----PKEIT   70 (78)
Q Consensus        10 ~~~~v~W~k~~~------~l~~~~~~----~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~   70 (78)
                      ....|.|+|+..      ++......    ....+||++..     +.+|+|.+|+.+|+|.|.|.+.+..    .....
T Consensus        41 ~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~  120 (132)
T 1nko_A           41 DPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQ  120 (132)
T ss_dssp             SCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEECTTSC
T ss_pred             CccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEEcccCcccCeeEEEEEEcCCCcccccCCc
Confidence            457899998431      34332210    12358999863     4699999999999999999998754    11235


Q ss_pred             EEEEEEe
Q psy14103         71 HTLEILG   77 (78)
Q Consensus        71 ~~L~V~g   77 (78)
                      ..|.|.+
T Consensus       121 ~~l~V~~  127 (132)
T 1nko_A          121 LSVNVTA  127 (132)
T ss_dssp             EEEEEEC
T ss_pred             eEEEecc
Confidence            6666654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.97  E-value=5.1e-09  Score=62.96  Aligned_cols=60  Identities=27%  Similarity=0.469  Sum_probs=46.5

Q ss_pred             CcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      .+.+.|+| ++..+..      ...|+.+.    ...+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus        32 ~~~v~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   98 (191)
T 1epf_A           32 DKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   98 (191)
T ss_dssp             CCEEEEECTTSCEECC------BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             CceEEEEeCCCccccC------CCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEee
Confidence            57899999 7776643      35788775    45899999999999999999999864  44566666664

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.97  E-value=9.8e-09  Score=59.88  Aligned_cols=65  Identities=17%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             cEEEEEeC---C---EEEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         12 YVLAWKRG---I---AILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~---~---~~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ..+.|+|.   .   .++...+. .....+||++.     ..++|+|.+++.+|+|.|.|.+...+  .....+.|++.
T Consensus        42 ~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~~~~~~~~~~l~L~  120 (122)
T 1hkf_A           42 EKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV  120 (122)
T ss_dssp             CEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEE
T ss_pred             cEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCcccccEEEEEE
Confidence            58999983   2   34443322 23456899884     45899999999999999999999753  44455555443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.96  E-value=1.9e-09  Score=69.77  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=46.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.+ ..|.|+|++..+..         . ....+.+|.|.+++.+|+|.|+|.|.|. +..+..++|.|.
T Consensus       241 ~~g~P~p-~~v~W~~~~~~l~~---------~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          241 ARSNPEP-TGYNWSTTMGPLPP---------F-AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             EEEESCC-CEEEEEETTBSCCT---------T-EEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCCCC-cEEEEEECCEECCC---------c-eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            3455443 35899998765531         2 2335579999999999999999999987 577788888886

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.96  E-value=7e-09  Score=65.78  Aligned_cols=64  Identities=16%  Similarity=0.384  Sum_probs=48.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +|.|  .+.|.|+|++..+.       ...|+.+.   ...+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus        30 ~g~p--~~~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~   97 (284)
T 2rik_A           30 TGTA--PIKITWAKDNREIR-------PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE   97 (284)
T ss_dssp             ESSS--CCEEEEEETTEECC-------SSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EcCC--CCEEEEEECCEECc-------CCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccC
Confidence            4444  35899999987764       34566543   4589999999999999999999976 3567777887754

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.96  E-value=2e-09  Score=61.30  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             CcEEEEEeCC-----E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI-----A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~-----~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|..     . ++...... ....+||++.   ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        33 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           33 GTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            4579999831     3 33332211 1236899876   4578999999999999999999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.96  E-value=2.4e-09  Score=65.27  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      .+.|.|+|++..+.       .++|+.+.   ...+|.|.+++.+|+|.|+|.+.+.. ..+..+.|
T Consensus        32 ~~~i~W~~~g~~i~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l   91 (212)
T 2r15_A           32 DLKVNWSHNGSAIR-------YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL   91 (212)
T ss_dssp             SCEEEEEETTEECC-------CCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CceEEEEECCEEcc-------CCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEE
Confidence            57899999987774       34677665   33569999999999999999999853 33444444

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=2.5e-10  Score=63.18  Aligned_cols=54  Identities=15%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C--CceEEEEEEEEeC
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E--PKEITHTLEILGF   78 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~--~~~~~~~L~V~g~   78 (78)
                      +.|.|+|++..+..       .      .+.+|.|.+++.+|+|.|+|.+.+. .  ..+..+.|.|.++
T Consensus        40 ~~v~W~k~~~~~~~-------~------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~~~   96 (96)
T 2ens_A           40 PQIHWMKDGVPLPL-------P------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP   96 (96)
T ss_dssp             CCCCCEESSSBCSS-------C------CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEECCC
T ss_pred             CEEEEEECCEECcC-------C------CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            47899997765532       1      3569999999999999999999984 3  3456677777653

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.95  E-value=1.1e-08  Score=58.43  Aligned_cols=66  Identities=21%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             CcEEEEEeCC--------EEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEE
Q psy14103         11 NYVLAWKRGI--------AILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHT   72 (78)
Q Consensus        11 ~~~v~W~k~~--------~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~   72 (78)
                      ...+.|+|..        .++.....  ....++||.+.     .+.+|+|.+++.+|+|.|.|.+...+   .....++
T Consensus        27 ~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~v~  106 (116)
T 3bia_X           27 RNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVR  106 (116)
T ss_dssp             TCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECSSSSCCEEEEEE
T ss_pred             eEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcCCcccceEEEEE
Confidence            4579999843        23433221  12346788875     46799999999999999999998643   2356677


Q ss_pred             EEEE
Q psy14103         73 LEIL   76 (78)
Q Consensus        73 L~V~   76 (78)
                      |.|.
T Consensus       107 L~V~  110 (116)
T 3bia_X          107 LELR  110 (116)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7775

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.95  E-value=4.7e-09  Score=61.58  Aligned_cols=67  Identities=18%  Similarity=0.424  Sum_probs=44.7

Q ss_pred             CcEEEEEe---C--C-EEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-Cc----eEEEE
Q psy14103         11 NYVLAWKR---G--I-AILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PK----EITHT   72 (78)
Q Consensus        11 ~~~v~W~k---~--~-~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~----~~~~~   72 (78)
                      ...+.|+|   +  . .++.....  .....+||++.     ..++|+|.+++.+|+|.|.|.+.+.. ..    +..+.
T Consensus        31 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~  110 (129)
T 3rrq_A           31 SFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAE  110 (129)
T ss_dssp             CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEE
T ss_pred             CcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEE
Confidence            46899987   2  1 23333221  11235799886     35899999999999999999999753 33    45678


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|..
T Consensus       111 L~V~~  115 (129)
T 3rrq_A          111 LRVTE  115 (129)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.95  E-value=1.9e-09  Score=67.19  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---------------c--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---------------K--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---------------~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.|.+  .|.|+|++..+.....               .  ..-..+.......+|.|.+++.+|+|.|+|.+.|.
T Consensus       160 ~~g~p~p--~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~  235 (250)
T 2fbo_J          160 CTDCANA--NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG  235 (250)
T ss_dssp             EESCTTC--EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             ecCCCCC--eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCC
Confidence            3454544  8999997665532110               0  01124444446689999999999999999999984

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.95  E-value=1.9e-09  Score=62.31  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=27.6

Q ss_pred             CeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +.+|.|.+++.+|+|.|+|.+.+.+  ..+..+.|.|
T Consensus        92 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           92 DATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence            3499999999999999999988654  4556666654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.94  E-value=8e-09  Score=64.63  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCcEEEEEeCC----EEE--Eecccc----cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         10 KNYVLAWKRGI----AIL--TAGSTK----VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~----~~l--~~~~~~----~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      +.+.|.|+|++    ..+  ......    .....|+.+.   +.++|.|.+++.+|+|.|+|++.+.. ..+..+.|.|
T Consensus        24 p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  103 (203)
T 4fa8_A           24 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV  103 (203)
T ss_dssp             TTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEe
Confidence            45799999842    111  111111    1234566554   56899999999999999999999864 6667777877


Q ss_pred             E
Q psy14103         76 L   76 (78)
Q Consensus        76 ~   76 (78)
                      .
T Consensus       104 ~  104 (203)
T 4fa8_A          104 V  104 (203)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.94  E-value=3.7e-09  Score=59.84  Aligned_cols=54  Identities=19%  Similarity=0.349  Sum_probs=37.8

Q ss_pred             CcEEEEEeCC-----EEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI-----AIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|+.     ..+ ...+.. ....+||++.   .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           30 DSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             CSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            4579999831     333 322111 1235799875   3578999999999999999999875

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.94  E-value=3.1e-09  Score=64.01  Aligned_cols=63  Identities=19%  Similarity=0.385  Sum_probs=46.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+..       ..++ ...+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus       137 ~~g~p~--p~v~W~~~~~~~~~-------~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          137 ALGNPV--PDIRWRKVLEPMPS-------TAEI-STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEESC--CEEEEEETTBCCCT-------TCEE-ETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCCC--CceEEEeCCCcCCC-------ceee-cCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            345544  58999998765531       2222 235679999999999999999999986 477788888875

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=98.94  E-value=1.2e-08  Score=58.39  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=44.9

Q ss_pred             CCcEEEEEeCC----EEEEecc-cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCce----EEEE
Q psy14103         10 KNYVLAWKRGI----AILTAGS-TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPKE----ITHT   72 (78)
Q Consensus        10 ~~~~v~W~k~~----~~l~~~~-~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~~   72 (78)
                      ....|.|+|..    .++.... ..   ....+||++.     .+.+|+|.+++.+|+|.|.|.+...+...    ....
T Consensus        34 ~~~~v~W~~~~~g~~~~v~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~~~~  113 (119)
T 1qfo_A           34 NGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTT  113 (119)
T ss_dssp             -CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC-CCEEECSSCEE
T ss_pred             CCeEEEEEEcCCCCCCEEEECCCCcccCccceeeEEEeCCCCCCEEEEEEccCCcccCceEEEEEEeCCCceecccCCeE
Confidence            34789999842    2343322 11   1235799886     34799999999999999999998753211    3467


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|.+
T Consensus       114 L~V~~  118 (119)
T 1qfo_A          114 VTVTT  118 (119)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            77764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.94  E-value=2.8e-09  Score=58.32  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=41.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      ++|.|.  +.+.|+|++..+...             ...+|.|.+++.+|+|.|+|.+.+...  .+..+.|.|.
T Consensus        27 ~~g~p~--p~i~W~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           27 AVGSPI--PHYQWFKNELPLTHE-------------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EECSSC--CEEEEEETTEECTTC-------------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             eccCCC--CEEEEEcCCeeCCcC-------------CCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEe
Confidence            345554  489999988766321             135899999999999999999998642  2344566553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.93  E-value=1.7e-09  Score=67.77  Aligned_cols=61  Identities=10%  Similarity=0.093  Sum_probs=38.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEE---ccCCCCCCEEEEEEeeccCCceE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQI---TDLQTTDAGSYQCQIGTLEPKEI   69 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I---~~v~~~D~G~Y~C~~~~~~~~~~   69 (78)
                      ++|.|.+  .|.|++++..+...   ...+.|+.+..+++|.|   .+++.+|+|.|+|.+.|......
T Consensus       130 ~~G~P~P--~v~W~~~~~~~~~~---~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          130 VNAFPHP--HVQWLMPEGVEPAP---TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             EEEESCC--EEEECCC---------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             cCCCCCC--EEEEEECCeeecCc---ccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            5677664  89998854333211   12467888887777655   58999999999999999754333

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.93  E-value=4.5e-09  Score=61.44  Aligned_cols=66  Identities=23%  Similarity=0.431  Sum_probs=46.2

Q ss_pred             cEEEEEeCC------EEEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         12 YVLAWKRGI------AILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~------~~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ..+.|+|..      .++..... .....+||++.     ...+|+|.+++.+|+|.|.|.+.... .....++|.|..
T Consensus        33 ~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~  111 (124)
T 2nms_A           33 YLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDP  111 (124)
T ss_dssp             SEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeC
Confidence            479999831      33433221 11246899886     34799999999999999999998754 445667777764

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.93  E-value=3e-09  Score=60.67  Aligned_cols=52  Identities=23%  Similarity=0.409  Sum_probs=38.1

Q ss_pred             eccCCCCcEEEEEeC--C----EEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          5 SGLPDKNYVLAWKRG--I----AILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~--~----~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++.+.+...|.|+|+  +    .++       ..++||.+.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        25 ~~~~~~~~~v~W~r~~~~~~~~~~~-------~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           25 KDHSCGLSSTTWYRTQLGSTNEKTI-------SIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             ESCSSCCCEEEEEEEETTCCCCEEC-------CSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEeCCCCCceEee-------EeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            443334578999983  1    122       235789764     357999999999999999999987

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.93  E-value=7.7e-09  Score=61.82  Aligned_cols=50  Identities=24%  Similarity=0.442  Sum_probs=38.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.+.|+|++..+..     ..+.|+.+..+.+|.|.+++.+|+|.|+|.+.+..
T Consensus        31 ~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A           31 APAVSWLYHNEEVTT-----ISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEEEC-----CB-----CCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEEECCcccee-----ccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            458999998765542     25689988888999999999999999999999763

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.93  E-value=2.3e-09  Score=62.32  Aligned_cols=67  Identities=22%  Similarity=0.268  Sum_probs=45.7

Q ss_pred             CcEEEEEeCC--EEEEeccc--c---cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGI--AILTAGST--K---VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~--~~l~~~~~--~---~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ...|.|+++.  .+......  .   ..-.+|+.+. .+++|+|.+++.+|+|.|+|++.+..  ..+....|.|..
T Consensus        34 ~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~v~~~~~~~~~~~~~L~V~~  110 (121)
T 2edo_A           34 YKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLD  110 (121)
T ss_dssp             EEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEEEEETTTEEEECCEECEEEC
T ss_pred             eeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEEEEcCCCcEEEEEEEEEEEC
Confidence            4579999853  23222111  1   1123577777 78999999999999999999998653  345666777754

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.93  E-value=5.9e-09  Score=62.77  Aligned_cols=55  Identities=16%  Similarity=0.332  Sum_probs=44.1

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEeC
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILGF   78 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g~   78 (78)
                      +.+.+.|+|++..+              .....+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.|+
T Consensus       125 p~~~v~W~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          125 SSPSVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF  180 (184)
T ss_dssp             CCCEEEEECTTSCE--------------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCEEEEEeCCCcc--------------ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence            45689999865322              2356799999999999999999999764 7788899999874

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.92  E-value=1.2e-08  Score=62.81  Aligned_cols=63  Identities=21%  Similarity=0.453  Sum_probs=46.4

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-----cCeEEEEccCC-CCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQ-TTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~-~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      .|.|.  +.|.|+|++..+.        ..|+...     ....|.|.+++ .+|+|.|+|.+.+.. ..+..+.|.|..
T Consensus        31 ~g~p~--~~v~W~k~~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (212)
T 2yd6_A           31 TGDPR--PKIVWNKKGKKVS--------NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLR  100 (212)
T ss_dssp             EEESC--CEEEEEETTEECC--------CTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeCCC--CEEEEEECCcCCC--------CCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEec
Confidence            45544  5899999987764        2444432     34679999995 999999999999863 556777787753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.92  E-value=2.2e-09  Score=65.39  Aligned_cols=58  Identities=26%  Similarity=0.449  Sum_probs=46.0

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      +.+.|+|++..+.       .+.|+.+. .+.+|.|.+++.+|+|.|+|.+.|..  ..+..++|.|.
T Consensus       139 p~i~W~~~g~~l~-------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          139 ANIQWLFNSQSLQ-------LTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             CEEEEEETTEECC-------CCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             CceEEEECCEeCC-------CCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            5899999988774       45788877 44899999999999999999999873  44556666553

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.92  E-value=3e-09  Score=61.95  Aligned_cols=67  Identities=25%  Similarity=0.373  Sum_probs=45.6

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      ...|.|+|.     .. ++...... ....+||++.   ...+|+|.+++.+|+|.|.|.+.+....  ..-..|.|.+
T Consensus        34 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           34 NSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCcEECCCEEEEEec
Confidence            457999982     23 33322211 1246899875   5689999999999999999999875322  3446677764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.92  E-value=3.1e-09  Score=64.47  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=47.2

Q ss_pred             cEEEEEeCCE-EEEecccc--cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEEe
Q psy14103         12 YVLAWKRGIA-ILTAGSTK--VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~-~l~~~~~~--~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~g   77 (78)
                      +.+.|+|++. .+......  .....++.+. ...+|.|.+++.+|+|.|+|.+.|. +..  +..++|.|.+
T Consensus       135 ~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          135 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             CEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             CEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            5899999887 66543221  1233567664 5789999999999999999999987 344  6677777754

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.91  E-value=3.7e-09  Score=59.75  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             CcEEEEEeCC-----E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGI-----A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~-----~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ...|.|+|+.     . ++...... ....+||++.   ..++|+|.+++.+|+|.|.|.+.+..
T Consensus        30 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (107)
T 1i8k_A           30 DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFNV   94 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeCC
Confidence            4579999831     2 33332211 1236799876   45789999999999999999998753

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.91  E-value=9e-09  Score=67.25  Aligned_cols=60  Identities=18%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc---CCc----eEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL---EPK----EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~---~~~----~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+..      ...||... +.+|.|.+++.+|+|.|+|.+.+.   +..    +..+.|.|..
T Consensus       158 ~~~i~W~k~~~~l~~------~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~  224 (329)
T 3oq3_B          158 YNNITWYKNNQELII------DGTKYSQS-GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIP  224 (329)
T ss_dssp             CCEEEEEETTEECCC------SSSSEEEE-TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEEC
T ss_pred             CceEEEEECCccCCC------CCceEecC-CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEEC
Confidence            468999999887742      35688766 689999999999999999999974   122    2336677753

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.91  E-value=6.3e-09  Score=62.57  Aligned_cols=65  Identities=18%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      +|.|.  +.+.|+|++..+...     ..+|+.+.   ...+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.
T Consensus        30 ~~~p~--~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           30 SGFPV--PEVSWFRDGQVISTS-----TLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK   98 (194)
T ss_dssp             EEESC--CEEEEEESSSBCCTT-----TSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EecCC--CEEEEEECCEEcccc-----cCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEc
Confidence            44443  479999987666432     22355443   35699999999999999999998763 55566677765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.91  E-value=2e-09  Score=66.47  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             EeccCCCCcEEEEEeC--CE-E--E-Eecc----c--ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRG--IA-I--L-TAGS----T--KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~-~--l-~~~~----~--~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.+...+.|.|+|+  +. +  + ....    .  .....+||.+..     +++|.|.+++.+|+|.|+|.+.+..
T Consensus        24 ~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           24 ASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTI  102 (219)
T ss_dssp             EESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccC
Confidence            4555544578999984  22 1  1 1110    0  011357998863     4799999999999999999999854

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.91  E-value=8.7e-09  Score=72.05  Aligned_cols=65  Identities=15%  Similarity=0.403  Sum_probs=50.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..+.       ...|+.+.   ....|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       315 ~~g~P~--p~v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  383 (570)
T 3b43_A          315 IGGSPE--IKVLWYKDETEIQ-------ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE  383 (570)
T ss_dssp             EESSSS--CEEEEEETTEECC-------CSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC
T ss_pred             EeeCCC--CEEEEeECCEECC-------CCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC
Confidence            456554  5899999988774       34566543   4578999999999999999999987 4778888888864

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.91  E-value=2.9e-09  Score=60.46  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=38.1

Q ss_pred             CcEEEEEeC---C--E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG---I--A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~---~--~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|+   .  . ++...... ....+||++.   .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        34 ~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           34 VGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCEEEEEEEecC
Confidence            467999983   1  2 33322211 1235799876   4579999999999999999999875

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.90  E-value=3.9e-09  Score=59.87  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             cEEEEEeCC---E-EEEecccc-cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGI---A-ILTAGSTK-VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~---~-~l~~~~~~-~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|+|+.   . ++...... ....+||++.     ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        32 ~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           32 NYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             SCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            679999853   2 22222111 1235899886     3579999999999999999999874

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.90  E-value=8.4e-09  Score=65.12  Aligned_cols=74  Identities=16%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             EeccCCCCcEEEEEeCC-----E-EEEeccc---cc---CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-
Q psy14103          4 LSGLPDKNYVLAWKRGI-----A-ILTAGST---KV---TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~-~l~~~~~---~~---~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-   65 (78)
                      +++.+.....|.|+|+.     . ++.....   ..   ..++||++.     .+++|+|.+++.+|+|.|.|.+.+.. 
T Consensus        25 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  104 (242)
T 1hxm_B           25 VSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQ  104 (242)
T ss_dssp             EESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECS
T ss_pred             eCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCc
Confidence            34433345789999821     2 2322210   01   146899886     36799999999999999999999753 


Q ss_pred             -C------ceEEEEEEEEe
Q psy14103         66 -P------KEITHTLEILG   77 (78)
Q Consensus        66 -~------~~~~~~L~V~g   77 (78)
                       .      ....+.|.|.+
T Consensus       105 ~~~~~~~~~~~~~~L~V~~  123 (242)
T 1hxm_B          105 ELGKKIKVFGPGTKLIITD  123 (242)
T ss_dssp             STTCEEEEECCCEEEEEES
T ss_pred             cccccceeEcCcEEEEEcc
Confidence             1      11245777764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.90  E-value=3.5e-09  Score=67.71  Aligned_cols=58  Identities=14%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEc---CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVD---GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE   74 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~   74 (78)
                      +.+.|.|+|++..+.       .++|+.+..   ..+|.|.+++.+|+|.|+|.+.+.........|.
T Consensus        30 p~~~v~W~k~~~~i~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~   90 (312)
T 2y23_A           30 PKSEFSWSKDYVSTE-------DSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLID   90 (312)
T ss_dssp             TTCCEEEEETTEECT-------TCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEEC
T ss_pred             CCcEEEEEECCEECC-------CCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEE
Confidence            456899999988764       457888763   3699999999999999999999864333344444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=1.8e-09  Score=71.32  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE----------EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL----------VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~----------~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~   72 (78)
                      +.|.|.  +.|.|+|++..+..+       .+...          ..+++|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus       270 ~~g~P~--p~i~W~~~g~~l~~~-------~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  340 (347)
T 2ifg_A          270 VDGQPA--PSLRWLFNGSVLNET-------SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM  340 (347)
T ss_dssp             EEEESC--CEEEEEETTEECCCC-------SSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eeecCC--CcEEEEeCCEECCCC-------cceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEE
Confidence            456655  489999998887532       12211          12578999999999999999999987 47778888


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|.+
T Consensus       341 l~V~~  345 (347)
T 2ifg_A          341 AAFMD  345 (347)
T ss_dssp             ECSCC
T ss_pred             EEecC
Confidence            87764

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.90  E-value=5.1e-10  Score=62.21  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=35.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccC-CCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDL-QTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v-~~~D~G~Y~C~~~~   63 (78)
                      +.+.-.+.+.|+|+|++..|..       +      .+.+|+|.+| +.+|+|.|+|.+.+
T Consensus        19 L~C~~~g~P~i~W~kdg~~l~~-------~------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           19 LTCPLDSDENLKWEKNGQELPQ-------K------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             EECSSCCCSSCEEEETTEECTT-------C------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             EEEECCCCCcEEEEECCEECcC-------C------CCCEEEECccCccCcCEEEEEEEcc
Confidence            3344444445999999887732       1      5579999996 78999999999976

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.89  E-value=4.6e-09  Score=63.83  Aligned_cols=60  Identities=28%  Similarity=0.462  Sum_probs=45.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V~g   77 (78)
                      .+.+.|+|++..+..      .+.|+.. .+.+|.|.+++.+|+|.|+|.+.|.. .. +..+.|.|..
T Consensus       141 ~~~v~W~~~~~~l~~------~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          141 EPTISWKKDGSPLDD------KDERITI-RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             CCEEEEEETTEEECT------TSTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCEEEEEECCccCCC------CcceEEc-cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            358999999888753      2456654 45799999999999999999999864 32 2347888764

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.89  E-value=2e-09  Score=61.08  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=35.8

Q ss_pred             CcEEEEEeC--CE---EEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG--IA---ILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~--~~---~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|+|+  +.   .+.      ..++||.+.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        31 ~~~v~W~r~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           31 LDSTNWYRTKLGSTKEQTI------SIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEEEEEEETTCCCEEEC------CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCcEEEE------EeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            468999984  11   121      245799764     467999999999999999999987

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.89  E-value=7.8e-09  Score=73.65  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=52.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..|.       ...||.+.   .+.+|.|.++..+|+|.|+|.+.|. +..+..+.|+|
T Consensus       506 v~g~P~--P~v~W~k~~~el~-------~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          506 VIASSP--PVVTWHKDDRELK-------QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             EECSSC--CEEEEEETTEECC-------SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEccCC--CeEEEEECCEEcc-------cCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEEE
Confidence            456665  5899999988874       45788775   5678999999999999999999997 58888888887

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.89  E-value=4e-09  Score=60.05  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             cEEEEEeCC-----E-EEEecccccCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGI-----A-ILTAGSTKVTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~-----~-~l~~~~~~~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..|.|+|+.     . ++..... ...++||.+..      +++|+|.+++.+|+|.|+|.+.+.
T Consensus        30 ~~v~W~r~~~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (113)
T 1h5b_A           30 RSVQWFRQNSRGSLISLFYLASG-TKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSS-EEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceEEEEEECCCCCeEEEEEECCC-CccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            579998731     2 2222211 12457888763      349999999999999999999975

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.89  E-value=7.8e-09  Score=62.89  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCCCcEEEEEeCC------EEEEecc--c----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103          8 PDKNYVLAWKRGI------AILTAGS--T----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL   73 (78)
Q Consensus         8 ~~~~~~v~W~k~~------~~l~~~~--~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L   73 (78)
                      +.....|.|+|+.      .+.....  .    .....+|+.+..+++|.|.+++.+|+|.|+|.+.+..  ..+..+.|
T Consensus        25 ~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l  104 (208)
T 3r4d_A           25 PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF  104 (208)
T ss_dssp             CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEE
Confidence            3445789999853      2222110  0    0123578988888999999999999999999999863  55667777


Q ss_pred             EEE
Q psy14103         74 EIL   76 (78)
Q Consensus        74 ~V~   76 (78)
                      .|.
T Consensus       105 ~V~  107 (208)
T 3r4d_A          105 HVH  107 (208)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            775

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.89  E-value=5.3e-09  Score=65.34  Aligned_cols=61  Identities=20%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+.+.|.|+|+.     ..+ .....      .....+||++..     +++|+|.+|+.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~  101 (223)
T 1dee_B           24 ASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKF  101 (223)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             ecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEecc
Confidence            45554445789999831     222 22110      012357998862     479999999999999999999875

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.89  E-value=1.1e-08  Score=61.73  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=43.2

Q ss_pred             CcEEEEEeCC-----EE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEE
Q psy14103         11 NYVLAWKRGI-----AI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~-----~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~   76 (78)
                      ...|.|+|+.     .. +...... ....+||++.   ..++|+|.+++.+|+|.|+|.+.+....  .....|.|.
T Consensus        45 ~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~  122 (146)
T 2yc1_B           45 RSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRYSPRTFGQGTKVEIK  122 (146)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCeECCCEEEEEe
Confidence            3579999831     33 3332211 1236899886   4578999999999999999999865321  223456554

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.88  E-value=9.2e-09  Score=60.21  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ...+.|+|.     .. ++...... ....+||++.   .+.+|+|.+++.+|+|.|.|.+.+..
T Consensus        31 ~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           31 DNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCLSWDDS   95 (123)
T ss_dssp             TSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHHCEEEEEEEEcCC
Confidence            467999982     23 33332221 1245899876   46899999999999999999998653

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.88  E-value=1.2e-08  Score=60.25  Aligned_cols=67  Identities=24%  Similarity=0.442  Sum_probs=45.5

Q ss_pred             CcEEEEEeC---C---EEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCc-----eEEEE
Q psy14103         11 NYVLAWKRG---I---AILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPK-----EITHT   72 (78)
Q Consensus        11 ~~~v~W~k~---~---~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~-----~~~~~   72 (78)
                      ...+.|+|.   .   .++.....  .....+||++.     ..++|+|.+++.+|+|.|.|.+......     ...+.
T Consensus        39 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~  118 (134)
T 3bik_B           39 DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAE  118 (134)
T ss_dssp             TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEE
T ss_pred             CcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEE
Confidence            368999982   1   23332221  12357899885     3579999999999999999999865321     23567


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|.+
T Consensus       119 L~V~~  123 (134)
T 3bik_B          119 LVVTE  123 (134)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.88  E-value=6.5e-09  Score=72.69  Aligned_cols=64  Identities=19%  Similarity=0.499  Sum_probs=49.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcC---eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDG---YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~---~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+.       ...|+.+..+   .+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus       408 ~~g~P~--p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  475 (570)
T 3b43_A          408 LQGTPP--FQVSWHKDKRELR-------SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK  475 (570)
T ss_dssp             EESSSS--CCCEEEETTEECC-------SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EecCCC--CEEEEEECCEECc-------CCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence            456665  4789999988774       3567876532   58999999999999999999987 566777777775

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.88  E-value=1.3e-08  Score=62.39  Aligned_cols=67  Identities=15%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.  ..|.|+|++..+..+.    ...++... .+.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus        44 ~~~p~--~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~  112 (231)
T 3ojm_B           44 GGNPM--PTMRWLKNGKEFKQEH----RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE  112 (231)
T ss_dssp             EEESC--CEEEEEETTEECCGGG----STTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCCC--CeEEEEECCccccccc----cccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEc
Confidence            44443  4799999988775432    11222333 6679999999999999999999976 3556777777753

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.87  E-value=9.6e-09  Score=65.71  Aligned_cols=64  Identities=22%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--c--CeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--D--GYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~--~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      .|.|.  +.|.|+|++..+..      ...|+.+.  .  ..+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.
T Consensus        29 ~g~p~--~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (305)
T 2nzi_A           29 TGHPK--PIVKWYRQGKEIIA------DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE   97 (305)
T ss_dssp             ECSSC--CEEEEEETTEECCC------CSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCCC--CeEEEEECCEEccc------CCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEe
Confidence            45443  68999998877643      34567654  2  3499999999999999999999863 55677777764

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.87  E-value=1.2e-08  Score=58.88  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             eccCCCCcEEEEEeC---C--E-EEEecc-c--c--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRG---I--A-ILTAGS-T--K--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~---~--~-~l~~~~-~--~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++.+.....|.|+|.   .  . ++.... .  .  ....+||++..     +++|+|.+++.+|+|.|.|.+.+.
T Consensus        25 ~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           25 SGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLR  100 (121)
T ss_dssp             ESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             cCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEec
Confidence            333334578999983   1  2 333221 1  0  11257998862     479999999999999999999864

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.87  E-value=1.3e-09  Score=69.61  Aligned_cols=71  Identities=13%  Similarity=0.199  Sum_probs=45.3

Q ss_pred             eccCCCCcEEEEEeCCEEE----EecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAIL----TAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l----~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.. ..|.|+|++..+    ...... ....++.......|.|.+++.+|+|.|+|.+.|. +..+..++|.|..
T Consensus       213 ~g~p~p-~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          213 KDVSTS-VNSMWLKMNPQPQHIAQVKHNS-WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EESSTT-CEEEEEEESSSEEECCCEECCE-EEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ecCCcc-eeEEEecCCCCCccceeecccc-cccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            445443 238999965442    211100 0012223345679999999999999999999987 5678888888765

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.86  E-value=2.5e-09  Score=67.97  Aligned_cols=70  Identities=14%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.+ ..+.+.|.+++..+...........++.  ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus       211 ~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          211 SSVD-VNFDVFLQHNNTKLAIPQQSDFHNNRYQ--KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             EESS-SCCEEECCBSSCCCCCCBEEEEETTEEE--EEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             cCCC-CceEEEEeCCCcccccCccceeccceee--eEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            3444 3467788887654432211111123332  3468999999999999999999987 5778888888865

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.86  E-value=9.9e-09  Score=63.97  Aligned_cols=73  Identities=14%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      ++|.+...+.|.|+|+.     ..+ .....      .....+||++..     +++|+|.+++.+|+|.|+|.+.+...
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           24 ASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYG  103 (220)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             ecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEecccc
Confidence            44544445789999831     222 22110      012357999873     47999999999999999999997532


Q ss_pred             c----eEEEEEEEE
Q psy14103         67 K----EITHTLEIL   76 (78)
Q Consensus        67 ~----~~~~~L~V~   76 (78)
                      .    ...+.|.|.
T Consensus       104 ~~~~~~~~~~L~V~  117 (220)
T 2fbj_H          104 YNAYWGQGTLVTVS  117 (220)
T ss_dssp             EEEEECCCEEEEEC
T ss_pred             ccceecCCEEEEec
Confidence            1    223466664

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.86  E-value=8e-09  Score=63.34  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             CCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC------CceEEEEEEEE
Q psy14103         32 PDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE------PKEITHTLEIL   76 (78)
Q Consensus        32 ~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~------~~~~~~~L~V~   76 (78)
                      ..+||.+.   .+++|.|.+|+.+|+|.|+|.+.+..      .....+.|.|.
T Consensus        62 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~  115 (218)
T 3s96_B           62 IPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVL  115 (218)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEE
T ss_pred             cccceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEe
Confidence            34699875   46889999999999999999998753      22334566665

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.86  E-value=1.2e-08  Score=57.94  Aligned_cols=68  Identities=19%  Similarity=0.318  Sum_probs=43.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEc-----cCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQIT-----DLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~-----~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+......  ...++....++++.+.     +++.+|+|.|+|.+.|..  ..+..++|.|
T Consensus        33 ~~g~P~--p~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~  107 (117)
T 2v9t_A           33 AEGRPT--PTIEWYKGGERVETDKDD--PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV  107 (117)
T ss_dssp             EEEESC--CEEEEEETTEECCCTTTC--SSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCccCC--CeEEEEECCEeccccCCC--CcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEh
Confidence            456665  479999998777543210  1123444455555555     557999999999999873  3345555555

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.86  E-value=1.6e-08  Score=58.67  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             eccCCCCcEEEEEeC-----CE-EEEecc---c---ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          5 SGLPDKNYVLAWKRG-----IA-ILTAGS---T---KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~-----~~-~l~~~~---~---~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      ++.+.....|.|+|.     .. ++....   .   .....+||++.     ..++|+|.+++.+|+|.|.|.+.
T Consensus        27 s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~  101 (121)
T 2xt1_B           27 SGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYYCKAS  101 (121)
T ss_dssp             ESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEET
T ss_pred             cCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            443444678999982     23 333221   0   11235799886     35799999999999999999987

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.86  E-value=1.3e-08  Score=67.21  Aligned_cols=65  Identities=29%  Similarity=0.585  Sum_probs=51.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.+.|+|++..+..      ...++.+..+.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|.
T Consensus       245 ~~~~p~--~~~~W~~~~~~~~~------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  310 (403)
T 3laf_A          245 VSGYPP--PSFTWLRGEEVIQL------RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL  310 (403)
T ss_dssp             EEEESC--CEEEEEETTEECCC------SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCCC--CeEEEEECCeeccC------CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            345554  48999998877753      356787888889999999999999999999986 366777777775

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.85  E-value=2.4e-08  Score=62.49  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             CCEEEEc----CeEEEEccCCCCCCEEEEEEeec
Q psy14103         34 KRIQLVD----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        34 ~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..    +++|+|.+|+.+|+|.|+|.+.+
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSF   97 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEcc
Confidence            8998873    56999999999999999999984

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.85  E-value=4.5e-09  Score=64.20  Aligned_cols=61  Identities=10%  Similarity=-0.098  Sum_probs=39.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC------CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE------PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~------~~~~~~~L~V~g   77 (78)
                      .+.+.|+|++..+...      ..++...    ....|.|.+|+.+|+|.|+|.+.+..      ..+..++|.|.|
T Consensus       128 ~~~v~W~k~g~~~~~~------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (198)
T 1ugn_A          128 FDGFILCKEGEDEHPQ------CLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVLG  198 (198)
T ss_dssp             CSEEEEEEC------C------EEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEEC
T ss_pred             CcEEEEEECCCccCCc------cccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEecC
Confidence            4689999987665321      1112121    24799999999999999999999863      226788888876

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.85  E-value=1.1e-08  Score=63.82  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             EeccCCCCcEEEEEeC---C--EEE-Eecc----c--ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG---I--AIL-TAGS----T--KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~--~~l-~~~~----~--~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+.+.|.|+|+   .  ..+ ....    .  .....+||.+..     +++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~  101 (225)
T 1op3_H           24 VSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGS  101 (225)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             ecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            4455534578999983   1  222 2211    0  012357998863     579999999999999999999975

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.85  E-value=1.1e-08  Score=63.31  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=41.0

Q ss_pred             EeccCCCCcEEEEEeCC-----E-EEEecc------cc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGI-----A-ILTAGS------TK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~-~l~~~~------~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|+.     . ++....      ..  ....+||.+.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  103 (220)
T 1pz5_B           24 ASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGA  103 (220)
T ss_dssp             EESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             EcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecC
Confidence            34444345789999832     1 222211      00  0124799886     2459999999999999999999985


Q ss_pred             C
Q psy14103         65 E   65 (78)
Q Consensus        65 ~   65 (78)
                      .
T Consensus       104 ~  104 (220)
T 1pz5_B          104 V  104 (220)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.85  E-value=1.1e-08  Score=58.53  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=37.8

Q ss_pred             eccCCCCcEEEEEeC--C---EEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          5 SGLPDKNYVLAWKRG--I---AILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~--~---~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++.+.....|.|+|+  +   ..+.      ..++||.+.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        25 ~~~~~~~~~v~W~r~~~g~~~~~~~------~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           25 RDASYALGSTCWYRKKSGEGNEESI------SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             CSCSSCCCCEEEEEEETTSCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             CCCcCCCCEEEEEEeCCCCCceEeE------EeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            333333567999983  1   1121      245799764     357999999999999999999987

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.85  E-value=2.3e-08  Score=60.77  Aligned_cols=67  Identities=18%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             CcEEEEEeCCEEEEe-cccc----cCCCCCEEEE--cCeEEEEccCCCCCCEEEEEEeeccC--Cc----eEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTA-GSTK----VTPDKRIQLV--DGYNLQITDLQTTDAGSYQCQIGTLE--PK----EITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~-~~~~----~~~~~R~~~~--~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~----~~~~~L~V~g   77 (78)
                      .+.+.|.|++..+.. ....    ..-.+|..+.  ++.+|.|.+|+.+|+|.|+|.+.+..  ..    +..+.|.|.+
T Consensus        27 ~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~  106 (201)
T 1dr9_A           27 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKA  106 (201)
T ss_dssp             HCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEEC
T ss_pred             ccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcC
Confidence            368999998765521 1100    0013466543  56899999999999999999999853  22    4567777754

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.84  E-value=3.3e-08  Score=57.14  Aligned_cols=65  Identities=22%  Similarity=0.391  Sum_probs=44.3

Q ss_pred             cEEEEEeCC------EEEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         12 YVLAWKRGI------AILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~------~~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ..+.|+|..      .++..... .....+||++.     ...+|+|.+++.+|+|.|.|.+...+ ..--...|.|+
T Consensus        33 ~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~l~f~~~~~~~  110 (117)
T 1xed_A           33 TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL  110 (117)
T ss_dssp             SCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             ceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCeeEEEEEEEe
Confidence            469999832      23333322 12356899875     35799999999999999999998653 44455555554

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.84  E-value=5.2e-09  Score=66.04  Aligned_cols=55  Identities=22%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             CCcEEEEEeC-----CEEEEe-ccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAILTA-GST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~~-~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...|.|+|+     ...+.. ... .....+||.+.   ..++|.|.+++.+|+|.|+|.+.+.
T Consensus        32 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (256)
T 3ux9_B           32 GSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDN   96 (256)
T ss_dssp             TTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEEC
Confidence            4578999982     133322 211 12346799876   3568999999999999999999874

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.84  E-value=2.8e-08  Score=57.28  Aligned_cols=44  Identities=36%  Similarity=0.567  Sum_probs=35.4

Q ss_pred             CCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCC---ceEEEEEEEEe
Q psy14103         34 KRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEP---KEITHTLEILG   77 (78)
Q Consensus        34 ~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~L~V~g   77 (78)
                      +|..+. ++++|+|.|++.+|+|.|.|++.....   ......|.|..
T Consensus        63 ~Rl~l~~~~~SL~I~nl~~~DsG~Y~c~i~~~~~~~~~~~~~~L~V~~  110 (111)
T 2pkd_A           63 ERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYR  110 (111)
T ss_dssp             TCEEECTTTCCEEECSCCGGGCEEEEEEEEESSTTSEEEEEEEEEEEC
T ss_pred             CcEEEeCCCEEEEECCCCHHHCEEEEEEEEeCCCCceEEEEEEEEEEc
Confidence            677776 589999999999999999999986542   45777777753

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.84  E-value=6.8e-09  Score=65.10  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eec---c-cc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAG---S-TK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~---~-~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      ++|.+.+...|.|+|+.     ..+ ...   . ..  ....+||.+.     .+++|+|.+|+.+|+|.|+|.+.+...
T Consensus        24 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~  103 (227)
T 1mju_H           24 ASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWF  103 (227)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCc
Confidence            45554445789999832     112 111   0 00  0125799886     357999999999999999999987421


Q ss_pred             --ceEEEEEEEE
Q psy14103         67 --KEITHTLEIL   76 (78)
Q Consensus        67 --~~~~~~L~V~   76 (78)
                        ....+.|.|.
T Consensus       104 ~~~~~~~~L~V~  115 (227)
T 1mju_H          104 PYWGQGTLVTVS  115 (227)
T ss_dssp             EEECCCEEEEEC
T ss_pred             eEEcCcEEEEEc
Confidence              1123456554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.83  E-value=1.6e-08  Score=64.35  Aligned_cols=38  Identities=18%  Similarity=0.317  Sum_probs=33.9

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|+|.+
T Consensus       240 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             EEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             EEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            3479999999999999999999987 5888999999875

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.83  E-value=2.7e-08  Score=62.77  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             CcEEEEEeCC-----EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGI-----AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.|.|+|+.     ..+......  ....+||.+.   .+++|+|.+++.+|+|.|+|.+.+..
T Consensus        68 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  132 (252)
T 3bkj_L           68 HTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLV  132 (252)
T ss_dssp             CBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBS
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCC
Confidence            5789999832     223221111  1235799876   44699999999999999999998763

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.83  E-value=3.5e-08  Score=57.30  Aligned_cols=55  Identities=11%  Similarity=0.260  Sum_probs=38.7

Q ss_pred             CCcEEEEEeC-----CEEE-Eecccc----cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGSTK----VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~~----~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|.     ...| ...+..    ....+||++.    .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        28 ~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           28 NHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGG   96 (121)
T ss_dssp             CCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            3568999982     2333 332211    1126899886    2479999999999999999999864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.83  E-value=1e-08  Score=62.84  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             CCcEEEEEe---C--CEEEEe-cccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC----ceEEEEEEE
Q psy14103         10 KNYVLAWKR---G--IAILTA-GSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP----KEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k---~--~~~l~~-~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~----~~~~~~L~V   75 (78)
                      +.+.|.|+|   +  ...+.. .... ....+||.+.   .+++|.|.+|+.+|+|.|+|++.+...    .+..+.|.|
T Consensus        28 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V  107 (213)
T 3mj8_L           28 SDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTV  107 (213)
T ss_dssp             TTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEE
T ss_pred             CCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEE
Confidence            346899998   2  233322 1111 2255799864   568999999999999999999998643    345566666


Q ss_pred             E
Q psy14103         76 L   76 (78)
Q Consensus        76 ~   76 (78)
                      .
T Consensus       108 ~  108 (213)
T 3mj8_L          108 L  108 (213)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.83  E-value=9e-09  Score=67.91  Aligned_cols=66  Identities=18%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+..+.    ...++.. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus       336 ~~g~p~--p~v~W~~~g~~~~~~~----~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          336 ANGNPK--PTVQWMVNGEPLQSAP----PNPNREV-AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EEEESC--CEEEEEETTEEGGGSC----CCTTEEE-ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccccCC--CceEEEECCEecCCCC----CCceEEe-cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            455554  4799999988775432    2334544 4569999999999999999999987 477888888875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.83  E-value=8.1e-09  Score=63.44  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             EeccCCCCcEEEEEeC--C-E---EEEeccc---c--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCCc
Q psy14103          4 LSGLPDKNYVLAWKRG--I-A---ILTAGST---K--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK   67 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~-~---~l~~~~~---~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~~   67 (78)
                      ++|.+...+.|.|+|+  + .   ++.....   .  ....+||.+..     +++|+|.+++.+|+|.|+|.+.+....
T Consensus        24 ~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  103 (210)
T 3d9a_H           24 VTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYW  103 (210)
T ss_dssp             EESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCB
T ss_pred             EecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCccc
Confidence            3454434478999983  2 1   1221110   0  01357998862     369999999999999999999975322


Q ss_pred             eEEEEEEEE
Q psy14103         68 EITHTLEIL   76 (78)
Q Consensus        68 ~~~~~L~V~   76 (78)
                      ...+.|.|.
T Consensus       104 ~~~~~l~V~  112 (210)
T 3d9a_H          104 GQGTLVTVS  112 (210)
T ss_dssp             CCCEEEEEC
T ss_pred             ccceEEEec
Confidence            223455553

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.83  E-value=1.1e-08  Score=61.45  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=44.0

Q ss_pred             CcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         11 NYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ...+.|+|.     .. ++...... ....+||++.   .+++|+|.+++.+|+|.|+|.+.+.. .......|.|.
T Consensus        29 ~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~~~fg~gt~L~V~  105 (143)
T 3u6r_L           29 NKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAVYYCQQRSDWVTFGGGTKVEIK  105 (143)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSBCEECCCEEEEEC
T ss_pred             ceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEEEEEEEecCCCEECCCEEEEEC
Confidence            457999982     13 33332221 1246899876   56899999999999999999998643 12233555554

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.83  E-value=9.4e-09  Score=64.55  Aligned_cols=66  Identities=24%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             CcEEEEEeC--C---EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         11 NYVLAWKRG--I---AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~--~---~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      .+.|.|+|+  +   ..+......  ...++||.+.   ..++|.|.+++.+|+|.|+|.+.+...  ....+.|.|.
T Consensus        35 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~  112 (247)
T 1svz_A           35 NTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIK  112 (247)
T ss_dssp             CBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEE
Confidence            578999983  1   222221111  1236899876   356999999999999999999997632  1223456554

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.83  E-value=5.2e-09  Score=73.48  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=48.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.  +.|.|+|++..|..+       .|+ ....++|.|.+++.+|+|.|+|.+.|. +..+..++|.|..
T Consensus       350 ~~g~P~--p~i~W~k~g~~l~~~-------~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          350 FKAYPQ--IRCTWTFSRKSFPCE-------QKG-LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             EEEESC--CEEEEEETTEEEECB-------CCB-CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C
T ss_pred             EEecCC--CEEEEEECCEECcCC-------ccc-ccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            456666  479999999888643       233 226679999999999999999999987 4667778887753

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.83  E-value=1.7e-08  Score=57.85  Aligned_cols=53  Identities=21%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CcEEEEEeC---C--E-EEEec-cc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG---I--A-ILTAG-ST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~---~--~-~l~~~-~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|+|.   .  . ++... .. ....++||++.     .+++|+|.+++.+|+|.|.|.+.+
T Consensus        30 ~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           30 SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   95 (116)
T ss_dssp             SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence            457999982   1  2 23322 11 11236899884     457999999999999999999986

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.83  E-value=1.1e-08  Score=63.74  Aligned_cols=46  Identities=22%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             CCCCEEEEc--CeEEEEccCCCCCCEEEEEEeeccCC-c-----eEEEEEEEEe
Q psy14103         32 PDKRIQLVD--GYNLQITDLQTTDAGSYQCQIGTLEP-K-----EITHTLEILG   77 (78)
Q Consensus        32 ~~~R~~~~~--~~sL~I~~v~~~D~G~Y~C~~~~~~~-~-----~~~~~L~V~g   77 (78)
                      ..+|+.+..  +.+|.|.+++.+|+|.|+|.+.+... .     +..+.|.|.+
T Consensus        78 ~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  131 (250)
T 2fbo_J           78 FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  131 (250)
T ss_dssp             GTTTEECSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETT
T ss_pred             cCceEEeccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEec
Confidence            357787664  57999999999999999999998642 2     4577777753

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.82  E-value=8.2e-09  Score=63.90  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             CCcEEEEEeC-----CEEEEec-cc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEE
Q psy14103         10 KNYVLAWKRG-----IAILTAG-ST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~~~-~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V   75 (78)
                      +.+.|.|+|+     ...+... .. ....++||.+.   .+++|.|.+++.+|+|.|+|.+.+...  ....+.|.|
T Consensus        52 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  129 (237)
T 3sob_L           52 VSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEI  129 (237)
T ss_dssp             CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEE
Confidence            3568999882     1233222 11 12356899876   678999999999999999999987532  223345554

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.82  E-value=1.1e-09  Score=64.05  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.|.  +.|.|+|++..+......   .....|+.+.      .+.+|.|.+++.+|+|.|+|.+.|.
T Consensus        45 ~~g~P~--p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  112 (137)
T 3qr2_A           45 AVGSPV--PEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND  112 (137)
T ss_dssp             EECSSC--CEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             EeeecC--CeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEec
Confidence            455554  589999854322110000   0012455543      4679999999999999999999986

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.82  E-value=2e-08  Score=62.31  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             EeccCCCCcEEEEEeC-----CEE-EEeccc---c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC--
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAI-LTAGST---K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE--   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~-l~~~~~---~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~--   65 (78)
                      ++|.+.+.+.|.|+|+     ... +.....   .  ....+||.+.     .+++|+|.+++.+|+|.|.|.+.+..  
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  103 (215)
T 1c5d_H           24 VSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNY  103 (215)
T ss_dssp             ECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSC
T ss_pred             ECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcc
Confidence            3444444578999983     122 222110   0  0134799886     24699999999999999999999753  


Q ss_pred             --CceEEEEEEEE
Q psy14103         66 --PKEITHTLEIL   76 (78)
Q Consensus        66 --~~~~~~~L~V~   76 (78)
                        .....+.|.|.
T Consensus       104 ~~~~~~~~~L~V~  116 (215)
T 1c5d_H          104 FDYWGPGTMVTVS  116 (215)
T ss_dssp             SCCBCCCEEEEEC
T ss_pred             cceEcCCEEEEec
Confidence              12233566664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.82  E-value=3.6e-08  Score=61.13  Aligned_cols=66  Identities=17%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             CCcEEEEEeCC---EE-EE-ecccc-----cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEE
Q psy14103         10 KNYVLAWKRGI---AI-LT-AGSTK-----VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHT   72 (78)
Q Consensus        10 ~~~~v~W~k~~---~~-l~-~~~~~-----~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~   72 (78)
                      ....|.|+|++   .+ +. .|...     ..-..|+...      ++++|+|.+|+.+|+|.|+|.+.+.. ..+..++
T Consensus        35 ~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~  114 (226)
T 4f80_A           35 ETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVE  114 (226)
T ss_dssp             TTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEE
Confidence            45689999953   11 11 11111     1234566654      35799999999999999999999853 3344444


Q ss_pred             EEE
Q psy14103         73 LEI   75 (78)
Q Consensus        73 L~V   75 (78)
                      +.+
T Consensus       115 ~~~  117 (226)
T 4f80_A          115 LKV  117 (226)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            433

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.82  E-value=2.2e-08  Score=63.50  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+............+  ....+|.|.+++.+|+|.|+|.+.|. +..+..+.|.+..
T Consensus       215 p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          215 VGFNVILKRGDTKLEIPLNSDFQDNYY--KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             SCCEEEEEETTEECCCCEEEEECSSSE--EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             CceEEEEEECCEEeeccCCcccccceE--EeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            346899999887764321111111122  23579999999999999999999987 5778888887643

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.82  E-value=5.9e-09  Score=60.07  Aligned_cols=67  Identities=19%  Similarity=0.233  Sum_probs=43.1

Q ss_pred             CcEEEEEeC---C--E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEEe
Q psy14103         11 NYVLAWKRG---I--A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~---~--~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~g   77 (78)
                      ...+.|+|.   .  . ++...... ....+||++.   .+++|+|.+++.+|+|.|.|.+.+...  -.....|.|.+
T Consensus        32 ~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~~~fg~gt~L~V~~  110 (120)
T 1oaq_L           32 SNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLG  110 (120)
T ss_dssp             GGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             CCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeEEEEEEccCCCcEECCCEEEEEcC
Confidence            467999882   2  2 33322211 1235899876   357999999999999999999986532  11234666643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.82  E-value=3.1e-08  Score=61.41  Aligned_cols=63  Identities=19%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEE-EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQL-VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ...|.|+|++..+.....    ..+... ..+.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus        44 ~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  108 (241)
T 3grw_A           44 TPSISWLKNGREFRGEHR----IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE  108 (241)
T ss_dssp             CCEEEEEETTEECCGGGS----TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CceeEEEECCcccCCCCc----ccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEec
Confidence            358999999887754321    122233 36789999999999999999999976 3556777777753

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.82  E-value=2.1e-08  Score=59.10  Aligned_cols=49  Identities=24%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             CCcEEEEEeC--C---EEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG--I---AILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~--~---~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...+.|+|+  +   ..+.      ..++||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        30 ~~~~v~Wyrq~~g~~~~~li------~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   88 (126)
T 3moq_A           30 ELKDTGWYRTKLGSTNEQSI------SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV   88 (126)
T ss_dssp             CCCEEEEEEEETTCCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCceEEEEEeCCCCCceEEE------EeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEc
Confidence            4568999982  1   2221      245799874     4679999999999999999999864

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=1.4e-08  Score=59.41  Aligned_cols=65  Identities=20%  Similarity=0.326  Sum_probs=42.8

Q ss_pred             CcEEEEEeCC----EEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeeccCC---ce----EEE
Q psy14103         11 NYVLAWKRGI----AILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTLEP---KE----ITH   71 (78)
Q Consensus        11 ~~~v~W~k~~----~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~~~---~~----~~~   71 (78)
                      ...|.|+|+.    .++.....  ...+||...        .+++|+|.+++.+|+|.|+|.+.+...   ..    ..+
T Consensus        38 ~~~v~W~r~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t  115 (136)
T 2d9c_A           38 VGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGT  115 (136)
T ss_dssp             CCCCEEEETTTSSCEEEEESSS--CCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCE
T ss_pred             CceEEEEeecCCCeEEEEEcCC--CcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCe
Confidence            3578999953    24433211  112566542        267999999999999999999987532   22    356


Q ss_pred             EEEEEe
Q psy14103         72 TLEILG   77 (78)
Q Consensus        72 ~L~V~g   77 (78)
                      +|.|.+
T Consensus       116 ~L~V~~  121 (136)
T 2d9c_A          116 ELSVRA  121 (136)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            788765

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.81  E-value=6.2e-09  Score=62.14  Aligned_cols=67  Identities=15%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             CcEEEEEeCCEEEEe--ccccc--C--CCCCEEEE------cCeEEEEccCCC-CCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTA--GSTKV--T--PDKRIQLV------DGYNLQITDLQT-TDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~--~~~~~--~--~~~R~~~~------~~~sL~I~~v~~-~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      ...|.|.+++..+..  |....  .  .-.|-++.      ++.+|+|.+++. +|+|.|+|.+.... ..+..+.|.|.
T Consensus        35 ~m~V~W~~~~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~sD~G~YtC~v~~~~~~~~~~i~Lkv~  114 (127)
T 2jjs_C           35 EVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYR  114 (127)
T ss_dssp             GEEEEEEETTEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHTSCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEEEEEEECCeEeEeeCCceeeccccccccceEechhhhccCcEEEEEcccccccCCcEEEEEEEeCCceEEEEEEEEEE
Confidence            378999997755544  32111  0  11122222      678999999999 79999999999865 46788888775


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      +
T Consensus       115 ~  115 (127)
T 2jjs_C          115 V  115 (127)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.81  E-value=8.5e-09  Score=59.01  Aligned_cols=55  Identities=29%  Similarity=0.382  Sum_probs=38.5

Q ss_pred             CcEEEEEeC-----CE-EEEeccc-c---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRG-----IA-ILTAGST-K---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~-~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ...+.|+|.     .. ++..... .   ...++||++.     ..++|+|.+++.+|+|.|.|.+.+.+
T Consensus        30 ~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~   99 (114)
T 1u9k_A           30 NSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPP   99 (114)
T ss_dssp             TSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             CceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCCChHHCEEEEEEEecCC
Confidence            468999983     12 3333211 1   1125899885     34799999999999999999999754

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.81  E-value=1.6e-08  Score=61.83  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             CCcEEEEEeCCE------EEEeccc----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCCc-----eE
Q psy14103         10 KNYVLAWKRGIA------ILTAGST----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK-----EI   69 (78)
Q Consensus        10 ~~~~v~W~k~~~------~l~~~~~----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~~-----~~   69 (78)
                      ..+.|.|+|+..      ++.....    .....+|+.+..     +++|.|.+++.+|+|.|+|.+.+....     +.
T Consensus        35 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~  114 (214)
T 2zg1_A           35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQN  114 (214)
T ss_dssp             CCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSS
T ss_pred             CceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCC
Confidence            457899999542      2332211    113458998863     468999999999999999999976411     23


Q ss_pred             EEEEEEEe
Q psy14103         70 THTLEILG   77 (78)
Q Consensus        70 ~~~L~V~g   77 (78)
                      .+.|.|.+
T Consensus       115 ~~~l~V~~  122 (214)
T 2zg1_A          115 KLNLEVTA  122 (214)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEec
Confidence            56676653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.81  E-value=1.8e-08  Score=64.76  Aligned_cols=63  Identities=24%  Similarity=0.449  Sum_probs=41.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--c---CeEEEEccCCC-CCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--D---GYNLQITDLQT-TDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~---~~sL~I~~v~~-~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+.        ..|+.+.  .   ..+|.|.+++. +|+|.|+|.+.+. +..+..+.|.|.
T Consensus        30 ~~g~p~--~~i~W~k~g~~i~--------~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   99 (304)
T 2yd9_A           30 ATGDPK--PRVTWNKKGKKVN--------SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL   99 (304)
T ss_dssp             EECSSC--CEEEEC---------------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEE
T ss_pred             EEEeCC--CeEEEEECCEECC--------CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEe
Confidence            345544  5899999877663        3566554  2   26899999998 9999999999976 455667777775

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.81  E-value=1.4e-08  Score=63.72  Aligned_cols=65  Identities=29%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             cEEEEEeCC-----EEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         12 YVLAWKRGI-----AIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~-----~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      ..|.|+|+.     ..+ ..... .....+||.+.   .+++|.|.+++.+|+|.|+|.+.+...  ....+.|.|.
T Consensus        34 ~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~  110 (250)
T 3esu_F           34 NYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIR  110 (250)
T ss_dssp             TCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEE
Confidence            478999831     233 22221 12356899775   456999999999999999999987532  2233455553

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.80  E-value=3.2e-08  Score=61.30  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             EeccCCCCcEEEEEeC--C---E-EEEeccc--------ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--I---A-ILTAGST--------KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~-~l~~~~~--------~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+...|.|+|.  +   . ++.....        .....+||++.     .+++|+|.+|+.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           24 ASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGD  103 (221)
T ss_dssp             EESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred             cccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            3454444679999972  1   2 2222111        01235899886     3457999999999999999999875


Q ss_pred             C---CceEEEEEEEE
Q psy14103         65 E---PKEITHTLEIL   76 (78)
Q Consensus        65 ~---~~~~~~~L~V~   76 (78)
                      .   .......|.|.
T Consensus       104 ~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H          104 VYNRQWGQGTLVTVS  118 (221)
T ss_dssp             TTCCCBBCCEEEEEC
T ss_pred             ChhheECCCEEEEEe
Confidence            2   22333455553

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.80  E-value=5.1e-10  Score=79.47  Aligned_cols=65  Identities=28%  Similarity=0.410  Sum_probs=0.0

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +|.|.  +.|.|+|++..+..       +.|+.+. .+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.++
T Consensus       691 ~g~P~--p~v~W~k~g~~l~~-------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  757 (772)
T 3v2a_R          691 SGNPP--PQIMWFKDNETLVE-------DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA  757 (772)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CccCC--CeEEEEECCeECcC-------CCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECC
Confidence            45554  47999998877753       3466554 4689999999999999999999987 57788999998763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.80  E-value=3.1e-08  Score=62.81  Aligned_cols=60  Identities=27%  Similarity=0.469  Sum_probs=45.4

Q ss_pred             CcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         11 NYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      .+.|.|+| ++..+..      ...|+.+.    ...+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus        32 ~~~i~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~   98 (291)
T 1qz1_A           32 DKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   98 (291)
T ss_dssp             CCEEEEECTTSCBCCS------SCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CcEeEEECCCCeECcc------CCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEee
Confidence            47899998 6665542      35677765    45799999999999999999999864  34566666664

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=98.80  E-value=1.8e-08  Score=57.51  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CcEEEEEeC-----CEE-EEeccc-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAI-LTAGST-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~-l~~~~~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|+|.     ... +.....     .....+||++.     .+.+|+|.+++.+|+|.|.|.+.+
T Consensus        31 ~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   99 (114)
T 1sjv_A           31 GGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTHY   99 (114)
T ss_dssp             -CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEECC
T ss_pred             CCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEEc
Confidence            467999982     123 332211     11235799986     347999999999999999999976

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.79  E-value=1.8e-08  Score=63.65  Aligned_cols=73  Identities=14%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eec------ccccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAG------STKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~------~~~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      ++|.+...+.|.|+|.  +   ..+ ...      .......+||.+..     .++|.|.+++.+|+|.|+|.+.+...
T Consensus        25 ~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  104 (253)
T 3uzq_A           25 ASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGF  104 (253)
T ss_dssp             ECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSC
T ss_pred             eeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCc
Confidence            3444444678999981  1   222 111      01112358998862     45699999999999999999997532


Q ss_pred             c--eEEEEEEEE
Q psy14103         67 K--EITHTLEIL   76 (78)
Q Consensus        67 ~--~~~~~L~V~   76 (78)
                      .  ...+.|.|.
T Consensus       105 ~~~~~~~~l~V~  116 (253)
T 3uzq_A          105 AYWGQGTLVTVS  116 (253)
T ss_dssp             CEECCCEEEEEC
T ss_pred             cEECCCcEEEEe
Confidence            2  234555554

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.79  E-value=1.6e-08  Score=57.81  Aligned_cols=54  Identities=20%  Similarity=0.388  Sum_probs=37.9

Q ss_pred             CCcEEEEEeCC-----E-EEEecccc----cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRGI-----A-ILTAGSTK----VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~~-----~-~l~~~~~~----~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....|.|+|..     . ++...+..    ....+||++.     .+++|+|.+++.+|+|.|.|.+.+
T Consensus        29 ~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   97 (116)
T 1tvd_A           29 SNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             SSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence            34679998831     2 33322211    1136899875     357999999999999999999986

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.79  E-value=2.5e-08  Score=61.69  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             CCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||.+..     +++|+|.+++.+|+|.|.|.+.+.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  103 (222)
T 1q9r_B           67 KGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHD  103 (222)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             CCceEEEEECCCCeEEEEECcCCcccCeEEEEEEecc
Confidence            47998863     469999999999999999999975

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.79  E-value=2.4e-08  Score=62.13  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=37.1

Q ss_pred             EEEEEeC-----CEEEEecccccCCCCCEEEEcC------eEEEEccCCCCCCEEEEEEeecc
Q psy14103         13 VLAWKRG-----IAILTAGSTKVTPDKRIQLVDG------YNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        13 ~v~W~k~-----~~~l~~~~~~~~~~~R~~~~~~------~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .|.|+|+     ...+..........+||++..+      ++|+|.+++.+|+|.|.|.+.+.
T Consensus        31 ~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   93 (207)
T 1ypz_E           31 SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTW   93 (207)
T ss_dssp             EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECB
T ss_pred             EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            6999882     1333221111124589988643      79999999999999999999875

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.79  E-value=2.9e-08  Score=63.48  Aligned_cols=64  Identities=23%  Similarity=0.414  Sum_probs=49.3

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEcc-CCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITD-LQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~-v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.  +.|.|+|++..+.       .+.|+.+.   ...+|.|.+ ++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus       129 ~g~p~--p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  197 (305)
T 2nzi_A          129 SGKPD--PVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (305)
T ss_dssp             EEESC--CEEEEEESSSBCC-------SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CCCCC--CEEEEEECCEECC-------CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec
Confidence            44444  4899999876553       35677665   457999999 9999999999999987 4667778888764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.79  E-value=1.6e-08  Score=63.02  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CcEEEEEeC---C--EEEEeccc-c-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         11 NYVLAWKRG---I--AILTAGST-K-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~---~--~~l~~~~~-~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      .+.|.|+|+   .  ..+..... . ....+||.+.   .+++|.|.+++.+|+|.|+|.+.+..  .....+.|.|.
T Consensus        34 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~  111 (240)
T 1moe_A           34 VGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIK  111 (240)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             CceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEe
Confidence            467999983   1  22322111 1 1236799886   34689999999999999999999863  23445566664

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.79  E-value=4e-08  Score=59.53  Aligned_cols=26  Identities=27%  Similarity=0.602  Sum_probs=23.3

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+++|.|.+|+.+|+|.|+|.+.+..
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~  106 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFP  106 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEET
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCC
Confidence            46789999999999999999998754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.78  E-value=3.2e-08  Score=62.33  Aligned_cols=66  Identities=24%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             CcEEEEEeCC-----EEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         11 NYVLAWKRGI-----AIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      .+.|.|+|+.     ..+ ...+.. ...++||.+.   .+++|+|.+++.+|+|.|+|.+.+...  ....+.|.|.
T Consensus        30 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~  107 (242)
T 2znx_A           30 GNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEIT  107 (242)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEc
Confidence            4689999831     233 221111 1236799876   357999999999999999999997632  1223455553

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.78  E-value=2.4e-08  Score=65.81  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             CcEEEEEeCCEEEEeccccc-CCCCCEEEE-----------c--CeEEEEccCCCCCCEEEEEEeecc---CCceEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKV-TPDKRIQLV-----------D--GYNLQITDLQTTDAGSYQCQIGTL---EPKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~-~~~~R~~~~-----------~--~~sL~I~~v~~~D~G~Y~C~~~~~---~~~~~~~~L   73 (78)
                      .+.|.|+|++..+....... ..+.++.+.           .  ..+|.|.+++.+|+|.|+|.+.|.   +..+..+.|
T Consensus       210 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l  289 (363)
T 1wio_A          210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL  289 (363)
T ss_dssp             EEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEE
T ss_pred             ceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeE
Confidence            56899999765543210000 024566653           2  459999999999999999999987   466777788


Q ss_pred             EEE
Q psy14103         74 EIL   76 (78)
Q Consensus        74 ~V~   76 (78)
                      .|.
T Consensus       290 ~V~  292 (363)
T 1wio_A          290 VVM  292 (363)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.78  E-value=2.9e-08  Score=59.87  Aligned_cols=67  Identities=13%  Similarity=0.284  Sum_probs=42.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cce--EEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKE--ITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~--~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+...... ..+..+.  ....|.|.+++.+|+|.|+|.|.|.. ..+  .+..|+|
T Consensus       142 ~~g~p~--p~i~W~~~~~~~~~~~~~-~~~~~~~--~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          142 AEGSPA--PSVTWDTEVKGTTSSRSF-KHSRSAA--VTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEBSC--CEEEEEESSCCEEEEEEE-ECSSSEE--EEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ccCCcC--ceEEEEECCcccccCceE-ecCCcEE--EEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            345555  589999976555432211 1122222  23579999999999999999999863 444  4444444

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.78  E-value=5.2e-08  Score=56.25  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             CCcEEEEEeC-----CE-EEEecc--c--c--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGS--T--K--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~--~--~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....|.|+|.     .. ++....  .  .  ....+||++..     .++|+|.+++.+|+|.|.|.+.+
T Consensus        32 ~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~  102 (123)
T 2p45_B           32 TYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLKPEDTATYYCAAGG  102 (123)
T ss_dssp             CCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCCGGGCEEEEEEESS
T ss_pred             cCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence            4578999982     22 233211  0  0  12347999872     47999999999999999999986

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.78  E-value=1.5e-08  Score=63.53  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.|...+.|.|+|+  +   ..+ .....      .....+||.+..     .++|+|.+|+.+|+|.|+|.+.+.
T Consensus        26 ~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           26 ASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRS  103 (247)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             eccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeecc
Confidence            4565544568999982  1   122 21110      112457998863     468999999999999999999985

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.78  E-value=1.2e-08  Score=62.46  Aligned_cols=67  Identities=18%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             CCcEEEEEeC---C--EEEEe-cccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC---ceEEEEEEEE
Q psy14103         10 KNYVLAWKRG---I--AILTA-GSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP---KEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~---~--~~l~~-~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~L~V~   76 (78)
                      +.+.|.|+|+   .  ..+.. .... ....+||.+.   .+++|.|.+++.+|+|.|+|.+.+...   .+..+.|.|.
T Consensus        26 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           26 SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEEC
T ss_pred             CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEe
Confidence            4568999982   2  22222 1111 1245799865   567999999999999999999998643   3344556554

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.78  E-value=1.5e-08  Score=64.15  Aligned_cols=61  Identities=18%  Similarity=0.278  Sum_probs=40.9

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eec------ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAG------STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~------~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|.  +   ..+ ...      .......+||.+.     ..++|+|.+++.+|+|.|+|.+.+.
T Consensus        26 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  103 (256)
T 3umt_A           26 TSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDR  103 (256)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             EecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccC
Confidence            3455544678999872  1   222 111      0011245899886     2466999999999999999999975

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.78  E-value=4.3e-08  Score=62.25  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=27.7

Q ss_pred             CCEEEEc----CeEEEEccCCCCCCEEEEEEeec
Q psy14103         34 KRIQLVD----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        34 ~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..    +++|+|.+|+.+|+|.|+|.+.+
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~  121 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSA  121 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEES
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEec
Confidence            8999874    78999999999999999999996

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.78  E-value=6.5e-09  Score=64.53  Aligned_cols=67  Identities=13%  Similarity=0.290  Sum_probs=45.1

Q ss_pred             EeccCCCCcEEEEEe----CCEEEEecccccCCCCCEEE---------EcCeEEEEccCCCCCCEEEEEEeecc-CCceE
Q psy14103          4 LSGLPDKNYVLAWKR----GIAILTAGSTKVTPDKRIQL---------VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEI   69 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k----~~~~l~~~~~~~~~~~R~~~---------~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~   69 (78)
                      ++|.|.  +.+.|+|    ++..+..+.     ..++..         ....+|.|.+++.+|+|.|+|.+.|. +..+.
T Consensus       138 ~~~~p~--p~v~W~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~  210 (241)
T 3grw_A          138 VYSDAQ--PHIQWLKHVEVNGSKVGPDG-----TPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK  210 (241)
T ss_dssp             EECSSC--CEEEEEEECCSSSCSSCTTT-----CCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             EecCCC--CEEEEEEcccCCCcccCCCC-----ceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEE
Confidence            345554  4899998    555443211     112211         13568999999999999999999986 56778


Q ss_pred             EEEEEEEe
Q psy14103         70 THTLEILG   77 (78)
Q Consensus        70 ~~~L~V~g   77 (78)
                      .+.|.|.+
T Consensus       211 ~~~l~V~~  218 (241)
T 3grw_A          211 AFWLSVHG  218 (241)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEecC
Confidence            88888764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.78  E-value=1.9e-08  Score=60.09  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=43.5

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE--c---CeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV--D---GYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~---~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      .+.+.|+|++..+..       ..++.+.  .   ..+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|..
T Consensus        31 ~~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~   97 (182)
T 1rhf_A           31 EPDIQWVKDGAVVQN-------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG   97 (182)
T ss_dssp             SCCEEEEETTEECCS-------SEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEEC
T ss_pred             CCeEEEEECCeecCC-------CCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEec
Confidence            357999998877753       2333332  2   3799999999999999999999863  244567777653

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.78  E-value=1.8e-08  Score=61.82  Aligned_cols=60  Identities=13%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++....|.|+|++..+..+ ..    ....++.|...  .+|.|.+++.+|+|.|+|.+.+..
T Consensus       135 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G~Y~C~a~n~~  199 (210)
T 1lk3_L          135 MNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMS--STLSLTKADYESHNLYTCEVVHKT  199 (210)
T ss_dssp             EEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             EEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEE--EEEEEChHHhccCCcEEEEEEecC
Confidence            34544444689999998877543 11    11244556443  489999999999999999999864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.78  E-value=1.8e-08  Score=63.81  Aligned_cols=61  Identities=15%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             EeccCCCCcEEEEEeC-----CEE-EEec-c-----cccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAI-LTAG-S-----TKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~-l~~~-~-----~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+.+.|.|+|.     ... +... .     ......+||.+.     ..++|+|.+++.+|+|.|+|.+.+.
T Consensus        30 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           30 ASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             eecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEec
Confidence            3443334578999972     122 2222 1     011245799887     2467999999999999999999975

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.78  E-value=1.8e-08  Score=64.98  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eecc------cccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGS------TKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~------~~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+.+.|.|+|+.     ..+ ....      .....++||.+..     .++|+|.+++.+|+|.|+|.+.+.
T Consensus        50 ~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~  127 (282)
T 1qok_A           50 ASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTP  127 (282)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccC
Confidence            35555345789999832     222 2110      0011357998763     479999999999999999999975

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.78  E-value=4.5e-09  Score=64.66  Aligned_cols=66  Identities=18%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             CCcEEEEEeCC---EEEEecccc---cCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKRGI---AILTAGSTK---VTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~~---~~l~~~~~~---~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      ..+.|.|+|++   .++......   ....+|+.+..      +.+|.|.+++.+|+|.|+|.+.+....+..+.|.|
T Consensus        28 ~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V  105 (222)
T 4i0k_A           28 AQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQV  105 (222)
T ss_dssp             TTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCC
T ss_pred             CceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCCCceEEEEEEE
Confidence            45799999853   222221111   12457887764      78999999999999999999997544444444443

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.77  E-value=6.2e-08  Score=56.30  Aligned_cols=65  Identities=22%  Similarity=0.363  Sum_probs=42.3

Q ss_pred             CcEEEEEeCC----EEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeeccC-C--ce----EEE
Q psy14103         11 NYVLAWKRGI----AILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTLE-P--KE----ITH   71 (78)
Q Consensus        11 ~~~v~W~k~~----~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~--~~----~~~   71 (78)
                      ...|.|+|+.    .++.....  ...+|+...        ..++|+|.+++.+|+|.|+|.+.+.. +  ..    ...
T Consensus        33 ~~~v~W~r~~~~~~~li~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~fg~GT  110 (127)
T 2jju_A           33 VGPIMWFRGAGAGRELIYNQKE--GHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGT  110 (127)
T ss_dssp             CCCEEEEECSSTTCEEEEESSS--SCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEECCSSSCEEEEECCCE
T ss_pred             CCEEEEEecCCCCcEEEEECCC--CccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEcCCCCccceEEeCCCe
Confidence            3579999853    23433211  123577642        36799999999999999999998753 2  11    235


Q ss_pred             EEEEEe
Q psy14103         72 TLEILG   77 (78)
Q Consensus        72 ~L~V~g   77 (78)
                      .|.|.+
T Consensus       111 ~L~V~~  116 (127)
T 2jju_A          111 ELSVRA  116 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            677764

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.77  E-value=5.1e-08  Score=57.74  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             CCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEEe
Q psy14103         33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~g   77 (78)
                      .+||++.   .+.+|+|.+++.+|+|.|.|.+.+...  -.....|.|.+
T Consensus        64 ~~Rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~  113 (137)
T 3bdb_A           64 DSRFSMTVNDQKFDLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRLQFEG  113 (137)
T ss_dssp             CTTEEEEESSSBEEEEEESCCSTTCEEEEEEEECSSCEEEEEEEEECCCC
T ss_pred             CCcEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCeEEECCCEEEEEEC
Confidence            6899886   457999999999999999999986532  22444555543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.77  E-value=4.2e-09  Score=64.16  Aligned_cols=58  Identities=12%  Similarity=0.031  Sum_probs=42.1

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc----CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL----EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~L~V~g   77 (78)
                      ..+.|+|++..+..        .+.....+.+|.|.+|+.+|+|.|+|.+.+.    ...+..+.|.|.|
T Consensus       127 ~~~~w~k~g~~~~~--------~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~g  188 (188)
T 1oll_A          127 SMFLLLKEGRSSHV--------QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  188 (188)
T ss_dssp             SEEEEEEESSSCEE--------EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEEC
T ss_pred             CEEEEEECCccccc--------cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEecC
Confidence            57899987644432        1111235689999999999999999999864    2556778888876

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.77  E-value=4.8e-08  Score=62.10  Aligned_cols=60  Identities=25%  Similarity=0.312  Sum_probs=41.2

Q ss_pred             eccCCCCcEEEEEeC-----CEEEEecccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRG-----IAILTAGSTK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~-----~~~l~~~~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +|.+.....|.|+|+     ...|......  ....+||++.     .+.+|+|.+++.+|+|.|+|.+.+.
T Consensus        26 s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           26 KGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTL   97 (229)
T ss_dssp             CSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECC
T ss_pred             cCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecC
Confidence            344434568999872     2344332211  1236899986     3479999999999999999999864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.77  E-value=8.7e-09  Score=70.80  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEc-------CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVD-------GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~-------~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|... .|.|+|++..+..+      ..||....       ..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus       337 ~~g~P~p~-~v~W~k~g~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  409 (524)
T 2ec8_A          337 YEAFPKPE-HQQWIYMNRTFTDK------WEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV  409 (524)
T ss_dssp             EEEESCCC-EEEEESSSCBCSSS------BCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EeecCCCc-EEEEEECCeeccCC------ccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEE
Confidence            45666653 49999988766432      23554432       358999999999999999999987 46777788877


Q ss_pred             Ee
Q psy14103         76 LG   77 (78)
Q Consensus        76 ~g   77 (78)
                      ..
T Consensus       410 ~~  411 (524)
T 2ec8_A          410 NT  411 (524)
T ss_dssp             CE
T ss_pred             ec
Confidence            53

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.77  E-value=2.3e-08  Score=64.29  Aligned_cols=71  Identities=10%  Similarity=0.100  Sum_probs=49.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---------cCeEEEEccCCCCC-CEEEEEEeecc-CCceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTD-AGSYQCQIGTL-EPKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~   72 (78)
                      +.|.|.  +.|.|+|++..+....... ...++.+.         ....|.|.+++.+| +|.|+|.+.|. +..+..+.
T Consensus       233 ~~g~P~--p~i~W~~~g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~  309 (315)
T 1itb_B          233 VTGQLS--DIAYWKWNGSVIDEDDPVL-GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ  309 (315)
T ss_dssp             EEECTT--SEEEEEETTEECCTTCSSE-EEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEE
T ss_pred             EecCCC--CeeEEEECCEECCcccccc-cccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEE
Confidence            456555  4789999988875432110 01122221         23589999999999 99999999987 57788888


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |.|..
T Consensus       310 l~v~~  314 (315)
T 1itb_B          310 LIYPV  314 (315)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            87754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.77  E-value=1.2e-08  Score=62.25  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=36.6

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEcc-CCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITD-LQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~-v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      .|.|+|++..|..+             .+.+|.|.+ ++.+|+|.|+|.+.+. +..+....+
T Consensus        28 ~i~W~k~g~~l~~~-------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~   77 (186)
T 1jbj_A           28 NLKWEKNGQELPQK-------------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA   77 (186)
T ss_dssp             TCEEEETTEEECSC-------------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred             ceEEEECCEECCCC-------------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence            48999999887531             345899999 9999999999999986 344444443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.77  E-value=1.4e-08  Score=66.86  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             EeccCCCCcEEEEEeC--CE---EE-Eeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccC-
Q psy14103          4 LSGLPDKNYVLAWKRG--IA---IL-TAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLE-   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~---~l-~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~-   65 (78)
                      ++|.+.+.+.|.|+|+  +.   .+ .....      .....+||.+..     +++|+|.+|+.+|+|.|+|.+.+.. 
T Consensus        24 ~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~  103 (344)
T 1za6_B           24 ASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMA  103 (344)
T ss_dssp             EESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTC
T ss_pred             cCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcc
Confidence            4555545678999984  21   12 11100      012357998863     4799999999999999999999843 


Q ss_pred             CceEEEEEEEE
Q psy14103         66 PKEITHTLEIL   76 (78)
Q Consensus        66 ~~~~~~~L~V~   76 (78)
                      .....+.|.|.
T Consensus       104 ~~~~~~~l~V~  114 (344)
T 1za6_B          104 YWGQGTLVTVS  114 (344)
T ss_dssp             EECCCEEEEEC
T ss_pred             eecCcEEEEEe
Confidence            22234456554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.77  E-value=2.8e-08  Score=63.44  Aligned_cols=66  Identities=26%  Similarity=0.332  Sum_probs=41.8

Q ss_pred             CcEEEEEeCC-----EEEEec-ccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         11 NYVLAWKRGI-----AILTAG-STK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l~~~-~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      ...|.|+|+.     ..+... ... ...++||++.   ..++|+|.+++.+|+|.|+|.+.+...  ....+.|.|.
T Consensus        49 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~  126 (268)
T 1x9q_A           49 NTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIK  126 (268)
T ss_dssp             CBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC--
T ss_pred             CceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEc
Confidence            4789999831     223221 111 1136899876   457999999999999999999997532  1223455554

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.77  E-value=1.3e-08  Score=62.34  Aligned_cols=65  Identities=23%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             CcEEEEEeC-----CEEEEe-ccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         11 NYVLAWKRG-----IAILTA-GST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l~~-~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      .+.|.|+|+     ...+.. ... .....+||.+.   .+++|.|.+++.+|+|.|+|.+.+..  .......|.|
T Consensus        30 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           30 SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEE
Confidence            568999982     122322 111 12346899876   56799999999999999999998753  2233344554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.77  E-value=5.4e-09  Score=64.16  Aligned_cols=67  Identities=13%  Similarity=0.229  Sum_probs=46.3

Q ss_pred             eccCCCCcEEEEEe----CCEEEEecccccCCCCCEEE--------EcCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103          5 SGLPDKNYVLAWKR----GIAILTAGSTKVTPDKRIQL--------VDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus         5 ~~~~~~~~~v~W~k----~~~~l~~~~~~~~~~~R~~~--------~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      .|.|.  +.+.|+|    ++..+..+.     ..+...        ....+|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus       143 ~~~p~--p~v~W~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  215 (231)
T 3ojm_B          143 YSDAQ--PHIQWIKHVEKNGSKYGPDG-----LPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA  215 (231)
T ss_dssp             ECSSC--CEEEEEEECCBTTBSBCTTS-----CBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ecCCC--CEEEEEECCCCCCccccCCC-----cceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEE
Confidence            45444  4899998    555443221     111111        13467999999999999999999987 4678888


Q ss_pred             EEEEEeC
Q psy14103         72 TLEILGF   78 (78)
Q Consensus        72 ~L~V~g~   78 (78)
                      .|.|..+
T Consensus       216 ~l~V~~~  222 (231)
T 3ojm_B          216 WLTVLPK  222 (231)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            8888753

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.77  E-value=4.8e-08  Score=55.49  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=28.4

Q ss_pred             CCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.   ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           64 DSRFSMTVNDQKFDLNIIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             CTTEEEEESSSBEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEcCCeEEEEECCCChhHCEEEEEEEccC
Confidence            6899886   4579999999999999999999874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.77  E-value=4.7e-08  Score=59.17  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             CCcEEEEEeCCEEE----Eeccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAIL----TAGST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l----~~~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+    ..... ......|+.+.. .+|.|.+++.+|+|.|+|.+.+..   ..+..+.|.|..
T Consensus        29 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~  103 (212)
T 1f97_A           29 SSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV  103 (212)
T ss_dssp             SSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEB
T ss_pred             CCcEEEEEECCCceeeEEecCCcccccccCcEEeec-eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEc
Confidence            35689999843221    11111 123467887765 899999999999999999999752   446777777753

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.76  E-value=5e-08  Score=55.82  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=37.9

Q ss_pred             CCcEEEEEeC-----CEE-EEecc---cc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAI-LTAGS---TK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~-l~~~~---~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|.     ... +....   ..  ....+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (116)
T 1a2y_B           30 TGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD  100 (116)
T ss_dssp             TSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            4578999882     222 33211   11  1124799876     3579999999999999999999864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.76  E-value=7.7e-09  Score=64.94  Aligned_cols=60  Identities=8%  Similarity=-0.039  Sum_probs=42.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc------CCceEEEEEEEEeC
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL------EPKEITHTLEILGF   78 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~------~~~~~~~~L~V~g~   78 (78)
                      .+.+.|+|++..+..        .+.....+..|.|.+|+.+|+|.|+|.+.+.      ...+..+.|.|.|+
T Consensus       134 ~~~~~W~k~g~~~~~--------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          134 FDRFSLAKEGELSLP--------QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             CSEEEEEETTCSSCC--------SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CCEEEEEECCCcccc--------cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            357899998765421        1222235789999999999999999999864      14556778888763

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.76  E-value=2.2e-08  Score=62.12  Aligned_cols=55  Identities=15%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~g   77 (78)
                      ...+.|+|++..+..            ...+..|.|.+++.+|+|.|+|.+.|.  ...+..+.|.|.+
T Consensus       118 ~~~v~W~k~g~~~~~------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          118 LHKVTYLQNGKGRKY------------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             CEEEEEEETTEEEEE------------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CceEEEEECCcEeec------------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence            367999998877642            123568999999999999999999984  2556677777764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.76  E-value=3.7e-08  Score=62.24  Aligned_cols=61  Identities=16%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             EeccCCCCcEEEEEeC----C-EEE-Eec--cc---ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AIL-TAG--ST---KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~l-~~~--~~---~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+...|.|+|+    . ..+ ...  ..   .....+||.+..     .++|+|.+++.+|+|.|+|++.+.
T Consensus        32 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           32 VTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDS  108 (257)
T ss_dssp             EEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             EEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecC
Confidence            4454445679999982    1 222 111  00   112457998862     458999999999999999999975

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.76  E-value=3.3e-09  Score=64.23  Aligned_cols=65  Identities=14%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             cEEEEEeCCEEEEecccc--cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTK--VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~--~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~   76 (78)
                      +.+.|+|++..+..+...  ...+.+|.+. ...+|.|.+++.+|+|.|+|.+.|. +..  +..++|.|.
T Consensus       138 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             ceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            489999987766543221  1233566554 5689999999999999999999987 344  455555553

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.76  E-value=4.4e-08  Score=56.27  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=27.7

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           65 KGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCeEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            5799986     3479999999999999999999864

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.76  E-value=3.2e-08  Score=56.40  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             CCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         33 DKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      .+||++..     ..+|+|.+++.+|+|.|.|.+.+....  .....|.|.+
T Consensus        63 ~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~  114 (116)
T 3bj9_1           63 PPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSTHVFGSGTQLTVLS  114 (116)
T ss_dssp             CTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSSCCEECCCEEEEEES
T ss_pred             CCcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCCCCcEECCCEEEEEec
Confidence            58998862     349999999999999999999865322  2345667665

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.76  E-value=2e-08  Score=61.84  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             CcEEEEEeCC-----EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGI-----AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.|.|+|+.     ..+......  ....+||.+.   .+++|.|.+++.+|+|.|+|.+.+..
T Consensus        31 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   95 (216)
T 2xzc_L           31 NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSS   95 (216)
T ss_dssp             GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCC
Confidence            4689999832     222221111  1235799876   45699999999999999999999864

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.76  E-value=4.5e-08  Score=57.18  Aligned_cols=55  Identities=22%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             CCcEEEEEeC---C--E-EEEecc-c----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG---I--A-ILTAGS-T----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~---~--~-~l~~~~-~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.   .  . ++.... .    .....+||++.     .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  100 (127)
T 1kxt_B           30 SSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPG  100 (127)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEECSSSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             cceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEEcC
Confidence            3567999982   1  2 333322 1    11235799986     2479999999999999999999864

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.76  E-value=1.3e-08  Score=65.24  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=39.9

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      .+.|.|+|++..+.       .+.|+.+. .+.+|.|.+++.+|+|.|+|.+.+.. ..+..+.|
T Consensus        36 ~~~v~W~~~~~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l   93 (317)
T 2y25_A           36 ETHIVWYKDEREIS-------VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL   93 (317)
T ss_dssp             TCEEEEEETTEEEC-------CSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECC
T ss_pred             CCEEEEEECCeEcC-------CCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEE
Confidence            46899999988775       34566554 56899999999999999999998753 33333333

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.76  E-value=4e-08  Score=61.79  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             CcEEEEEeC--C---EEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRG--I---AILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~--~---~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.|.|+|+  +   ..+.....  .....+||.+.   .+.+|.|.+++.+|+|.|+|.+.+..
T Consensus        72 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  136 (254)
T 2c1o_A           72 KTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHF  136 (254)
T ss_dssp             CBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSS
T ss_pred             CCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCc
Confidence            478999972  1   22222111  11235799876   45699999999999999999999763

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.76  E-value=1.5e-08  Score=61.92  Aligned_cols=45  Identities=16%  Similarity=0.313  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.+.|.|+|++..+...       .+    ...+|.|.+++.+|+|.|+|.+.|..
T Consensus       132 p~p~i~W~k~g~~i~~~-------~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~  176 (186)
T 1jbj_A          132 TDKTIKWLKDGSIISPL-------NA----TKNTWNLGNNAKDPRGTYQCQGAKET  176 (186)
T ss_dssp             SCSCEEEEETTEECCCS-------SC----CSSCCEEEETTSCCEEEEEEEESSCE
T ss_pred             CCCeEEEEECCEECccc-------CC----CcceEEECCCCcCcCEEEEEEEEcCc
Confidence            45789999999877421       11    56789999999999999999999853

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.75  E-value=3.4e-08  Score=56.15  Aligned_cols=53  Identities=21%  Similarity=0.370  Sum_probs=37.1

Q ss_pred             CCcEEEEEeC-----CEEE-Eecccc-cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGSTK-VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~~-~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      ....|.|+|.     ...| ...... ....+||++.     ..++|+|.+++.+|+|.|.|.+.
T Consensus        28 ~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   92 (112)
T 2z35_A           28 GYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS   92 (112)
T ss_dssp             SCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred             CCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            3468999982     1333 322111 1135899885     35789999999999999999998

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.75  E-value=2.6e-08  Score=65.58  Aligned_cols=56  Identities=23%  Similarity=0.429  Sum_probs=44.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|.  +.|.|+|++..+..              .+.+|.|.+++.+|+|.|+|.+.|. +..+..++|.|
T Consensus       331 ~~g~p~--p~i~W~~~g~~i~~--------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          331 YTGNPI--KTVSWMKDGKAIGH--------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEECC--CEEEEEETTEECSC--------------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccccC--CeEEEEECCEECcc--------------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            455655  47999999887632              2468999999999999999999987 57777887776

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.75  E-value=3.5e-08  Score=56.23  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             CCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++..     +.+|+|.+++.+|+|.|.|.+...
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           64 DKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             TTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEccC
Confidence            368998763     469999999999999999999853

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.75  E-value=3.3e-08  Score=56.87  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           64 FRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRGGH  101 (120)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            35799886     3479999999999999999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.75  E-value=1.7e-08  Score=61.74  Aligned_cols=68  Identities=18%  Similarity=0.275  Sum_probs=45.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      ++|.++....|.|+|++..+..+ ..    ....+++|..  ..+|.|.+++.+|+|.|+|.+.+.. ......++
T Consensus       136 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          136 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             EeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEE--EEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            34433344589999998887544 11    1124456653  3589999999999999999999874 43444444

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.75  E-value=5.2e-08  Score=55.65  Aligned_cols=54  Identities=19%  Similarity=0.391  Sum_probs=37.8

Q ss_pred             CcEEEEEeC-----CE-EEEeccc---cc--CCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG-----IA-ILTAGST---KV--TPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~---~~--~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|.     .. ++.....   ..  .-.+||++.   .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   98 (115)
T 2otu_A           31 TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDT   98 (115)
T ss_dssp             TCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred             CeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChhHCEEEEEEEecC
Confidence            467999882     22 3332211   11  125799876   3579999999999999999999864

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.75  E-value=1.6e-08  Score=61.29  Aligned_cols=58  Identities=9%  Similarity=0.305  Sum_probs=42.0

Q ss_pred             cEEEEEeC--CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRG--IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~--~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|+|+  ...+..        .+.....+.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       152 ~~v~W~~~~~~~~~~~--------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          152 LQFEWQKLSDSQTMPT--------PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             CEEEEEECSTTCCCCG--------GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CEEEEEECCCCCccCc--------cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            58999994  333321        1111224569999999999999999999987 4667888887753

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.75  E-value=9e-08  Score=59.79  Aligned_cols=53  Identities=13%  Similarity=0.227  Sum_probs=36.8

Q ss_pred             CCcEEEEEeC-----CEEE-Eecccc----cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEee
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGSTK----VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~~----~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +.+.|.|+|.     ...+ ...+..    ....+||.+.    .+++|+|.+|+.+|+|.|+|.+.
T Consensus        29 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   95 (240)
T 3q5y_A           29 GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASS   95 (240)
T ss_dssp             TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEc
Confidence            4568999981     1222 221110    1234799886    36789999999999999999997

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.75  E-value=7.5e-08  Score=58.95  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             EeccCCCCcEEEEEeC---C--EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRG---I--AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~--~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.+  .+.|.|+|+   .  ..+......  ....+||.+.   .+++|.|.+++.+|+|.|+|.+.+..
T Consensus        24 ~~~~~--~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   93 (210)
T 1lk3_L           24 ASESV--TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNG   93 (210)
T ss_dssp             ESSCC--TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcc--CCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            34544  346999882   1  222221111  1235799876   45699999999999999999999764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.75  E-value=3.3e-08  Score=63.46  Aligned_cols=66  Identities=24%  Similarity=0.308  Sum_probs=42.4

Q ss_pred             CcEEEEEeCC-----EEEEec-ccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         11 NYVLAWKRGI-----AILTAG-STK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l~~~-~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      .+.|.|+|+.     ..+... ... ...+.||.+.   .+++|+|.+++.+|+|.|+|.+.+...  ....+.|.|.
T Consensus        41 ~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~  118 (276)
T 3auv_A           41 STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIK  118 (276)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-
T ss_pred             CCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEe
Confidence            4679999832     233221 111 1236799886   346999999999999999999997531  2333455543

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.75  E-value=3.8e-08  Score=56.55  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=27.9

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           65 KGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  101 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcc
Confidence            4799886     3479999999999999999999864

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.75  E-value=1.4e-08  Score=69.49  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             cEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.|.|+|++..+..+...   .....|. .....+|.|.+|+.+|+|.|+|.+.|.  .+..+.|.|..
T Consensus       258 p~i~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~  323 (423)
T 3qs7_E          258 FGLTWELENKALEEGNYFEMSTYSTNRT-MIRILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVE  323 (423)
T ss_dssp             CCEEEEESSSBCCGGGEEEEEEEETTTE-EEEEEEEEESSCCTTTCEEEEEEETTE--EEEEEEEEEES
T ss_pred             cEEEEEECCEEccccceeecccccCCce-eEEEEEEEEeecCHHHCEEEEEEEecC--CCceEEEEEEe
Confidence            578999987655322100   0012222 334568999999999999999999997  78888888864

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.74  E-value=2.1e-08  Score=64.55  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=41.0

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eec----ccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAG----STK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~----~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|+.     ..+ ...    ...  ...++||.+.     .+++|+|.+|+.+|+|.|+|++.+.
T Consensus        30 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  107 (261)
T 2xqy_G           30 ASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGY  107 (261)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             eCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecC
Confidence            44554445789999841     222 211    000  1135799886     3579999999999999999999975

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=98.74  E-value=5.4e-08  Score=55.53  Aligned_cols=65  Identities=22%  Similarity=0.353  Sum_probs=43.0

Q ss_pred             cEEEEEeC--C---EEEEec-ccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         12 YVLAWKRG--I---AILTAG-STKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~--~---~~l~~~-~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ..+.|+|.  +   .++... .......+||++.    +.++|+|.+++.+|+|.|.|.+....  .....++|.|.
T Consensus        28 ~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~~~d~~~~v~L~V~  104 (106)
T 2frg_P           28 AQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL  104 (106)
T ss_dssp             SEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcCCCCEEEEEEccCCHHHCEEEEEEeecCCCCCEeEEEEEEEe
Confidence            46899882  2   223221 1112246899874    33799999999999999999998654  22355666664

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.74  E-value=1.5e-08  Score=61.23  Aligned_cols=64  Identities=23%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--c--------CeEEEEccCCCCCCEEEEEEeeccC--CceEEEEE
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--D--------GYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTL   73 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--~--------~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L   73 (78)
                      |.|.  +.|.|+|++..+..+.     ..|+.+.  .        ..+|.|.+++.+|+|.|+|.+.+..  ..+..+.|
T Consensus        29 ~~p~--~~v~W~~~g~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l  101 (195)
T 2c5d_C           29 QGEP--PEVHWLRDGQILELAD-----STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYV  101 (195)
T ss_dssp             ESSC--CCCEEEETTEECCSCE-----EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCCC--cEEEEEECCEEcccCC-----CCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEE
Confidence            5443  4789999988775431     1233332  2        4689999999999999999999853  22333666


Q ss_pred             EEE
Q psy14103         74 EIL   76 (78)
Q Consensus        74 ~V~   76 (78)
                      .|.
T Consensus       102 ~V~  104 (195)
T 2c5d_C          102 GLE  104 (195)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.74  E-value=5.8e-08  Score=56.06  Aligned_cols=55  Identities=18%  Similarity=0.378  Sum_probs=37.9

Q ss_pred             CCcEEEEEeCC-----E-EEEecc--c--c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGI-----A-ILTAGS--T--K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~-----~-~l~~~~--~--~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|..     . ++....  .  .  ....+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           30 SNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAARSG  101 (123)
T ss_dssp             SSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             cCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            45789999831     2 233211  0  0  1135799886     2479999999999999999999864

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.74  E-value=3.6e-08  Score=58.53  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=43.2

Q ss_pred             CcEEEEEeC---C--E-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEE
Q psy14103         11 NYVLAWKRG---I--A-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~---~--~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~   76 (78)
                      ...|.|+|.   .  . ++...... ....+||++.   .+++|+|.+++.+|+|.|.|.+.+....  ..-..|.|.
T Consensus        37 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~  114 (135)
T 1p4b_L           37 SNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVL  114 (135)
T ss_dssp             GGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCCEECCCEEEEEE
Confidence            357899882   1  2 33322211 1236899876   4679999999999999999999864321  134456664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.74  E-value=1.1e-08  Score=66.33  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             eEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       291 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  327 (334)
T 1ry7_B          291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP  327 (334)
T ss_dssp             CCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEEC
T ss_pred             cEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEE
Confidence            38999999999999999999987 5788899999875

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.74  E-value=5.4e-08  Score=61.21  Aligned_cols=60  Identities=15%  Similarity=0.388  Sum_probs=40.1

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eeccc---c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGST---K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~~---~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++|.+.+...|.|+|+.     ..+ .....   .  ....+||++.     .+++|+|.+++.+|+|.|+|.+.+
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   99 (232)
T 1dn0_B           24 VYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPP   99 (232)
T ss_dssp             EESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEec
Confidence            34544445789999831     222 32210   0  1135899886     246999999999999999999983

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.74  E-value=1.5e-08  Score=64.62  Aligned_cols=61  Identities=18%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             EeccCCCCcEEEEEeC---C--EEE-Eec--c----cccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG---I--AIL-TAG--S----TKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~--~~l-~~~--~----~~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|+   .  ..+ ...  .    .....++||.+..     .++|.|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~  101 (256)
T 1nqb_A           24 ASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDY  101 (256)
T ss_dssp             ECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             eccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeec
Confidence            3455434578999983   1  122 211  0    0011357998863     479999999999999999999986

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.74  E-value=4.1e-08  Score=60.79  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             EeccCCCCcEEEEEeCC-EEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGI-AILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|.|+. ..+         .++.... .+++|.|.+|+.+|+|.|+|.+.+.. ..+..+.|.|..
T Consensus        25 ~~g~P~--p~i~W~~~~~~~~---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~   90 (202)
T 1vca_A           25 TTGCES--PFFSWRTQIDSPL---------NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS   90 (202)
T ss_dssp             EESCSS--CEEEEEETTCCCC---------SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             ecCCCC--CeEEEECCCCCCc---------cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEe
Confidence            456654  469998832 111         1233222 45789999999999999999999874 566778888864

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.74  E-value=7.1e-08  Score=66.84  Aligned_cols=67  Identities=15%  Similarity=0.217  Sum_probs=45.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ..+.|.|+|++..+...... ....+|....    ..+|.|.+++.+|+|.|+|.+.|..  ..+..++|.|.+
T Consensus       474 p~~~v~W~k~g~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          474 EKYWCKWNNTGCQALPSQDE-GPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             ccEEEEEeecCceeeeccCC-CCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEe
Confidence            34688999987665432111 1122343332    2699999999999999999999873  344558888875

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.73  E-value=6e-08  Score=57.70  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             CcEEEEEeC---C---EEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--C--ceEEEEEEEEe
Q psy14103         11 NYVLAWKRG---I---AILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--P--KEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~---~---~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~--~~~~~~L~V~g   77 (78)
                      ...+.|+|.   +   ..|.      ...+||+..   ..++|+|.+++.+|+|.|+|.+.+..  .  -.....|.|.|
T Consensus        46 ~~~v~Wyrq~~~g~~~~~l~------~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~  119 (134)
T 3kg5_A           46 SGNVSWLWKQEMDENPQQLK------LEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMG  119 (134)
T ss_dssp             TCCCEEEEESSSSSCCEECC------CCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEEC
T ss_pred             CceEEEEEECCCCCCcEEEE------EECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEec
Confidence            367899885   2   2221      246899875   45799999999999999999998652  1  12345677765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.73  E-value=1.4e-08  Score=60.96  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      +.+.|+|++..+...            ..+..|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.+
T Consensus       116 ~~~~W~~~g~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          116 YKVIYYKDGEALKYW------------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             EEEEEEETTEECCSC------------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEEEECCEEEeee------------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence            589999988776321            135799999999999999999999852  455667888875

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.73  E-value=4.7e-08  Score=55.86  Aligned_cols=32  Identities=25%  Similarity=0.527  Sum_probs=27.7

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           65 KGRFTISRDDAKKTLSLQMNSLRAEDTAVYYCARGGV  101 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            5799886     2479999999999999999999864

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.73  E-value=1e-07  Score=60.04  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      .+.+|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|.
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence            57899999999999999999999863 66777788774

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.73  E-value=1.6e-08  Score=61.96  Aligned_cols=61  Identities=23%  Similarity=0.240  Sum_probs=39.8

Q ss_pred             eccCCC-CcEEEEEeC---CEE--EEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          5 SGLPDK-NYVLAWKRG---IAI--LTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         5 ~~~~~~-~~~v~W~k~---~~~--l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +|.+.. .+.|.|+|+   ..+  +......  ....+||.+.   .+.+|.|.+++.+|+|.|+|.+.+..
T Consensus        25 ~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   96 (212)
T 1q0x_L           25 STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNN   96 (212)
T ss_dssp             SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCc
Confidence            444431 357999983   221  2211111  1235799875   34699999999999999999999764

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.73  E-value=4.2e-08  Score=62.56  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEeC
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILGF   78 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g~   78 (78)
                      |.|.+...|.|.|....+          +|.... ....|.|.+|+.+|+|.|.|++.+.. ..+..++|+|.++
T Consensus        32 ~~p~P~~~i~W~~~~~~l----------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~   96 (210)
T 1gsm_A           32 ACADRGASVQWRGLDTSL----------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAF   96 (210)
T ss_dssp             CCSSTTCEEEEESSTTTT----------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CCCCCCcceEEeeccccc----------CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEec
Confidence            445544489999833111          333333 55789999999999999999999875 5567888888753

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.73  E-value=7.2e-08  Score=56.21  Aligned_cols=60  Identities=27%  Similarity=0.333  Sum_probs=40.0

Q ss_pred             eccCCCCcEEEEEeC---C--EE-EEecc-c--c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRG---I--AI-LTAGS-T--K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~---~--~~-l~~~~-~--~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++.+.+...|.|+|.   .  .. +.... .  .  ....+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        25 s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (124)
T 1yc7_A           25 SGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCG  100 (124)
T ss_dssp             ESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            333334578999982   1  22 22221 1  0  1135799886     3479999999999999999999864

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=98.72  E-value=1e-07  Score=56.67  Aligned_cols=44  Identities=14%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEE
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~   76 (78)
                      .+||++.     ..++|+|.+++.+|+|.|.|.+......  .....|.|.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~  115 (139)
T 2d7t_H           65 QGRVTMTRDTSISTVYMEVRRLRSDDTAVYYCATGWWGMDVWGQGTLVTVS  115 (139)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEEC
T ss_pred             CCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeeCCcCEECCCEEEEEe
Confidence            4799986     3479999999999999999999863221  123455554

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.72  E-value=4.2e-08  Score=62.95  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc--
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL--   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~--   64 (78)
                      ++|.+...+.|.|+|+.     ..+ .....      ....++||.+..     ..+|.|.+++.+|+|.|+|.+.+.  
T Consensus       158 ~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~  237 (276)
T 3auv_A          158 ASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFL  237 (276)
T ss_dssp             EESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSST
T ss_pred             ecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcC
Confidence            45555445789999842     222 11110      012457998863     358999999999999999999986  


Q ss_pred             --CC--ceEEEEEEEE
Q psy14103         65 --EP--KEITHTLEIL   76 (78)
Q Consensus        65 --~~--~~~~~~L~V~   76 (78)
                        ..  -.....|.|.
T Consensus       238 ~~~~~~fg~gt~l~V~  253 (276)
T 3auv_A          238 PYAMDYWGQGTLVTVS  253 (276)
T ss_dssp             TCSCCCBCCCEEEEEC
T ss_pred             CcCceEECCCEEEEEc
Confidence              21  2234566664

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.72  E-value=6e-08  Score=61.51  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-C--ceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-P--KEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~--~~~~~~L~V~   76 (78)
                      .+.+.|+|++..+..     ..+.|+.+..+.+|.|.+++.+|+|.|+|.+.+.. .  ....+.|.|.
T Consensus       127 ~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~  190 (291)
T 2wim_A          127 APAVSWLYHNEEVTT-----ISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN  190 (291)
T ss_dssp             CCEEEEECC----CB-----CCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             CCEEEEEECCccccc-----cCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec
Confidence            357999998766542     24678988888899999999999999999999763 2  2344455553

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.72  E-value=8.2e-08  Score=63.22  Aligned_cols=65  Identities=18%  Similarity=0.326  Sum_probs=47.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|  .+.|.|+|++..+..+     ...|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus       124 ~~g~p--~~~i~W~~~g~~l~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  192 (389)
T 2jll_A          124 VKSNP--PASIHWRRDKLVLPAK-----NTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL  192 (389)
T ss_dssp             EEEES--CCEEEEEETTEESSCT-----TCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEecC--CCeEEEEECCccCCcc-----cCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            34555  3689999998877542     23577665   3568999999999999999999986 35555555554

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.72  E-value=3.1e-09  Score=68.34  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|+|++..+..         .....++..|.|.+++.+|+|.|+|.|.|. +..+..++|.|..
T Consensus       244 ~v~W~k~~~~~~~---------~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          244 KSVWSRLDGQWPD---------GLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             EEECCBSSSCCCS---------SCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             EEEEEECCeECCC---------cEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            5899997654432         122235567789999999999999999987 4777888888864

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.72  E-value=2.5e-08  Score=56.81  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=39.8

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG   77 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g   77 (78)
                      .+.|+|++..+..            ...+..|.|.+|+.+|+|.|+|.+.+..    ..+..+.|.|.|
T Consensus        43 ~~~w~k~g~~l~~------------~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           43 LFSFYKDGRIVQS------------RGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQG   99 (108)
T ss_dssp             EEEEEETTEEEEE------------EESCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEEECCBC
T ss_pred             EEEEEECCcCccC------------CCcccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEEEEEEe
Confidence            4889998877641            2356789999999999999999999752    335566666665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.72  E-value=4.6e-08  Score=62.08  Aligned_cols=61  Identities=21%  Similarity=0.392  Sum_probs=41.8

Q ss_pred             EeccCCCCcEEEEEeC-----CEEE-Eeccc---c--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAIL-TAGST---K--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~l-~~~~~---~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.|...+.|.|+|+     ...+ .....   .  ....+||.+..     .++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  100 (257)
T 1f3r_B           24 VSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLY  100 (257)
T ss_dssp             EESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESS
T ss_pred             EecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEccc
Confidence            4566544678999983     1222 21110   0  11357998863     479999999999999999999975

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.72  E-value=1.1e-08  Score=71.12  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             CCcEEEEEeCCEEEEecccc-----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTK-----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~-----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+......     ..-.+|+.+..+++|.|.+++.+|+|.|+|++.+.. .. +..+.|.|..
T Consensus       395 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          395 PPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             SSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEB
T ss_pred             CCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEc
Confidence            45689999953211000000     011468888888899999999999999999999864 43 6778888754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.72  E-value=2.4e-08  Score=66.56  Aligned_cols=63  Identities=24%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             EeccCCCCcEEEEEeC-CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRG-IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.+.|+|+ +..+..        .......+++|.|.+++.+|+|.|+|.+.|. +.....+.|.|.
T Consensus       229 ~~g~P~--p~i~W~k~~~~~~~~--------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  293 (384)
T 3kld_A          229 ALGNPV--PTILWRRADGKPIAR--------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY  293 (384)
T ss_dssp             EEEESC--CEEEEEETTCCCCCT--------TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeecCC--CcEEEEeCCCccccc--------cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe
Confidence            345554  48899984 444421        1111235679999999999999999999987 356677777775

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=98.72  E-value=7.1e-08  Score=56.10  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=27.8

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        70 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  106 (127)
T 1i3u_A           70 KGRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred             CCeEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            4799886     3479999999999999999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.72  E-value=9.5e-08  Score=58.39  Aligned_cols=71  Identities=24%  Similarity=0.259  Sum_probs=44.2

Q ss_pred             EeccCCCCcEEEEEeCC-----EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEE
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITH   71 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~   71 (78)
                      ++|.+.  +.|.|+|+.     ..+......  ....+||.+.   .+.+|.|.+++.+|+|.|+|.+.+....  ...+
T Consensus        25 ~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~  102 (213)
T 3d9a_L           25 ASQSIG--NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGT  102 (213)
T ss_dssp             ESSCCT--TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             CCCCCC--CCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCE
Confidence            344443  469998721     222222111  1234799876   4569999999999999999999976321  2234


Q ss_pred             EEEEE
Q psy14103         72 TLEIL   76 (78)
Q Consensus        72 ~L~V~   76 (78)
                      .|.|.
T Consensus       103 ~l~V~  107 (213)
T 3d9a_L          103 KLEIK  107 (213)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            55553

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.72  E-value=7.2e-09  Score=68.31  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=47.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      ++|.|.+...|.|+|++..+..               ...|.|.+++.+|+|.|+|.+.+.+.......|+|+
T Consensus       305 ~~g~p~p~~~i~W~~~~~~~~~---------------~~~l~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~V~  362 (363)
T 1wio_A          305 VWGPTSPKLMLSLKLENKEAKV---------------SKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVL  362 (363)
T ss_dssp             EESSCCTTCCEEEECSSSSCSE---------------EESSSEEEESSCCSEEEEEEECSSSSCCEEEEEEEC
T ss_pred             EccccCCCccEEEEeCCCceee---------------eeeeeeeeeccccceeEEEEEecCCeEEEecceEec
Confidence            5677777777999998765421               345788999999999999999988888888888875

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.71  E-value=5e-08  Score=56.20  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           65 QGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            4799886     3479999999999999999999864

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=98.71  E-value=9.7e-08  Score=55.67  Aligned_cols=55  Identities=20%  Similarity=0.389  Sum_probs=38.2

Q ss_pred             CCcEEEEEeC-----CE-EEEeccc----c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGST----K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~~----~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...|.|+|.     .. ++.....    .  ....+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (127)
T 2x1q_A           30 SNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSR  101 (127)
T ss_dssp             CCSEEEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEeCCCCEEEEEEcCCCHHHCEEEEEEEEec
Confidence            3568999982     22 3332210    0  1235799886     3479999999999999999999864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.71  E-value=1.4e-08  Score=61.91  Aligned_cols=62  Identities=10%  Similarity=0.041  Sum_probs=41.4

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCE-EEEcCeEEEEccCCCCCCEEEEEEeeccC------CceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRI-QLVDGYNLQITDLQTTDAGSYQCQIGTLE------PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~-~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------~~~~~~~L~V~g   77 (78)
                      ..+.|+|++..+.....    ..+. ....+..|.|.+|+.+|+|.|+|.+.|..      ..+..+.|.|.|
T Consensus       128 ~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~G  196 (196)
T 3p2t_A          128 DTFLLCKERAAHPLLCL----RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG  196 (196)
T ss_dssp             EEEEEEETTCCCGGGSE----EEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC-
T ss_pred             CEEEEEeCCCcccceee----cccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeCC
Confidence            46889997654432110    0011 12356789999999999999999999762      356677777765

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.71  E-value=5.8e-08  Score=56.59  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=35.3

Q ss_pred             CcEEEEEeCC-----EEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRGI-----AILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|+|+.     ..+.      ..++||.+.     ..++|+|.+++.+|+|.|.|.+..
T Consensus        31 ~~~v~Wyrq~~g~~~~~~~------~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N           31 LSTGYWYRKPPGSRNEESI------SDGGRYVETVNRGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             EEEEEEEEECTTCSCCEEE------CSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCceeeE------ecCCCeEEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            4689999832     1121      245799764     468999999999999999999974

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.71  E-value=9.1e-08  Score=55.43  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  103 (124)
T 1dlf_H           66 VKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYY  103 (124)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             cCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            35799886     3579999999999999999999863

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.71  E-value=7.4e-08  Score=62.53  Aligned_cols=60  Identities=12%  Similarity=0.137  Sum_probs=35.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++....|.|+|++..+..+..   ....+++|.+.  ..|.|.+++.+|+|.|+|.+.|..
T Consensus       244 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~--~~L~i~~~~~~d~G~Y~C~a~N~~  306 (327)
T 2wng_A          244 VRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWM--SWLLVNVSAHRDDVKLTCQVEHDG  306 (327)
T ss_dssp             EEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEE--EEEEC-------CCEEEEEEEETT
T ss_pred             EccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEE--EEEEEccccccCCCEEEEEEEeCC
Confidence            4454555568999999988764321   11234445443  369999999999999999999875

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.70  E-value=4.5e-08  Score=63.91  Aligned_cols=65  Identities=14%  Similarity=0.246  Sum_probs=45.7

Q ss_pred             EeccC--CCCcEEEEEeCCEEE-EecccccCCCCCEEEE-------cCeEEEEccCCCCCCE-EEEEEeecc-CCceEEE
Q psy14103          4 LSGLP--DKNYVLAWKRGIAIL-TAGSTKVTPDKRIQLV-------DGYNLQITDLQTTDAG-SYQCQIGTL-EPKEITH   71 (78)
Q Consensus         4 ~~~~~--~~~~~v~W~k~~~~l-~~~~~~~~~~~R~~~~-------~~~sL~I~~v~~~D~G-~Y~C~~~~~-~~~~~~~   71 (78)
                      ++|.|  .....|.|+|++..+ ..       +.+....       ...+|.|.+++.+|+| .|+|.+.|. +..+..+
T Consensus       252 ~~g~p~~~~~i~v~W~~~g~~i~~~-------~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~  324 (329)
T 3oq3_B          252 AVSTSLLVDDVLIDWENPSGWIIGL-------DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT  324 (329)
T ss_dssp             EEETTCCTTCCEEEEECTTSCBCCB-------CSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEE
T ss_pred             EEECCCCCCCcEEEEEECCeeeecc-------CCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEE
Confidence            45565  232388999986653 32       2222221       4678999999999999 999999987 4667777


Q ss_pred             EEEE
Q psy14103         72 TLEI   75 (78)
Q Consensus        72 ~L~V   75 (78)
                      +|.|
T Consensus       325 ~l~v  328 (329)
T 3oq3_B          325 TVVL  328 (329)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7766

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.70  E-value=1.2e-07  Score=56.26  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             CCCcEEEEEeC-----CE-EEEecc--c----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          9 DKNYVLAWKRG-----IA-ILTAGS--T----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         9 ~~~~~v~W~k~-----~~-~l~~~~--~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .....+.|+|.     .. ++....  .    .....+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        29 ~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  101 (136)
T 1zvy_A           29 DSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATRK  101 (136)
T ss_dssp             TTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEeC
Confidence            34578999982     22 333221  0    01135799886     3479999999999999999999864

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.70  E-value=3.5e-08  Score=65.04  Aligned_cols=59  Identities=22%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|+|++..+..       ..+.....+.+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus       252 ~~v~W~~~~~~~~~-------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  311 (404)
T 3p3y_A          252 PDIAWYKKGGDLPS-------DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA  311 (404)
T ss_dssp             CEEEEEETTBCCCT-------TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CcEEEEECCEECCC-------CcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence            48999998776532       12222235679999999999999999999986 4667777777753

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.70  E-value=9.5e-08  Score=60.30  Aligned_cols=52  Identities=23%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             cEEEEEeC-----CE-EEE-ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----IA-ILT-AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~~-~l~-~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.     .. ++. ........++||++.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        33 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   96 (210)
T 2eys_A           33 SNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSD   96 (210)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEc
Confidence            47999982     22 333 221111236899986     347999999999999999999986

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.70  E-value=1.5e-08  Score=61.28  Aligned_cols=66  Identities=15%  Similarity=0.328  Sum_probs=44.6

Q ss_pred             CCcEEEEEeCC-EEEE---eccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103         10 KNYVLAWKRGI-AILT---AGST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~-~~l~---~~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~   76 (78)
                      +.+.|.|+|++ .+..   .... ......|+.+.. .+|.|.+++.+|+|.|+|.+.+..   ..+..+.|.|.
T Consensus        32 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~  105 (209)
T 1nbq_A           32 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL  105 (209)
T ss_dssp             SSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEE
T ss_pred             CCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEe
Confidence            34689999843 2211   1111 123457887765 899999999999999999999752   34456666664

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=98.70  E-value=6e-08  Score=56.49  Aligned_cols=32  Identities=22%  Similarity=0.431  Sum_probs=27.9

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (127)
T 1mqk_H           65 KGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHEY  101 (127)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            5799886     3579999999999999999999864

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.70  E-value=2.6e-08  Score=64.76  Aligned_cols=61  Identities=20%  Similarity=0.346  Sum_probs=46.6

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEc-CeEEEEccCCCCCCEEEEEEeeccC-----CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVD-GYNLQITDLQTTDAGSYQCQIGTLE-----PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~~-----~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++..+..      ...|+.+.. ...|.|.+++.+|+|.|+|.+.+..     ..+..+.|.|..
T Consensus       154 ~~~v~W~k~g~~~~~------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          154 DVKIQWYKDSLLLDK------DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             CCCBCCEESSCBCCT------TCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred             CceEEEecCCeeCCC------CCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence            357899998776642      346887764 3699999999999999999999752     346677777753

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.70  E-value=6.5e-08  Score=61.34  Aligned_cols=55  Identities=16%  Similarity=0.316  Sum_probs=39.0

Q ss_pred             CCcEEEEEeC-----CEEE-Ee--cccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAIL-TA--GSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~--~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|.|+|.     ...+ ..  +......++||.+.     ..++|+|.+++.+|+|.|+|.+.+.
T Consensus        31 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   98 (256)
T 3tf7_C           31 ATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAK   98 (256)
T ss_dssp             SCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECT
T ss_pred             CCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecC
Confidence            4568999982     1222 22  11122357899873     4678999999999999999999875

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.70  E-value=6.7e-08  Score=61.89  Aligned_cols=67  Identities=24%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             CcEEEEEeC-----CEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEEe
Q psy14103         11 NYVLAWKRG-----IAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~g   77 (78)
                      .+.|.|+|+     ...+ ...... ...++||.+.   ..++|+|.+++.+|+|.|+|.+.+...  ....+.|.|..
T Consensus        40 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  118 (264)
T 2gjj_A           40 KNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKR  118 (264)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEc
Confidence            468999983     1222 221111 1135899876   357999999999999999999997532  12334666653

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.69  E-value=9.9e-09  Score=58.17  Aligned_cols=58  Identities=14%  Similarity=0.068  Sum_probs=39.8

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEE-EcCeEEEEccCCCCCCEEEEEEeecc-----CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQL-VDGYNLQITDLQTTDAGSYQCQIGTL-----EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~-----~~~~~~~~L~V~g   77 (78)
                      ..+.|+|++..+..+        |+.. ....+|.|.+|+.+|+|.|.|++.+.     ...+..+.|.|.|
T Consensus        33 ~~~~w~k~g~~~~~~--------~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~~Sdpl~L~V~~   96 (105)
T 2vsd_A           33 AWVQLWLNGTLRFDK--------EKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVLTI   96 (105)
T ss_dssp             EEEEEEETTEEEEEE--------EECTTCSEEEEEEECCSGGGCEEEEEEEEEETTEEECCCCCCEEECCC-
T ss_pred             cEEEEEECCccceee--------eccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCCcccCCCCCEEEEEEE
Confidence            567899987665421        2211 14568999999999999999999874     2345566666644

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.69  E-value=4.2e-08  Score=61.42  Aligned_cols=31  Identities=19%  Similarity=0.293  Sum_probs=27.0

Q ss_pred             CCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         34 KRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        34 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +||.+.    .+++|.|.+|+.+|+|.|+|.+.+.
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   99 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTS   99 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            789876    3568999999999999999999853

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.69  E-value=3.1e-08  Score=60.92  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             CCEEEEcCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEEe
Q psy14103         34 KRIQLVDGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEILG   77 (78)
Q Consensus        34 ~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~g   77 (78)
                      ++|.+..+++|.|.+++.+|+|.|+|.+.+.  +..+..+.|.|..
T Consensus        69 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  114 (231)
T 2pet_A           69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA  114 (231)
T ss_dssp             SCCEECTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEB
T ss_pred             cccccCCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEe
Confidence            3444777788999999999999999999975  4566777787763

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.69  E-value=3.8e-08  Score=62.70  Aligned_cols=65  Identities=25%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             cEEEEEe--CCEE---E-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         12 YVLAWKR--GIAI---L-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k--~~~~---l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      +.|.|+|  ++..   + ..... .....+||.+.   ..++|+|.+++.+|+|.|+|.+.+...  -.....|.|.
T Consensus       156 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          156 TYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             BCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            4899999  4322   2 11111 11235799875   457899999999999999999987432  2234455554

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.69  E-value=5.7e-08  Score=60.86  Aligned_cols=60  Identities=17%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             eccCCCCcEEEEEeC---C---EEEEeccc------ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRG---I---AILTAGST------KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~---~---~~l~~~~~------~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++.+.....|.|+|.   .   .++.....      .....+||.+.     .+++|+|.+++.+|+|.|.|.+.+.
T Consensus        25 ~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (230)
T 3n9g_H           25 SGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWG  101 (230)
T ss_dssp             ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             ecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            443444578999972   1   22222210      11235899886     3467999999999999999999864

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=98.69  E-value=4.7e-08  Score=56.96  Aligned_cols=52  Identities=17%  Similarity=0.378  Sum_probs=36.3

Q ss_pred             cEEEEEeC---C---EEEEec--c-ccc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG---I---AILTAG--S-TKV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~---~---~~l~~~--~-~~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..|.|+|.   .   .++...  . ...  ...+||++.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        33 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~  100 (127)
T 3cx5_J           33 YYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCARSE  100 (127)
T ss_dssp             SEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence            68999882   2   233322  1 111  134799875     347999999999999999999886

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.69  E-value=4.2e-08  Score=63.26  Aligned_cols=61  Identities=23%  Similarity=0.392  Sum_probs=40.8

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eecc----cc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAGS----TK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~~----~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+.+.|.|+|+  +   ..+ ....    ..  ....+||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (257)
T 3bn9_D           24 ASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYL  101 (257)
T ss_dssp             EESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECC
T ss_pred             eccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            3454434578999983  1   222 2211    00  1135899886     3579999999999999999999975

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.69  E-value=4.7e-08  Score=55.77  Aligned_cols=54  Identities=13%  Similarity=0.200  Sum_probs=37.0

Q ss_pred             CCcEEEEEeC---C--E-EEEeccccc-----CCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG---I--A-ILTAGSTKV-----TPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~---~--~-~l~~~~~~~-----~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|.   .  . ++...+...     .+++||++.   .+ +|+|.+++.+|+|.|.|.+...
T Consensus        29 ~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           29 QYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             TCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCCSCEEEEEEEESS
T ss_pred             CCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHhHCEEEEEEEEcC
Confidence            3468999982   1  2 333222111     113799875   34 9999999999999999999864

>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*

Probab=98.69  E-value=1.4e-07  Score=55.06  Aligned_cols=54  Identities=20%  Similarity=0.434  Sum_probs=37.8

Q ss_pred             CCcEEEEEeC-----CEEE-Eecc--c----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGS--T----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~--~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.     .+.| ....  .    .....+||++.     ...+|+|.+++.+|+|.|.|.+.+
T Consensus        32 ~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~Ca~~~  102 (123)
T 3k1k_C           32 NRYSMRWYRQAPGKEREWVAGMSSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNV  102 (123)
T ss_dssp             TTSCEEEEEECSSSCCEEEEEECSSSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             cccEEEEEEECCCCCCEEEEEEEcCCCceeeCccccccEEEEEeCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            4567999972     2333 3211  1    11235899886     357899999999999999999976

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.69  E-value=1.9e-07  Score=60.20  Aligned_cols=63  Identities=22%  Similarity=0.459  Sum_probs=41.7

Q ss_pred             EEEEEeCCE-----EEEeccc-ccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         13 VLAWKRGIA-----ILTAGST-KVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        13 ~v~W~k~~~-----~l~~~~~-~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      .|.|+|++.     .+..... ......|+.+.        .+++|.|.+++.+|+|.|+|++.+..  ..+..+.|.|
T Consensus        36 ~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v  114 (313)
T 4fqp_A           36 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV  114 (313)
T ss_dssp             EEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECC
T ss_pred             EEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeee
Confidence            589999542     1111111 23456777764        45789999999999999999987543  4455555554

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.69  E-value=7.9e-08  Score=57.90  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      .+||++.     ..++|+|.+++.+|+|.|.|.+......  .....|.|.+
T Consensus        68 ~~Rf~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~  119 (150)
T 3dmm_D           68 KKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVD  119 (150)
T ss_dssp             TTCCEEEESTTSSSCEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEES
T ss_pred             cCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEEecCCcceECCCEEEEEeC
Confidence            6899886     4689999999999999999999753211  1224566654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.69  E-value=6.4e-08  Score=59.50  Aligned_cols=67  Identities=15%  Similarity=0.304  Sum_probs=44.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~   72 (78)
                      +.|.++....|.|+|++..+..+ ..    ....++.|.+.  ..|.|..++.+|+|.|+|.+.+.. .......
T Consensus       138 ~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  210 (216)
T 2xzc_L          138 LNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHKVYACEVTHQGLSSPVTKS  210 (216)
T ss_dssp             EEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred             EEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEE--EEEEECHHHhCCCCcEEEEEEcCCCCCceEEe
Confidence            34433333589999998877544 11    11234556544  389999999999999999999864 3334433

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.69  E-value=7.4e-08  Score=61.85  Aligned_cols=56  Identities=27%  Similarity=0.464  Sum_probs=43.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.|.  +.|.|+|++..+....    ...|+....++.|.|.+++.+|+|.|+|.+.+..
T Consensus       132 ~~g~p~--~~v~W~k~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  187 (304)
T 2yd9_A          132 ASGNPD--PEITWFKDFLPVDPSA----SNGRIKQLRSGALQIESSEETDQGKYECVATNSA  187 (304)
T ss_dssp             EECSSC--CEEEEEETTEECCGGG----GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETT
T ss_pred             CccCCC--CeEEEEECCEECcCCC----CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCC
Confidence            345544  4899999988775421    2357777778899999999999999999999863

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.68  E-value=3.6e-08  Score=61.96  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++....|.|+|++..+..+ ..    ....+++|...  ..|.|.+++.+|+|.|+|.+.|..
T Consensus       178 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~  242 (254)
T 2c1o_A          178 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHNSYTCEATHKT  242 (254)
T ss_dssp             EEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             EecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEE--EEEEeccccccCCCeEEEEEEcCC
Confidence            44544445679999988776543 11    11234566543  589999999999999999999874

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=98.68  E-value=6.1e-08  Score=62.47  Aligned_cols=61  Identities=21%  Similarity=0.363  Sum_probs=40.8

Q ss_pred             EeccCCCCcEEEEEeC-----CEE-EEeccc-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAI-LTAGST-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~-l~~~~~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +++.+.....|.|+|.     ... +.....     .....+||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  100 (263)
T 3iu4_H           24 VSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARSGV  100 (263)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            3444444578999872     122 232211     01235899986     3467999999999999999999864

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.68  E-value=7.8e-08  Score=63.33  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V~g   77 (78)
                      ++|.|..  .+.|+|++..+...     ...|+...   ...+|.|.+++.+|+|.|+|.+.+.. .. +..+.|.|..
T Consensus       236 ~~g~p~~--~i~W~~~g~~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~  307 (395)
T 1bih_A          236 YGSNPMG--YPNYFKNGKDVNGN-----PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS  307 (395)
T ss_dssp             EECSSCC--CCEEEETTEECCCC-----TTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE
T ss_pred             eccCCCC--eEEEEECCEEcCCC-----CceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc
Confidence            3455544  58999998777432     23455432   23489999999999999999999863 33 3477887753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.68  E-value=9.8e-08  Score=59.34  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CCcEEEEEeC--C---E-EEEecccc----cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG--I---A-ILTAGSTK----VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~--~---~-~l~~~~~~----~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|.|+|+  +   . ++......    ....+||.+.    ..++|+|.+++.+|+|.|+|.+.+.
T Consensus        27 ~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (238)
T 2p1y_A           27 NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDL   95 (238)
T ss_dssp             CCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC-
T ss_pred             CCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeC
Confidence            4578999984  1   1 22211110    1235799886    3568999999999999999999975

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.68  E-value=4e-08  Score=59.10  Aligned_cols=64  Identities=20%  Similarity=0.366  Sum_probs=41.5

Q ss_pred             CCcEEEEEeCCE--EEEecccc-----cCCCCCEEEEc------CeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIA--ILTAGSTK-----VTPDKRIQLVD------GYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~--~l~~~~~~-----~~~~~R~~~~~------~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.+.|.|+|++.  ++......     ....+|+.+..      ..+|.|.+++.+|+|.|+|.+.+..   ..++|.|.
T Consensus        23 ~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~l~V~   99 (184)
T 2ny1_B           23 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVF   99 (184)
T ss_dssp             SCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEE
T ss_pred             CceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCC---CcEEEEEE
Confidence            346899999754  33221110     12346676642      5669999999999999999998752   24455553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.68  E-value=4.7e-08  Score=60.40  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=39.3

Q ss_pred             CcEEEEEeC---CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEE
Q psy14103         11 NYVLAWKRG---IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~---~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V   75 (78)
                      .+.|.|.|+   +..+..       ..++....+..|.|.+++.+|+|.|+|.+.+....  +..+.|.|
T Consensus        37 ~~~v~w~~~~~~g~~~~~-------~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v   99 (213)
T 2x1w_L           37 NLNVSLCARYPEKRFVPD-------GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV   99 (213)
T ss_dssp             TCCEEEEEETTTEEECCC-------SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEE
T ss_pred             CcEEEEEhhcCCCccccC-------CCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEE
Confidence            367899873   555532       35666667788999999999999999999875322  22245555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.68  E-value=1.3e-07  Score=65.50  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=46.4

Q ss_pred             CcEEEEEeCCE------EEEeccc-ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIA------ILTAGST-KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~------~l~~~~~-~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ...|.|+|++.      ++..... .....+|+.+..     ..+|.|.+++.+|+|.|+|.+.+. ...+..+.|.|..
T Consensus        32 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  111 (585)
T 2ocw_A           32 HTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQ  111 (585)
T ss_pred             cccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEec
Confidence            35799999642      2222111 112346888753     357999999999999999999875 4667778888753

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.68  E-value=1.2e-07  Score=61.76  Aligned_cols=60  Identities=18%  Similarity=0.311  Sum_probs=43.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc--CC---ceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL--EP---KEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~~---~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+.       ...++.. ....|.|.+++.+|+|.|+|.+.+.  +.   .+..+.|.|.+
T Consensus       153 p~~~v~W~k~~~~l~-------~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          153 VKPTITWYMGCYKIQ-------NFNNVIP-EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             SCCEEEEEETTEECC-------SCSSEEE-ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCceEEEeeCCEECC-------Cccceee-cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            346899999988763       2245543 3468999999999999999999985  22   25666666643

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.67  E-value=9.6e-08  Score=55.74  Aligned_cols=54  Identities=26%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             CcEEEEEeC-----C-EEEEe--cccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG-----I-AILTA--GSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~-----~-~~l~~--~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|.     . .++..  +... .  ...+||++.     ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        32 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~  101 (126)
T 2h32_A           32 VYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR  101 (126)
T ss_dssp             GCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCCChhHCEEEEEEEEcC
Confidence            468999982     1 23332  1111 1  125799986     3579999999999999999999865

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.67  E-value=4.3e-08  Score=60.75  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             eccCCCCcEEEEEeC--C---EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          5 SGLPDKNYVLAWKRG--I---AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~--~---~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +|.+.....|.|+|+  +   ..+......  ....+||.+.   .+++|.|.+++.+|+|.|+|++.+..
T Consensus        44 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  114 (234)
T 2j6e_L           44 SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDS  114 (234)
T ss_dssp             CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETT
T ss_pred             cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCC
Confidence            343433336999883  1   223222111  1235799876   45799999999999999999999764

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=98.67  E-value=1.4e-07  Score=59.17  Aligned_cols=51  Identities=16%  Similarity=0.301  Sum_probs=36.9

Q ss_pred             cEEEEEeC-----CE-EEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----IA-ILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~~-~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.     .. ++...... ...+||++.     .+.+|+|.+++.+|+|.|.|.+..
T Consensus        30 ~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   91 (206)
T 1kgc_D           30 DYIHWYRQLPSQGPEYVIHGLTSN-VNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPL   91 (206)
T ss_dssp             CCEEEEEECTTSCCEEEEEESSSS-EECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             ccEEEEEECCCCCcEEEEEECCCC-ccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEec
Confidence            36999872     12 33332221 136899986     347999999999999999999986

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.67  E-value=2.3e-07  Score=60.22  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=42.9

Q ss_pred             cEEEEEeCC----EEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeeccCCc------eEEEEE
Q psy14103         12 YVLAWKRGI----AILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTLEPK------EITHTL   73 (78)
Q Consensus        12 ~~v~W~k~~----~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~~~~------~~~~~L   73 (78)
                      +.|.|+|++    ..+...+.  ...+|+.+.        .+.+|.|.+++.+|+|.|+|.+.+....      +..+.|
T Consensus        34 ~~v~W~k~~~~~~~~i~~~~~--~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l  111 (327)
T 2wng_A           34 GPIQWFRGAGPARELIYNQKE--GHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTEL  111 (327)
T ss_dssp             CCEEEEESCSTTCEEEEETTS--SCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEE
T ss_pred             ceEEEEECCCCCceEEEEcCC--CCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEE
Confidence            579999964    23332111  234688763        4568999999999999999999986422      123567


Q ss_pred             EEEe
Q psy14103         74 EILG   77 (78)
Q Consensus        74 ~V~g   77 (78)
                      .|..
T Consensus       112 ~V~~  115 (327)
T 2wng_A          112 SVRA  115 (327)
T ss_dssp             EEEB
T ss_pred             EEEe
Confidence            6653

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.67  E-value=1.5e-08  Score=65.49  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEc-cCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQIT-DLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~-~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.|.|.. ..|.|+|++..+.         .... ..+.+|.|. +++.+|+|.|+|.+.|. +..+..+.|.|..
T Consensus       256 ~~g~p~p-~~i~W~~~~~~~~---------~~~~-~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          256 ADANPPA-TEYHWTTLNGSLP---------KGVE-AQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             EEEESCC-CEEEEEETTBSCC---------TTEE-EETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             CcCCCCC-CEEEEEECCCccc---------ccce-ecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence            3455554 1389999776542         2232 256799999 99999999999999987 4677888888754

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.67  E-value=3.4e-08  Score=61.72  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=28.4

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+||.+.     .+++|+|.+++.+|+|.|+|.+.+..
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  103 (228)
T 3bae_H           66 ESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFY  103 (228)
T ss_dssp             GGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEES
T ss_pred             CCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCC
Confidence            4799886     24899999999999999999998753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.67  E-value=5.2e-08  Score=61.00  Aligned_cols=65  Identities=23%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             cEEEEEe--CCE---EE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         12 YVLAWKR--GIA---IL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k--~~~---~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ..|.|+|  ++.   .+ ..... .....+||.+.   ...+|+|.+++.+|+|.|+|.+.+..  .......|.|.
T Consensus       165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            3799998  332   22 21111 11246899876   35689999999999999999999753  22344455553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.67  E-value=5.5e-08  Score=59.15  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      ...+.|+|++..+....     ..+.....+.+|.|.+|+.+|+|.|+|.+.+..   ..+..+.|.|.+
T Consensus        31 ~~~~~w~k~g~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           31 AVEYQLHFEGSLFAVDR-----PKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             CCEEEEEETTEEEEEEC-----CSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             CCEEEEEECCCcccccc-----cccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecc
Confidence            35789999887664311     111112256899999999999999999998642   334556666653

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=98.67  E-value=1.6e-07  Score=55.80  Aligned_cols=55  Identities=18%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             CCcEEEEEeC-----CEE-EEecc--c--c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAI-LTAGS--T--K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~-l~~~~--~--~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....|.|+|.     ... +....  .  .  ....+||++.     .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        30 ~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  101 (137)
T 1rjc_A           30 SSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADTS  101 (137)
T ss_dssp             TCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             CCcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            4578999982     222 32211  0  0  1235799886     3479999999999999999999864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.66  E-value=1.9e-08  Score=64.95  Aligned_cols=60  Identities=13%  Similarity=0.257  Sum_probs=40.3

Q ss_pred             eccCCCCcEEEEEeCC------EEEEec-c-----cccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRGI------AILTAG-S-----TKVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~------~~l~~~-~-----~~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +|.+.....|.|+|..      .++... .     ......+||.+..     .++|.|.+++.+|+|.|+|.+.+.
T Consensus        25 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           25 SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSS
T ss_pred             eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            4444455789998721      222222 1     0112357998872     268999999999999999999875

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.11  E-value=2.6e-09  Score=60.79  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             CcEEEEEeCC------EEEEeccc-ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI------AILTAGST-KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~------~~l~~~~~-~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|+.      .++..... ....++||++..     +++|+|.+++.+|+|.|.|.+.+.
T Consensus        28 ~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (110)
T 1u3h_A           28 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASAN   93 (110)
Confidence            4679999842      12222211 123567998753     479999999999999999999874

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.66  E-value=6.5e-08  Score=60.59  Aligned_cols=38  Identities=24%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      .+++|.|.+|+.+|+|.|+|.+.+.. ..+..+.|.|.+
T Consensus        80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  118 (248)
T 3pv7_A           80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA  118 (248)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEec
Confidence            46789999999999999999999764 556777787764

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.66  E-value=8.5e-08  Score=60.05  Aligned_cols=52  Identities=19%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             cEEEEEeC-----C-EEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----I-AILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~-~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.     . .++.........++||++.     ...+|+|.+++.+|+|.|.|.+..
T Consensus        29 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   91 (200)
T 2nw2_A           29 NGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQA   91 (200)
T ss_dssp             CCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC-
T ss_pred             ceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEc
Confidence            46999872     1 3334332211126899986     357999999999999999999975

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=98.66  E-value=1.4e-07  Score=54.37  Aligned_cols=31  Identities=16%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||++.     ..++|+|.+++.+|+|.|.|.+.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~  100 (122)
T 1xiw_D           65 KDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSG  100 (122)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCHHHCEEEEEEEec
Confidence            5799986     347999999999999999999986

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.65  E-value=4.1e-08  Score=61.68  Aligned_cols=67  Identities=19%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             CCcEEEEEeC-----CE-EEEeccccc-----CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc---CC--ce
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGSTKV-----TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL---EP--KE   68 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~~~~-----~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~---~~--~~   68 (78)
                      +...|.|+|+     .. ++.......     ...+||++.     .+++|+|.+++.+|+|.|.|.+.+.   ..  ..
T Consensus        31 ~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~  110 (230)
T 1ypz_F           31 RSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFA  110 (230)
T ss_dssp             GGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEEC
T ss_pred             CccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccC
Confidence            3467999982     12 333322110     146899886     3469999999999999999999974   11  12


Q ss_pred             EEEEEEEE
Q psy14103         69 ITHTLEIL   76 (78)
Q Consensus        69 ~~~~L~V~   76 (78)
                      ..+.|.|.
T Consensus       111 ~~~~L~V~  118 (230)
T 1ypz_F          111 EGTKLIVI  118 (230)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEe
Confidence            33467775

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.65  E-value=5.1e-08  Score=57.73  Aligned_cols=52  Identities=10%  Similarity=0.061  Sum_probs=39.6

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +.+.|+|++..+...            ..+..|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|
T Consensus       116 ~~~~W~~~g~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          116 VKVTFFQNGKSQKFS------------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEETTEEEEEE------------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ceEEEEECCeEcccc------------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            689999988776431            135679999999999999999999864  2445555555

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.65  E-value=2.9e-07  Score=56.77  Aligned_cols=33  Identities=18%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             CCCCEEEE---cC-eEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV---DG-YNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~---~~-~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.   .+ ++|+|.+++.+|+|.|+|.+...
T Consensus        76 ~~~Rfs~s~~~~~~~sL~I~~vq~eDsG~YyCa~~~~  112 (166)
T 3dmm_C           76 SSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN  112 (166)
T ss_dssp             SCCSEEEECSTTTEEEEEESSCCTTTCEEEEEEEESS
T ss_pred             cccceEEEcCCCCEEEEEECCCChhhCEEEEEEECCC
Confidence            37899987   23 88999999999999999998753

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.65  E-value=1.3e-07  Score=57.21  Aligned_cols=62  Identities=8%  Similarity=0.179  Sum_probs=41.8

Q ss_pred             cEEEEEeCC-EEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-C--ceEEEEEEE
Q psy14103         12 YVLAWKRGI-AILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-P--KEITHTLEI   75 (78)
Q Consensus        12 ~~v~W~k~~-~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~--~~~~~~L~V   75 (78)
                      ..+.|.++. ..+.........++++.+.  ..|.|.+++.+|+|.|+|.|.|.. .  .+..++|+|
T Consensus       152 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V  217 (225)
T 4fmk_A          152 ARITWISSLGGEAKDTQEPGIQAGTVTII--SRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV  217 (225)
T ss_dssp             CEEEEECSSCCEEEEEEEECSSTTCEEEE--EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred             CEEEEEECCccccCCcceEEecCCCEEEE--EEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence            578999864 3333322223455666543  479999999999999999999863 3  345555555

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=98.65  E-value=2.6e-07  Score=55.47  Aligned_cols=54  Identities=17%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             CCcEEEEEeC-----CE-EEEecc--c----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGS--T----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~--~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.     .. ++....  .    .....+||++.     ...+|+|.+++.+|+|.|.|.+.+
T Consensus        30 ~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~  100 (148)
T 1jtp_A           30 GPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSLEPEDTAIYYCAADS  100 (148)
T ss_dssp             CCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCChhHCEEEEEEEEc
Confidence            4568999982     22 333221  0    01135799986     247999999999999999999986

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=98.65  E-value=9.2e-08  Score=56.44  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=27.7

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~  101 (134)
T 1zvh_A           65 KGRFTVSLDNAENTVYLQMNSLKPEDTALYYCAAARQ  101 (134)
T ss_dssp             BTTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            4799886     3469999999999999999999864

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.65  E-value=1e-07  Score=59.32  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             cEEEEEeC-----CE-EEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----IA-ILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~~-~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..|.|+|.     .. ++..... ....++||++.     .+++|+|.+++.+|+|.|.|.+.+
T Consensus        31 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   94 (194)
T 1lp9_E           31 PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL   94 (194)
T ss_dssp             CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             ceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEec
Confidence            56999872     13 3333221 12346899986     357999999999999999999986

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.64  E-value=7.4e-08  Score=60.50  Aligned_cols=55  Identities=11%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             CCcEEEEEeCC-----EEE-Eeccc--c--cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGI-----AIL-TAGST--K--VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~-----~~l-~~~~~--~--~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|.|+|+.     ..+ .....  .  ....+||.+.    .+++|.|.+++.+|+|.|+|.+.+.
T Consensus        26 ~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   94 (238)
T 1bec_A           26 NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGG   94 (238)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESC
T ss_pred             CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEEEEEecC
Confidence            35789999831     222 21111  0  0135899886    3479999999999999999999975

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.64  E-value=3.2e-09  Score=68.83  Aligned_cols=57  Identities=18%  Similarity=0.334  Sum_probs=0.0

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.|.|+|++..+.       .+.|+.+ .+.+|.|.+++.+|+|.|+|.+.+.+..+..+.|.|.
T Consensus        39 ~~v~W~k~g~~~~-------~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~   95 (334)
T 1ry7_B           39 GPTVWVKDGTGLV-------PSERVLV-GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVT   95 (334)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cceEEEECCeeCC-------CcccEEe-ccceEEEeecccccCEEEEEEEEeCCeEEEEEEEEEe
Confidence            5799999877664       3467755 5679999999999999999999986545555666654

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.64  E-value=1.4e-07  Score=60.03  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=39.8

Q ss_pred             eccCCCCcEEEEEeC-----CEEE-Eeccc------ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          5 SGLPDKNYVLAWKRG-----IAIL-TAGST------KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~-----~~~l-~~~~~------~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++.+.....|.|+|.     ...+ .....      .....+||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        48 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  124 (256)
T 3sob_H           48 SGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSG  124 (256)
T ss_dssp             ESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             eccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecC
Confidence            443444578999872     1222 22110      11235899886     3467999999999999999999863

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.64  E-value=6.2e-08  Score=58.73  Aligned_cols=52  Identities=15%  Similarity=0.095  Sum_probs=38.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~   76 (78)
                      ...+.|+|++..              ....+.+|.|.+++.+|+|.|+|.+.+..   ..+..+.|.|.
T Consensus        35 ~~~~~W~k~g~~--------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~   89 (184)
T 2gi7_A           35 VDLYRLEKLSSS--------------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVAT   89 (184)
T ss_dssp             CSEEEEEETTTC--------------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEE
T ss_pred             CCEEEEEECCcc--------------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEec
Confidence            468899987542              13467899999999999999999999853   33455666664

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=98.63  E-value=1.7e-07  Score=64.36  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC---ceEEEEEEEE
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP---KEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~L~V~   76 (78)
                      .+|+++.     ++.+|+|++++.+|+|.|+|.+.+.+.   .....+|.|.
T Consensus       453 ~~R~~~~~~~~~~~~sL~I~~v~~~D~g~Y~C~v~~~~~~~~~~~~l~l~V~  504 (507)
T 3oai_A          453 KERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  504 (507)
T ss_dssp             TTTEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             cceEEEecCCCCCceeEEECCCCcccCeEEEEEEEcCCCcCCceeEEEEEEe
Confidence            5788876     347999999999999999999987542   2344455554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.63  E-value=8e-08  Score=59.76  Aligned_cols=53  Identities=23%  Similarity=0.386  Sum_probs=37.6

Q ss_pred             cEEEEEeCC-----E-EEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGI-----A-ILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~-----~-~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.|.|+|+.     . ++..... ....++||.+.     ...+|.|.+++.+|+|.|+|.+.+.
T Consensus       157 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          157 DYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            689999842     2 2222111 11245789875     2479999999999999999999985

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.63  E-value=1.3e-07  Score=59.85  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccCC----ceEEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLEP----KEITHTLEIL   76 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~----~~~~~~L~V~   76 (78)
                      ..++|.|.+++.+|+|.|+|++.+...    ....+.|.|.
T Consensus        77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~  117 (259)
T 3omz_A           77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVT  117 (259)
T ss_dssp             CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEE
T ss_pred             CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEe
Confidence            457899999999999999999987532    2233455554

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.63  E-value=8.5e-08  Score=59.42  Aligned_cols=49  Identities=18%  Similarity=0.320  Sum_probs=37.6

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      .|.|+|++..+..+              ..+|.|.+++.+|+|.|+|.+.+. ..+..+.|.|.
T Consensus        39 ~v~W~k~g~~l~~~--------------~~~L~i~~v~~~D~G~Y~C~a~n~-~~s~~~~l~V~   87 (204)
T 3sgj_C           39 STQWFHNESLISSQ--------------ASSYFIDAATVDDSGEYRCQTQLS-TLSDPVQLEVH   87 (204)
T ss_dssp             CEEEEETTEEESCC--------------SSEEEESSCCGGGCEEEEEEETTS-BCCCCEEEEEE
T ss_pred             EEEEEECCEEcccC--------------ccEEEEecccccCCEEEEEEeCCC-cccccEEEEEe
Confidence            48999998876421              279999999999999999999873 34445566664

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.63  E-value=2.1e-07  Score=53.27  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             CCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.   ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cccEEEEecCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            5899875   4578999999999999999999864

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.63  E-value=9.1e-08  Score=59.76  Aligned_cols=52  Identities=25%  Similarity=0.438  Sum_probs=37.2

Q ss_pred             cEEEEEeC---C---EEEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG---I---AILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~---~---~~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..|.|+|.   .   .++..... ....++||++.     .+.+|+|.+++.+|+|.|.|.+.+
T Consensus        30 ~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~   93 (203)
T 2bnu_A           30 YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (203)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEc
Confidence            47999872   1   23333221 11236899986     357999999999999999999986

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.62  E-value=1.9e-07  Score=54.29  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             cEEEEEeC-----CEEE-Eeccc----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRG-----IAIL-TAGST----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~-----~~~l-~~~~~----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|+|.     ...| .....    .....+||++.    ...+|+|.+++.+|+|.|.|.+...
T Consensus        35 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           35 NNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGGG  101 (125)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            48999982     1333 32211    11235799875    4689999999999999999998753

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.62  E-value=2.5e-07  Score=58.57  Aligned_cols=55  Identities=13%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             CCcEEEEEeCC-----EEE-Eecccc----cCCCCCEEEEc----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGI-----AIL-TAGSTK----VTPDKRIQLVD----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~-----~~l-~~~~~~----~~~~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...|.|+|+.     ..+ ...+..    ....+||.+..    +++|.|.+++.+|+|.|+|.+.+.
T Consensus        30 ~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   98 (252)
T 1oga_E           30 NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSR   98 (252)
T ss_dssp             CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESS
T ss_pred             CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecC
Confidence            35789999831     223 221111    01358998863    479999999999999999999875

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.62  E-value=1.1e-07  Score=59.88  Aligned_cols=61  Identities=21%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             EeccCCCCcEEEEEeC--CE---EE-Eec-cc-----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--IA---IL-TAG-ST-----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~---~l-~~~-~~-----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|+  +.   .+ ... ..     .....+||.+..     ..+|+|.+++.+|+|.|+|.+.+.
T Consensus       158 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          158 ASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             EESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            3454544679999984  21   11 111 00     012346998762     456999999999999999999985

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.62  E-value=4.7e-08  Score=62.99  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=42.5

Q ss_pred             cEEEEEe--CCE---EEEe-ccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         12 YVLAWKR--GIA---ILTA-GST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k--~~~---~l~~-~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ..|.|+|  ++.   .+.. ... ....++||.+.   ..++|+|.+++.+|+|.|+|.+.+..  .-.....|.|.+
T Consensus       191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            4789998  332   2221 111 11236899865   45789999999999999999998743  223445666643

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.62  E-value=7.6e-08  Score=61.28  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             CEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         35 RIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        35 R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ||.+.    .+++|+|.+|+.+|+|.|+|.+.+
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~  122 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSL  122 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEES
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEec
Confidence            88876    368999999999999999999985

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.61  E-value=1.4e-07  Score=59.35  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=27.7

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++||.+.     ...+|.|.+++.+|+|.|+|.+.+.
T Consensus       186 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          186 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            6799876     2369999999999999999999873

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.61  E-value=1.2e-07  Score=60.20  Aligned_cols=61  Identities=21%  Similarity=0.418  Sum_probs=40.3

Q ss_pred             EeccCCCCcEEEEEeC----C-EEE-Eec--cc----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AIL-TAG--ST----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~l-~~~--~~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.....|.|+|.    . ..+ ...  +.    .....+||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (253)
T 3liz_H           24 ASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPA  101 (253)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCB
T ss_pred             eeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            3443444578999982    1 222 211  10    01245899886     3467999999999999999999875

>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H

Probab=98.61  E-value=1.9e-07  Score=56.49  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ..++|+|.+++.+|+|.|.|.+...
T Consensus        64 ~~~Rfs~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  101 (153)
T 2vyr_E           64 VKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCAKPWY  101 (153)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             cCCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            35799986     3579999999999999999998753

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=98.61  E-value=2.8e-07  Score=58.36  Aligned_cols=54  Identities=28%  Similarity=0.338  Sum_probs=38.3

Q ss_pred             CcEEEEEeCC------EEEEecccc-cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI------AILTAGSTK-VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~------~~l~~~~~~-~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|..      .++...... ....+||++.     .+.+|+|.+++.+|+|.|.|.+...
T Consensus        29 ~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~   94 (215)
T 1oga_D           29 FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGS   94 (215)
T ss_dssp             CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             CceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEecc
Confidence            4579998821      234433221 1236899986     3579999999999999999999853

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.61  E-value=4.7e-08  Score=63.52  Aligned_cols=64  Identities=16%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ..+.|.|+|++..+....   ....|+.. .+++|.|.+++.+|+|.|+|.+.+.. ..+..+.|.|..
T Consensus        53 p~~~v~W~k~~~~~~~~~---~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~  117 (339)
T 3o4o_C           53 PRINLTWHKNDSARTVPG---EEETRMWA-QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFE  117 (339)
T ss_dssp             SCCBCCCEESSCCSCCSC---CSSSCEEE-ETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEEC
T ss_pred             CCceEEEEECCCCcccCc---cccccEEe-eCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEc
Confidence            345889999765532111   12457754 56799999999999999999999763 567777887764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.61  E-value=2.1e-07  Score=63.90  Aligned_cols=65  Identities=14%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             CcEEEEEeCC-----EEE-Eecc-cccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEE
Q psy14103         11 NYVLAWKRGI-----AIL-TAGS-TKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~~-----~~l-~~~~-~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V   75 (78)
                      .+.|.|+|+.     ..+ .... .....++||...   ...+|.|.+++.+|+|.|+|.+.+..    ..+..+.|.|
T Consensus        29 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V  107 (523)
T 2rcj_C           29 SITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTV  107 (523)
T ss_pred             CceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEe
Confidence            4689999853     222 2111 111235789865   34689999999999999999999853    1234456666

>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D

Probab=98.60  E-value=3.4e-07  Score=54.64  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=38.4

Q ss_pred             CCcEEEEEeC-----CE-EEEec--cc----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IA-ILTAG--ST----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~--~~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.     .+ ++...  +.    .....+||++.     .+.+|+|.+++++|+|.|.|.+.+.
T Consensus        32 ~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~Dsg~Y~C~~~~~  103 (137)
T 3lh2_H           32 STYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGT  103 (137)
T ss_dssp             TTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             cccEEEEEEECCCCCCEEEEEEEcCCCccccCcccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEEEC
Confidence            3467999972     23 33421  11    11235899886     3578999999999999999999864

>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}

Probab=98.60  E-value=1.6e-07  Score=55.44  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             CcEEEEEeC-----CE-EEEeccc-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IA-ILTAGST-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     .+ ++...+.     .....+||++.     ...+|+|.+++++|+|.|.|.+..
T Consensus        31 ~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~Y~Ca~~~   99 (127)
T 3k81_A           31 SEAWGWYRRAPGKQRELIAAINNEGRTNYVDSVKGRFTVSRDNAKNVMYLQMNSLKPEDTAVYYCNANL   99 (127)
T ss_dssp             SSCEEEEEECSSSCEEEEEEECSSCCEEECTTTTTTCEEEEETTTTEEEEEEESBCTTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCCCEEEEEEECCCceEcCCcccCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEee
Confidence            467999982     13 3333111     11246899886     357899999999999999999875

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.60  E-value=1.8e-08  Score=61.34  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=40.8

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~   76 (78)
                      ...+.|+|++..+.....     .+.......+|.|.+++.+|+|.|+|.+.+..   ..+..+.|.|.
T Consensus        32 ~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~   95 (196)
T 3p2t_A           32 AREYRLDKEESPAPWDRQ-----NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT   95 (196)
T ss_dssp             CCEEEEEETTSCSCSEEE-----CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEE
T ss_pred             CCEEEEEECCCCCccccc-----ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEec
Confidence            468899997755432100     01111246899999999999999999999753   33556666664

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.60  E-value=4.9e-08  Score=55.81  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             CcEEEEEeCC----EEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGI----AILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~----~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ...|.|+|+.    .++......  ..+|+...        ...+|+|.+++.+|+|.|.|.+.+..
T Consensus        37 ~~~v~W~r~~~~~~~~i~~~~~~--~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           37 VGPIKWYRGVGQSRLLIYSFTGE--HFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQKG  101 (120)
T ss_dssp             CCCEEEEESSSTTCEEEEEECEE--CTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEECC
T ss_pred             CcEEEEEcCCCCCcEEEEEcCCc--ccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcCC
Confidence            3579999953    344322111  22455421        24789999999999999999998653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.60  E-value=2e-07  Score=63.67  Aligned_cols=61  Identities=21%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .+.|.|++++..+..... ...+.|+    ..+|.|.+|+.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        77 ~p~i~W~~~~~~l~~~~~-~~~~~~~----~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  138 (423)
T 3qs7_E           77 NISCLWVFKHSSLNCQPH-FDLQNRG----VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR  138 (423)
T ss_dssp             SCEEEEEETTEEECCCCB-C-----C----EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC
T ss_pred             CCeEEEEECCCccCccce-eccccce----EEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            468999998766542110 1112222    247999999999999999999986 455667777764

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.60  E-value=8.1e-08  Score=63.23  Aligned_cols=53  Identities=36%  Similarity=0.530  Sum_probs=41.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCC-CCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-TDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~   64 (78)
                      ++|.|.  +.+.|+|++..+..+     .+.|+.+. +++|.|.++.. +|+|.|+|.+.+.
T Consensus        31 ~~g~p~--~~v~W~k~g~~~~~~-----~~~~~~~~-~~~L~i~~~~~~~D~G~Y~C~a~n~   84 (382)
T 1cs6_A           31 ARANPP--ATYRWKMNGTELKMG-----PDSRYRLV-AGDLVISNPVKAKDAGSYQCVATNA   84 (382)
T ss_dssp             EEEESC--CEEEEEETTEECCCS-----TTSSEEEE-TTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             ecCCCC--CEEEEEECCEECCcC-----CCccEEee-CCeEEEecccccccCEEEEEEEEcC
Confidence            345544  589999998877542     35788765 57999999997 9999999999985

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.59  E-value=2e-07  Score=55.67  Aligned_cols=53  Identities=21%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             CcEEEEEeC---C--E-EEEec--ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG---I--A-ILTAG--STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~---~--~-~l~~~--~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|+|.   .  . ++...  ......++||++.     ..++|+|.+++.+|+|.|.|.+..
T Consensus        30 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   95 (142)
T 2ol3_A           30 SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   95 (142)
T ss_dssp             SCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCTTTCEEEEEEEEC
T ss_pred             CceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence            357999982   1  2 33332  1111236899984     457999999999999999999986

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.59  E-value=1.5e-07  Score=58.95  Aligned_cols=61  Identities=23%  Similarity=0.303  Sum_probs=40.2

Q ss_pred             EeccCCCCcEEEEEeC-----CEEE-Eecc-c-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAIL-TAGS-T-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~l-~~~~-~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +++.+.+...|.|+|.     ...+ .... .     .....+||.+.     .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (226)
T 3mlr_H           24 SSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYL  101 (226)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEE
T ss_pred             ecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccC
Confidence            3444444578999982     1232 2211 0     11235899886     3467999999999999999999753

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.59  E-value=3.2e-08  Score=62.09  Aligned_cols=58  Identities=14%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             ccCCCCcEEEEEeC--C---EEE-Eec--cc----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          6 GLPDKNYVLAWKRG--I---AIL-TAG--ST----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         6 ~~~~~~~~v~W~k~--~---~~l-~~~--~~----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      |.+...+.|.|+|+  +   ..+ ...  +.    .....+||.+..     ..+|+|.+++.+|+|.|+|.+.+
T Consensus       157 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          157 GYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             STTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            33434679999985  2   112 111  00    112348998873     34899999999999999999996

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.59  E-value=1.6e-07  Score=60.33  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             CCCEEEEc----CeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLVD----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~~----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||.+..    +.+|.|.+++.+|+|.|+|.+.+
T Consensus        87 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D           87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARD  121 (279)
T ss_dssp             SSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcc
Confidence            57998863    46999999999999999999998

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.59  E-value=3.6e-08  Score=56.73  Aligned_cols=52  Identities=23%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             CcEEEEEeCC----EEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGI----AILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~----~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|.|+|+.    ..+...  .....+|+++.        .+.+|+|.+++.+|+|.|.|.+...
T Consensus        40 ~~~v~W~r~~~~~g~~~~~~--~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  103 (120)
T 3noi_A           40 IGSVTWFRDEVVPGKEVRNG--TPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL  103 (120)
T ss_dssp             CEEEEEEESSCSTTCBCCTT--CTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGCEEEEEEEEET
T ss_pred             eeEEEEEeccCCCCceeccc--ccccCCcEEeecccccccCCcEEEEEecCChhhCEEEEEEEEEC
Confidence            4679999854    333211  11245788764        2469999999999999999999854

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.59  E-value=9.3e-08  Score=57.32  Aligned_cols=49  Identities=18%  Similarity=0.344  Sum_probs=37.1

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      .+.|+|++..+..              .+.+|.|.+++.+|+|.|+|.+.+.. .+..++|.|.
T Consensus        39 ~~~W~~~~~~~~~--------------~~~~L~i~~~~~~d~G~Y~C~~~n~~-~s~~~~l~V~   87 (175)
T 1fnl_A           39 STQWFHNESLISS--------------QASSYFIDAATVNDSGEYRCQTNLST-LSDPVQLEVH   87 (175)
T ss_dssp             CCEEEETTEEEES--------------SCSEEEESSCCGGGCEEEEEECSSSC-CCCCEEEEEE
T ss_pred             ceEEEECCEEccC--------------CceEEEEeCCCcccCEEEEEEeeCCc-ccccEEEEEe
Confidence            4689998876641              35699999999999999999999742 3445556554

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=98.58  E-value=1.3e-07  Score=54.14  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   99 (115)
T 3k74_B           62 VKGRFTISRDNAKNTLYLQMNSLTSEDTAVYYCAKDWA   99 (115)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESTT
T ss_pred             ccccEEEEEcCCCCEEEEEECCCChHhCEEEEEEEEcC
Confidence            35899886     2578999999999999999999863

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.58  E-value=1.7e-07  Score=65.84  Aligned_cols=60  Identities=25%  Similarity=0.366  Sum_probs=47.1

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~V~   76 (78)
                      ..+.+.|+|++..+.       ...|+.+. ++.+|.|.+++.+|+|.|+|.+.|.. . .+..+.|.|.
T Consensus       494 ~~~~i~W~~~g~~l~-------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  556 (642)
T 1e07_A          494 QNTTYLWWVNGQSLP-------VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL  556 (642)
T ss_pred             CCcEEEEEECCEeCC-------CCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEE
Confidence            457899999988774       35678775 46799999999999999999999863 2 3446777775

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.58  E-value=7.5e-08  Score=60.86  Aligned_cols=65  Identities=26%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             cEEEEEeC---C--E-EEEeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEE
Q psy14103         12 YVLAWKRG---I--A-ILTAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~---~--~-~l~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~   76 (78)
                      +.|.|+|+   .  . ++..... .....+||.+.   ...+|+|.+++.+|+|.|+|.+.+...  -.....|.|.
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            47999982   2  2 2221111 11235799875   456799999999999999999997532  2345566664

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.58  E-value=3.5e-08  Score=60.37  Aligned_cols=60  Identities=13%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.++....|.|+|++..+..+...   ...+.+|.+  ...|+|.+++.+|+|.|+|.+.+..
T Consensus       138 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~G~Y~C~a~n~~  200 (213)
T 3mj8_L          138 INGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMA--TSYLTMTADAWKSRNTFICKVTHGG  200 (213)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEE--EEEEEEESHHHHSCSCEEEEEEETT
T ss_pred             eeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEE--EEEEEEeHHHcCCCCEEEEEEEECC
Confidence            34544444689999998887543211   013445544  3579999999999999999999864

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.58  E-value=3.6e-07  Score=58.59  Aligned_cols=45  Identities=18%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             CCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         32 PDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        32 ~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ...|+.+.    .+++|.|.+++.+|+|.|+|++.+.+  ..+..+.+.+.
T Consensus        60 ~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~  110 (308)
T 4fom_A           60 YQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVL  110 (308)
T ss_dssp             TTTTEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ccceEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEee
Confidence            35677664    46789999999999999999998753  44455555543

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=98.58  E-value=3.1e-07  Score=57.80  Aligned_cols=52  Identities=23%  Similarity=0.446  Sum_probs=37.2

Q ss_pred             cEEEEEeC-----CE-EEEeccccc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----IA-ILTAGSTKV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~~-~l~~~~~~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.     .. ++.......  ...+||++.     ...+|+|.+++.+|+|.|.|.+..
T Consensus        34 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (211)
T 2ak4_D           34 YYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSG   98 (211)
T ss_dssp             CEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEc
Confidence            47999882     12 333322111  136899986     347999999999999999999986

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.58  E-value=3.3e-08  Score=60.54  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++..+.|.|+|++..+..+...   . ..+. |.+.  ..|.|.+++.+|+|.|+|.+.+..
T Consensus       137 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~~--s~L~i~~~~~~d~G~Y~C~a~n~~  199 (212)
T 1nfd_E          137 VNDFYPGSATVTWKANGATINDGVKTTKPSKQGQN-YMTS--SYLSLTADQWKSHNRVSCQVTHEG  199 (212)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSC-EEEE--EBCCEEHHHHHTCSCEEEEEECTT
T ss_pred             EEeeECCccEEEEEECCeEcCCCeecCCceecCCC-ceEE--EEEEEchhhcCCCCeEEEEEEeCC
Confidence            45554445789999999888654221   0 1233 5443  679999999999999999999864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.58  E-value=9.9e-08  Score=59.01  Aligned_cols=57  Identities=16%  Similarity=0.176  Sum_probs=42.1

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C-CceEEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E-PKEITHTLEIL   76 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~L~V~   76 (78)
                      .|.|.  +.+.|+|++..+..+             ...+|.|.+++.+|+|.|+|.+.+. + ..+..+.|.|.
T Consensus       143 ~g~p~--~~v~W~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          143 VGSPI--PHYQWFKNELPLTHE-------------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EBSSC--CEEEEEETTEECTTC-------------CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             cccCC--CeEEEEECCEECCCC-------------CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            45544  479999988776421             2358999999999999999999985 3 34566666664

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.58  E-value=8.8e-08  Score=60.54  Aligned_cols=55  Identities=22%  Similarity=0.392  Sum_probs=38.2

Q ss_pred             CcEEEEEe---CC--EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKR---GI--AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k---~~--~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.|.|+|   +.  ..+......  ....+||.+.   ...+|.|.+++.+|+|.|+|.+.+..
T Consensus       179 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          179 SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            36899988   21  323222111  1246899875   45679999999999999999999753

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=98.58  E-value=4.8e-07  Score=52.49  Aligned_cols=44  Identities=30%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC--Cc--eEEEEEEEE
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE--PK--EITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~--~~~~~L~V~   76 (78)
                      .+||++.     ...+|+|.+++.+|+|.|.|.+....  ..  ...++|.|.
T Consensus        62 ~~Rfs~~~~~~~~~~~LtI~~l~~~Dsg~Y~C~~~~~~~~~~~~~~~v~L~V~  114 (119)
T 1smo_A           62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT  114 (119)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSCCEECSCEEEEEC-
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCCcceEEEEEEEEEE
Confidence            4899986     34689999999999999999998643  22  245666653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.58  E-value=3.1e-07  Score=62.75  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=45.6

Q ss_pred             eccCCCCcEEEEEeCC-----EEE-Eec--cc----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccCC-
Q psy14103          5 SGLPDKNYVLAWKRGI-----AIL-TAG--ST----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLEP-   66 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~-----~~l-~~~--~~----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~~-   66 (78)
                      +|.+.+...|.|+|+.     ..+ ...  +.    .....+||++..     +++|.|.+++.+|+|.|+|.+.+... 
T Consensus        26 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  105 (475)
T 1iga_A           26 SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGG  105 (475)
T ss_pred             cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCC
Confidence            4444345689999831     222 211  00    012357998763     47999999999999999999997531 


Q ss_pred             ------ceEEEEEEEE
Q psy14103         67 ------KEITHTLEIL   76 (78)
Q Consensus        67 ------~~~~~~L~V~   76 (78)
                            ....+.|.|.
T Consensus       106 ~~~~~~~~~~~~l~V~  121 (475)
T 1iga_A          106 KSEFDYWGQGTLVTVS  121 (475)
T ss_pred             ccceeeecCceEEEec
Confidence                  2234566664

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.57  E-value=2e-07  Score=60.45  Aligned_cols=52  Identities=25%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             EEEEEeC--C---EEEE-ecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         13 VLAWKRG--I---AILT-AGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        13 ~v~W~k~--~---~~l~-~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .|.|+|+  +   ..+. ..... ...++||.+.   ...+|+|.+++.+|+|.|+|.+.+.
T Consensus       196 ~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          196 YLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            7999984  1   2222 11111 1136799875   3468999999999999999999974

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.57  E-value=7.5e-08  Score=69.23  Aligned_cols=69  Identities=16%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|..  .|.|+|++..+...........++.+ .+++|.|.+++.+|+|.|+|.+.|. +.....+.+..
T Consensus       738 ~~g~P~p--~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~  807 (816)
T 3dmk_A          738 ADGFPKP--QVTWKKAVGDTPGEYKDLKKSDNIRV-EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS  807 (816)
T ss_dssp             EEEESCC--EEECCEECSSSTTCCBCCCCBTTEEE-ETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEE
T ss_pred             EecCCCC--eEEEEecCCCCCccccccccCCCEEe-cCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEE
Confidence            4566654  79999965433221112233456654 5679999999999999999999987 56666666544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.57  E-value=1.9e-08  Score=61.39  Aligned_cols=60  Identities=12%  Similarity=0.123  Sum_probs=40.1

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      .+.|+|++..+.....     .+.....+.+|.|.+|+.+|+|.|+|.+.+..   ..+..+.|.|.+
T Consensus        34 ~~~W~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           34 EYRLVKEGSPEPWDTQ-----NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             EEEEEETTCSSCSEEE-----CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEEC
T ss_pred             EEEEEECCCCCCcccc-----cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecC
Confidence            8999997754432110     01111256799999999999999999998753   224556676654

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.57  E-value=2.8e-07  Score=58.14  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=43.1

Q ss_pred             cEEEEEeC---C--EEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         12 YVLAWKRG---I--AILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~---~--~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ..|.|+|+   .  ..+......  ....+||.+.   ..++|+|.+++.+|+|.|+|.+.+..  .-.....|.|.+
T Consensus       167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence            37999982   1  222222211  1245788775   35689999999999999999998753  334455566643

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.57  E-value=1.7e-07  Score=58.75  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             CCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++||.+..     .++|.|.+++.+|+|.|+|.+.+.
T Consensus       192 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          192 KGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            57998752     469999999999999999999984

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=98.57  E-value=1.8e-07  Score=53.98  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=28.2

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ...+|+|.+++++|+|.|.|.+...
T Consensus        64 ~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3iy0_H           64 FGGAAALAAAAAGGTAYMGLGGLSSEDSGVYFCARRGF  101 (120)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             hcCcEEEEEecCCCEEEEEECCCChHHCEEEEEEEEeC
Confidence            35899886     3579999999999999999998753

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.57  E-value=9.6e-08  Score=62.29  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=44.2

Q ss_pred             CcEEEEEeCCE----EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIA----ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~----~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .+.|.|+|++.    ......  .....|+.. .+.+|.|.+++.+|+|.|+|.+.+. ...+..+.|.|..
T Consensus        47 ~~~i~W~k~~~~~~~~~~~~~--~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~  115 (349)
T 4dep_C           47 GLTLIWYWTRQDRDLEEPINF--RLPENRISK-EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ  115 (349)
T ss_dssp             TCEEEEEEEESSCCCEEECCC--CCGGGCEEE-ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CceEEEEECCCCCcccccccc--cccCceEee-cCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEec
Confidence            47899999652    111100  012356644 4569999999999999999999986 3566777788764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.57  E-value=9.4e-08  Score=57.57  Aligned_cols=33  Identities=18%  Similarity=0.457  Sum_probs=27.0

Q ss_pred             CCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         33 DKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        33 ~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ..|+.+.      .+++|.|.+++.+|+|.|+|.+.+..
T Consensus        64 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~  102 (218)
T 4frw_A           64 EGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFP  102 (218)
T ss_dssp             TTTEECCSSCCCTTBCCEEESSCCGGGCEEEEEEEEEET
T ss_pred             cceEEEecccccCCeEEEEEeeccHHHCCceeEEEEecc
Confidence            4566654      35789999999999999999998754

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.57  E-value=3.1e-07  Score=64.45  Aligned_cols=60  Identities=20%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      +.+.|.|+|++..+.       .+.|+.+. .+.+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus       138 p~~~v~W~~~g~~l~-------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  200 (642)
T 1e07_A          138 QDATYLWWVNNQSLP-------VSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL  200 (642)
T ss_pred             CCeeEEEEECCeECC-------CCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEE
Confidence            357899999887764       35677765 46799999999999999999999763  34566777775

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.56  E-value=2.7e-07  Score=57.20  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=37.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.- +.+.|.|+|++..+...           ...+.+|.|.+++.+|+|.|+|.+.+..
T Consensus        23 L~C~~-p~~~i~W~k~g~~l~~~-----------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~   72 (204)
T 1sy6_A           23 LTCDA-EAKNITWFKDGKMIGFL-----------TEDKKKWNLGSNAKDPRGMYQCKGSQNK   72 (204)
T ss_dssp             EEECS-CSSEEEEEETTEEEEEE-----------ESSCCCEEEEEGGGCCEEEEEEESSSSC
T ss_pred             EEEcC-CCCEEEEEECCEECCCC-----------CCCCCeEEeCCCCcCCCEEEEEEecCCC
Confidence            34443 45789999998877532           1145689999999999999999976543

>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1

Probab=98.56  E-value=2e-07  Score=55.97  Aligned_cols=55  Identities=20%  Similarity=0.394  Sum_probs=37.5

Q ss_pred             CcEEEEEeC-----CEEE-Eec-cc----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRG-----IAIL-TAG-ST----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~-~~----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ...+.|+|.     .+.| ... ..    .....+||++.     ...+|+|.+++++|+|.|.|.+...+
T Consensus        33 ~~~v~WyrQ~~g~~p~~L~~~~~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCav~~~~  103 (139)
T 3g9a_B           33 SYSMAWFRQAPGKECELVSNILRDGTTTYAGSVKGRFTISRDDAKNTVYLQMVNLKSEDTARYYCAADSGT  103 (139)
T ss_dssp             GSEEEEEEECTTSCEEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEC-CEESSC
T ss_pred             CcEEEEEEECCCCCcEEEEEEECCCCEEcCCccCCCEEEEECCCCCEEEEEECCCCHHHCEEEEEEEEeCC
Confidence            468999972     1333 321 11    11245899986     35789999999999999999998654

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.56  E-value=2.4e-07  Score=58.40  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=27.7

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ...+|+|.+++.+|+|.|+|.+.+.
T Consensus        71 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  108 (239)
T 3tv3_H           71 LKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGG  108 (239)
T ss_dssp             TGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             ccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            35799886     3467999999999999999999753

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.56  E-value=1.8e-07  Score=58.41  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=28.1

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     .+.+|+|.+++.+|+|.|.|.+.+.
T Consensus        68 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  105 (232)
T 3qhz_H           68 LKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLR  105 (232)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             ccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeec
Confidence            34799886     3468999999999999999999864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.56  E-value=6.4e-08  Score=58.15  Aligned_cols=48  Identities=25%  Similarity=0.378  Sum_probs=36.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEE-EcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQL-VDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|+|++..+..     ..+.|... ..+.+|.|.+++.+|+|.|+|.+.+.
T Consensus        40 ~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           40 LSYRWLLNEFPVFI-----TMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CEEEEEESSTTCBC-----CCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEG
T ss_pred             eEEEEEECCceeee-----eeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEec
Confidence            68999997644432     12344434 36789999999999999999999974

>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}

Probab=98.56  E-value=1.8e-07  Score=56.43  Aligned_cols=54  Identities=22%  Similarity=0.417  Sum_probs=37.5

Q ss_pred             CcEEEEEeC---C--EEE-Eeccc-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG---I--AIL-TAGST-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~---~--~~l-~~~~~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|.   .  ..| .....     .....+||++.     .+.+|+|.+++.+|+|.|.|.+...
T Consensus        40 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  109 (152)
T 3v0a_C           40 SRYMSWVRQAPGEGFEWVSSIEPSGTAWDGDSAKGRFTTSRDDAKNTLYLQMSNLQPEDTGVYYCATGYR  109 (152)
T ss_dssp             GSCEEEEEECTTSCEEEEEEECTTSCEEECSTTTTTCEEEEETTTTEEEEEEESCCGGGCEEEEEESSSS
T ss_pred             CCeEEEEEECCCCCCEEEEEEeCCCcEecCCcccCcEEEEecCCCCEEEEEECCCCcccCEEEEEEEccC
Confidence            457999972   1  333 32111     11245899886     2478999999999999999998753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.55  E-value=1e-08  Score=62.55  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=41.3

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG   77 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g   77 (78)
                      .+.|+|++..+....     ..+.....+.+|.|.+++.+|+|.|+|.+.+..    ..+..+.|.|.+
T Consensus        34 ~~~W~k~g~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           34 EYRLYREKKTAPWIT-----RIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             CEEEEESSSCCHHHH-----TSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEEC
T ss_pred             EEEEEECCccccccc-----cccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcc
Confidence            589999876553210     111112356899999999999999999998753    345667777754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.55  E-value=2.3e-07  Score=62.93  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=40.9

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eec--cc----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAG--ST----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~--~~----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.+...|.|+|+  +   ..+ ...  +.    .....+||.+..     ..+|.|.+++.+|+|.|+|.+.+.
T Consensus        24 ~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  101 (457)
T 1hzh_H           24 ASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGP  101 (457)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             ecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecC
Confidence            4555534567999983  1   222 221  00    012357998762     368999999999999999999875

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.55  E-value=1.6e-07  Score=59.23  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=41.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++....|.|+|++..+..+ ..    ....++.|...  ..|.|.+++.+|+|.|+|.+.+..
T Consensus       174 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g~Y~C~a~n~~  238 (252)
T 3bkj_L          174 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHNSYTCEATHKT  238 (252)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHHHCCEEEEEEECTT
T ss_pred             EeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEE--EEEEEcchhccCCCeEEEEEEeCC
Confidence            34544444579999998877543 11    11244556443  479999999999999999999864

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.55  E-value=2.4e-07  Score=57.77  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=40.3

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CC---ceEEEEEEEEe
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EP---KEITHTLEILG   77 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~---~~~~~~L~V~g   77 (78)
                      .+.|+|++..+...            .....|.|.+++.+|+|.|+|.+.|. +.   .+..+.|.|.|
T Consensus       206 ~~~w~~~~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~G  262 (262)
T 3rjd_A          206 YFSFYMGSKTLRGR------------NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG  262 (262)
T ss_dssp             EEEEEETTEEEEEE------------ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEEC
T ss_pred             EEEEEeCCcEeccc------------CCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEeC
Confidence            47889988776421            24568999999999999999999976 32   25567777765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.54  E-value=5.2e-08  Score=59.39  Aligned_cols=47  Identities=6%  Similarity=-0.125  Sum_probs=31.5

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|+|++..+.....      +....    ...+|.|.+|+.+|+|.|+|.+.+.
T Consensus       128 ~~~~W~k~g~~~~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  178 (196)
T 2d3v_A          128 DRFILTEEGDHKLSWTL------DSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR  178 (196)
T ss_dssp             SEEEEEEC---CCEEEE------ECEECTTSCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred             CEEEEEccCCccccccc------ccccccCCCceeEEEeeecCcccCeeEEEEEEcc
Confidence            68999998766532110      00111    2379999999999999999999975

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=98.54  E-value=3.1e-07  Score=54.49  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.1

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||++.     ...+|+|.+++.+|+|.|.|.+.+.
T Consensus        68 ~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  105 (136)
T 3tpk_A           68 VKGRFTISQDNAKNTVYLQMNNLKPEDTAMYYCAAAPT  105 (136)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            35899886     3578999999999999999999853

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.54  E-value=1.2e-07  Score=54.46  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             CCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccC------CceEEEEEEEE
Q psy14103         33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLE------PKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~------~~~~~~~L~V~   76 (78)
                      .+|+.+.    .+.+|+|.+++.+|+|.|.|.+....      ..+....|.|.
T Consensus        65 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~L~V~  118 (119)
T 2pnd_A           65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR  118 (119)
T ss_dssp             TTTEEECCSSTTBCCEEESSCCGGGCEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cCcEEEccCCCCCEEEEEccCCcccCEEEEEEEEECcCCCCeEEEEEEEEEEEc
Confidence            4788775    46899999999999999999997631      22455566654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.54  E-value=2e-07  Score=57.59  Aligned_cols=53  Identities=17%  Similarity=0.256  Sum_probs=40.1

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      .+.|.|+|++..+..+             ...+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus        47 ~~~v~W~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~  101 (218)
T 3k0w_A           47 FVQYQWFKMNKEIPNG-------------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC  101 (218)
T ss_dssp             SSEEEEEETTEECTTC-------------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEE
T ss_pred             CCEEEEEECCEECCCC-------------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEE
Confidence            4589999988766321             35689999999999999999999863  22455666665

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.54  E-value=2.4e-07  Score=57.65  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             EeccCCCCcEEEEEeC--C---EEE-Eec--cc----ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG--I---AIL-TAG--ST----KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~---~~l-~~~--~~----~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++|.+.....|.|+|+  +   ..+ ...  +.    .....+||.+..     ..+|.|.+++.+|+|.|+|.+..
T Consensus       143 ~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          143 ASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            4555544468999983  1   111 111  00    011357998763     37899999999999999999984

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.53  E-value=2.4e-08  Score=63.36  Aligned_cols=59  Identities=14%  Similarity=0.044  Sum_probs=44.3

Q ss_pred             cEEEEEeC-CEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         12 YVLAWKRG-IAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~-~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      +.|.|+++ +..+       ....|+.+..+..|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|..
T Consensus       120 ~~v~W~~~~~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          120 AGVSLVRVRGRPL-------MRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             SSEEEEEGGGCCC-------CSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             eeEEEEecCCCcc-------ccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            57999985 4443       24567877777789999999999999999999753  224467777753

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.53  E-value=1.2e-07  Score=58.57  Aligned_cols=60  Identities=12%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             EeccC--CCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLP--DKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~--~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.+  .....|.|+|++..+......   ...+++|..  ..+|.|.+++.+|+|.|+|.+.+..
T Consensus        27 ~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~   91 (207)
T 2vol_A           27 VVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRS--VSELPIMHQDWLNGKEFKCRVNSAA   91 (207)
T ss_dssp             EEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEE--EEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             EeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEE--EEEEEEehhHcCCCCEEEEEEEccC
Confidence            45665  345689999987655322110   012345533  3589999999999999999999863

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.53  E-value=2.3e-07  Score=58.34  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-C--ceEEEEEEEE
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-P--KEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~--~~~~~~L~V~   76 (78)
                      .+|+.+.     .+++|.|.+|+.+|+|.|+|.+.+.. .  .+..+.|.|.
T Consensus        70 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             TTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             cCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            3778764     44899999999999999999998753 3  3455666553

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.53  E-value=1.6e-07  Score=62.82  Aligned_cols=60  Identities=22%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             EeccCCCCcEEEEEeC--CEEEE----ec----cc--ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG--IAILT----AG----ST--KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~~l~----~~----~~--~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++|.|...+.|.|+|+  +..+.    ..    ..  .....+||.+..     ..+|.|.+++.+|+|.|+|.+.|
T Consensus       242 ~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  318 (438)
T 1qgc_4          242 ASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRRE  318 (438)
T ss_dssp             EESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECC
T ss_pred             EcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEc
Confidence            4666654568999984  32221    10    00  012357998763     46999999999999999999997

>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.52  E-value=3.6e-07  Score=55.29  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+||++.     ...+|+|.+++.+|+|.|.|.+..
T Consensus        67 ~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~Y~Ca~~~  103 (149)
T 3u6r_H           67 FQGRLSITADDSTSTAYMELSSLRSEDTAVYFCARVV  103 (149)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCCEEEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            35799986     357999999999999999999976

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.52  E-value=1.7e-07  Score=56.55  Aligned_cols=52  Identities=17%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEI   75 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V   75 (78)
                      .|.|+|++..+...       .+.  ..+.+|.|.+++  |+|.|+|.+.|.. .. +..++|.|
T Consensus       138 ~v~W~~~~~~~~~~-------~~~--~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          138 DLLWLQDAVPLATA-------PGH--GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEEESSCBSSSS-------TTS--SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEECCEeccCC-------CCc--CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            79999987766432       122  567899999997  8999999999864 33 35777777

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.52  E-value=1.7e-07  Score=59.39  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=44.1

Q ss_pred             EEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc--CCceEEEEEEEE
Q psy14103         13 VLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL--EPKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~L~V~   76 (78)
                      .+.|++ ++..+.       ...|+.+..+.+|.|.+++.+|+|.|+|.+.+.  ...+..+.|.|.
T Consensus       121 ~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          121 SVSLMREGGRQVL-------RKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             SEEEEEGGGEECC-------TTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEecCCeecC-------CCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence            389976 566553       467898888889999999999999999999843  244566666665

>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A

Probab=98.52  E-value=6.5e-07  Score=53.77  Aligned_cols=55  Identities=20%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             CCcEEEEEeC-----CEEE-Ee--cc-c---ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAIL-TA--GS-T---KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~--~~-~---~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.     ...| ..  .. .   .....+||++.     ...+|+|.+++.+|+|.|.|.+...
T Consensus        30 ~~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~Y~Ca~~~~  101 (143)
T 3r0m_A           30 SSYDMGWFRQAPGKEREFVAAISWSGGTTDYADSVKGRFAISKDNAKNAVYLQMNSLKPEDTAVYYCAAKWR  101 (143)
T ss_dssp             TTEEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCcEEEEEEECCCCCCEEEEEEEcCCCcEecCcccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            3568999972     2333 22  11 1   11245899886     3578999999999999999999853

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.52  E-value=1.2e-07  Score=58.71  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .|.++....|.|+|++..+..+...    ...++.|.  ....|.|.+++.+|+|.|+|.+.+..
T Consensus       160 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~G~Y~C~a~n~~  222 (234)
T 2j6e_L          160 SDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYA--ASSYLSLTPEQWKSHRSYSCQVTHEG  222 (234)
T ss_dssp             CBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCB--CCEEECCCGGGTTTSCCEEEEEEBTT
T ss_pred             EEEcCCceEEEEEECCEECCCCccccCceECCCCCEE--EEEEEEECHHHcCCCCeEEEEEEeCC
Confidence            3433334689999998877543211    01223332  23579999999999999999999864

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=98.52  E-value=4.6e-07  Score=53.18  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=27.4

Q ss_pred             CCCEEE-E---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQL-V---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~-~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++ .   ..++|+|.+++.+|+|.|.|.+...
T Consensus        72 ~~rfs~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~  107 (128)
T 1nez_G           72 SKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN  107 (128)
T ss_dssp             GGTEEEEEETTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcCC
Confidence            479988 5   4578999999999999999998753

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.51  E-value=5.7e-07  Score=53.73  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=40.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      ++|.+.....+.|+|++..+..+.       +.  .....|.|.  +.+|+|.|+|.+.+..  +..+.|.|.
T Consensus        22 ~~~~~~p~~~~~W~k~~~~l~~~~-------~~--~~~~~l~i~--~~~d~G~Y~C~~~n~~--~~~~~l~V~   81 (184)
T 3b5h_A           22 LNDSATEVTGHRWLKGGVVLKEDA-------LP--GQKTEFKVD--SDDQWGEYSCVFLPEP--MGTANIQLH   81 (184)
T ss_dssp             EESCSSCCCEEEEESSSEEEECTT-------CC--CSEEEEEEC--GGGCCEEEEEEEESTT--SCEEEEEEC
T ss_pred             CCCCCCCceEEEEEeCCEEeeccc-------cc--CCcEEEEEe--chhhCeEEEEEEECCc--CcEEEEEEe
Confidence            355666666999999988876432       11  123456666  6999999999999833  345566554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.51  E-value=2.4e-07  Score=56.63  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.++....|.|+|++..+..+...    ...++.|...  ..|.|..++.+|+|.|+|.+.+..
T Consensus       139 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g~Y~C~a~n~~  202 (212)
T 1q0x_L          139 ITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMAS--SYLTLTARAWERHSSYSCQVTHEG  202 (212)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             EEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEE--EEEEEcHHHccCCCcEEEEEEeCC
Confidence            34544444689999998887543211    1123344332  479999999999999999999854

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.51  E-value=3.2e-07  Score=56.05  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             CCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||.+.   .+++|.|.+++.+|+|.|+|.+.+
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   90 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEc
Confidence            5899876   456999999999999999999995

>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.51  E-value=6e-07  Score=53.46  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=37.7

Q ss_pred             CcEEEEEeC-----CEEE-Eec-cc-----ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRG-----IAIL-TAG-ST-----KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~-~~-----~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|.     ...| ... ..     .....+||++.     ...+|+|.+++++|+|.|.|.+...
T Consensus        34 ~~~v~WyrQ~pg~~~~~L~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~YyCa~~~~  104 (137)
T 3eak_A           34 TFSLGWFRQAPGQGLEAVAAIASMGGLTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAVRG  104 (137)
T ss_dssp             GSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CcEEEEEEECCCCCCEEEEEEecCCCceecCCccCCCEEEEecCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            468999972     1333 321 11     11245899886     3478999999999999999999864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.51  E-value=3.1e-07  Score=62.02  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             EeccCCCCcEEEEEeC--CE----EEEeccc------ccCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeeccC-
Q psy14103          4 LSGLPDKNYVLAWKRG--IA----ILTAGST------KVTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTLE-   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~--~~----~l~~~~~------~~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~~-   65 (78)
                      ++|.+.+...|.|+|+  +.    ++.....      .....+||.+..     +++|.|.+++.+|+|.|+|.+.+.. 
T Consensus        24 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  103 (444)
T 1igt_B           24 TSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYY  103 (444)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             cCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCc
Confidence            3454433567999873  21    2222100      011347998863     5799999999999999999999753 


Q ss_pred             C---ceEEEEEEEE
Q psy14103         66 P---KEITHTLEIL   76 (78)
Q Consensus        66 ~---~~~~~~L~V~   76 (78)
                      .   ....+.|.|.
T Consensus       104 ~~~~~~~~~~l~V~  117 (444)
T 1igt_B          104 AMDYWGQGTTVTVS  117 (444)
T ss_dssp             CEEEEBCCEEEEEC
T ss_pred             ccccccCcEEEEec
Confidence            2   1223456654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.51  E-value=4.3e-07  Score=55.42  Aligned_cols=60  Identities=17%  Similarity=0.269  Sum_probs=42.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecc-c----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGS-T----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~-~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++..+.|.|+|++..+..+. .    ....++.|.+.  ..|.|..++.+|+|.|+|.+.+..
T Consensus       136 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~g~YtC~v~n~~  200 (213)
T 3r06_A          136 VNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLS--STLSLTKADYERHNLYTCEVTHKT  200 (213)
T ss_dssp             EEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCCEEEEEEEETT
T ss_pred             EeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEE--EEEEeCHHHhccCCeEEEEEEecc
Confidence            445554457899999988876431 1    11244555554  479999999999999999999864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.51  E-value=1.9e-07  Score=64.16  Aligned_cols=71  Identities=18%  Similarity=0.308  Sum_probs=45.4

Q ss_pred             eccCCCCcEEEEEeCCEE--EEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKRGIAI--LTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~--l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.. ..+.|+|++..  +...... ....++......+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|..
T Consensus       236 ~g~p~p-~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  309 (524)
T 2ec8_A          236 KDVSSS-VYSTWKRENSQTKLQEKYNS-WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD  309 (524)
T ss_dssp             EESSTT-CEEEEEETTCSCCCCEEEEE-EECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES
T ss_pred             ecCCCc-EEEEEEeCCCCCcccccccc-ccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec
Confidence            344433 24999997654  2221110 0011112335689999999999999999999986 4556788888753

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.51  E-value=6.4e-08  Score=58.74  Aligned_cols=48  Identities=10%  Similarity=0.095  Sum_probs=35.3

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLE   74 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~   74 (78)
                      +.|.|+|++..+..+       .|        +.|.+++.+|+|.|+|.+.|.. ..+..+.|.
T Consensus       125 p~i~W~~~g~~l~~~-------~~--------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          125 VELKLYQGKEHLRSL-------RQ--------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             CEEEEEETTEEEEEE-------SS--------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             cEEEEEECCEECCCC-------Cc--------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            789999998877542       23        3445788999999999999874 555555544

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.50  E-value=8.8e-08  Score=59.61  Aligned_cols=60  Identities=12%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             EeccC--CCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLP--DKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~--~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.+  ...+.|.|+|++..+.....   ....+++|..  ..+|.|.+++.+|+|.|+|++.+..
T Consensus        35 ~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~g~Y~C~~~~~~   99 (218)
T 2rgs_A           35 VVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV--VSTLPIQHQDWMSGKEFKCKVNNKD   99 (218)
T ss_dssp             EEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEE--EEEEECCHHHHHTTCCEEEEEEETT
T ss_pred             EcCCccCCCceEEEEEECCccccCcccccccccCCCeEEE--EEEEEEcHHHcCCCCeEEEEEECCc
Confidence            45554  33578999998766542211   1123455644  3689999999999999999999863

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.50  E-value=3.7e-07  Score=58.17  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             CCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+||.+..     ..+|.|.+++.+|+|.|+|.+.+.
T Consensus       217 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          217 VKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             TTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            457998862     378999999999999999999864

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.50  E-value=3.8e-07  Score=54.33  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=37.3

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-Cc-eEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PK-EITHTLEI   75 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~L~V   75 (78)
                      .+.|+|++..+...        .   ....+|.|.++  +|+|.|+|.+.|.. .. +..+.|.|
T Consensus       130 ~v~W~~~~~~~~~~--------~---~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          130 TIVWWRGTTKIGGP--------A---PSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEEETTEECSCS--------E---ESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEcCCeECCCC--------C---CCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            79999988776321        1   16789999998  59999999999874 33 34666666

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.49  E-value=3.7e-07  Score=61.05  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=42.5

Q ss_pred             cEEEEEeCC-----EEEEe-cccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         12 YVLAWKRGI-----AILTA-GSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~-----~~l~~-~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      ..|.|+|+.     ..+.. .... ....+||.+.   ...+|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.
T Consensus        35 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  111 (438)
T 1qgc_4           35 SFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLK  111 (438)
T ss_dssp             ECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEEC
T ss_pred             ceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEec
Confidence            479999842     22221 1111 1235799876   35789999999999999999999864  22344555553

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.49  E-value=3.5e-07  Score=58.36  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+||++.     .+.+|+|.+++.+|+|.|.|.+.+
T Consensus        63 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   99 (248)
T 3u2s_H           63 VWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREA   99 (248)
T ss_dssp             TTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeC
Confidence            35899886     346799999999999999999986

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.49  E-value=2.4e-07  Score=57.18  Aligned_cols=68  Identities=16%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecc-----cccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGS-----TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~-----~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      +.|.++..+.|.|+|++..+..+.     .....++.|.+.  ..|.|..+..+|+|.|+|.+.+.. ......++
T Consensus       159 ~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          159 LNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             EEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             EcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEE--EEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence            344343357999999988775431     111245566554  479999999999999999999874 34444433

>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0

Probab=98.49  E-value=1.1e-06  Score=53.26  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             CcEEEEEeC-----CE-EEEeccc------ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IA-ILTAGST------KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~-~l~~~~~------~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     .+ ++.....      .....+||++.     ...+|+|.+++++|+|.|.|.+..
T Consensus        45 ~~~v~WyrQ~pg~~p~~L~~~~~~~~~~~~~~~~~~Rfs~s~~~s~~~~sL~I~~lq~~Dsg~YyCa~~~  114 (151)
T 3k3q_A           45 AGAMGWFRQAPGKDREFVAAISPRTDETYYAESLEGRFSVSRDAAATMVFLQADNVRLDDTASYYCAADE  114 (151)
T ss_dssp             CCEEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTCEEEECTTSSEEEEEESSCCSTTCEEEEEEEET
T ss_pred             CeeEEEEEECCCCCcEEEEEEeCCCCceecCCccCCCEEEEecCCCCEEEEEECCCccccCEEEEEEEec
Confidence            568999982     23 3332111      11245899986     247899999999999999999975

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.48  E-value=7.7e-08  Score=59.05  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=43.4

Q ss_pred             eccCCCCcEEEEEe-CCEEEEecccccCCCCCEEE--EcCe---EEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          5 SGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQL--VDGY---NLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         5 ~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~--~~~~---sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      .|.|.  +.|.|++ ++..+..+       .+...  ..++   .|.|.+++.+|+|.|+|.+.+. +..+..+.|.|.+
T Consensus       136 ~g~P~--~~v~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          136 QGYPE--AEVFWKDGQGVPLTGN-------VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             EEBSC--CEEEEECTTSCBCCSE-------EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             cccCC--CeEEEEcCCCccCCCC-------cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence            45554  5899998 44444211       11111  1222   3789999999999999999987 5778888888865

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.48  E-value=3.1e-07  Score=54.95  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      .+.|+|++..+..              .+.+|.|.+++.+|+|.|+|.+.+.. .+..++|.|.
T Consensus        36 ~i~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~~~~-~s~~~~l~V~   84 (176)
T 1f2q_A           36 STKWFHNGSLSEE--------------TNSSLNIVNAKFEDSGEYKCQHQQVN-ESEPVYLEVF   84 (176)
T ss_dssp             CCEEEETTEECSC--------------CSSEEEECSCCGGGCEEEEEECTTSS-CCCCEEEEEE
T ss_pred             eEEEEECCeECCC--------------CceEEEEeccceecCEEEEEEcCCcc-ccccEEEEEe
Confidence            4799998876531              36799999999999999999998743 3344555553

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.48  E-value=5.6e-07  Score=62.56  Aligned_cols=32  Identities=19%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             CCCEEEEc-----CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++..     +++|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~  102 (512)
T 1zvo_C           66 RGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNP  102 (512)
T ss_pred             CCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECC
Confidence            58998762     479999999999999999999875

>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*

Probab=98.48  E-value=6e-07  Score=54.02  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=27.8

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+||++.     ...+|+|.+++.+|+|.|.|.+..
T Consensus        66 ~~~Rfs~~~~~~~~~~sL~I~~lq~~Dsg~YyCa~~~  102 (146)
T 3qyc_A           66 VKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCVTLP  102 (146)
T ss_dssp             TTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             cCCcEEEEecCCCCEEEEEECCCCHHhCEEEEEEEec
Confidence            45899886     357899999999999999999874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.47  E-value=7e-08  Score=58.49  Aligned_cols=45  Identities=11%  Similarity=0.076  Sum_probs=34.1

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|+|++..+..       ..+ ....+..|.|.+|+.+|+|.|+|.+.+.
T Consensus       122 ~~~~w~k~g~~~~~-------~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  166 (184)
T 2gi7_A          122 DQFALYKEGDPAPY-------KNP-ERWYRASFPIITVTAAHSGTYRCYSFSS  166 (184)
T ss_dssp             CEEEEEECCCCTTS-------CCC-CEEEEESSSEEEETTCCSEEEEEEEECT
T ss_pred             cEEEEEECCCcCcc-------eec-CCCceEEEEEccCCccCCeEEEEEEEeC
Confidence            58899998765431       112 2335678999999999999999999985

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.47  E-value=5.5e-08  Score=60.97  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=38.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEE-EEcCe--EEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQ-LVDGY--NLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~-~~~~~--sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      ...+.|+|++..+....      .++. ...+.  +|.|.+|+.+|+|.|+|.+.+..   ..+..+.|.|.+
T Consensus        36 ~~~~~W~k~g~~~~~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           36 AYLTQLMIIKNSTYREI------GRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             CSEEEEEEEETTEEEEC------SEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             CCEEEEEECCCcccccc------cccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcC
Confidence            46899999754443211      1111 12345  89999999999999999999853   223446666654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.47  E-value=5.3e-07  Score=55.69  Aligned_cols=68  Identities=7%  Similarity=0.068  Sum_probs=43.8

Q ss_pred             CCCCcEEEEEeCCEEEEecccccC--CCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-C-------ceEEEEEEEEe
Q psy14103          8 PDKNYVLAWKRGIAILTAGSTKVT--PDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-P-------KEITHTLEILG   77 (78)
Q Consensus         8 ~~~~~~v~W~k~~~~l~~~~~~~~--~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-------~~~~~~L~V~g   77 (78)
                      |...+.|.|+|++..|........  ...+..  ....|.|..+...|.|.|+|++.+.. .       .+....|+|..
T Consensus       120 p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~--~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLET--KSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             SGGGEEEEEEETTEEEEEEECCSCCSSCCCEE--EEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             CCCCeEEEEEeCCeECcccccccccCcCcceE--EEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            334468999999888754321110  011121  23467899998899999999999752 2       35677777753

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.46  E-value=8.6e-07  Score=63.76  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=47.6

Q ss_pred             eccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----c----CeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          5 SGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----D----GYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~----~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      .|.|.  +.|.|+|++..+.       ...|+...    .    ..+|.|.+++.+|+|.|+|.+.+. +..+..+.|.|
T Consensus       454 ~g~p~--p~v~W~~~g~~l~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  524 (816)
T 3dmk_A          454 GGNPT--PEISWELDGKKIA-------NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV  524 (816)
T ss_dssp             ECSSC--CEEEEEETTEECC-------SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCC--CEEEEEECCEECC-------CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEE
Confidence            45444  5899999987774       34566542    1    236999999999999999999986 46677788887


Q ss_pred             Ee
Q psy14103         76 LG   77 (78)
Q Consensus        76 ~g   77 (78)
                      .+
T Consensus       525 ~~  526 (816)
T 3dmk_A          525 YG  526 (816)
T ss_dssp             CS
T ss_pred             ec
Confidence            54

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.46  E-value=1.5e-07  Score=57.53  Aligned_cols=60  Identities=22%  Similarity=0.296  Sum_probs=43.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.++..+.|.|+|++..+..+..    ....+.+|.+.  ..|.|.+++.+|+|.|+|.+.+..
T Consensus       135 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g~Y~C~v~~~~  198 (211)
T 3tv3_L          135 ISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSHRSYSCQVTHEG  198 (211)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEE--EEEEECHHHHHHSSCEEEEEEETT
T ss_pred             eeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEE--EEEEEcHHHhCCCCeEEEEEEECC
Confidence            3455555679999999888754211    11345666554  479999999999999999999864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.46  E-value=3.7e-07  Score=55.76  Aligned_cols=56  Identities=16%  Similarity=0.348  Sum_probs=37.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeE----EEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYN----LQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~s----L~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.|.  +.|.|+|++..+.....   ...|+.. .+..    |.|.+++.+|+|.|+|.+.+..
T Consensus        33 ~~g~p~--~~v~W~~~g~~~~~~~~---~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~   92 (217)
T 2vr9_A           33 VEGKPE--PTIEWFKDGEPVSTNEK---KSHRVQF-KDGALFFYRTMQGKKEQDGGEYWCVAKNRV   92 (217)
T ss_dssp             EECSSC--CEEEEEETTEECCCSSS---SSSEEEC-TTSCEEESSCCBSSSCBCCEEEEEEEEETT
T ss_pred             cCCCCC--CeEEEEECCcCccCCCc---cceeEEe-cCCceEEEEEeccCCcccCceEEEEEecCC
Confidence            345443  57999998887754311   1233332 2333    3789999999999999999753

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1

Probab=98.46  E-value=8.9e-07  Score=52.38  Aligned_cols=32  Identities=34%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||++.     ..++|+|.+++++|+|.|.|.+...
T Consensus        67 ~gRfsis~~~s~~~~~LtIs~lq~eDsa~Y~Ca~~~~  103 (127)
T 1q8m_A           67 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP  103 (127)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            3799986     3478999999999999999998864

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.46  E-value=2.8e-07  Score=58.92  Aligned_cols=66  Identities=20%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             cEEEEEeC--C----EEEEecccc-cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEEEe
Q psy14103         12 YVLAWKRG--I----AILTAGSTK-VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~--~----~~l~~~~~~-~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V~g   77 (78)
                      ..+.|+|.  +    .++...... ...++||++.     ...+|+|.+++.+|+|.|.|.+.....  -.....|.|.+
T Consensus        31 ~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~g~gt~L~V~~  110 (229)
T 2q86_A           31 NHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIP  110 (229)
T ss_dssp             SCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEECCCEEEEEEC
T ss_pred             cEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccccCCEEEEEEC
Confidence            46999982  1    223332211 1236899886     357999999999999999999975321  11233666654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.46  E-value=1.9e-07  Score=57.20  Aligned_cols=64  Identities=16%  Similarity=0.084  Sum_probs=40.2

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEE-EEcCeEEEEccCCCCCCEEEEEEeecc------CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQ-LVDGYNLQITDLQTTDAGSYQCQIGTL------EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~------~~~~~~~~L~V~g   77 (78)
                      +...+.|+|++..+....    ...++. ...+.+|.|.+|+.+|+|.|+|.+.+.      ...+..+.|.|.+
T Consensus        34 ~~~~~~w~k~g~~~~~~~----~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~  104 (201)
T 1nkr_A           34 MFEHFLLHREGMFNDTLR----LIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIG  104 (201)
T ss_dssp             CCSEEEEEEESSSCEEEE----EECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEEC
T ss_pred             CCCEEEEEECCCcCCcce----eeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeec
Confidence            346899999764432110    011121 124678999999999999999999743      1234556666653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.46  E-value=2.9e-07  Score=56.87  Aligned_cols=62  Identities=15%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             Eec-cCCCCcEEEEEeCCEEEEecccc--c-CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCc
Q psy14103          4 LSG-LPDKNYVLAWKRGIAILTAGSTK--V-TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPK   67 (78)
Q Consensus         4 ~~~-~~~~~~~v~W~k~~~~l~~~~~~--~-~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~   67 (78)
                      +.| .|...+.|.|+|++..+......  . ..+++|.+..  .|.|..++.+|.|.|+|.+.+....
T Consensus       147 ~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s--~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          147 VQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSS--QLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             EEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEE--EEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEE--EEEECHHHcCCCCeEEEEEEECCCC
Confidence            344 44435689999976554322111  1 3567887653  7999999999999999999986533

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.46  E-value=2.8e-07  Score=59.71  Aligned_cols=61  Identities=18%  Similarity=0.358  Sum_probs=40.2

Q ss_pred             EeccCCCCcEEEEEeCC-----EEE-Eecc------cccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGI-----AIL-TAGS------TKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~-----~~l-~~~~------~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+...+.|.|+|+.     ..+ ....      .....++||++.     .+++|+|.+++.+|+|.|+|.+.+.
T Consensus        46 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  123 (291)
T 2gki_A           46 ASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAY  123 (291)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECG
T ss_pred             ccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEecc
Confidence            34554335689999831     222 2110      001124788875     2579999999999999999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.46  E-value=1.6e-07  Score=59.98  Aligned_cols=58  Identities=12%  Similarity=0.017  Sum_probs=41.4

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc----CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL----EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~L~V~g   77 (78)
                      ..+.|+|++..+...        +.....+..|.|.+|+.+|+|.|+|.+.+.    ...+..+.|.|.|
T Consensus       130 ~~~~w~k~g~~~~~~--------~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          130 SMFLLLKEGRSSHVQ--------RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             SEEEEEECSSSCEEE--------EEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CEEEEEECCCccCcc--------ccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            478899876544320        111125679999999999999999999864    2556777788765

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.45  E-value=2.9e-07  Score=59.33  Aligned_cols=55  Identities=24%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             CcEEEEEeC--C---EEEEec-cc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRG--I---AILTAG-ST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~--~---~~l~~~-~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .+.+.|+|.  +   ..+... .. .....+||++.   ...+|+|.+++.+|+|.|+|.+.+..
T Consensus       170 ~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          170 NQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             TTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            468999872  1   222111 11 11245899876   34679999999999999999998743

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.45  E-value=4e-07  Score=58.11  Aligned_cols=62  Identities=15%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~g   77 (78)
                      ...+.|+|++..+.....     .+.....+.+|.|.+|+.+|+|.|+|++.+..   ..+..+.|.|.+
T Consensus        34 ~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           34 AVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             CCEEEEEETTEEEEEECC-----SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CcEEEEEECCCccccccc-----cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeec
Confidence            357899998876642110     11111256789999999999999999997642   335566676654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.44  E-value=2.4e-07  Score=60.95  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEEcCeEEEEccCCCCC------CEEEEEEeeccCC--ceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTD------AGSYQCQIGTLEP--KEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D------~G~Y~C~~~~~~~--~~~~~~L~   74 (78)
                      ++|.|.  +.|.|+| ++..+...      +....+..+++|.|.+++.+|      +|.|+|.+.+...  .+..+.|.
T Consensus        28 ~~g~p~--p~v~W~k~~g~~~~~~------~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~   99 (388)
T 2v5m_A           28 ASGNPM--PEIIWIRSDGTAVGDV------PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR   99 (388)
T ss_dssp             EEEESC--CEEEEEETTSCBCCCB------TTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCCCC--CEEEEEcCCCCccccC------CCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEE
Confidence            355554  5899999 67665421      223345577899999999998      9999999998632  23344554


Q ss_pred             E
Q psy14103         75 I   75 (78)
Q Consensus        75 V   75 (78)
                      |
T Consensus       100 v  100 (388)
T 2v5m_A          100 A  100 (388)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.44  E-value=2.7e-07  Score=58.76  Aligned_cols=58  Identities=10%  Similarity=-0.004  Sum_probs=44.4

Q ss_pred             cEEEEE-eCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeeccCCc--eEEEEEEEE
Q psy14103         12 YVLAWK-RGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTLEPK--EITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~-k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~~~--~~~~~L~V~   76 (78)
                      +.|.|+ +++..+.       .+.|+.+..+..|.|.+++.+|+| .|+|.+.+....  +..+.|.|.
T Consensus       121 ~~v~W~~~~g~~l~-------~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          121 SQYSLIECDGKSLP-------TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             EEEEEEETTSCCCC-------TTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ceEEEEeCCCcCCC-------CCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            789994 5666553       357788887789999999999999 999999986422  334666664

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=59.81  Aligned_cols=30  Identities=7%  Similarity=0.065  Sum_probs=25.3

Q ss_pred             CEEEEcCeE--EEEccCCCCCCEEEEEEeecc
Q psy14103         35 RIQLVDGYN--LQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        35 R~~~~~~~s--L~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ||.+..+..  |+|.+|+.+|+|.|+|.+.+.
T Consensus        65 R~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (253)
T 3to4_D           65 DYLATRVTDTELRLQVANMSQGRTLYCTSSAD   96 (253)
T ss_dssp             EEEEECCSSSCCEEEEESCSSCEEEEEEEECS
T ss_pred             cEEEEeCCCCeEEEccCChhhCeEEEEEEecC
Confidence            998874333  999999999999999999854

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.43  E-value=2.7e-07  Score=58.52  Aligned_cols=54  Identities=24%  Similarity=0.285  Sum_probs=37.2

Q ss_pred             cEEEEEe--CC---EEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         12 YVLAWKR--GI---AIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        12 ~~v~W~k--~~---~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ..|.|+|  ++   ..+ ...... ....+||.+.   ..++|+|.+++.+|+|.|+|.+.+..
T Consensus       169 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          169 NYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            4799998  33   222 211111 1235799875   35689999999999999999999853

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=98.43  E-value=6.9e-07  Score=51.71  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=27.8

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+||++.     .+.+|+|.+++.+|+|.|.|.+..
T Consensus        65 ~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~  101 (122)
T 3nn8_A           65 LKSRATLTVDKTSSTVYLELRSLTSEDSSVYYCARRG  101 (122)
T ss_dssp             GTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            35899886     347999999999999999999975

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.43  E-value=1.7e-07  Score=58.04  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-cc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-ST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|.++....|.|+|++..+..+ ..    ....++.|...  ..|.|..++.+|+|.|+|.+.+..
T Consensus       158 ~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~g~Y~C~a~n~~  222 (233)
T 3bqu_C          158 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERHNSYTCEATHKT  222 (233)
T ss_dssp             EEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTCCCEEEEEEEC-
T ss_pred             EccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEE--EEEEECHHHhCCCCCEEEEEEeCC
Confidence            34544444579999988776543 11    11244556543  579999999999999999999863

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.43  E-value=5.7e-07  Score=57.51  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+||.+.     ...+|.|.+++.+|+|.|+|.+.+.
T Consensus       203 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          203 KNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            5788775     3579999999999999999999984

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.43  E-value=5e-07  Score=62.01  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.+.....|.|+|++..+..+...    ...+++|.+.  ..|.|.+++.+|+|.|+|.+.+.
T Consensus       138 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~G~Y~C~a~n~  200 (523)
T 2rcj_C          138 ISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAAS--SYLSLTPEQWKSHRSYSCQVTHE  200 (523)
T ss_pred             eccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEE--EEEEEechhcCCCceEEEEEEec
Confidence            34555444689999988766433211    0123444332  47999999999999999999986

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=98.43  E-value=6e-07  Score=52.50  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             CcEEEEEeC--C---EEE---Eecccc-cCCCCC-EEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG--I---AIL---TAGSTK-VTPDKR-IQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~--~---~~l---~~~~~~-~~~~~R-~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.  +   ..+   ...... ....+| |+..   ...+|+|.+++.+|+|.|.|.+..
T Consensus        33 ~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~r~f~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~   98 (130)
T 3osk_A           33 EVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVEL   98 (130)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEETTSCCCCCSCCSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEEEEeCCCCCcEEEEEEEcCCCceeeecceEEeccCCCCEEEEEEcCCChHHCEEEEEEEEe
Confidence            457999982  2   222   222211 113467 7654   568999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	6e-05
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	0.001
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	0.002

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 6e-05
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 3  YLSGLPDKNYVLAWKRGIAILTAGSTKVT--PDKRIQLVDGYNLQITDLQTTDAGSYQCQ 60
                D + V   +    +                +++   +L+I +L   D+G+Y   
Sbjct: 19 NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVT 78

Query: 61 I 61
          +
Sbjct: 79 V 79

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.001
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 40  DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE 74
           D + L++ +LQ  D G YQC I   +P  +    +
Sbjct: 67  DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ 101

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (71), Expect = 0.002
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 40 DGYNLQITDLQTTDAGSYQCQIGT 63
          +  ++ I  L+ +D G+Y+C +  
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLK 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.49
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.46
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.45
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.42
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.41
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.4
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.4
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.4
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.39
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.38
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.38
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.37
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.34
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.32
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.31
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.3
d2avga1	110	Cardiac myosin binding protein C, different domain	99.3
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.29
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.28
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.28
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.28
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.26
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.25
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.25
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.24
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.23
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.23
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.22
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.22
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.2
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.19
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.19
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.16
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.14
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.14
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.12
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.12
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.12
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.11
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.09
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.08
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.05
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.04
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.03
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.01
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.99
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.97
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.97
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.96
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.95
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.94
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.94
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.92
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.9
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.85
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.85
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.82
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.82
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.77
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.76
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.75
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.75
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.74
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.74
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.71
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.71
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.66
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.65
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.64
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.64
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.61
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.6
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.59
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.59
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.59
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.58
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.56
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.55
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.55
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.54
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.54
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.53
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.51
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.49
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.48
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.46
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.45
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.45
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.44
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.44
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.42
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.42
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.42
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.41
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.39
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.38
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.38
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.37
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.37
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.36
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.35
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.34
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.33
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.33
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.33
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.32
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.32
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.32
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.32
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.31
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.31
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.3
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.3
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.29
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.29
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.29
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.28
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.27
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.27
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.27
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.26
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.26
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.26
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.25
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.25
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.24
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.23
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.21
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.2
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.2
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.2
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.19
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.18
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.17
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.16
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.16
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	98.16
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.14
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.13
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.13
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.12
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.12
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.12
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.12
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.11
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.11
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.1
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.09
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	98.07
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.06
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.03
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	98.01
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.9
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.67
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.61
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.6
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.59
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.57
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.57
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.56
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.48
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.47
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.43
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.41
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.39
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.38
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.36
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.35
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.3
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.29
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.29
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.27
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.25
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.24
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.23
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.21
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.21
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.18
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.13
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.1
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.09
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.07
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.06
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.05
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.04
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.03
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.02
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.0
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.0
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.98
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.97
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.94
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.9
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.83
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.71
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.71
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.69
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.49
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.39
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.37
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.34
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.14
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.0
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	95.92
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.89
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.74
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.68
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.52
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	95.2
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.86
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.71
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.66
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	93.04
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	92.38
d2giya1	177	Alphaherpesvirus glycoprotein E {Human herpesvirus	88.29
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	83.85

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=76.63  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.|.|.  +.|.|+|++..|.       .++|+...    +..+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.+|
T Consensus        28 v~g~P~--p~v~W~k~~~~i~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~k   98 (98)
T d1g1ca_          28 VVGKPD--PECEWYKNGVKIE-------RSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK   98 (98)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEecC--CeEEEEeCceEEe-------eeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEEC
Confidence            456665  5899999998875       34555432    3358999999999999999999987 47788999999875

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=77.05  Aligned_cols=65  Identities=12%  Similarity=0.299  Sum_probs=52.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..|.       .++|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|++
T Consensus        24 v~g~p~--p~v~W~k~~~~l~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          24 VTGTQP--ITCTWMKFRKQIQ-------ESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             EESSSS--CEEEEEESSSBCC-------CSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             EEecCC--CEEEEEeCceeec-------cCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEe
Confidence            456654  5899999887764       45677765   3457999999999999999999987 5778888999876

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=1.9e-13  Score=75.01  Aligned_cols=63  Identities=27%  Similarity=0.424  Sum_probs=51.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..|.       .+.|+.+. +.+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|+
T Consensus        25 ~~g~P~--p~v~W~k~g~~i~-------~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          25 ASGKPR--PAVRWLRDGQPLA-------SQNRIEVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CCSSEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcC--CEEEEEEeecccc-------ccceeeee-eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            466666  4789999988774       45788775 568999999999999999999987 477788899886

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.46  E-value=2.5e-13  Score=75.81  Aligned_cols=64  Identities=19%  Similarity=0.337  Sum_probs=51.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..|.       .++|+.+.    ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.
T Consensus        32 ~~g~P~--p~v~W~k~~~~i~-------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          32 VEGYPD--PEVMWFKDDNPVK-------ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEESC--CEEEEEETTEECC-------CSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeccC--CeEEEEeeecccc-------ceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence            456665  5899999998875       34677654    3468999999999999999999987 477888888886

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.5e-13  Score=75.53  Aligned_cols=70  Identities=16%  Similarity=0.392  Sum_probs=53.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|.|..  .|.|+|++..+.....   ...+.... ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|+.|
T Consensus        29 ~~g~P~p--~i~W~~~g~~i~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~K  100 (100)
T d1qz1a3          29 ADGFPEP--TMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  100 (100)
T ss_dssp             EEEESCC--EEEEEETTEECCCC-----CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEecCC--EEEEEeCCcccccccc---cceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEEC
Confidence            5677764  8999999887754321   12333333 5678999999999999999999987 57888999999876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.42  E-value=5.2e-13  Score=73.16  Aligned_cols=61  Identities=23%  Similarity=0.461  Sum_probs=49.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      ++|.|..  .|.|+|++..|.        ++|+.+.+ ..|.|.+++.+|+|.|+|.+.|. +..+..+.|.|
T Consensus        27 ~~g~P~p--~v~W~~~~~~i~--------~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          27 VTGLPAP--NVVWSHNAKPLS--------GGRATVTD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEESCC--CCEEEETTEECC--------SSSEEEET-TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEeCCC--EEEEEeCCccCc--------cccEEEee-eeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            5677765  679999988773        46887764 47999999999999999999987 46677777776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.1e-13  Score=73.54  Aligned_cols=66  Identities=20%  Similarity=0.330  Sum_probs=51.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+..     ....++....+++|.|.+++.+|+|.|+|++.|. ........++|.
T Consensus        25 v~g~p~--p~v~W~~~~~~i~~-----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          25 VVSSLP--PTIIWKHKGRDVIL-----KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EECSSC--CEEEEEETTEEGGG-----GCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EeecCC--CeEEEEEcCccccc-----ccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence            566665  58999998877654     2456777777889999999999999999999985 455666666664

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.41  E-value=3.9e-13  Score=74.55  Aligned_cols=67  Identities=15%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|..  .|.|+|++..|....    ...++... ..++|.|.+++.+|+|.|+|.+.|. +..+..++|+|+
T Consensus        29 ~~g~P~p--~i~W~kng~~l~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          29 AGGNPMP--TMRWLKNGKEFKQEH----RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             EEEESCC--EEEEEETTEECCGGG----STTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeEECCC--EEEEEECCEeccccC----ceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            4666664  799999998885432    12233333 5679999999999999999999987 477888888874

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.9e-13  Score=74.02  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEE--E---cCeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQL--V---DGYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~--~---~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~V~   76 (78)
                      ++|.|.  +.|.|+|++..+...       .++.+  .   ....|.|.+++.+|+|.|+|.+.|.. . .+..++|+|.
T Consensus        20 v~g~p~--p~v~W~k~g~~l~~~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          20 VEGMEE--PDIQWVKDGAVVQNL-------DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EESCSS--CCEEEEETTEECCSS-------EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEecCC--ceEEEEEeecccccc-------eeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            456665  478999998887532       23322  2   23589999999999999999999873 3 4678999998


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      |
T Consensus        91 G   91 (91)
T d1rhfa1          91 G   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=1.9e-13  Score=75.21  Aligned_cols=64  Identities=14%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.+  .|.|+|++..+.       .+.|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|+
T Consensus        26 ~~g~P~p--~v~W~~~~~~i~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          26 FIGAPDP--TATWTVGDSGAA-------LAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EECCSSC--EEEEECSSSSCB-------CSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEecCC--eEEEEeeeeece-------eeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            5677765  789999876664       34566554   4568999999999999999999987 477778887763

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.40  E-value=1.7e-13  Score=75.95  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ++|.|.  +.|.|+|++..|..       +.|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..++|.|..
T Consensus        25 ~~g~P~--p~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          25 VIASSP--PVVTWHKDDRELKQ-------SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EECSSC--CEEEEEETTEECCS-------BTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEEC
T ss_pred             EEEcCC--CEEEEEEeeeccce-------eeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEee
Confidence            566665  48999999988753       4566554   3457999999999999999999987 4778888888864

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-13  Score=74.64  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      .++|.|..  .|.|+|++..|..+       .|+...       ....|.|.+++.+|+|.|+|.+.|. +..+..++|.
T Consensus        25 ~v~G~P~P--~v~W~~n~~~i~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          25 VVRGNPPP--TLHWLHNGQPLRES-------KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             EEECSSCC--EEEEEETTEECCCS-------SSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEeCCC--eEEEEeCccccCCC-------cceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            46787775  89999999887542       333321       2356999999999999999999987 4777888887


Q ss_pred             EEe
Q psy14103         75 ILG   77 (78)
Q Consensus        75 V~g   77 (78)
                      |++
T Consensus        96 V~~   98 (105)
T d1wwca_          96 FLK   98 (105)
T ss_dssp             CSC
T ss_pred             EEe
Confidence            754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=73.70  Aligned_cols=66  Identities=23%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE--------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV--------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      ++|.|..  .|.|+|++..|..       +.++.+.        ....|.|.+++.+|+|.|+|.+.|. +..+..++|.
T Consensus        25 v~G~P~P--~i~W~~~g~~l~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (103)
T d1wwbx_          25 VKGNPKP--ALQWFYNGAILNE-------SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             EECSSCC--EEEEEETTEEECC-------CSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEEeCCC--EEEEEECCEEeee-------eeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEE
Confidence            5777765  7899999988854       2344322        2357999999999999999999997 5778888888


Q ss_pred             EEeC
Q psy14103         75 ILGF   78 (78)
Q Consensus        75 V~g~   78 (78)
                      |+++
T Consensus        96 V~~~   99 (103)
T d1wwbx_          96 FMGW   99 (103)
T ss_dssp             CSCC
T ss_pred             EEeC
Confidence            7653

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.38  E-value=2.3e-13  Score=74.69  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=49.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.+  .|.|+|++..|.       .+.|+.+.   ...+|.|.+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        23 ~~g~P~p--~v~W~~~g~~l~-------~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          23 TDGEPVP--TVTWLRKGQVLS-------TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CCCSSCC--CCEEESSSSTTC-------SSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             EEEEeCC--eEEEEEeecccc-------cccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            4566654  689999876663       34555544   5689999999999999999999987 577788888763

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.1e-12  Score=72.10  Aligned_cols=65  Identities=18%  Similarity=0.391  Sum_probs=49.7

Q ss_pred             cEEEEEeCCEEEEe-c--ccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEE
Q psy14103         12 YVLAWKRGIAILTA-G--STKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~~~l~~-~--~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~   76 (78)
                      ..|.|.|+...+.. .  ......+.|+.+..+++|+|++++.+|+|.|+|++.+. +..  +....|.|.
T Consensus        27 ~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          27 DEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             heeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            47999997765532 2  22235678898889999999999999999999999865 333  567777774

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=1.9e-12  Score=71.74  Aligned_cols=66  Identities=17%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc-CC-ceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL-EP-KEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~L~V~   76 (78)
                      +.|.|..  .|.|+|++..+...     ...++...   ...+|.|.+++.+|+|.|+|.+.|. +. .+..++|+|+
T Consensus        27 ~~g~P~~--~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          27 YGSNPMG--YPNYFKNGKDVNGN-----PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             EECSSCC--CCEEEETTEECCCC-----TTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEecCC--EEEEEEeeeecccc-----ceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            4566654  68999999887542     22333322   4568999999999999999999987 44 4567889885

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.7e-13  Score=73.42  Aligned_cols=55  Identities=15%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTL   73 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L   73 (78)
                      +.|+|+|++..+.       ...|.....+.+|.|.+|+.+|+|.|+|.+.+....+....+
T Consensus        37 ~~i~W~k~~~~l~-------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~t~~l~V   91 (93)
T d1n26a1          37 ATVHWVLRKPAAG-------SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLV   91 (93)
T ss_dssp             SEEEEEEECSSSS-------CCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCSCEEEEEE
T ss_pred             ceEEEEEcccccc-------ceeeEEecCCCEEEECCCChhcCEEEEEEECCccccEEEEEE
Confidence            5899999876553       345565567789999999999999999999876555554433

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-12  Score=73.16  Aligned_cols=71  Identities=15%  Similarity=0.364  Sum_probs=50.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc----------------------ccCCCCCEEEE---cCeEEEEccCCCCCCEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST----------------------KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQ   58 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~----------------------~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~   58 (78)
                      ++|.|.  +.|.|+|++..+.....                      ......|+.+.   ...+|.|.+++.+|+|.|+
T Consensus        33 v~G~P~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (130)
T d1gxea_          33 ISGDPA--PTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYT  110 (130)
T ss_dssp             CCSBSC--CEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTTTCEEEE
T ss_pred             EEEecC--CeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECcCChhcCEEEE
Confidence            567766  48999985433322110                      01234566654   4467999999999999999


Q ss_pred             EEeecc-CCceEEEEEEEE
Q psy14103         59 CQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        59 C~~~~~-~~~~~~~~L~V~   76 (78)
                      |.+.|. +..+..++|.|+
T Consensus       111 C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_         111 VTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEE
Confidence            999987 577888888875

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.1e-12  Score=72.24  Aligned_cols=69  Identities=20%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             EeccCCC-CcEEEEEeCCEE-EEecccccCCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103          4 LSGLPDK-NYVLAWKRGIAI-LTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus         4 ~~~~~~~-~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      ++|.|.. .+.|.|+|++.. +...     ...|+.+.         ....|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus        24 v~g~p~~~~p~v~W~k~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   98 (113)
T d2dava1          24 VKAEDLLRKPTIKWFKGKWMDLASK-----AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSF   98 (113)
T ss_dssp             EECCCSSSCCEEEEEESSSCCHHHH-----TTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECC
T ss_pred             EccCCCCCCCEEEEEEeeccccccc-----cceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEE
Confidence            5667653 579999996532 2211     22344332         2357999999999999999999987 5778888


Q ss_pred             EEEEEe
Q psy14103         72 TLEILG   77 (78)
Q Consensus        72 ~L~V~g   77 (78)
                      +|.|..
T Consensus        99 ~L~V~~  104 (113)
T d2dava1          99 DLEVHE  104 (113)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            998864

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.3e-12  Score=68.74  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+..+     ...++.+.   ..++|.|.+++.+|+|.|+|++.+   .+..++|.|.-
T Consensus        27 p~~~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~a~l~V~~   89 (90)
T d1x44a1          27 DDANVKWFKNGEEIIPG-----PKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---GQSSAKLSVDL   89 (90)
T ss_dssp             SSCCCEEEETTEECCCS-----TTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT---EEEEEEEEEEC
T ss_pred             CCceEEEEEeecccCCC-----CCccEEEEEeCCccEEEECccccccCEEEEEEEec---ceEEEEEEEEE
Confidence            44678999998877542     34566655   346899999999999999999876   35678888864

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-12  Score=71.01  Aligned_cols=68  Identities=25%  Similarity=0.395  Sum_probs=48.7

Q ss_pred             EeccCCC-CcEEEEEeCCEE-EEecccccCCCCCEEEE---------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103          4 LSGLPDK-NYVLAWKRGIAI-LTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus         4 ~~~~~~~-~~~v~W~k~~~~-l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      ++|.|.. .+.|.|+|++.. +...     ...|+...         ..++|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus        28 v~g~p~~~~p~v~W~k~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  102 (110)
T d2avga1          28 VAGASLLKPPVVKWFKGKWVDLSSK-----VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNF  102 (110)
T ss_dssp             EECCSCSSSCEEEEECSTTCCSTTT-----CSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEE
T ss_pred             ecCCCCCCCCEEEEEeCceeeeccc-----CCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEE
Confidence            4666653 578999996532 2211     22333322         2367999999999999999999987 5888999


Q ss_pred             EEEEE
Q psy14103         72 TLEIL   76 (78)
Q Consensus        72 ~L~V~   76 (78)
                      +|.|.
T Consensus       103 ~L~V~  107 (110)
T d2avga1         103 NLTVH  107 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99886

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2e-11  Score=67.27  Aligned_cols=65  Identities=26%  Similarity=0.448  Sum_probs=46.1

Q ss_pred             EeccCCCCcEEEEEe-CCEEEEecccccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeeccCC--ceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKR-GIAILTAGSTKVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTLEP--KEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-~~~~l~~~~~~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~L~V   75 (78)
                      +.|.|. .+.|.|+| ++..+..      ..+|+.+.    ...+|.|.+++.+|+|.|+|.+.|...  .+.++.|+|
T Consensus        24 v~g~p~-~~~v~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          24 VAGDAK-DKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             ECCCSC-CCEEEEECTTSCEECC------BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             EEeccC-CCEEEEEEeeeeeeee------ccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence            455553 25899998 4555432      35677764    346899999999999999999998742  345666666

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-12  Score=68.90  Aligned_cols=55  Identities=16%  Similarity=0.329  Sum_probs=43.8

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      +.+.|.|+|++..+              ...+.+|.|.+++.+|+|.|+|.+.|. +..+..++|.|+|+
T Consensus        27 p~P~i~W~~~~~~~--------------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          27 SSPSVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             CCCEEEEECTTCCE--------------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             CchheEEEeecccc--------------eeeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence            34689999854322              224457999999999999999999987 48889999999885

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.8e-12  Score=70.81  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=38.0

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +.+.|.|+|++..|..      ...|+ ...+..|.|.+++.+|+|.|+|.+.+.
T Consensus        33 p~P~i~W~kdg~~l~~------~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2          33 ELPKLQWYKDCKPLLL------DNIHF-SGVKDRLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             BCCCCEEEETTEECCC------CSSSE-EEETTEEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCCEEEEEECCccccC------CCcEE-EecCCEEEEcccccccCcEEEEEEEEC
Confidence            4468999999998853      23445 445578999999999999999999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.9e-12  Score=70.82  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=44.1

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L   73 (78)
                      .+.+.|.+++..+..      .++|+.+..+++|.|.+++.+|+|.|+|++.+.. ..+....|
T Consensus        25 ~~~v~W~~~g~~l~~------~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1          25 LARVFWKFQNGVLKA------ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             TCEEEEEESSSBCCC------CSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             CCceeeecCccccee------eeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            468999998766643      3567877788899999999999999999999863 44444443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.4e-12  Score=70.83  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE----------cCeEEEEccCCCCCCEEEEEEeecc-CCceEEE
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV----------DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITH   71 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~----------~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~   71 (78)
                      .+.|.|..  .|.|+|++..|..+       .++...          ....|.|.+++.+|+|.|+|.+.|. +..+..+
T Consensus        23 ~v~G~P~P--~v~W~~ng~~l~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          23 SVDGQPAP--SLRWLFNGSVLNET-------SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             EECCSSCC--EEEEEETTEECCCC-------SSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEecCC--eEEEEEeeeEccCc-------cceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            45677764  89999999888543       233221          1256999999999999999999997 4677777


Q ss_pred             EEEEEe
Q psy14103         72 TLEILG   77 (78)
Q Consensus        72 ~L~V~g   77 (78)
                      .|.|+.
T Consensus        94 ~v~v~~   99 (107)
T d1he7a_          94 MAAFMD   99 (107)
T ss_dssp             EECCCS
T ss_pred             EEEEEc
Confidence            777654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=6.3e-12  Score=68.16  Aligned_cols=57  Identities=28%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      .+.|.|+|++..+.        ..+.. ..+++|.|.+++.+|+|.|+|.+.|. +..+..++|.|+
T Consensus        32 ~~~v~W~k~~~~~~--------~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          32 AYTLVWTRLHNGKL--------PSRAM-DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             CCEEEEEEGGGBCC--------CTTEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCEEEEecCCceee--------ccccE-eeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            36899999764432        34443 34679999999999999999999987 567778888773

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.2e-12  Score=68.84  Aligned_cols=58  Identities=16%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.+.|.|+|++..|..      .+.|+.+.   ...+|.|.+++.+|+|.|+|.+.+   .+.+++|.|.
T Consensus        33 p~~~v~W~k~g~~i~~------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n---~~~s~~l~V~   93 (94)
T d1pd6a_          33 HDAEVKWLKNGQEIQM------SGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG---EKCSTELFVK   93 (94)
T ss_dssp             SSSCCEEEESSSEECC------CSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT---EEECCEEEEE
T ss_pred             CCceEEEEEcCcccee------eeeeEeeeccCCeEEeecCCCCceecEEEEEEEee---EEEEEEEEEE
Confidence            3457899999887753      23556554   456899999999999999999976   3455666664

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.25  E-value=6.7e-12  Score=68.70  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      +.|.|.  +.|.|+|++..+         ..++ ...+.+|.|.+++.+|+|.|+|.+.|. +..+..++|.|.
T Consensus        29 ~~g~P~--p~i~W~k~~~~~---------~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          29 AFGNPV--PQIKWRKLDGSQ---------TSKW-LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEESC--CEEEEEECCSCC---------SCCC-SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEccC--CEEEEEeccccc---------ceEe-eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            456665  479999854211         1122 335679999999999999999999987 477788888875

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-12  Score=72.13  Aligned_cols=64  Identities=14%  Similarity=0.238  Sum_probs=46.7

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      +.+.|.|+|++..+....   ....|+.. .+++|.|.+++.+|+|.|+|.+.|. +..+..+.|+|+-
T Consensus        31 ~~~~i~W~k~~~~~~~~~---~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          31 HKGTITWYKDDSKTPVST---EQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             CSSEEEEECSSTTSBCCC---CTTSSEEE-ETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCceEEEEECCccccccc---ccceEEec-cCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            567899999653322110   13344433 5679999999999999999999987 4777889998874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.2e-11  Score=68.08  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=47.4

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ...+.|+|++..|.       ...|+.+. ...+|.|.+++.+|+|.|+|++.|..  ..+..++|+|..
T Consensus        31 ~~~v~W~~~~~~l~-------~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          31 GANIQWLFNSQSLQ-------LTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF   93 (96)
T ss_dssp             SCEEEEEETTEECC-------CCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECC
T ss_pred             CCCEEEEEeeeecc-------cccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEc
Confidence            46899999988774       35677766 56799999999999999999999863  234567888753

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.2e-11  Score=65.82  Aligned_cols=66  Identities=17%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CCcEEEEEeCCEEEEec-cc--cc--CCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAG-ST--KV--TPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~-~~--~~--~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +...|.|.+++..+..- ..  ..  .-..|..+. .+++|+|.+++.+|+|.|+|++.+. ..+...+|.|+
T Consensus        22 p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~-~~t~~~~l~V~   93 (93)
T d1ccza1          22 PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI-TDTMKFFLYVL   93 (93)
T ss_dssp             CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC-CSCEEEEEEEE
T ss_pred             CCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC-CcEEEEEEEEC
Confidence            34578999976554321 11  11  123455554 6789999999999999999998874 45666777774

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.1e-12  Score=68.16  Aligned_cols=64  Identities=17%  Similarity=0.198  Sum_probs=45.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ++|.|.  +.+.|.+++..+..       ..........+|.|.+++.+|+|.|+|.+.|. +..+..++|+|-
T Consensus        25 ~~g~p~--p~i~W~~~~~~~~~-------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          25 TTGCES--PFFSWRTQIDSPLN-------GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EESCSS--CEEEEEETTCCCCS-------SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccCCCC--ceEEEEecCcccee-------eeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            456665  48999986543321       11122235678999999999999999999987 477788888774

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.22  E-value=1e-11  Score=67.99  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.|.+ ..|.|+|++..+..      ...++... .+++|.|.+++.+|+|.|+|.+.|..
T Consensus        26 ~~g~p~p-~~v~W~~~g~~l~~------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1          26 IEGNDQG-VKYSWKKDGKSYNW------QEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             EESCCSS-CEEEEEESSSBCCT------TTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             ecCCCCe-eEEEEEeeeeeeee------ecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            4455543 46899998877743      23344443 56899999999999999999999874

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=1.9e-11  Score=68.58  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+.|.|+|++..+..     ..+.|.... .+++|.|.+++.+|+|.|+|.+.|.
T Consensus        34 ~~~v~W~k~g~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2          34 ALSYRWLLNEFPNFI-----PADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             CCEEEEEESSTTCBC-----CCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCEEEEEEeeccccc-----cccceeeeecCCCEEeecccccccCcEEEEEEEEC
Confidence            468999997654422     234555443 6789999999999999999999975

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.20  E-value=1.7e-11  Score=68.25  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEIL   76 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~   76 (78)
                      ....|.|.+++.+|+|.|+|.+.|. +..+..++|.|+
T Consensus        72 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            3478999999999999999999987 577889999884

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.3e-11  Score=66.15  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=41.2

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEI   75 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V   75 (78)
                      .+.|.|.|.+..+         ..+........|+|.+++.+|+|.|+|.+.+.. ..+..++|.|
T Consensus        33 ~p~v~W~~~~~~~---------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          33 GASVQWRGLDTSL---------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             TCEEEEESSTTTT---------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccEEEEEEeeeee---------eeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence            4689999854322         122333356789999999999999999999864 6677777766

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.19  E-value=2.2e-12  Score=70.69  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             CCCCcEEEEEeCCEEEEecccccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103          8 PDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus         8 ~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.+.+.|.|+|++..+.       .++|+.+.   ...+|.|.+++.+|+|.|+|.+.+.   ...++|.|.
T Consensus        26 s~p~~~v~W~k~g~~i~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~l~V~   87 (89)
T d1tiua_          26 SEPDVHGQWKLKGQPLT-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA---KSAANLKVK   87 (89)
T ss_dssp             SSSSCCCBCCSSSCCCC-------SSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC---BCCEEEEEE
T ss_pred             CCCCcEEEEEEeeeecc-------cceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce---EEEEEEEEE
Confidence            34456889999887764       45778776   3468999999999999999998774   335677764

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.16  E-value=2.9e-11  Score=66.58  Aligned_cols=64  Identities=30%  Similarity=0.432  Sum_probs=48.4

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~   74 (78)
                      ++|.|.  +.+.|+|++..+...     .+.++.......|.|..++.+|+|.|+|.+.|.. . .+..++|.
T Consensus        31 ~~g~P~--p~v~W~~ng~~i~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          31 ARANPP--ATYRWKMNGTELKMG-----PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEESC--CEEEEEETTEECCCS-----TTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEeCC--CEEEEEEeeeeccCC-----CCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            456665  589999999887543     3456666677889999999999999999999874 2 34556664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=7.5e-11  Score=65.90  Aligned_cols=66  Identities=12%  Similarity=0.202  Sum_probs=44.9

Q ss_pred             CcEEEEEeCCEEEEecccc---cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCc--eEEEEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTK---VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPK--EITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~--~~~~~L~V~   76 (78)
                      .+.|.|+|++..+......   ...+.++... ....|.|.+++.+|+|.|+|++.|. +..  +..++|+|.
T Consensus        32 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          32 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            4689999988766433221   1233444443 5678999999999999999999986 333  446677764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.6e-11  Score=66.51  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLEIL   76 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~V~   76 (78)
                      ++|.|. .+.|.|+|++..+...    ....+....     ....|.|.+++.+|+|.|+|.+.|.. . .+..++|.|.
T Consensus        27 v~g~p~-~P~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          27 VKYCAN-RPHVTWCKLNGTTCVK----LEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EECSSS-CCEEEEEEECSSCEEE----CCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEeeCC-CCEEEEEecCcccccc----cceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            455553 2589999965333211    112222222     23469999999999999999999864 3 2456777775

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.6e-10  Score=63.85  Aligned_cols=69  Identities=16%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             EeccCCCCcEEEEEeC-CE-EE--Eeccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCce--EEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRG-IA-IL--TAGST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKE--ITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-~~-~l--~~~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~--~~~~L~V   75 (78)
                      ++|.|.  +.|.|+|+ .. ..  ..+.. ......|+.. .+.+|.|.+|+.+|+|.|+|.+.+. +...  ..++|.|
T Consensus        25 ~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          25 YSGFSS--PRVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EESCSS--EEEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             cCCCCC--CeEEEEeccccceeeeccccccccceeeEEEe-cCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            466665  48999982 22 11  22221 1223456655 4568999999999999999999976 4444  4455554

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.12  E-value=7.3e-11  Score=64.37  Aligned_cols=56  Identities=11%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEeC
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILGF   78 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g~   78 (78)
                      ...+.|+|++..+...            ..+..|.|.+++.+|+|.|+|.+.+..  ..+..+.|.|.++
T Consensus        30 ~~~~~W~k~g~~~~~~------------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          30 LVKVTFFQNGKSKKFS------------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             CEEEEEEETTEEEEEE------------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             CcEEEEEeeccccccc------------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            4689999998876431            134679999999999999999999874  2356788888764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=64.28  Aligned_cols=66  Identities=21%  Similarity=0.354  Sum_probs=46.4

Q ss_pred             EeccCCCCcEEEEEeCC----EEEEecccccCCCCCEEEE---cCeEEEEccCC-CCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGI----AILTAGSTKVTPDKRIQLV---DGYNLQITDLQ-TTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~----~~l~~~~~~~~~~~R~~~~---~~~sL~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      ++|.|.. ..+.|+|+.    ..+..     ....||.+.   ....|.|.+++ .+|+|.|+|.+.|. +..+..+.|.
T Consensus        26 v~g~P~p-~~i~W~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~   99 (101)
T d3b5ha1          26 SESVPPV-TDWAWYKITDSEDKALMN-----GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR   99 (101)
T ss_dssp             CCCSSCC-CEEEEEECCSSSCEECCT-----TGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEecCCe-eEEEEEeccceeeeeccc-----CCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            3455543 368999843    22211     235678765   34689999998 57999999999987 4777888887


Q ss_pred             E
Q psy14103         75 I   75 (78)
Q Consensus        75 V   75 (78)
                      |
T Consensus       100 V  100 (101)
T d3b5ha1         100 V  100 (101)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=5.8e-11  Score=67.11  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=47.8

Q ss_pred             ccCCCCcEEEEEeCC------EEEEec---cccc---CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEE
Q psy14103          6 GLPDKNYVLAWKRGI------AILTAG---STKV---TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITH   71 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~------~~l~~~---~~~~---~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~   71 (78)
                      +.|.....+.|.|+.      .+....   +...   .-.+|..+..+++|+|.+|+.+|+|.|+|++.+..  ..+..+
T Consensus        23 ~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v  102 (107)
T d1l6za1          23 NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATV  102 (107)
T ss_dssp             SCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCE
T ss_pred             CCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEE
Confidence            455566789999832      222211   1011   12469999999999999999999999999998654  344556


Q ss_pred             EEEE
Q psy14103         72 TLEI   75 (78)
Q Consensus        72 ~L~V   75 (78)
                      +|.|
T Consensus       103 ~L~V  106 (107)
T d1l6za1         103 RFHV  106 (107)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            6654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=9.9e-10  Score=62.22  Aligned_cols=70  Identities=20%  Similarity=0.378  Sum_probs=47.1

Q ss_pred             CCCCcEEEEEeCC---EE-EE-ecccc-----cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC-CceEE
Q psy14103          8 PDKNYVLAWKRGI---AI-LT-AGSTK-----VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEIT   70 (78)
Q Consensus         8 ~~~~~~v~W~k~~---~~-l~-~~~~~-----~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~   70 (78)
                      +.....|.|+|..   .. +. .+...     .....|..+.      ++++|+|.+|+.+|+|.|+|++.+.. ..+..
T Consensus        31 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~  110 (126)
T d1pkoa_          31 NATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA  110 (126)
T ss_dssp             CCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEE
Confidence            3456789999842   11 22 22111     1233566654      36899999999999999999999763 66777


Q ss_pred             EEEEEEe
Q psy14103         71 HTLEILG   77 (78)
Q Consensus        71 ~~L~V~g   77 (78)
                      ++|.|..
T Consensus       111 v~L~V~~  117 (126)
T d1pkoa_         111 VELKVED  117 (126)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8888875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.08  E-value=2e-10  Score=62.79  Aligned_cols=55  Identities=15%  Similarity=0.046  Sum_probs=41.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEE
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEIL   76 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~   76 (78)
                      +...+.|+|++..+...            ..+..|.|.+|+.+|+|.|+|.+.+..  ..+..+.|+|.
T Consensus        31 p~~~~~W~kng~~~~~~------------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          31 ALHKVTYLQNGKDRKYF------------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             CCEEEEEEETTEEEEEE------------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCcEEEEEEccccccee------------ccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            34589999998776431            234588999999999999999999763  33566777774

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.2e-10  Score=62.79  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             CeEEEEccCCCCCCEEEEEEeeccC-C-ceEEEEEEEE
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTLE-P-KEITHTLEIL   76 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~L~V~   76 (78)
                      .++|.|.+|+.+|+|.|+|.+.|.. . .+..+.|.|.
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            3679999999999999999999874 3 4566888873

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.6e-11  Score=66.54  Aligned_cols=63  Identities=13%  Similarity=0.243  Sum_probs=42.2

Q ss_pred             CcEEEEEeCCEEEEecccc--cCCCCCEEEE-cCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEE
Q psy14103         11 NYVLAWKRGIAILTAGSTK--VTPDKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTL   73 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~--~~~~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L   73 (78)
                      .+.+.|+|++..+......  .....++... ....|.|.+++.+|+|.|+|.+.|. +.....+.+
T Consensus        32 ~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v   98 (104)
T d1nbqa2          32 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV   98 (104)
T ss_dssp             CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCB
T ss_pred             CCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEE
Confidence            4589999987766443221  1223333332 4578999999999999999999987 444444333

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.7e-10  Score=63.71  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             EeccCCCCcEEEEEeCCEEEEe----ccc-ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTA----GST-KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLE   74 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~----~~~-~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~   74 (78)
                      ++|.|.  +.|.|+|++..+..    ... ......|+.. .+.+|.|.+++.+|+|.|+|.+.|. +.....++|+
T Consensus        28 ~~g~p~--p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          28 YSGFSS--PRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             EESCSS--EEEEEEEEETTEEEESEETTEECTTTTTTCEE-ETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEE
T ss_pred             eCCCCC--CeeEEEeeeeceeeeeeccceeeccccceeee-cCceEEEecccccceeeEEEEEEECCCCEEEEEEEE
Confidence            456664  58999984322111    111 1233455544 3568999999999999999999986 4444444443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.4e-10  Score=61.29  Aligned_cols=56  Identities=16%  Similarity=0.272  Sum_probs=43.0

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEEEe
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V~g   77 (78)
                      ....+.|+|++..+...            .....|.|.+++.+|+|.|.|++.+..  ..+..+.|+|..
T Consensus        29 ~~~~~~w~k~g~~~~~~------------~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          29 DVYKVIYYKDGEALKYW------------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK   86 (89)
T ss_dssp             CEEEEEEEETTEECCSC------------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCeEEEEEEeeeccccc------------cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEe
Confidence            34689999999877431            124579999999999999999999863  446777888865

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.1e-10  Score=60.80  Aligned_cols=63  Identities=22%  Similarity=0.398  Sum_probs=40.7

Q ss_pred             CCcEEEEEeC--CEEEEecccc-----cCCCCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         10 KNYVLAWKRG--IAILTAGSTK-----VTPDKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~--~~~l~~~~~~-----~~~~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      ....+.|++.  ..++......     ..-.+|+.+.      .+++|+|++++.+|+|.|+|++.+.   +..+.|.|
T Consensus        22 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~---~~~v~L~V   97 (97)
T d2nxyb1          22 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQ---KEEVQLLV   97 (97)
T ss_dssp             SCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTE---EEEEEEEE
T ss_pred             CCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEecC---CeEEEEEC
Confidence            4467899983  2333222111     1234566543      4578999999999999999999763   44555554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.97  E-value=3.1e-10  Score=64.32  Aligned_cols=64  Identities=20%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCE---EEEEEeeccC-CceEEE
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAG---SYQCQIGTLE-PKEITH   71 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G---~Y~C~~~~~~-~~~~~~   71 (78)
                      |.|.  +.|.|+|++..+...........|+.+..+++|.|.+|+.+|+|   .|+|.+.|.. ..+...
T Consensus        29 G~P~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~   96 (111)
T d1biha2          29 AYPK--PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL   96 (111)
T ss_dssp             EESC--CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEE
T ss_pred             CCCC--CEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEE
Confidence            4444  58999996433322222223456787888899999999999887   6999999973 444443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-11  Score=67.25  Aligned_cols=64  Identities=9%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeecc-CCceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGTL-EPKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~-~~~~~~~~L~V   75 (78)
                      +.|.|..  .|.|+|++..+...      ..++.......|.|.+++.+|.| .|+|.+.|. +..+..+.|.|
T Consensus        26 ~~g~P~p--~v~W~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          26 VEGRGLE--QAGWILTELEQSAT------VMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EECSSCC--CCCEEESCCCSSEE------ECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             ccCCCCc--EEEEEECCceeeee------eeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            5677665  67999976544321      12222335678999999999999 799999987 46677777665

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.9e-10  Score=60.19  Aligned_cols=56  Identities=14%  Similarity=0.103  Sum_probs=41.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-CCceEEEEEEEEeC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-EPKEITHTLEILGF   78 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~L~V~g~   78 (78)
                      ++|.|..  .|.|+|++..+..       ..          .|.+++.+|+|.|+|.+.|. +..+..++|+|+.+
T Consensus        28 a~G~P~P--~v~W~k~g~~~~~-------~~----------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          28 AWGNPLP--ELKCLKDGTFPLP-------IG----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             CEEESCC--EEEEEETTTEECC-------TT----------SCEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EeEcCcc--EEEEEEeecccee-------ee----------eeeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            4566665  8899997755421       11          24567889999999999987 47788999999864

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=6e-09  Score=58.40  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=33.0

Q ss_pred             CCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEEE
Q psy14103         33 DKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V~   76 (78)
                      .+|+.+.     ++.+|+|.+++.+|+|.|.|.+.+.+   .....++|.|.
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             TTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             eeEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            3688765     45799999999999999999998743   34455677664

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.8e-09  Score=58.40  Aligned_cols=44  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCEEEE------cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEE
Q psy14103         33 DKRIQLV------DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEIL   76 (78)
Q Consensus        33 ~~R~~~~------~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~   76 (78)
                      .+|+.+.      .+.+|+|.+++.+|+|.|.|.+.+.. ..+..++|.|+
T Consensus        73 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          73 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccceEEEccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4677765      34789999999999999999998764 66777888875

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.7e-11  Score=66.22  Aligned_cols=61  Identities=20%  Similarity=0.318  Sum_probs=46.2

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEE----cC---eEEEEccCCCCC-CEEEEEEeecc-CCceEEEEEEEEe
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLV----DG---YNLQITDLQTTD-AGSYQCQIGTL-EPKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~----~~---~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~L~V~g   77 (78)
                      ..+.|++++..+..+     ...|+.+.    .+   .+|.|.+++.+| +|.|+|.+.|. +..+..++|.|.|
T Consensus        37 ~~v~W~~~~~~i~~~-----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          37 DRIAWSWKENVLESG-----TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             SEEEEESSSCEECSE-----EETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             eEEEEeeeeeeEeee-----eeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence            478999987776443     23566543    11   469999999999 79999999987 5778888888765

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.3e-09  Score=59.68  Aligned_cols=66  Identities=23%  Similarity=0.379  Sum_probs=45.8

Q ss_pred             cEEEEEeC-----CEEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC-CceEEEEEEEEe
Q psy14103         12 YVLAWKRG-----IAILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHTLEILG   77 (78)
Q Consensus        12 ~~v~W~k~-----~~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~L~V~g   77 (78)
                      ..+.|+|.     ...+.....  .....+|+.+.     .+.+|+|.+++.+|+|.|.|.+.... .....++|+|+.
T Consensus        32 ~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          32 TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             SCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             eeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            46789872     123322222  22456788765     45899999999999999999998553 556678888864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.3e-08  Score=56.78  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=38.2

Q ss_pred             CCcEEEEEeC---C---EEEEec-ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG---I---AILTAG-STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~---~---~~l~~~-~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.   .   .++... .......+|+.+.     +..+|+|.+++++|+|.|.|.+...
T Consensus        26 ~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          26 LYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            3456789872   1   233322 2233456888765     4589999999999999999998854

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.3e-09  Score=58.00  Aligned_cols=58  Identities=17%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC--CceEEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE--PKEITHTLEI   75 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~L~V   75 (78)
                      +.|.|.+ ..|.|+|++..+....             ...+.|..+..+|+|.|+|.+.|..  ..+..++|+|
T Consensus        25 ~~g~P~P-~~i~W~k~g~~i~~~~-------------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          25 AVGPPEP-VTIVWWRGTTKIGGPA-------------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EECSSSC-CEEEEEETTEECSCSE-------------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EecCCcc-eEEEEEECCEECCCCC-------------CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            3455532 3799999988774311             1234455566689999999999874  3355677766

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.1e-08  Score=56.96  Aligned_cols=42  Identities=33%  Similarity=0.665  Sum_probs=31.5

Q ss_pred             CEEEE-cCeEEEEccCCCCCCEEEEEEeeccCC------ceEEEEEEEE
Q psy14103         35 RIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEP------KEITHTLEIL   76 (78)
Q Consensus        35 R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~------~~~~~~L~V~   76 (78)
                      |.... ++.+|+|++|+.+|+|.|.|++...++      ....+.|.|+
T Consensus        61 r~~~~~~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          61 RTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             SEEEETTTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEeccCCeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            33443 678999999999999999999985532      2456667665

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.82  E-value=1.5e-08  Score=55.55  Aligned_cols=55  Identities=24%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             CCcEEEEEe-----CCEE-EEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKR-----GIAI-LTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k-----~~~~-l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|     ..+. +.........++||+..     ...+|+|++++++|+|.|.|.+...
T Consensus        14 ~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          14 GSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             cCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            345789987     2233 33333333467899875     3478999999999999999998743

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.82  E-value=2.7e-08  Score=56.07  Aligned_cols=68  Identities=21%  Similarity=0.226  Sum_probs=44.2

Q ss_pred             CCcEEEEEe-----CCEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCce----EEEEEEE
Q psy14103         10 KNYVLAWKR-----GIAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKE----ITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k-----~~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~~L~V   75 (78)
                      ++..+.|+|     ....|.....  .....+||...   ..++|.|++++++|+|.|.|.........    .-.+|+|
T Consensus        30 ~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~~~~~~~FG~GT~ltV  109 (111)
T d1rzfl1          30 GNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVVFGGGSKVTV  109 (111)
T ss_dssp             CTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEETTTTEEEEBCCEEEEE
T ss_pred             cCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEeecCCCCCCCEECCCeEEEE
Confidence            455799997     2344432221  22356788775   45899999999999999999876432211    2236666


Q ss_pred             Ee
Q psy14103         76 LG   77 (78)
Q Consensus        76 ~g   77 (78)
                      +|
T Consensus       110 lg  111 (111)
T d1rzfl1         110 LG  111 (111)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.7e-08  Score=55.83  Aligned_cols=53  Identities=19%  Similarity=0.405  Sum_probs=36.8

Q ss_pred             cEEEEEeCCEEE-Eeccc--cc--CCCCCEEEE--cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRGIAIL-TAGST--KV--TPDKRIQLV--DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~~~~l-~~~~~--~~--~~~~R~~~~--~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|.++...+ .....  ..  .-..|..+.  ++++|.|.+++.+|+|.|.|.+.+.
T Consensus        28 ~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1          28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             CEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEEeC
Confidence            578999866443 22111  11  123577665  4679999999999999999999854

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.4e-10  Score=61.50  Aligned_cols=52  Identities=12%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             ccCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      |.|...+.+.|+|++..+..+...   ..    ....+|.|..+..+|.|.|+|++.|.
T Consensus        31 ~~P~p~~~v~W~~~~~~l~~~~~~---~~----~~~s~l~i~~~~~dd~g~ytC~A~n~   82 (103)
T d1iama1          31 GAPRAQLTVVLLRGEKELKREPAV---GE----PAEVTTTVLVRRDHHGAQFSCRTELD   82 (103)
T ss_dssp             CBCGGGEEEEEEETTEEEEEEECC---TT----TEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred             CCCCCceEEEEccccccccccccc---cc----cceEEEEEeeehhHCCCEEEEEEEeC
Confidence            356666789999999888643211   11    13458999999999999999999986

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.4e-08  Score=57.36  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=28.8

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      -.+|+.+.     ++.+|+|.+|+++|+|.|.|.+..++
T Consensus        68 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          68 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             TTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             cceEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeCC
Confidence            35688876     46799999999999999999998654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.75  E-value=7.8e-08  Score=54.10  Aligned_cols=68  Identities=21%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             CCcEEEEEeC-----CEEEEec-cc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCce----EEEEEEE
Q psy14103         10 KNYVLAWKRG-----IAILTAG-ST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKE----ITHTLEI   75 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~~~-~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~~L~V   75 (78)
                      ....+.|+|.     ...+... .. .....+||+..   +..+|.|.+++++|+|.|+|.........    .-.+|.|
T Consensus        31 ~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~~~~~FG~GTkLtV  110 (112)
T d1lgva1          31 SYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLTV  110 (112)
T ss_dssp             CCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSSSEEEBCCEEEEE
T ss_pred             CCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEeeecCCCCCCEeCcCEEEEE
Confidence            3456899981     2333222 11 22456788765   56899999999999999999876433221    3346777


Q ss_pred             Ee
Q psy14103         76 LG   77 (78)
Q Consensus        76 ~g   77 (78)
                      +|
T Consensus       111 lg  112 (112)
T d1lgva1         111 LG  112 (112)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.74  E-value=8.5e-09  Score=55.36  Aligned_cols=48  Identities=19%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEI   75 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V   75 (78)
                      .+.|+|++..+..              .+.+|.|.+++.+|+|.|+|++.+. ..+..++|+|
T Consensus        37 ~~~~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~a~~s-~~S~~v~L~V   84 (84)
T d1fnla1          37 STQWFHNESLISS--------------QASSYFIDAATVNDSGEYRCQTNLS-TLSDPVQLEV   84 (84)
T ss_dssp             CCEEEETTEEEES--------------SCSEEEESSCCGGGCEEEEEECSSS-CCCCCEEEEE
T ss_pred             EEEEeeeceeeee--------------cceeeEecCCcccCCEEEEEEccCC-CccccEEEEC
Confidence            3456777766542              3357999999999999999999863 4456677765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.9e-08  Score=55.54  Aligned_cols=68  Identities=10%  Similarity=0.144  Sum_probs=42.5

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccccCCCCCEEEE---------cCeEEEEccCCCCCCE-EEEEEeecc-CCceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLV---------DGYNLQITDLQTTDAG-SYQCQIGTL-EPKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~---------~~~sL~I~~v~~~D~G-~Y~C~~~~~-~~~~~~~~   72 (78)
                      ++|.|..  .|.|++++..+....... ...+....         -...|+|.+++.+|.| .|+|.|.|. +..+..++
T Consensus        26 v~g~P~p--~i~W~~~g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~  102 (107)
T d1iray3          26 VTGQLSD--IAYWKWNGSVIDEDDPVL-GEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ  102 (107)
T ss_dssp             EEECTTC--EEEEEETTEECCTTCSSE-EEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEE
T ss_pred             eccCCCC--eEEEEECCccccccccee-eeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEE
Confidence            4566654  799999887764321100 00000000         1247999999999999 599999996 45555555


Q ss_pred             EE
Q psy14103         73 LE   74 (78)
Q Consensus        73 L~   74 (78)
                      |.
T Consensus       103 L~  104 (107)
T d1iray3         103 LI  104 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.71  E-value=8.2e-08  Score=54.56  Aligned_cols=72  Identities=18%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             cCCCCcEEEEEeC-----CEEEE-eccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCce----EEEE
Q psy14103          7 LPDKNYVLAWKRG-----IAILT-AGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKE----ITHT   72 (78)
Q Consensus         7 ~~~~~~~v~W~k~-----~~~l~-~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~~   72 (78)
                      .......+.|+|.     ...|. .... .....+||...   .+.+|.|.+++.+|+|.|+|.........    .-.+
T Consensus        27 ~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~~~~~~~~FG~GT~  106 (114)
T d2rhea_          27 TDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAAWNDSLDEPGFGGGTK  106 (114)
T ss_dssp             TTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEECCCEE
T ss_pred             ccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEeecCCCCCCCEECCCeE
Confidence            3334567999982     23343 2222 12355788875   46899999999999999999976432221    3457


Q ss_pred             EEEEeC
Q psy14103         73 LEILGF   78 (78)
Q Consensus        73 L~V~g~   78 (78)
                      |+|+|+
T Consensus       107 LtVlg~  112 (114)
T d2rhea_         107 LTVLGQ  112 (114)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            777763

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3.1e-08  Score=56.07  Aligned_cols=55  Identities=24%  Similarity=0.512  Sum_probs=38.8

Q ss_pred             CCcEEEEEe---CC---EEEEec--ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKR---GI---AILTAG--STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k---~~---~~l~~~--~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+..+.|+|   +.   .++...  ......++||.+.     ...+|.|.+++++|+|.|.|.+...
T Consensus        28 ~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          28 EDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             TTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            346799998   11   233322  2223577899876     3478999999999999999998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=7.7e-08  Score=54.17  Aligned_cols=54  Identities=24%  Similarity=0.400  Sum_probs=38.6

Q ss_pred             CcEEEEEe---C---CEEEEec-ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR---G---IAILTAG-STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k---~---~~~l~~~-~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|   +   ..++... .......+||...     ..++|+|.+++.+|+|.|.|.+...
T Consensus        29 ~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          29 FSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             CSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             ccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            35789997   1   2333322 2223456888775     5689999999999999999998864

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.66  E-value=7.9e-09  Score=55.53  Aligned_cols=50  Identities=18%  Similarity=0.297  Sum_probs=37.5

Q ss_pred             cEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         12 YVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        12 ~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      ..+.|+|++..+..              .+..|.|.+++.+|+|.|.|++.+. ..+..++|+|.
T Consensus        35 ~~~~w~~~g~~~~~--------------~~~~l~i~~v~~~dsG~Y~C~a~ns-~~S~~v~l~V~   84 (85)
T d2fcba1          35 DSIQWFHNGNLIPT--------------HTQPSYRFKANNNDSGEYTCQTGQT-SLSDPVHLTVL   84 (85)
T ss_dssp             TCCEEEETTEECTT--------------CCSSEEEEECCGGGCEEEEEECTTS-BCCCCEEEEEE
T ss_pred             eEEEeecccccccc--------------cccceEEeeccccCCcEEEEECCCC-cccccEEEEEE
Confidence            35678888877632              2347899999999999999999874 34556677775

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.6e-08  Score=54.00  Aligned_cols=48  Identities=21%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             EEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEEEE
Q psy14103         14 LAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLEIL   76 (78)
Q Consensus        14 v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~V~   76 (78)
                      +.|+|++..+..              .+..|.|.+++.+|+|.|.|++.+. ..+..++|+|.
T Consensus        34 ~~~~~~~~~~~~--------------~~~~l~i~~v~~~d~G~Y~C~a~~s-~~S~~v~l~V~   81 (82)
T d1f2qa1          34 TKWFHNGSLSEE--------------TNSSLNIVNAKFEDSGEYKCQHQQV-NESEPVYLEVF   81 (82)
T ss_dssp             CEEEETTEECSC--------------CSSEEEECSCCGGGCEEEEEECTTS-SCCCCEEEEEE
T ss_pred             eeeeeeeeeeec--------------ccceeEECCCChhhCCcEEEEecCC-CCcccEEEEEE
Confidence            456777765521              3457999999999999999999874 44556778775

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=1.6e-08  Score=57.32  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=43.7

Q ss_pred             CCcEEEEEe---CC--EE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEEEEEEe
Q psy14103         10 KNYVLAWKR---GI--AI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHTLEILG   77 (78)
Q Consensus        10 ~~~~v~W~k---~~--~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~L~V~g   77 (78)
                      .+..|.|+|   +.  +. +...... ....+||...   .+.+|.|.+++++|+|.|.|........  -.-.+|+|+|
T Consensus        31 ~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVlg  110 (110)
T d1oaql_          31 TSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLG  110 (110)
T ss_dssp             GGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             ceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEEcccCCCCEECCCeEEEECC
Confidence            345589998   22  22 3322221 2356799875   6689999999999999999997643211  1234566665

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.64  E-value=1.5e-07  Score=52.67  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             CcEEEEEe-----CCEEEE-ecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR-----GIAILT-AGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l~-~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|     ....+. ..... ....+||+..   ++++|+|++++.+|+|.|.|.....
T Consensus        30 ~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          30 DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN   93 (106)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecCcc
Confidence            34689997     123332 22222 2467899875   5689999999999999999987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.61  E-value=1.7e-07  Score=52.93  Aligned_cols=55  Identities=20%  Similarity=0.402  Sum_probs=37.5

Q ss_pred             CCcEEEEEe---C--CEEE-Eecccc----cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKR---G--IAIL-TAGSTK----VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k---~--~~~l-~~~~~~----~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|   +  .+.| ......    ....+||++.     ..++|+|.+++.+|+|.|.|.+...
T Consensus        29 ~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          29 SNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             cCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccccceeeEecC
Confidence            346789987   2  2333 222111    1255799875     3378999999999999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.60  E-value=3e-07  Score=51.75  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=43.5

Q ss_pred             CcEEEEEe-----CCEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeeccCCce----EEEEEEEE
Q psy14103         11 NYVLAWKR-----GIAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTLEPKE----ITHTLEIL   76 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~~L~V~   76 (78)
                      ...+.|+|     ....| ...... ....+|+...   ...+|.|.+++.+|+|.|.|.........    .-.+|+|+
T Consensus        29 ~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~~~~~~~FG~GTkLtVl  108 (109)
T d1w72l1          29 SRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDSRTDHWVFGGGTDLTVL  108 (109)
T ss_dssp             GSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC
T ss_pred             CcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecCCCCCCcEECCCeEEEEC
Confidence            45689997     22333 322221 2346788765   56899999999999999999976432221    34567776


Q ss_pred             e
Q psy14103         77 G   77 (78)
Q Consensus        77 g   77 (78)
                      |
T Consensus       109 g  109 (109)
T d1w72l1         109 G  109 (109)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=6.9e-08  Score=54.04  Aligned_cols=54  Identities=24%  Similarity=0.339  Sum_probs=37.9

Q ss_pred             CCcEEEEEeC-----CEEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.     ...+ ..... ....+.||+..   .+++|+|.+++++|+|.|.|....
T Consensus        29 ~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          29 IGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            3456899981     2333 22222 22356899876   568999999999999999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=5.5e-07  Score=49.41  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ..+|+.+.     .+.+|+|.+|+.+|+|.|.|.+...+
T Consensus        64 ~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          64 FRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             TTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             cCCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeCC
Confidence            46788876     56789999999999999999998643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.5e-08  Score=53.61  Aligned_cols=55  Identities=27%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             CCcEEEEEeC-----CEEEEeccc--cc---CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAILTAGST--KV---TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~~~~~--~~---~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|.|.     ...|...+.  ..   ...+||++.     +..+|+|.+++.+|+|.|.|.+...
T Consensus        29 ~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          29 ASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             TTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCT
T ss_pred             CCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEEEEECC
Confidence            3457899981     233432211  11   133689875     2378999999999999999998754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.58  E-value=1e-07  Score=53.44  Aligned_cols=71  Identities=18%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             cCCCCcEEEEEeC-----CEEEEeccc-c-cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeeccCCc--eEEEE
Q psy14103          7 LPDKNYVLAWKRG-----IAILTAGST-K-VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTLEPK--EITHT   72 (78)
Q Consensus         7 ~~~~~~~v~W~k~-----~~~l~~~~~-~-~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~   72 (78)
                      .......+.|+|.     ...+..... . ....+||...     +..+|.|++++++|+|.|.|........  -.-..
T Consensus        27 ~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~~~~~FG~GT~  106 (111)
T d1cd0a_          27 GNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDARNVVFGGGTR  106 (111)
T ss_dssp             SCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEBCCEE
T ss_pred             CCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEeeccCCCCEECCCeE
Confidence            3333456899882     122222211 1 2345788765     4579999999999999999987643221  23456


Q ss_pred             EEEEe
Q psy14103         73 LEILG   77 (78)
Q Consensus        73 L~V~g   77 (78)
                      |+|+|
T Consensus       107 L~Vlg  111 (111)
T d1cd0a_         107 LTVLG  111 (111)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            66765

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.56  E-value=2.5e-07  Score=51.81  Aligned_cols=53  Identities=21%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             CcEEEEEe-----CCEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ....|.....  ......||+..   .++.|.|.+++++|+|.|.|.+..
T Consensus        30 ~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          30 GTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            34689998     2344433222  12356799876   568999999999999999998664

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.55  E-value=1.8e-07  Score=52.68  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             eccCCCCcEEEEEeC-----CEEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          5 SGLPDKNYVLAWKRG-----IAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         5 ~~~~~~~~~v~W~k~-----~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ++-......+.|+|.     ...+.      ...+||...     ..++|+|.+++.+|+|.|.|.+..
T Consensus        25 s~~~~~~~~~~Wyrq~~g~~~~~~~------~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          25 RDASFELKDTGWYRTKLGSTNEQSI------SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             ESCSSCCCEEEEEEEETTCCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCcccCCccceeeeeccccceeee------eecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            333444567899871     12221      245677654     347999999999999999999863

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.55  E-value=1.2e-07  Score=53.61  Aligned_cols=48  Identities=25%  Similarity=0.459  Sum_probs=34.8

Q ss_pred             CCcEEEEEeC-----CEEEEecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAILTAGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l~~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.     ...+.      ..++||...     ...+|+|++++++|+|.|.|.+..
T Consensus        29 ~~~~i~WYrq~~g~~~~~~~------~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          29 ALGSTCWYRKKSGEGNEESI------SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             CCCCEEEEEEETTSCCCEEC------CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             cCCceEEEEeeccceeeeee------ccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            4457899981     22221      345788654     357999999999999999998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.54  E-value=1.3e-06  Score=48.76  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=37.2

Q ss_pred             CCcEEEEEe---C--CEE-EEeccc-----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKR---G--IAI-LTAGST-----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k---~--~~~-l~~~~~-----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...|.|+|   +  .+. +.....     .....+||...    ...+|.|.+++++|+|.|+|.+...
T Consensus        26 ~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (112)
T d1kgce1          26 GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCASSLG   95 (112)
T ss_dssp             TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEeeeCC
Confidence            456899998   1  222 322211     11345688765    3578999999999999999998643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.54  E-value=2.8e-07  Score=52.81  Aligned_cols=59  Identities=19%  Similarity=0.421  Sum_probs=40.6

Q ss_pred             EeccCCCCcEEEEEe-----CCE-EEEec---ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKR-----GIA-ILTAG---STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k-----~~~-~l~~~---~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+-....+.|+|     ..+ ++...   ...   ....+||++.     +...|+|.+++++|+|.|.|...
T Consensus        25 ~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          25 VSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             EESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcEEEEeee
Confidence            567776667899998     123 33322   111   1245799876     23679999999999999999875

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=4e-07  Score=50.92  Aligned_cols=52  Identities=35%  Similarity=0.460  Sum_probs=37.9

Q ss_pred             cEEEEEe-----CCEEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKR-----GIAILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k-----~~~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|     ..+.+......  ....+||+..   .+.+|.|.+++++|+|.|.|.+..
T Consensus        31 ~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          31 SRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             cccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            3589998     12444333221  2466899887   568999999999999999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.53  E-value=1.6e-07  Score=53.05  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             cEEEEEeC-----CEEEEec--ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKRG-----IAILTAG--STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k~-----~~~l~~~--~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|+|.     .+.|...  ........||.+.     ...+|.|.+++++|+|.|.|.+...
T Consensus        31 ~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          31 PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             CCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             CCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            46899882     2333222  2223456788775     3578999999999999999987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.51  E-value=1.6e-07  Score=52.95  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             CCcEEEEEeC-----CEE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|.     .+. +...... ...++||+..   .+++|+|++++++|+|.|.|.+..
T Consensus        33 ~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          33 GYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             SSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEEEECC
Confidence            3445899882     233 3322222 2356799876   568999999999999999998664

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=1.4e-07  Score=52.99  Aligned_cols=54  Identities=24%  Similarity=0.341  Sum_probs=36.7

Q ss_pred             CCcEEEEEeC----C-EEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG----I-AILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~----~-~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.    . ..+.....  .....+|+...   ++++|.|.+++++|+|.|.|.+..
T Consensus        29 ~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          29 ISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             CTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            3456899981    1 22222211  12356778765   568999999999999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.49  E-value=4e-07  Score=51.87  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=40.5

Q ss_pred             eccCCCCcEEEEEe-----CCEEEEecccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          5 SGLPDKNYVLAWKR-----GIAILTAGSTK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         5 ~~~~~~~~~v~W~k-----~~~~l~~~~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +|.+.++..+.|+|     ..+.|......  ....+||+..     +..+|.|.+++++|+|.|.|....
T Consensus        26 s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          26 KGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             CSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             eccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCccc
Confidence            34444556899997     23444433221  2345799865     347999999999999999998764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.7e-08  Score=53.54  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=36.5

Q ss_pred             cCCCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          7 LPDKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         7 ~~~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .|...+.|+|+|++..|..............  ....|.|.....+|.|.|+|+|.+.
T Consensus        30 ~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~--~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          30 EPLDSLTLFLFRGNETLHYETFGKAAPAPQE--ATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             BCGGGEEEEEEETTEEEEEEECCSSTTCTTC--EEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccCCCceEEEEcCCEEeeecccceEeecccc--eeEEEEEeeehhcCCcEEEEEEEec
Confidence            4455678999999988865432211111110  1235777877888888999999976

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=5.2e-07  Score=50.33  Aligned_cols=53  Identities=19%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             CcEEEEEeC---C--EE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG---I--AI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~---~--~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.   .  .. +...... .....||+..   .+.+|+|.+++++|+|.|.|.+..
T Consensus        29 ~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          29 KKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             CCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            346999982   1  22 2322221 2356788875   568999999999999999999764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=3.2e-07  Score=51.35  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             CcEEEEEe---C--CEEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR---G--IAIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k---~--~~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|   +  .+.| ..... ......|+.+.   ...+|.|.+++.+|+|.|.|.+..
T Consensus        28 ~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          28 NEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             TEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEeC
Confidence            45689998   1  2333 32211 12334455544   568899999999999999999763

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.45  E-value=6.3e-07  Score=49.97  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=37.1

Q ss_pred             CcEEEEEeC-----CEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     .+.|.....  .....+||+..   ....|.|.+++++|+|.|.|....
T Consensus        29 ~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          29 ETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            446899982     244422222  12355799876   557899999999999999998664

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.45  E-value=6.3e-07  Score=50.54  Aligned_cols=54  Identities=24%  Similarity=0.360  Sum_probs=38.0

Q ss_pred             CCcEEEEEe-----CCEEE-Eeccc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR-----GIAIL-TAGST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k-----~~~~l-~~~~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|     ....| ..... ......||+..   .+.+|+|.+++.+|+|.|.|....
T Consensus        35 ~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          35 GNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             SCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEEEEECC
Confidence            446799997     22333 32222 23456889876   458999999999999999997554

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=9.9e-07  Score=49.02  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=37.2

Q ss_pred             cEEEEEe-----CCEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKR-----GIAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k-----~~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|     ....| ...... .....||...   ...+|.|.+++++|+|.|.|.+..
T Consensus        31 ~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          31 TYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            4599997     23333 322222 2356889876   678999999999999999999764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5e-07  Score=50.81  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=27.4

Q ss_pred             CCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...||+..   +..+|+|.+++.+|+|.|.|.+..
T Consensus        64 ~~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          64 DTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             CTTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcEEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            45788776   457899999999999999999875

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.1e-06  Score=48.92  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             cEEEEEe-----CCEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKR-----GIAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k-----~~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|     ..+.| ...... .....||+..   .+.+|.|.+++++|+|.|.|....
T Consensus        30 ~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          30 SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            4689997     23433 222221 2356799876   458999999999999999998654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=3.2e-07  Score=51.31  Aligned_cols=53  Identities=25%  Similarity=0.309  Sum_probs=36.8

Q ss_pred             CcEEEEEeC-----CEEEEec-ccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAILTAG-STK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l~~~-~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     ...|... ... ....+||+..   .+.+|.|.+++++|+|.|+|....
T Consensus        30 ~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          30 NSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            456899871     2333222 211 2355799865   558999999999999999998664

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.42  E-value=6.7e-07  Score=50.31  Aligned_cols=54  Identities=20%  Similarity=0.283  Sum_probs=37.6

Q ss_pred             CCcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|.     .. ++...... .....||...   ...+|.|.+++++|+|.|.|....
T Consensus        34 ~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~~~   97 (112)
T d1mjul1          34 GNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQHL   97 (112)
T ss_dssp             SCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEEEEeCC
Confidence            4567999871     23 34433222 2355688765   558899999999999999997553

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.42  E-value=4.4e-07  Score=50.37  Aligned_cols=53  Identities=23%  Similarity=0.384  Sum_probs=34.4

Q ss_pred             CcEEEEEeC-----CEEE-Eec-ccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAIL-TAG-STKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l-~~~-~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     ...+ ... ........|+...     ...+|.|.+++++|+|.|.|.+..
T Consensus        28 ~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          28 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence            346999971     2322 222 1112234566554     457899999999999999999763

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=1.3e-06  Score=49.01  Aligned_cols=53  Identities=26%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CcEEEEEe-----CCEE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ..+. +...... .....||+..   ...+|.|.+++++|+|.|.|.+..
T Consensus        30 ~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          30 YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeeeC
Confidence            34699998     1233 3322221 2356789875   568999999999999999999764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=2e-06  Score=47.90  Aligned_cols=53  Identities=21%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             cEEEEEe-----CCE-EEEecc-cccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         12 YVLAWKR-----GIA-ILTAGS-TKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        12 ~~v~W~k-----~~~-~l~~~~-~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ..+.|+|     ... ++.... ......+||...     ...+|.|.+++.+|+|.|.|.+...
T Consensus        30 ~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   94 (111)
T d1bd2d1          30 DYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAMEG   94 (111)
T ss_dssp             CEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             CeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeeccCC
Confidence            4689997     223 332222 112345788764     4689999999999999999988743

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=2.1e-07  Score=52.23  Aligned_cols=52  Identities=25%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             cEEEEEeC---C---EEEE-ecccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG---I---AILT-AGSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~---~---~~l~-~~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.   .   .++. .........+|+...     ...+|+|.+++.+|+|.|.|.+..
T Consensus        30 ~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          30 YNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEec
Confidence            57899981   1   2222 222222345666554     567999999999999999999874

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.41  E-value=1.4e-06  Score=48.55  Aligned_cols=53  Identities=25%  Similarity=0.358  Sum_probs=37.3

Q ss_pred             CcEEEEEe-----CCEEEEec-cc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAILTAG-ST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l~~~-~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ..+.|... .. ....+.||+..   ...+|+|.+++++|+|.|.|.+..
T Consensus        32 ~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          32 IKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            34689997     23444322 22 22356899875   457899999999999999998764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=4.4e-07  Score=50.85  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=36.5

Q ss_pred             CCcEEEEEe---CC---EEEEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR---GI---AILTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k---~~---~~l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|   +.   .++.....  .....+||.+.     ...+|.|.+++.+|+|.|.|.+..
T Consensus        28 ~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          28 SSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   94 (115)
T ss_dssp             SSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccccceeec
Confidence            345789998   21   23332221  12344788765     347899999999999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.39  E-value=6.1e-07  Score=49.99  Aligned_cols=54  Identities=26%  Similarity=0.385  Sum_probs=38.0

Q ss_pred             CCcEEEEEe-----CCEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR-----GIAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k-----~~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|     ..+.|.....  ......||+..   +..+|.|.+++++|+|.|.|.+..
T Consensus        30 ~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          30 GNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             GGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeeecCC
Confidence            445789998     2344433322  22356788765   457899999999999999998764

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=5.8e-07  Score=50.43  Aligned_cols=60  Identities=20%  Similarity=0.338  Sum_probs=39.2

Q ss_pred             EeccCCCCcEEEEEeC-----CEE---EE-eccc-c--cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG-----IAI---LT-AGST-K--VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~-----~~~---l~-~~~~-~--~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.     ..-   |. .+.. .  ....+||++..     ...|+|.+++.+|++.|+|....
T Consensus        11 ~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~   87 (103)
T d1oari_          11 ASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMW   87 (103)
T ss_dssp             CCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEEEEEEEE
T ss_pred             EECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEEEeEEEC
Confidence            6888888899999982     111   22 1111 1  23568999873     35799999999999999998543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.38  E-value=8e-07  Score=49.99  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             CcEEEEEe-----CCEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ..+.|.....  .....+|++..   ...+|.|.+++++|+|.|.|....
T Consensus        36 ~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          36 KNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEEEecccC
Confidence            35699998     2344433322  12356788765   457899999999999999998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.37  E-value=7.9e-07  Score=49.88  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             CCcEEEEEeC-----CE-EEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IA-ILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~-~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...+.|+|.     .+ ++...... ...+.|+...   .+.+|.|.+++++|+|.|.|.+...
T Consensus        33 ~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          33 GVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             SCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEEeecCC
Confidence            3445999981     23 33322221 2356788876   5689999999999999999987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.37  E-value=6e-07  Score=50.63  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=37.3

Q ss_pred             CCcEEEEEeC-----CEE-EEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAI-LTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~-l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|++.     .+. +...... ....+||+..   .++.|.|.+++++|+|.|+|....
T Consensus        34 ~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          34 GKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             SCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEEEEcCC
Confidence            3457999972     133 3332222 2356789765   567999999999999999997654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.36  E-value=5.3e-07  Score=51.69  Aligned_cols=59  Identities=15%  Similarity=0.273  Sum_probs=42.4

Q ss_pred             EeccCCCCcEEEEEeC----CE----EEE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----IA----ILT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~----~l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++..++.+.|+|.    +.    .|. .+...   ....+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          23 ASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             ESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEEEEeec
Confidence            6899999999999982    21    122 12111   1345899986     23579999999999999999754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=6.3e-08  Score=53.38  Aligned_cols=55  Identities=22%  Similarity=0.391  Sum_probs=36.8

Q ss_pred             CCcEEEEEeC-----C-EEEEe-cccccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----I-AILTA-GSTKVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~-~~l~~-~~~~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ....+.|+|.     . .++.. .+......+||.+.     ...+|.|.+++++|+|.|.|.+...
T Consensus        20 ~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   86 (96)
T d1ymmd1          20 SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTT   86 (96)
T ss_dssp             CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEET
T ss_pred             CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEecC
Confidence            4467999982     1 22222 12223456788764     3468999999999999999987643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=7.5e-07  Score=49.84  Aligned_cols=54  Identities=22%  Similarity=0.447  Sum_probs=35.0

Q ss_pred             CcEEEEEe---C--CEE-EEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR---G--IAI-LTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k---~--~~~-l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|   +  ... +.....  ......|+.+.     ...+|.|.+++.+|+|.|.|.+...
T Consensus        30 ~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          30 TYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGF   96 (114)
T ss_dssp             SCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeCCCC
Confidence            45689987   1  233 322211  11234556553     4579999999999999999987643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.35  E-value=1.3e-06  Score=50.27  Aligned_cols=59  Identities=15%  Similarity=0.390  Sum_probs=41.9

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++..++.+.|+|.    . .-   +..+... .  ...+||++.     +...|+|++++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr~   98 (120)
T d1dn0b1          24 VYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARP   98 (120)
T ss_dssp             EESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEEEEee
Confidence            6899999999999982    1 22   2222111 1  235799987     23679999999999999999644

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=7.7e-07  Score=49.67  Aligned_cols=53  Identities=26%  Similarity=0.444  Sum_probs=35.8

Q ss_pred             CcEEEEEeC-----CEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     ...|.....  ......||...   +..+|.|.+++++|+|.|.|....
T Consensus        30 ~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          30 NNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEECS
T ss_pred             CCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeCC
Confidence            446899971     233322211  22345788654   468999999999999999998653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.34  E-value=1.9e-06  Score=48.00  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=37.2

Q ss_pred             CcEEEEEe-----CCEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ....| ...... .....||+..   ...+|+|.+++++|+|.|.|....
T Consensus        30 ~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          30 TSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            45789998     12333 322222 2356788876   568999999999999999997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.34  E-value=1.2e-06  Score=48.50  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=36.3

Q ss_pred             CcEEEEEe-----CCEEEEecccc--cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GIAILTAGSTK--VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~~~l~~~~~~--~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     ....+......  .....||...   .+.+|.|.+++++|+|.|.|....
T Consensus        28 ~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          28 VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEecC
Confidence            34579998     23444333222  1245778765   558999999999999999998653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.33  E-value=3.5e-06  Score=46.93  Aligned_cols=54  Identities=22%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             CCcEEEEEeC-----C-EEEEeccc-----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----I-AILTAGST-----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~-~~l~~~~~-----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|.     . .++.....     ....+.||...    ...+|+|.+++.+|+|.|.|.+..
T Consensus        26 ~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          26 GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEeeeC
Confidence            4468999982     1 23332211     11356788776    247899999999999999998653

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.33  E-value=1.4e-06  Score=49.82  Aligned_cols=60  Identities=22%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EE-ecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LT-AGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~-~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|+|.    +..    |. .+..+ +  .-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          23 RTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             EEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEEEEeec
Confidence            37899999999999982    211    22 22221 1  245799987     23679999999999999999754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=1.6e-06  Score=48.50  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             CCcEEEEEe---C--CEEE-Eecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR---G--IAIL-TAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k---~--~~~l-~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|+|   +  .+.| ...... ....+||+..   ...+|.|.+++++|+|.|.|.+..
T Consensus        27 ~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          27 PKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             GGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             CCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            334689998   2  2333 222221 2345799876   457999999999999999998764

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.32  E-value=1.6e-06  Score=49.57  Aligned_cols=60  Identities=18%  Similarity=0.418  Sum_probs=42.9

Q ss_pred             EeccCCCCcEEEEEeC---C--EE---EEeccc-cc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG---I--AI---LTAGST-KV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~--~~---l~~~~~-~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.   .  .-   +..+.. ..  .-.+||++.     +...|+|++++.+|++.|+|....
T Consensus        24 ~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          24 VSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNL   99 (116)
T ss_dssp             EESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEEeeeec
Confidence            6889999999999982   1  11   222221 11  235899987     347899999999999999998653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.3e-06  Score=50.00  Aligned_cols=61  Identities=23%  Similarity=0.402  Sum_probs=43.5

Q ss_pred             eEeccCCCCcEEEEEeC----C-EE---EEecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----I-AI---LTAGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~-~~---l~~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||++..+..+.|+|.    + .-   +..+...   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        23 ~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~~   99 (117)
T d1c5db1          23 TVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRED   99 (117)
T ss_dssp             EECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             EEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEEEeccC
Confidence            37889998899999982    2 11   2222221   1345799987     236899999999999999997553

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=2.1e-06  Score=48.87  Aligned_cols=53  Identities=26%  Similarity=0.397  Sum_probs=36.9

Q ss_pred             CcEEEEEeC-----CEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRG-----IAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~-----~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|.     .+.|.....  ......||+..   ...+|.|.+++++|+|.|.|....
T Consensus        30 ~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          30 NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             cceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            456899982     344432222  12356788765   447899999999999999998654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.32  E-value=5e-07  Score=51.91  Aligned_cols=61  Identities=18%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             eEeccCCCCcEEEEEeC----CE----EEE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA----ILT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~----~l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||.+..++.+.|+|.    +.    .|. .+...   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        23 ~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          23 KASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAADP  100 (119)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECT
T ss_pred             EEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEEEEeecC
Confidence            36888988899999982    21    122 22221   1245799987     346799999999999999998654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.31  E-value=8e-07  Score=50.90  Aligned_cols=61  Identities=13%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             EeccCCCCcEEEEEeC----CE--E--EEec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRG----IA--I--LTAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~--~--l~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +||++..++.+.|+|.    +.  +  |..+ ..+   ....+||++.     +...|+|.+++.+|++.|+|.....
T Consensus        24 ~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          24 VSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             EcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEEEEeEcCC
Confidence            6888888889999982    21  1  2212 111   2356899987     2357999999999999999987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=47.96  Aligned_cols=52  Identities=19%  Similarity=0.256  Sum_probs=36.0

Q ss_pred             cEEEEEeC-----CEEEEeccc--ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         12 YVLAWKRG-----IAILTAGST--KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        12 ~~v~W~k~-----~~~l~~~~~--~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|+|.     ...+.....  ......|++..   ....|.|.+++++|+|.|.|.+..
T Consensus        28 ~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          28 QYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             SCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            46899981     233332211  12356788765   558999999999999999998664

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.30  E-value=1.3e-06  Score=50.22  Aligned_cols=60  Identities=15%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             eEeccCCCCcEEEEEeC----C-EEE---Eecc-cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----I-AIL---TAGS-TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~-~~l---~~~~-~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||++..++.+.|+|.    . ..|   ..+. ..   ..-.+||++.     +...|+|++++.+|++.|+|...
T Consensus        23 ~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          23 KASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence            36788888889999982    2 112   2111 11   1235799886     23579999999999999999865

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.30  E-value=1.1e-06  Score=50.39  Aligned_cols=60  Identities=13%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             eEeccCCCCcEEEEEeC---CEE-----EEec-cc-cc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG---IAI-----LTAG-ST-KV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~---~~~-----l~~~-~~-~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|+|.   ..+     |... .. .+  .-.+||++.     +...|+|++++.+|++.|+|.-.
T Consensus        23 ~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          23 KGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCARV   99 (118)
T ss_dssp             EEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceeeeEEEe
Confidence            36889998999999982   211     2211 11 11  224799887     33679999999999999999643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2e-06  Score=48.83  Aligned_cols=31  Identities=19%  Similarity=0.471  Sum_probs=25.8

Q ss_pred             CCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         33 DKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        33 ~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..||+..    ..++|+|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          69 SKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             GGTEEEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEECCCCCEeEEEEcccccCCCEEEEeeEeC
Confidence            4678765    347899999999999999999774

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=9.1e-07  Score=49.88  Aligned_cols=55  Identities=29%  Similarity=0.397  Sum_probs=37.5

Q ss_pred             CCcEEEEEeC---C---EEEEeccc-c-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG---I---AILTAGST-K-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~---~---~~l~~~~~-~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      .+..+.|.|.   .   .++..+.. . .  ...+||++.     +..+|+|.+++.+|+|.|.|.+...
T Consensus        25 ~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          25 ANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHP   94 (110)
T ss_dssp             TTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             cCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEEEEeCC
Confidence            4567899982   1   23333221 1 1  124799986     3378999999999999999998644

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.29  E-value=1.2e-06  Score=50.11  Aligned_cols=61  Identities=23%  Similarity=0.370  Sum_probs=43.5

Q ss_pred             eEeccCCCCcEEEEEeC----CE--E--EE-eccc-c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA--I--LT-AGST-K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~--~--l~-~~~~-~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||++..++.+.|+|.    +.  +  |. .+.. .  ..-.+||++.     +...|+|.+++.+|++.|+|.-..
T Consensus        23 ~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          23 AASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEEEEeecC
Confidence            36899988899999982    11  1  22 1212 1  2356899987     336799999999999999997543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=49.89  Aligned_cols=59  Identities=15%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             EeccCCCCcEEEEEeC---CEE-----EE-ecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG---IAI-----LT-AGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~~~-----l~-~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++..++.+.|+|.   ..+     +. .+... .  ...+||++.     +...|+|++++.+|++.|+|...
T Consensus        24 ~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr~   99 (115)
T d1f3dh1          24 ASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAND   99 (115)
T ss_dssp             EESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEEEEecc
Confidence            6788888889999982   221     21 11111 1  234799986     23579999999999999999754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.29  E-value=2.4e-06  Score=48.96  Aligned_cols=61  Identities=21%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             eEeccCCCCcEEEEEeC----C--EE--EEecc-ccc--CCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----I--AI--LTAGS-TKV--TPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~--~~--l~~~~-~~~--~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||.+..++.+.|+|.    +  .+  +..+. ...  ...+||++..     ...|+|.+++.+|++.|+|....
T Consensus        22 ~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          22 AASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             EEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEeeeecc
Confidence            36888888899999983    1  12  22111 111  2347999872     35799999999999999998653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.28  E-value=1.3e-06  Score=50.60  Aligned_cols=60  Identities=18%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EE-ecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LT-AGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~-~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||++..++.+.|+|.    +..    |. .+... +  .-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        22 ~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          22 KTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCARG   98 (126)
T ss_dssp             EEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEEEEeec
Confidence            37899999999999982    221    22 22221 1  245899986     34789999999999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.28  E-value=2.2e-06  Score=49.08  Aligned_cols=60  Identities=22%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EEecc-c-cc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LTAGS-T-KV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~~~~-~-~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||++..++.+.|.|.    +..    |..++ . .+  .-.+||++.     +...|.|.+++.+|++.|+|.-.
T Consensus        23 ~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          23 KTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEEEEeee
Confidence            47899999999999982    221    33222 1 11  235799887     33689999999999999999764

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.28  E-value=6.7e-07  Score=51.03  Aligned_cols=60  Identities=20%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             EeccCCCCcEEEEEeC----CE--E--EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----IA--I--LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~--~--l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.    +.  +  |. .+..+   ....+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~~~  100 (114)
T d1indh1          24 ASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALYFCASHR  100 (114)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEECGG
T ss_pred             ECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEEEECCCC
Confidence            6888888899999982    21  1  22 22221   1345799987     235799999999999999997543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.28  E-value=2.4e-06  Score=49.04  Aligned_cols=60  Identities=18%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             EeccCCC--CcEEEEEeC----C-E-EEEe--cc-ccc--CCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDK--NYVLAWKRG----I-A-ILTA--GS-TKV--TPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~--~~~v~W~k~----~-~-~l~~--~~-~~~--~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..  .+.+.|+|.    . . ++..  +. ...  ...+||++..     ...|+|.+++++|++.|+|....
T Consensus        24 ~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          24 FSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             EESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             EcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceEEeeEecC
Confidence            4666553  368999982    1 2 2221  11 111  1357999872     37899999999999999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.28  E-value=1.3e-06  Score=49.96  Aligned_cols=61  Identities=25%  Similarity=0.405  Sum_probs=43.2

Q ss_pred             eEeccCCCCcEEEEEeC----C-EEE---Ee-ccccc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----I-AIL---TA-GSTKV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~-~~l---~~-~~~~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||.+..++.+.|+|.    + .-|   .. ++..+  .-.+||++.     +...|+|++++.+|++.|+|.-..
T Consensus        23 ~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          23 TVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             EEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             EEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEEEEEeC
Confidence            36889999999999982    1 212   11 11111  235799887     336799999999999999998654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=8.4e-07  Score=49.80  Aligned_cols=54  Identities=20%  Similarity=0.331  Sum_probs=35.9

Q ss_pred             CcEEEEEe-----CCEE-EEeccc--ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR-----GIAI-LTAGST--KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k-----~~~~-l~~~~~--~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|     ..+. +.....  .....+|+...     ...+|+|.+++++|+|.|.|.+...
T Consensus        29 ~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          29 PPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             ceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence            45799998     1233 332221  12234566654     3568999999999999999998753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.27  E-value=8.1e-07  Score=50.64  Aligned_cols=54  Identities=22%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             CCcEEEEEe---C--C-EEEEeccc--c---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR---G--I-AILTAGST--K---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k---~--~-~~l~~~~~--~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|   +  . .++.....  .   ....+||.+.     ....|+|.+++++|+|.|.|....
T Consensus        31 ~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          31 RSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             GGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECC
T ss_pred             cCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeEEEEEcC
Confidence            445789998   2  2 33332211  1   1244688775     236799999999999999998753

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=2.3e-06  Score=49.01  Aligned_cols=61  Identities=18%  Similarity=0.331  Sum_probs=42.2

Q ss_pred             eEeccCCCCcEEEEEeC-----CEEE---Eec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG-----IAIL---TAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~-----~~~l---~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||.+..++.+.|+|.     .+.|   ... ...   ....+||++.     +...|+|++++++|++.|+|....
T Consensus        23 ~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~~  100 (119)
T d1qnzh_          23 KASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIHY  100 (119)
T ss_dssp             EEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEEEEEECS
T ss_pred             EEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEEEEEEec
Confidence            36888888888999982     2222   211 111   1245799886     336799999999999999997653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.27  E-value=2e-06  Score=49.80  Aligned_cols=60  Identities=27%  Similarity=0.374  Sum_probs=42.0

Q ss_pred             EeccCCCCcEEEEEeC----C-EEE---Ee------cccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEe
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AIL---TA------GSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQI   61 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~l---~~------~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~   61 (78)
                      +||.+..++.+.|+|.    . .-|   ..      +...   ....+||++.     +...|+|.+++.+|++.|+|..
T Consensus        24 ~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr  103 (127)
T d1i3ua_          24 ASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAA  103 (127)
T ss_dssp             EESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecccccceeEEEEEE
Confidence            6888888899999982    1 222   11      1111   1234699986     3467999999999999999986


Q ss_pred             ec
Q psy14103         62 GT   63 (78)
Q Consensus        62 ~~   63 (78)
                      ..
T Consensus       104 ~~  105 (127)
T d1i3ua_         104 KT  105 (127)
T ss_dssp             ES
T ss_pred             Ee
Confidence            53

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.27  E-value=3.3e-06  Score=47.29  Aligned_cols=24  Identities=17%  Similarity=0.513  Sum_probs=21.4

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+|+|.+++.+|+|.|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          71 SSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEecccccccccceecccccC
Confidence            457899999999999999998764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=1.9e-06  Score=49.25  Aligned_cols=59  Identities=22%  Similarity=0.485  Sum_probs=41.7

Q ss_pred             EeccCCCCcEEEEEe---CCEE-----EEecc-cc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKR---GIAI-----LTAGS-TK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k---~~~~-----l~~~~-~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|.|   +..+     +..++ .. +  ...+||++.     +...|+|++++.+|++.|+|.-.
T Consensus        24 ~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr~   99 (117)
T d1mfah1          24 ASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRG   99 (117)
T ss_dssp             EESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEEEEecc
Confidence            688888889999998   2211     22221 11 1  235699886     23679999999999999999754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.26  E-value=2.4e-06  Score=47.69  Aligned_cols=51  Identities=18%  Similarity=0.341  Sum_probs=33.8

Q ss_pred             EEEEEe-----CCEEEEec-cc-ccCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         13 VLAWKR-----GIAILTAG-ST-KVTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        13 ~v~W~k-----~~~~l~~~-~~-~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+.|+|     ..+.|... .. ......|+.+.   ....|.|.+++.+|+|.|.|.+..
T Consensus        30 ~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          30 YIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             CEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             cEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            489998     22333222 11 12234566665   456899999999999999998753

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.26  E-value=1.9e-06  Score=49.64  Aligned_cols=60  Identities=23%  Similarity=0.402  Sum_probs=42.8

Q ss_pred             EeccCCCCcEEEEEeC----CE-E---EEecc-c-c--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----IA-I---LTAGS-T-K--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~-~---l~~~~-~-~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.    .. -   |..+. . .  ....+||++.     +...|+|.+++.+|++.|+|....
T Consensus        25 ~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          25 ASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             ECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             EcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEEEEeecC
Confidence            6888888899999982    21 1   22221 1 1  1245899987     235799999999999999998653

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.26  E-value=9.2e-07  Score=49.93  Aligned_cols=59  Identities=19%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEec-ccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAG-STK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~-~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..+..+.|+|+    + +-   |..+ ...  ....+||++.     +...|+|.+++.+|++.|+|...
T Consensus        17 ~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          17 ASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             CCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEEC
T ss_pred             ECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeeeEecc
Confidence            5777777888999982    1 22   2211 111  1345799987     33679999999999999999754

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.25  E-value=2.6e-06  Score=48.89  Aligned_cols=60  Identities=20%  Similarity=0.336  Sum_probs=42.3

Q ss_pred             EeccCCCCcEEEEEeC---CEE-----EEe-ccc--c---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG---IAI-----LTA-GST--K---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~~~-----l~~-~~~--~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||++...+.+.|+|.   ..+     +.. ++.  +   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          24 TSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             EESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEB
T ss_pred             ECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCceEEEeeEec
Confidence            7899999999999982   211     111 111  1   1234799987     236899999999999999998653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.25  E-value=4.4e-07  Score=51.91  Aligned_cols=60  Identities=20%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EE-ecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LT-AGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~-~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|.|.    +..    |. .+... +  .-.+||++.     +...|+|++++.+|++.|+|.-.
T Consensus        23 ~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          23 KASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEEEEccc
Confidence            36899998899999982    221    22 22221 1  234799986     33689999999999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=1.4e-06  Score=49.89  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             eEeccCCCCcEEEEEeC----CE-E---EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA-I---LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~-~---l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|.|.    +. -   |. .+..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr~   99 (118)
T d1nlbh1          23 KASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFCARF   99 (118)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEEEEeee
Confidence            36888888889999982    11 1   22 11111   1235799987     33679999999999999999643

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.24  E-value=3.4e-06  Score=48.31  Aligned_cols=61  Identities=20%  Similarity=0.416  Sum_probs=41.9

Q ss_pred             eEeccCCC-CcEEEEEe---CCEE-----EEecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDK-NYVLAWKR---GIAI-----LTAGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~-~~~v~W~k---~~~~-----l~~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||++.. ++.+.|.|   +..+     +..+...   ....+||++.     +...|+|.+++.+|++.|+|....
T Consensus        23 ~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          23 TVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCAGLL  100 (119)
T ss_dssp             EEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEEEEeEec
Confidence            36888884 58899998   2211     2222121   1245799987     236799999999999999997553

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.24  E-value=3.4e-06  Score=47.54  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=26.8

Q ss_pred             CCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         32 PDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        32 ~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...||.+.    ...+|+|.+++++|+|.|.|.+..
T Consensus        63 ~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          63 VKDKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             CTTTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccccceeeccccccccccccccccccCceEEEEEec
Confidence            56789876    236899999999999999999864

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.23  E-value=3.3e-06  Score=48.45  Aligned_cols=59  Identities=19%  Similarity=0.349  Sum_probs=39.9

Q ss_pred             EeccCC--CCcEEEEEeC----CEE----EEecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPD--KNYVLAWKRG----IAI----LTAGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~--~~~~v~W~k~----~~~----l~~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++.  .++.+.|+|.    ...    +..+... .  ...+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          24 VSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             EESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeEEEEEec
Confidence            577765  5678999982    211    2222111 1  134799987     23679999999999999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.23  E-value=4.6e-06  Score=48.07  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=43.6

Q ss_pred             eEeccCCCCcEEEEEeC----C-EE---EEe-cccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----I-AI---LTA-GSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~-~~---l~~-~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||++..++.+.|.|.    + .-   |.. +... +  .-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        22 ~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          22 AASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             EEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEEEEeec
Confidence            37899999999999982    1 11   222 2221 1  245899987     33689999999999999999865

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=3e-06  Score=47.17  Aligned_cols=54  Identities=20%  Similarity=0.370  Sum_probs=37.0

Q ss_pred             CcEEEEEe---C--CEEE-Eeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         11 NYVLAWKR---G--IAIL-TAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        11 ~~~v~W~k---~--~~~l-~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...+.|+|   +  .+.| ..... .....+||...     ...+|.|.+++++|+|.|.|.+...
T Consensus        29 ~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          29 YPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             CCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             CcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            35699998   2  3333 32222 12346788765     3588999999999999999987643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=3.7e-06  Score=46.87  Aligned_cols=54  Identities=17%  Similarity=0.245  Sum_probs=36.2

Q ss_pred             CCcEEEEEe---CC---EEEEec-cc---ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR---GI---AILTAG-ST---KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k---~~---~~l~~~-~~---~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|   +.   .++... ..   ......||...    .+.+|+|.+++++|+|.|.|.+..
T Consensus        26 ~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          26 GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            456899998   22   222211 11   12355677654    357999999999999999998763

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.21  E-value=3e-06  Score=48.69  Aligned_cols=59  Identities=22%  Similarity=0.386  Sum_probs=42.4

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEec-ccc---cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAG-STK---VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~-~~~---~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|.|.    + .-   +..+ ...   ..-.+||++..     ...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          24 ASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             EcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEEeeecc
Confidence            6889999999999982    1 21   2222 111   12357999973     3679999999999999999865

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.20  E-value=2.1e-06  Score=49.70  Aligned_cols=60  Identities=22%  Similarity=0.459  Sum_probs=41.5

Q ss_pred             EeccCCCCcEEEEEeC----C-E---EEEec-ccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----I-A---ILTAG-STK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~---~l~~~-~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..+..+.|+|.    + .   .|..+ ... .  ...+||++.     +...|+|++++.+|++.|+|....
T Consensus        23 ~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          23 TSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             CC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECC
T ss_pred             ECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCceeEEEeec
Confidence            6788888899999982    2 1   12222 221 1  245799887     235699999999999999998653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.20  E-value=3.5e-06  Score=48.22  Aligned_cols=61  Identities=25%  Similarity=0.411  Sum_probs=43.3

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EEecccc---cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LTAGSTK---VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~~~~~~---~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||++..++.+.|.|.    +..    |..+..+   ....+||++..     ...|+|.+++.+|++.|+|.-..
T Consensus        23 ~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~~   99 (118)
T d1lo4h1          23 EASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYYCARGT   99 (118)
T ss_dssp             EEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEEecccC
Confidence            37899999999999982    211    2222121   13457999872     35799999999999999998553

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.20  E-value=1.9e-06  Score=49.42  Aligned_cols=59  Identities=17%  Similarity=0.326  Sum_probs=42.0

Q ss_pred             EeccCCCCcEEEEEeC----CE----EEEecc-cc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----IA----ILTAGS-TK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~----~l~~~~-~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|+|.    +.    .|..++ .. +  .-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          24 ASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             EESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEEEEEEe
Confidence            7899888899999982    21    122111 11 1  235799987     23679999999999999999754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.20  E-value=5.6e-06  Score=48.32  Aligned_cols=60  Identities=22%  Similarity=0.395  Sum_probs=43.4

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEe-cccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTA-GSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~-~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.    + .-   |.. +...   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          24 ASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             EESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             EcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceeeEEEEec
Confidence            6899998899999982    1 21   222 2111   1346899987     236899999999999999998664

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.20  E-value=2.9e-06  Score=48.66  Aligned_cols=60  Identities=20%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             eEeccCCCCcEEEEEeC----CE----EEEec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA----ILTAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~----~l~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||.+..++.+.|.|.    +.    .|..+ ...   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          23 KASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            47899998899999982    22    12222 111   1345899987     34789999999999999999864

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.19  E-value=2.5e-06  Score=48.25  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=42.4

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EEec-c--c---ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LTAG-S--T---KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~~~-~--~---~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+||++..+..+.|.|.    ...    |..+ .  .   ...-.+||++.     +...|+|++++.+|++.|+|.-..
T Consensus        23 ~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          23 AASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRGR  102 (109)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCEEEEEEEcC
Confidence            36888888899999982    211    2211 1  1   11235799987     236799999999999999998543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.19  E-value=2e-06  Score=49.61  Aligned_cols=60  Identities=23%  Similarity=0.439  Sum_probs=42.5

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEe-cccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTA-GSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~-~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||++..++.+.|+|.    . .-   |.. +...   ....+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          24 ASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccceeEEecC
Confidence            6888888889999982    1 11   222 2221   1245799987     235799999999999999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=3.5e-06  Score=48.40  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             EeccCCCCcEEEEEeC----C-EEE---Eecc-cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AIL---TAGS-TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~l---~~~~-~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++..++.+.|+|.    . .-+   ..++ .+   ....+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          24 ASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             EESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEEEeEee
Confidence            6788888889999982    1 222   2111 11   1235699986     23679999999999999999854

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=6.5e-06  Score=45.96  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=35.6

Q ss_pred             CcEEEEEe-----CC-EEEEecccc-cCCCCCEEEE---cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR-----GI-AILTAGSTK-VTPDKRIQLV---DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k-----~~-~~l~~~~~~-~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|     .. .++...... .....++...   ...+|+|.+++++|+|.|.|....
T Consensus        30 ~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          30 SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             CCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            34689997     12 333322221 2345677665   447999999999999999998664

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=1.5e-06  Score=48.98  Aligned_cols=53  Identities=30%  Similarity=0.429  Sum_probs=35.0

Q ss_pred             CcEEEEEe---C--CE-EEEeccc-ccCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKR---G--IA-ILTAGST-KVTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k---~--~~-~l~~~~~-~~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|+|   +  .. ++..... .....+|+.+.     ...+|+|.+++.+|+|.|+|.+..
T Consensus        28 ~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          28 FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccC
Confidence            34689998   1  22 2332221 12234566543     568999999999999999998763

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.18  E-value=1.6e-06  Score=50.30  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             eEeccCCCCcEEEEEeC----C-EE---EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRG----I-AI---LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~-~~---l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      -+||++..++.+.|.|.    + .-   |. .+..+   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        23 ~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          23 KASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             EEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEEEEeEEe
Confidence            37899999999999982    1 11   22 22221   2346899987     336799999999999999998653

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.18  E-value=1.2e-06  Score=50.44  Aligned_cols=60  Identities=20%  Similarity=0.401  Sum_probs=42.2

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EE-eccc--c---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LT-AGST--K---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~-~~~~--~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.    + .-   |. .++.  .   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          24 TSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             EcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcceEEEEEecC
Confidence            6888888889999982    1 21   21 1111  1   1235799987     236799999999999999998653

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.18  E-value=2.4e-06  Score=49.34  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=41.6

Q ss_pred             EeccCCCCcEEEEEeC---CEE-----EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG---IAI-----LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~---~~~-----l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|+|.   ..+     |. .+...   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          24 ASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             EESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            6888888889999982   211     22 11111   1245799886     33679999999999999999855

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.17  E-value=1.2e-06  Score=50.48  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=42.1

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEec-ccc---cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAG-STK---VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~-~~~---~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||++..++.+.|+|.    + +-   |..+ ...   ....+||++..     ...|+|++++.+|++.|+|....
T Consensus        24 ~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          24 ASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREP  100 (121)
T ss_dssp             EESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             EcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEEEEEEec
Confidence            6888888889999982    2 21   2212 111   13457999872     35799999999999999997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=4e-06  Score=48.53  Aligned_cols=60  Identities=22%  Similarity=0.310  Sum_probs=43.3

Q ss_pred             eEeccCCCCcEEEEEeC----CE--E--EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA--I--LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~--~--l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||++..++.+.|.|.    +.  +  |. .+...   ..-.+||++.     +...|+|.+++.+|++.|+|.-.
T Consensus        23 ~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          23 KASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             EEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEEEEeec
Confidence            47899999999999982    21  1  22 22221   1245899987     33689999999999999999865

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.16  E-value=5.6e-06  Score=47.80  Aligned_cols=59  Identities=22%  Similarity=0.430  Sum_probs=38.8

Q ss_pred             EeccCCC--CcEEEEEeC-----CE-EEE--ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDK--NYVLAWKRG-----IA-ILT--AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~--~~~v~W~k~-----~~-~l~--~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||++..  .+.+.|+|.     .. +..  .+..+   ....+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          24 FSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            5676554  467899872     22 222  21111   1235799986     23679999999999999999854

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.6e-06  Score=45.84  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             EEEEEe--C-CEEEEecc--cccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc-C--CceEEEEEEEE
Q psy14103         13 VLAWKR--G-IAILTAGS--TKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL-E--PKEITHTLEIL   76 (78)
Q Consensus        13 ~v~W~k--~-~~~l~~~~--~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-~--~~~~~~~L~V~   76 (78)
                      .|.|.|  + ..+..+..  ....+.+.|.++.+++|+|.++..+|+|.|.-.+.+. +  ..+.+..|.|+
T Consensus        29 dIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          29 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             eeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            789998  3 34444433  3456777899999999999999999999999999965 3  44567777664

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.15  E-value=3.4e-06  Score=48.25  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=42.8

Q ss_pred             EeccCCCCcEEEEEeC----CE--E--EE-ecccc---cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----IA--I--LT-AGSTK---VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~--~--l~-~~~~~---~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|.|.    +.  +  |. .+...   ..-.+||++..     ...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          24 ASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEEEeeEec
Confidence            6888888899999982    11  1  22 22221   13468999872     36799999999999999998654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.14  E-value=4.9e-06  Score=47.83  Aligned_cols=60  Identities=27%  Similarity=0.445  Sum_probs=42.9

Q ss_pred             EeccCCCCcEEEEEeC----CE-E---EEecc-cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----IA-I---LTAGS-TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~-~---l~~~~-~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..++.+.|+|.    +. -   |..+. ..   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          24 ASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             EESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEEEeecCC
Confidence            6898888899999982    21 1   22221 11   1245899987     336899999999999999998653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.13  E-value=2.6e-06  Score=49.16  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=42.3

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EEec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LTAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|+|.    +..    |..+ ..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          23 QTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDTALYYCARL   99 (124)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccceEEEEeec
Confidence            37898888889999982    211    2222 111   1245899987     23689999999999999999644

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=5.3e-06  Score=46.47  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.6

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          73 SRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEhhcCccccCEeEEEEEec
Confidence            457999999999999999999874

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.13  E-value=5e-06  Score=48.43  Aligned_cols=60  Identities=17%  Similarity=0.248  Sum_probs=43.1

Q ss_pred             eEeccCCCCcEEEEEeC----CEE----EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IAI----LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~~----l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||++..++.+.|.|.    +..    |. .+..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        22 ~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          22 QASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             EESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCCEEEEeeec
Confidence            37899999999999982    211    22 22221   1245899987     34679999999999999999765

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.12  E-value=4.9e-06  Score=47.89  Aligned_cols=59  Identities=17%  Similarity=0.340  Sum_probs=38.6

Q ss_pred             EeccCC--CCcEEEEEeC-----CEE---EEeccc-cc--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPD--KNYVLAWKRG-----IAI---LTAGST-KV--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~--~~~~v~W~k~-----~~~---l~~~~~-~~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+.  ..+.+.|+|.     ..-   +..+.. ..  .-.+||++.     +...|+|++++++|++.|+|...
T Consensus        24 ~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          24 FSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceEEeeccc
Confidence            566654  3468899971     122   222211 11  234799886     23679999999999999999855

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.1e-06  Score=47.55  Aligned_cols=25  Identities=32%  Similarity=0.667  Sum_probs=21.9

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +..+|.|++++.+|+|.|.|.+...
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          73 NQVNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CEEEEEeeccccCCCEEEEEeEecc
Confidence            4578999999999999999988743

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=3.7e-06  Score=47.03  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+|.|.+++++|+|.|.|.+..
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~   92 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEA   92 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceeEEEECCCCHhHCEEEEEEecC
Confidence            346899999999999999999764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.12  E-value=2.1e-06  Score=48.01  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|+...     ...+|+|.+++.+|+|.|.|.+...
T Consensus        64 ~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          64 DKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             TTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEeCCCCeEEEeecccCCCCCcEEEEeEcCC
Confidence            45677654     4578999999999999999998743

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.12  E-value=1.2e-05  Score=46.75  Aligned_cols=60  Identities=18%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             EeccCCCC--cEEEEEeC-----CE-EEEec--ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKN--YVLAWKRG-----IA-ILTAG--STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~--~~v~W~k~-----~~-~l~~~--~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||.+..+  ..+.|+|.     .+ +....  ...   ....+||++.     +...|+|.+++++|++.|+|....
T Consensus        24 ~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          24 FSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceEEEEEEec
Confidence            56776544  47999982     22 22211  111   1235899986     236799999999999999998653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.12  E-value=3.8e-06  Score=48.51  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=42.8

Q ss_pred             EeccCCCCcEEEEEeC----CEE----EE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          4 LSGLPDKNYVLAWKRG----IAI----LT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~~----l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +||++..++.+.|.|.    +..    |. .+...   ..-.+||++.     +...|+|.+++.+|++.|+|....
T Consensus        24 ~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          24 VSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeEeEeecc
Confidence            6888888889999982    221    22 22211   1345799987     336899999999999999998653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.11  E-value=3.6e-06  Score=48.71  Aligned_cols=59  Identities=20%  Similarity=0.398  Sum_probs=42.0

Q ss_pred             eEeccCCCCcEEEEEeC----CE----EEE-ecccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEe
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA----ILT-AGSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQI   61 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~----~l~-~~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~   61 (78)
                      -+||++..++.+.|+|.    +.    .|. .+..+   ..-.+||++.     +...|+|.+++.+|++.|+|.-
T Consensus        23 ~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          23 QASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             EEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence            37898888899999982    21    122 12111   1245799987     2367999999999999999974

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.11  E-value=7.1e-06  Score=45.54  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCcEEEEEe---CC---EEEEec--cc--ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKR---GI---AILTAG--ST--KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k---~~---~~l~~~--~~--~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|   +.   .++...  ..  ......||...    ...+|+|.+++++|+|.|.|....
T Consensus        28 ~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          28 NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            446799998   21   233221  11  11223455443    568999999999999999998764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.10  E-value=9.8e-06  Score=45.16  Aligned_cols=55  Identities=15%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             CCcEEEEEeC-----CEEE-Eeccc----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGST----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      +...+.|+|.     .+.+ .....    .....+|+...    ...+|.|.+++++|+|.|.|.....
T Consensus        26 ~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          26 NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESS
T ss_pred             CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEeeccC
Confidence            4568999981     1223 22111    11234555544    3568999999999999999987643

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=5.9e-06  Score=47.96  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=42.2

Q ss_pred             eEeccCCCCcEEEEEeC----CE--E--EEec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA--I--LTAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~--~--l~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||.+..++.+.|+|.    +.  +  |..+ ..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        22 ~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          22 KASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             EETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            36888888899999982    21  1  2212 121   1235799987     23679999999999999999864

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.08  E-value=5.4e-06  Score=47.78  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEecc-cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAGS-TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~~-~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|.|.    + .-   |..+. .+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          24 TSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEC
T ss_pred             EcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEEEeccc
Confidence            6888888899999982    2 11   33221 21   1245899987     33679999999999999999854

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.08  E-value=3.9e-06  Score=48.51  Aligned_cols=59  Identities=24%  Similarity=0.416  Sum_probs=42.3

Q ss_pred             EeccCCCCcEEEEEeC----CEE----EE-ecccc---cCCCCCEEEEc-----CeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----IAI----LT-AGSTK---VTPDKRIQLVD-----GYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~~----l~-~~~~~---~~~~~R~~~~~-----~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|+|.    +..    |. .+...   ..-.+||++..     ...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          24 ASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKG   99 (126)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEEEEEec
Confidence            6888888899999982    211    22 22211   23468999872     3689999999999999999754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=2.6e-06  Score=48.66  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=41.1

Q ss_pred             EeccCCCCcEEEEEe----CC-EE---EEecccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKR----GI-AI---LTAGSTK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k----~~-~~---l~~~~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|+|    +. .-   |..+..+ +  .-.+||++.     +...|+|++++.+|++.|+|...
T Consensus        24 ~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          24 VSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             CCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEEEEEE
T ss_pred             EeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEEEEee
Confidence            688888889999998    12 21   2222111 1  124789876     33579999999999999999754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.06  E-value=5.1e-06  Score=48.25  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEec-ccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAG-STK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~-~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|.|.    + .-   |..+ ..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          24 ASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             CCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            5778888889999982    1 11   2222 211   1245799987     33679999999999999999854

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.04  E-value=6.3e-06  Score=47.66  Aligned_cols=59  Identities=25%  Similarity=0.398  Sum_probs=42.2

Q ss_pred             EeccCCCCcEEEEEeC----CEE----EEe-cccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----IAI----LTA-GSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~~----l~~-~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..+..+.|.|.    +..    |.. +..+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        24 ~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          24 SSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARD   99 (127)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEEEEEEe
Confidence            6888888899999982    211    221 2111   1235899987     33689999999999999999854

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=6e-06  Score=46.16  Aligned_cols=54  Identities=13%  Similarity=0.242  Sum_probs=36.0

Q ss_pred             CCcEEEEEeC-----CEEE-Eeccc--c--cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         10 KNYVLAWKRG-----IAIL-TAGST--K--VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        10 ~~~~v~W~k~-----~~~l-~~~~~--~--~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +...+.|+|.     .+.| ...+.  .  .....||...    ...+|+|.+++++|+|.|.|.+..
T Consensus        28 ~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          28 GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred             CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEeec
Confidence            4467999982     2333 22211  1  1245688654    357899999999999999998763

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.1e-05  Score=44.74  Aligned_cols=56  Identities=9%  Similarity=0.244  Sum_probs=35.8

Q ss_pred             CCCCcEEEEEe-----CCEEEE-eccc----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          8 PDKNYVLAWKR-----GIAILT-AGST----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         8 ~~~~~~v~W~k-----~~~~l~-~~~~----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      +.+...+.|+|     ....|. ....    ......++...    ...+|.|.+++++|+|.|.|.+..
T Consensus        23 ~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          23 TMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASSE   92 (112)
T ss_dssp             TTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEEEC
T ss_pred             eCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEEec
Confidence            34556899998     123332 2211    11233455443    457899999999999999998763

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.03  E-value=2.5e-06  Score=49.03  Aligned_cols=60  Identities=18%  Similarity=0.322  Sum_probs=41.9

Q ss_pred             eEeccCCCCcEEEEEeC----CE-E---EEe-cc--cc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDKNYVLAWKRG----IA-I---LTA-GS--TK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~----~~-~---l~~-~~--~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      -+||++..++.+.|.|.    +. -   |.. .+  .+   ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          23 AASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             EEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCCCcceEEEEecc
Confidence            36889988899999982    21 1   111 11  11   1345799887     34569999999999999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.02  E-value=8.8e-06  Score=47.03  Aligned_cols=60  Identities=20%  Similarity=0.526  Sum_probs=40.8

Q ss_pred             eEeccCCC-CcEEEEEe---CCEE-----EEe-cccc--cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          3 YLSGLPDK-NYVLAWKR---GIAI-----LTA-GSTK--VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         3 ~~~~~~~~-~~~v~W~k---~~~~-----l~~-~~~~--~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+||.+.. .+.+.|+|   +..+     +.. +...  ..-.+||++.     +...|+|.+++.+|++.|+|...
T Consensus        23 ~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          23 SVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             EEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEEEeeee
Confidence            36888774 47899998   2222     222 2211  1245799876     33689999999999999999854

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=1.3e-05  Score=44.56  Aligned_cols=55  Identities=15%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             CCCcEEEEEe---CC--EEE-Eeccc----ccCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEeec
Q psy14103          9 DKNYVLAWKR---GI--AIL-TAGST----KVTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus         9 ~~~~~v~W~k---~~--~~l-~~~~~----~~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      .+...+.|+|   +.  +.| .....    ......|+...    ...+|.|.+++.+|+|.|.|.+..
T Consensus        26 ~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          26 MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            3456789998   22  333 22111    11233556554    347899999999999999999874

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.01  E-value=7.3e-06  Score=47.61  Aligned_cols=59  Identities=25%  Similarity=0.437  Sum_probs=42.1

Q ss_pred             EeccCCCCcEEEEEeC----CE-EE---Ee---cccc---cCCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----IA-IL---TA---GSTK---VTPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~~-~l---~~---~~~~---~~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+..++.+.|+|.    .. -+   ..   +..+   ..-.+||++.     +...|+|.+++++|++.|+|...
T Consensus        24 ~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          24 ASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccCCceEEEEecc
Confidence            6888888889999982    21 12   11   1111   1346899987     33679999999999999999865

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=1.2e-05  Score=44.70  Aligned_cols=54  Identities=13%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             CCCcEEEEEe---CC--EEE-E-eccc-c--cCCCCCEEEE----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          9 DKNYVLAWKR---GI--AIL-T-AGST-K--VTPDKRIQLV----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         9 ~~~~~v~W~k---~~--~~l-~-~~~~-~--~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      .+...+.|+|   +.  +.| . .+.. .  .....|+...    .+.+|.|.+++++|+|.|.|...
T Consensus        25 ~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          25 MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEeec
Confidence            3456899998   22  222 1 1111 1  1233455443    34789999999999999999875

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.90  E-value=3.4e-06  Score=48.18  Aligned_cols=59  Identities=19%  Similarity=0.312  Sum_probs=40.4

Q ss_pred             EeccCCCCcEEEEEeC----C-EE---EEec-ccc-c--CCCCCEEEE-----cCeEEEEccCCCCCCEEEEEEee
Q psy14103          4 LSGLPDKNYVLAWKRG----I-AI---LTAG-STK-V--TPDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~----~-~~---l~~~-~~~-~--~~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      +||.+...+.+.|.|.    + .-   |..+ ..+ +  .-.+||++.     +...|+|.+++.+|++.|+|.-.
T Consensus        24 ~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr~   99 (117)
T d1b2wh1          24 ASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVYYCARG   99 (117)
T ss_dssp             CCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGGCEEEECCEE
T ss_pred             ECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCcceEEEEccc
Confidence            5777778889999982    1 22   2111 111 1  123799988     23689999999999999999754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.5e-05  Score=42.98  Aligned_cols=33  Identities=12%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             CCCCEEEE-----cCeEEEEccCCCCCCEEEEEEeecc
Q psy14103         32 PDKRIQLV-----DGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        32 ~~~R~~~~-----~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ...|+.+.     +..+|.|.+++.+|+|.|.|.+...
T Consensus        62 ~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          62 SKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             CSSSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             cCCcEEEEEECCCCeEEEEECCCCcccCeEEEEEEecc
Confidence            34566543     3468999999999999999998753

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.2e-05  Score=40.86  Aligned_cols=61  Identities=18%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|..+.+..|.|++++..+..+...    ...++.|++..  .|.|..-+-.....|+|.|...+
T Consensus        28 ~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S--~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          28 TITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASS--YLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEE--EEEEEHHHHTTCCEEEEEEEETT
T ss_pred             EEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEE--EEEECHHHhCCCCEEEEEEEECC
Confidence            367887888999999988776543221    23567787763  66676555455778999999754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.00019  Score=38.99  Aligned_cols=58  Identities=9%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|+-+++..|+|++++..+.....   ....++.|++..  .|.+   ..++.+.|+|.+....
T Consensus        26 ~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s--~l~v---~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          26 YVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILA--HTEF---TPTETDTYACRVKHDS   86 (99)
T ss_dssp             EEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEE--EEEE---CCCSSCCEEEEEECTT
T ss_pred             EEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEE--EeEe---cCcCCCEEEEEEEeCC
Confidence            36787788899999998877643322   123556665542  4444   3566778999999653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=9e-05  Score=40.22  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc-----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK-----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~-----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|+||+..+..+...     ...+.-|++.  -.|.|   ..+|...|+|++...+
T Consensus        23 ~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~--s~l~v---~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          23 RALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGW--ITLAV---PPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEE--EEEEE---CTTCGGGEEEEEECTT
T ss_pred             EEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEE--EEEEE---CCCCCCEEEEEEEeCC
Confidence            467877788999999999887544221     1223334332  23444   4466778999999753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00043  Score=37.22  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             eEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      ..+.|.+|..+|+|.|.|...+..   ..+....|.|
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             EEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEE
Confidence            579999999999999999987642   3455666665

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.57  E-value=0.0002  Score=39.26  Aligned_cols=58  Identities=14%  Similarity=0.301  Sum_probs=39.6

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-++...|+|++|+..+..+...    ...++.|++..  .|.+..   ++...|+|+|...+
T Consensus        27 ~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S--~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          27 FIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFH--YLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             EEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEE--EEEECC---CTTCCEEEEEECTT
T ss_pred             EEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEE--EeEEcC---CCCCEEEEEEEECC
Confidence            467887888999999998887654221    23456676653  566543   44568999999753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0005  Score=37.47  Aligned_cols=58  Identities=14%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|+|++..+.....   ....|+-|++..  .|.+   ..+|.+.|+|++...+
T Consensus        27 ~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s--~l~v---~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          27 YVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLY--YTEF---TPTEKDEYACRVNHVT   87 (100)
T ss_dssp             EEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEE--EEEE---CCCSSCCEEEEEECTT
T ss_pred             EECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEE--EeEE---CCCCCCEEEEEEEeCC
Confidence            46788788899999998877642211   223555565432  3444   4567789999999754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.56  E-value=0.00018  Score=39.44  Aligned_cols=58  Identities=16%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+++..|+|+|++..+..+..    ....|+-|++..  .|.+.   .+|.+.|+|+|...+
T Consensus        25 ~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s--~l~v~---~~~~~~ytC~V~H~s   86 (100)
T d1muja1          25 FVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLS--YLTFI---PSDDDIYDCKVEHWG   86 (100)
T ss_dssp             EEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEE--EEEEC---CCTTCCEEEEEECTT
T ss_pred             EEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEE--EeEEc---CCCCCEEEEEEEECC
Confidence            46788788899999998766654422    123455676553  45554   456778999999753

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.48  E-value=0.00078  Score=36.58  Aligned_cols=58  Identities=12%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+++..|+|++++..+..+..    ....|+-|++.  ..|.+.   .+|...|+|+|...+
T Consensus        27 ~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~--s~l~v~---~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          27 LVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKI--SYLTFL---PSADEIYDCKVEHWG   88 (99)
T ss_dssp             EEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEE--EEEEEC---CCTTCCEEEEEECTT
T ss_pred             EEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEE--EEEEEc---CCCCCEEEEEEEeCC
Confidence            46778788899999999887764422    12345566554  245554   355668999999653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.47  E-value=0.00059  Score=37.09  Aligned_cols=58  Identities=16%  Similarity=0.390  Sum_probs=39.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|++++..+..+...    ...|+-|++..  .|.|   ..++...|+|+|...+
T Consensus        25 ~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s--~L~v---~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          25 YVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLS--HLAL---TPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEE--EEEE---CCCTTCCEEEEEECTT
T ss_pred             EEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEE--EeEc---CCCCCCEEEEEEEeCC
Confidence            467888888999999999887654321    13456666542  3555   3455668999999754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=9.8e-05  Score=40.58  Aligned_cols=59  Identities=10%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc-----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK-----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~-----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|..+.+..|.|++++..+..+...     ...++.|++..  .|.|..-+-.....|+|.+...
T Consensus        28 v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S--~L~v~~~~W~~g~~ytC~V~H~   91 (105)
T d1fp5a2          28 IQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFS--RLEVTRAEWEQKDEFICRAVHE   91 (105)
T ss_dssp             EEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEE--EEEECHHHHTTGGGEEEEEECT
T ss_pred             EEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEE--EEEECHHHcCCCCEEEEEEEEC
Confidence            56777778999999988876544321     13556776653  6777655545567899999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.41  E-value=0.00039  Score=37.05  Aligned_cols=55  Identities=11%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc-cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK-VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~-~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-+++..|.|++++..+...... ...++.|+...  .+   .+...|  .|+|+|...+
T Consensus        22 ~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s--~~---~~~~~~--~yTC~V~H~~   77 (86)
T d1hxma2          22 VKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVK--LG---KYEDSN--SVTCSVQHDN   77 (86)
T ss_dssp             EESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEE--EE---EETTTT--TCEEEEEETT
T ss_pred             EeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEE--EE---ecCCCC--EEEEEEEECC
Confidence            67888899999999988777554332 35677886643  22   334444  6999999743

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=8.4e-05  Score=40.03  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc--cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK--VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~--~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|++++..+..+...  ...++.|++..  .|.|.   .+|...|+|+|...+
T Consensus        23 ~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S--~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          23 AAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWS--LLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEE--EEEEE---TTCGGGEEEEEECTT
T ss_pred             EEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEE--EEEEC---CCCCCEEEEEEEeCC
Confidence            367777788999999988776544322  24566676653  45554   356678999999653

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.38  E-value=6.2e-05  Score=41.29  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|.|++++..+..+...   ...++.|++..  .|.|..-+-.+...|+|+|...+
T Consensus        29 ~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S--~l~v~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          29 VNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSS--YLSLTADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEE--BCCEEHHHHHTCSCEEEEEECTT
T ss_pred             EEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEE--EEEEcHHHcCCCCEEEEEEEECC
Confidence            67777788999999998877654332   23566776653  45555444455668999999653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00044  Score=37.76  Aligned_cols=69  Identities=7%  Similarity=0.075  Sum_probs=41.5

Q ss_pred             ccCCCCcEEEEEeCCEEEEeccc--ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC---C-----ceEEEEEEE
Q psy14103          6 GLPDKNYVLAWKRGIAILTAGST--KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE---P-----KEITHTLEI   75 (78)
Q Consensus         6 ~~~~~~~~v~W~k~~~~l~~~~~--~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~-----~~~~~~L~V   75 (78)
                      |.|...+.|.|++++..+.....  .....+.+...  ..|++.-....|...|+|+|.+..   .     ++....|+|
T Consensus        28 ~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~--s~l~~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V  105 (109)
T d1vcaa1          28 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS--LEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQV  105 (109)
T ss_dssp             EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEE--EEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCE
T ss_pred             cCCCCceEEEEeccCceeeccccccccccCCcceee--EEEEccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEE
Confidence            45555678999998887754322  12234445443  367776555555558999999541   1     344555776


Q ss_pred             E
Q psy14103         76 L   76 (78)
Q Consensus        76 ~   76 (78)
                      .
T Consensus       106 ~  106 (109)
T d1vcaa1         106 Y  106 (109)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00036  Score=38.24  Aligned_cols=60  Identities=18%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc-----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST-----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~-----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-+.+..|+|++++..+..+..     ....++.|++..  .|.|..-+-.....|+|.|...+
T Consensus        29 ~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S--~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          29 LNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS--TLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             EEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEE--EEEEEHHHHHTCCEEEEEEECTT
T ss_pred             EEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEE--EEEECHHHhCCCCEEEEEEEECC
Confidence            5677778899999998877654321     113567787764  56665544333568999999643

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.30  E-value=0.00018  Score=40.67  Aligned_cols=59  Identities=17%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc---------cCCCCCEEEEcCeEEEEccCCCCCCE-EEEEEeec
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK---------VTPDKRIQLVDGYNLQITDLQTTDAG-SYQCQIGT   63 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~---------~~~~~R~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~   63 (78)
                      .++|..+.+..|+|++++..+..+...         ...++.|++..  .|.|..-+-.|.| .|+|.|..
T Consensus        28 ~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS--~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          28 LATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSS--RLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             EEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEE--EEEEEHHHHTCTTCEEEEEEEE
T ss_pred             EEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEE--EEEECHHHhCCCCCEEEEEEEE
Confidence            367777788999999988877543211         12467787653  6777655545655 69999975

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00015  Score=39.28  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             CeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG   77 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g   77 (78)
                      ...+.|.+|..+|+|.|.|.....+    ..+....|.|.|
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~VtG   96 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTG   96 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEEC
T ss_pred             EEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEEeC
Confidence            4589999999999999999976432    446667777765

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.29  E-value=0.0016  Score=35.17  Aligned_cols=58  Identities=17%  Similarity=0.211  Sum_probs=38.2

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+++..|+|++++..+..+..    ....|+-|++..  .|   .+..++...|+|.|...+
T Consensus        26 ~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s--~l---~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          26 SVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLV--ML---ETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEE--EE---ECCCCTTCEEEEEEECTT
T ss_pred             EEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEE--Ee---eEcCCCCCEEEEEEEECC
Confidence            36777778899999998877654322    123445554432  23   345678889999999753

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0014  Score=34.58  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             EEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEE
Q psy14103         13 VLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHT   72 (78)
Q Consensus        13 ~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~   72 (78)
                      --.|.|++..|....    ..+.+     -.+.|..  .+|+|.|+|...+.+.....+.
T Consensus        30 ghrW~K~gkvl~ed~----~~~~~-----tey~V~~--~D~SGeY~CVFl~~P~~~a~Ie   78 (80)
T d3b5ha2          30 GHRWLKGGVVLKEDA----LPGQK-----TEFKVDS--DDQWGEYSCVFLPEPMGTANIQ   78 (80)
T ss_dssp             EEEEESSSEEEECTT----CCCSE-----EEEEECG--GGCCEEEEEEEESTTSCEEEEE
T ss_pred             eeEEeeCCEEccccC----CCCCc-----eEEEEec--CCCCceEEEEEcCCCcceeEEE
Confidence            458999999986432    11222     3455554  7899999999876565544443

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00068  Score=37.01  Aligned_cols=60  Identities=17%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc-----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK-----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~-----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|+|++++..+..+...     ...++.|++..  .|.|..-+-.....|+|.|...+
T Consensus        29 v~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S--~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          29 LNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSS--TLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             EEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEE--EEEEEHHHHTTCCEEEEEEECTT
T ss_pred             EEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEE--EEEECHHHhCCCCEEEEEEEECC
Confidence            67777788999999988766543221     12467787653  56665544333457999999753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.6e-05  Score=40.51  Aligned_cols=60  Identities=12%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|+.+.+..|+|++++..+..+...   ...++.|++.  ..|.|..-+-.....|+|.|...+
T Consensus        30 ~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~--S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          30 VSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQ--SELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             EEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEE--EEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             EEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEE--EEEEECHHHcCCCCEEEEEEEECC
Confidence            67777788999999988777544221   1234445443  356665544344677999999754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00016  Score=39.41  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|.|++++..+..+...    ...++.|++..  .|.|..-+-.....|+|++....
T Consensus        29 v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S--~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          29 ISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASS--YLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             EEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEE--EEEECHHHHHHSSCEEEEEEETT
T ss_pred             EEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEE--EEEECHHHhCCCCEEEEEEEECC
Confidence            56777778999999988777654321    23567776653  56665544333557999999753

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.21  E-value=0.00067  Score=36.66  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+++..|.|++++..+..+...    ...++-|++..  .|.+   ..++...|+|++....
T Consensus        24 ~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s--~l~v---~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          24 SVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILV--MLEM---TPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             EEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEE--EEEC---CSCTTCCEEEEEECTT
T ss_pred             EEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEE--Eecc---CCCCCCEEEEEEEeCC
Confidence            367788888999999988766544221    13455565542  3444   4566789999999653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00014  Score=39.21  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC---CceEEEEEEE
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE---PKEITHTLEI   75 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~---~~~~~~~L~V   75 (78)
                      ....+.|.+|..+|+|.|.|...+..   ..+....|.|
T Consensus        60 ~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          60 TDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             ceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            34679999999999999999987643   2234444444

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0007  Score=36.00  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      -++|.-+.+..|+|++++..+..+...    ...++-|+..  ..|.|..   +|...|+|+|...
T Consensus        23 ~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          23 WALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKW--ASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             EEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEE--EEEEEES---STTTTCEEEEECS
T ss_pred             EEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEE--EEEEecC---cCCCEEEEEEEEC
Confidence            367888888999999998887654321    2355566554  3566653   3344799999864

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00082  Score=36.29  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCC-CCCEEEEEEeeccC
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-TDAGSYQCQIGTLE   65 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~~   65 (78)
                      ...|.|.|++..+..     ..+..-....+..|.+.+.+. +++|-|.|.+....
T Consensus        22 ~~~i~W~~n~~~~~~-----~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~   72 (91)
T d1xiwa_          22 GSEILWQHNDKNIGG-----DEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK   72 (91)
T ss_dssp             TSCEEEEETTEEESS-----SCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSC
T ss_pred             CCceeeeeccccccC-----CCcccccccccceEEecccCccccCceEEEEcCCCC
Confidence            356999998877753     122333344566888899887 89999999987543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.10  E-value=0.00094  Score=36.58  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC-CceEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE-PKEITHT   72 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~   72 (78)
                      +.|.-+.+..|.|++++..+......   ...++-|++..  .|.|.   .+|...|+|.|...+ ......+
T Consensus        27 v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S--~L~v~---~~~~~~ytC~V~H~~l~~p~~~~   94 (103)
T d1hdma1          27 VSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFS--YLNFT---PEPSDIFSCIVTHEPDRYTAIAY   94 (103)
T ss_dssp             EEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEE--EEEEC---CCTTCCEEEEEEETTTTEEEEEE
T ss_pred             EeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEE--EEEEe---cCCCCEEEEEEEeCCCCCCEEEE
Confidence            57777888999999988765322111   12344454432  34443   456667999999764 3344443

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00043  Score=37.91  Aligned_cols=65  Identities=9%  Similarity=0.122  Sum_probs=37.2

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCC--CCCEEEEEEeeccC-CceEE
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQT--TDAGSYQCQIGTLE-PKEIT   70 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~--~D~G~Y~C~~~~~~-~~~~~   70 (78)
                      +.|+-+++..|+|.+++..+..+...   ...++.|++.  ..|+|..-+-  .-...|+|.|.... ..+..
T Consensus        30 ~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~  100 (105)
T d1dn0b2          30 AQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKN  100 (105)
T ss_dssp             EEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEE--EEEEECTTCC---CCCEEEEEEECTTCCEEEE
T ss_pred             EecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEE--EEEEEcHHHhccCCCCEEEEEEEECCCCEEeE
Confidence            57777888999999876554433221   1244555443  2455544432  12237999999753 43433

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.07  E-value=0.00014  Score=39.67  Aligned_cols=56  Identities=7%  Similarity=0.073  Sum_probs=34.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEE----eccc----ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILT----AGST----KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~----~~~~----~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.-+.+..|.|+||+..+.    .+..    ....++-|++.  ..|.|.   .++...|+|+|...
T Consensus        23 ~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~~~~ytC~V~H~   86 (98)
T d1u58a1          23 ARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKH--IDVYVD---GGLEHVYSCRVKGI   86 (98)
T ss_dssp             EEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEE--EEEEEC---TTCGGGEEEEEEEG
T ss_pred             EEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEE--EEEEEC---CCCCCEEEEEEEeC
Confidence            677888899999999654332    1111    11245566554  245553   45567899999854

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00023  Score=38.40  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=28.7

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeeccC----CceEEEEEEEEe
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGTLE----PKEITHTLEILG   77 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~~~----~~~~~~~L~V~g   77 (78)
                      ....+.|.+|..+|+|.|.|.....+    ..+....|.|.|
T Consensus        52 ~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~VtG   93 (93)
T d1olla2          52 VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG   93 (93)
T ss_dssp             SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEEC
T ss_pred             ceeEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEeeC
Confidence            34689999999999999999754322    446777777765

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00046  Score=37.44  Aligned_cols=61  Identities=7%  Similarity=0.150  Sum_probs=38.9

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|..+.+..|.|++++..+.....   ....++.|++..  .|.|..-+-.....|+|.|...+
T Consensus        26 ~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S--~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          26 MITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYS--KLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEE--EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEE--EEEECHHHhCCCCEEEEEEEECC
Confidence            36777777899999998876532211   123566676653  55554443344678999999653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00044  Score=37.53  Aligned_cols=60  Identities=12%  Similarity=0.165  Sum_probs=39.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|+|++++..+.....   ....++.|++.  ..|.|..-+-.....|+|.|...+
T Consensus        28 v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~--S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          28 VKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY--SKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEE--EEEEECHHHhCCCCEEEEEEEeCC
Confidence            5677788899999998765432111   22356777665  356666654455667999999754

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.03  E-value=0.00031  Score=38.16  Aligned_cols=60  Identities=10%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|+|++++.....+..   ....++.|++.  ..|.|..-+-.....|+|.|...+
T Consensus        28 v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          28 VTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMY--SKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             EEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEE--EEEEECHHHcCCCCEEEEEEEeCC
Confidence            5676677899999998765332211   12466778765  366665444334567999998643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.002  Score=34.86  Aligned_cols=60  Identities=12%  Similarity=0.299  Sum_probs=38.7

Q ss_pred             Eecc-CCCCcEEEEEeCCEEEEeccc--ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGL-PDKNYVLAWKRGIAILTAGST--KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~-~~~~~~v~W~k~~~~l~~~~~--~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|. |.+...+.|.+++..+.....  ....++.|++..  .|.|..-+-.....|+|.|....
T Consensus        28 v~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S--~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          28 IHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSN--QLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             EEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEE--EEEECGGGSCTTCEEEEEEEETT
T ss_pred             EEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEE--EEEEeHHHccCCCEEEEEEEECC
Confidence            5674 566678899886544432211  224667887653  67777776555677999998643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.001  Score=36.46  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=25.3

Q ss_pred             CCCCEEEE--cCeEEEEccCCCCCCEEEEEEee
Q psy14103         32 PDKRIQLV--DGYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus        32 ~~~R~~~~--~~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      ...||+..  ++.+|.|..++.+|++.|.|...
T Consensus        62 ~~~~f~~~~~~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          62 PGADYLATRVTDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             TTEEEEEEEEETTEEEEEEESCCSCEEEEEEEE
T ss_pred             cccccccccccccEEEEecCCccCCccEEEEEe
Confidence            35678764  55789999999999999999865

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00032  Score=38.38  Aligned_cols=60  Identities=13%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc--------cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK--------VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~--------~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|.|++++..+..+...        ...++.|++..  .|.|..-+-.....|+|.|....
T Consensus        29 ~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S--~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          29 ARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTS--ILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             EEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEE--EEEEEHHHHHHTCCEEEEEECTT
T ss_pred             EEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEE--EEEEcHHHhCCCCEEEEEEEeCC
Confidence            56777778999999998877544221        12356776653  56655544344678999998653

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00033  Score=37.74  Aligned_cols=58  Identities=16%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+++..|+|++++..+..+...    ...+..|++.  ..|.+.   .++...|+|+|...+
T Consensus        23 ~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~--s~l~v~---~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          23 WALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKW--AAVVVP---SGEEQRYTCHVQHEG   84 (95)
T ss_dssp             EEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEE--EEEEEE---TTCGGGEEEEEECTT
T ss_pred             EEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEE--EEEEEE---cCCCCEEEEEEEECc
Confidence            467888899999999998877654321    1233444433  244443   345568999999754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0049  Score=32.85  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             Eec-cCCCCcEEEEEeCCEEEEeccccc---CCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSG-LPDKNYVLAWKRGIAILTAGSTKV---TPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~-~~~~~~~v~W~k~~~~l~~~~~~~---~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++| +|.  ..|.|++++..+.......   ..++.|.+..  .|.+.   ..+...|+|.+....
T Consensus        25 ~~g~~P~--~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S--~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          25 TSGGFPE--PHLSWLENGEELNAINTTVSQDPETELYAVSS--KLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             EEEESSC--EEEEEEESSCEECCSEEEEEECTTTCCEEEEE--EEEEE---TTSCEEEEEEEEETT
T ss_pred             ECcccCC--CEEEEecCCcEecccceeeEecCCCccEEEEE--EEEcc---CCccceEEEEEEecC
Confidence            344 554  4899999877765433221   2456777654  56654   356789999999754

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0016  Score=34.73  Aligned_cols=58  Identities=10%  Similarity=0.147  Sum_probs=37.3

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|++++..+.....   ....++.|++..  .|.+   ...|...|+|+|....
T Consensus        23 ~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s--~l~~---~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          23 LAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWV--VVAV---PPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             EEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEE--EEEE---CTTCCSCEEEEEEETT
T ss_pred             EEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEE--EeEe---CCCCCCEEEEEEEECC
Confidence            36777778899999998877643211   123445555442  3444   4566678999999653

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00064  Score=36.77  Aligned_cols=60  Identities=12%  Similarity=0.217  Sum_probs=38.9

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|+|++++........   ....++.|++..  .|.|..-+-...-.|+|.|...+
T Consensus        28 v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S--~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          28 VKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS--KLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEE--EEEEEHHHHHTTCCEEEEEECTT
T ss_pred             EEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEE--EEEECHHHcCCCCEEEEEEEeCC
Confidence            5677777899999998876532211   123566776643  56666544344557999999753

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.83  E-value=0.0016  Score=35.02  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             EeccCCCCcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.-+.+..|+|++++..+.....   ....++.|++..  .|.|..   +|...|+|++...
T Consensus        25 a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S--~L~v~~---~~~~~ytC~V~H~   83 (96)
T d2h26a1          25 VSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRA--TLDVAD---GEAAGLSCRVKHS   83 (96)
T ss_dssp             EEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEE--EEEEEG---GGCTTEEEEEEEG
T ss_pred             EEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEE--EEEEeC---ccCCEEEEEEEeC
Confidence            5677778899999998766532211   124566676543  455543   4566899999964

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.71  E-value=0.0027  Score=33.83  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             eEeccCCCCcEEEEEeCCEEEEecccc-----cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          3 YLSGLPDKNYVLAWKRGIAILTAGSTK-----VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         3 ~~~~~~~~~~~v~W~k~~~~l~~~~~~-----~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      .++|.-+.+..|+|++++..+..+...     ...+.-|+..  ..|.|.   .+|...|+|++...+
T Consensus        23 ~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~--s~l~v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          23 RASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTW--VATRIC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             EEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEE--EEEEEE---TTCGGGEEEEEEETT
T ss_pred             EEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEE--EEEEEc---CCCCCEEEEEEEECC
Confidence            367877788999999998777654321     1233445443  234443   345557999998643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00037  Score=37.91  Aligned_cols=58  Identities=16%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             EeccCCCCcEEEEEeCCEEEEec-ccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAG-STKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~-~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|+.+.+..|.|.+++...... ......++.|+..  ..|+|..-+- +.|.|+|.|...
T Consensus        29 ~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~--S~L~v~~~~w-~~~~ytC~V~H~   87 (101)
T d1kcvh2          29 VKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLS--SNTTVASGTW-PSASVTCLVAHP   87 (101)
T ss_dssp             EEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEE--EEEEEETTTT-TTSCCEEEEEEG
T ss_pred             EEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEE--EEEEEchhhc-CCCeEEEEEEeC
Confidence            57777788999998755321110 0112245666654  3566654443 467899999964

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0054  Score=32.86  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             cCeEEEEccCCCCCCEEEEEEeec
Q psy14103         40 DGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        40 ~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ....+.|.+|..+|+|.|.|....
T Consensus        54 ~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          54 HPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             SSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             cccEEEEeccccccCcEEEEEEEc
Confidence            347899999999999999998764

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.49  E-value=0.0025  Score=34.69  Aligned_cols=57  Identities=11%  Similarity=0.147  Sum_probs=35.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|.-+.+..|+|++++..+..+...   ...++.|+..  ..|.|..-+-  ...|+|+|...
T Consensus        33 v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~--S~L~v~~~~w--~~~ytC~V~H~   92 (107)
T d1hxmb2          33 LEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF--SWLTVPEKSL--DKEHRCIVRHE   92 (107)
T ss_dssp             EEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEE--EEEEECTGGG--GSCEEEEEEET
T ss_pred             EeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEE--EEEEEecccC--CCeEEEEEEEC
Confidence            56777788999999976655433221   1345566554  3566654332  23699999864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.021  Score=30.62  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=30.3

Q ss_pred             CCEEEEcCeEEEEccCCCCCCEEEEEEeeccCCceEEEEEE
Q psy14103         34 KRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEPKEITHTLE   74 (78)
Q Consensus        34 ~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~L~   74 (78)
                      ..++-....-++|.+++.+|+|.|.|.+...+....+..|.
T Consensus        51 ~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~yl~   91 (95)
T d1fltx_          51 KRIIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLT   91 (95)
T ss_dssp             SSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEECCCCCEEEeCCCcccCeEEEEEEEECCEEEEEEEEE
Confidence            44555567789999999999999999998665433334443

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.37  E-value=0.0066  Score=33.56  Aligned_cols=60  Identities=10%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             EeccCC--CCcEEEEEeCCEEEEecccc---cCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPD--KNYVLAWKRGIAILTAGSTK---VTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~--~~~~v~W~k~~~~l~~~~~~---~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|+.+  .+..|+|++++..+......   ...+++|++..  .|.|..-+=.....|+|+|....
T Consensus        41 v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S--~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          41 VVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS--ALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             EEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEE--EEECCHHHHHTTCEEEEEEECTT
T ss_pred             eecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEE--EEEEeHHHhCCCCeEEEEEEECC
Confidence            466544  36889999988766443221   13566666542  45544332234466999999753

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.0047  Score=33.26  Aligned_cols=60  Identities=10%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             EeccCCC--CcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDK--NYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~--~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|+.+.  +..|+|.+++..+..+..   ....++.|++..  .|.|..-+=...-.|+|+|....
T Consensus        25 v~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S--~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          25 VVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVS--ELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             EEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEE--EEECCHHHHHTTCCEEEEEECSS
T ss_pred             EEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEE--EEEECHHHhcCCCEEEEEEEeCC
Confidence            4565553  489999997665543321   123566665542  45543332223345999999753

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0085  Score=32.16  Aligned_cols=60  Identities=10%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             EeccCCC--CcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDK--NYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~--~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|+.+.  +..+.|.+++..+.....   ....++.|++..  .|.|..-+-...-.|+|.|....
T Consensus        27 ~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S--~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          27 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS--VLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             EEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEE--EEECCHHHHHTTCCEEEEEECTT
T ss_pred             EEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEE--EEEEcHHHcCCCCEEEEEEEeCC
Confidence            4565444  578899998876643321   123566776553  55555443234558999999653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0019  Score=34.98  Aligned_cols=59  Identities=15%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             EeccCCCCcEEEEEeCCEEEEe-cccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAILTA-GSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l~~-~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      +.|..+.+..|+|.+++..... .......++.|+..  ..|.|..-+- +.+.|+|.|....
T Consensus        29 ~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~--S~L~v~~~~w-~~~~ytC~V~H~~   88 (102)
T d1mjuh2          29 VKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVTSSTW-PSQSITCNVAHPA   88 (102)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEECTTTT-TTSCCEEEEEEGG
T ss_pred             EeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEE--EEEEEehhHc-CCceEEEEEEECC
Confidence            5677778899999765421100 00111345666554  3566665543 3568999999653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0039  Score=33.72  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=21.1

Q ss_pred             CeEEEEccCCCCCCEEEEEEeecc
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      -+.|.+..+-++|.|.|.|.+...
T Consensus        67 ~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          67 VFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEEEEeeeeeecCCCceEEecCCC
Confidence            367899999999999999999854

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.018  Score=30.60  Aligned_cols=42  Identities=26%  Similarity=0.458  Sum_probs=23.6

Q ss_pred             EeccCCCCcEEEEEeCCE--EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEE
Q psy14103          4 LSGLPDKNYVLAWKRGIA--ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQ   60 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~--~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~   60 (78)
                      ++|-...+-.|.|.|++.  ++..|               .+|+|.==...|+|+|+|+
T Consensus        26 L~C~t~eE~~I~W~kd~~se~~~~G---------------ntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          26 LTCDTPEEDGITWTLDQSSEVLGSG---------------KTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             EECSSSCCSSCEEEETTCCCCCEES---------------SEEEEEECSGGGCEEEEEE
T ss_pred             EecCCCcccccEEeeCCccccccCC---------------CEEEEEEEeccCCcceeEe
Confidence            455555555688888642  22221               2333322223699999998

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0068  Score=32.48  Aligned_cols=22  Identities=9%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             eEEEEccCCCCCCEEEEEEeec
Q psy14103         42 YNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        42 ~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ..+.|.+|..+|+|.|+|....
T Consensus        60 a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          60 AIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             EEEEECCCCTTSCEEEEEEEEC
T ss_pred             EEEEeeecccCCCeEEEEeeEc
Confidence            5799999999999999998763

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.68  E-value=0.0082  Score=32.14  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             CeEEEEccCCCCCCEEEEEEeec
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...+.|.+|..+|+|.|.|....
T Consensus        56 ~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          56 KANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEB
T ss_pred             EEEEEEcccCcccCeEEEEEEEc
Confidence            35799999999999999998763

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.012  Score=31.53  Aligned_cols=59  Identities=8%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             EeccCCCCcEEEEEeCCEEE--EecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIAIL--TAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~~l--~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|..+.+..|+|.+++..-  .........++.|++..  .|+|..-+- ....|+|.+....
T Consensus        29 ~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S--~L~v~~~~w-~~~~ytC~V~H~~   89 (103)
T d1c5ch2          29 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS--VVTVPSSSL-GTQTYICNVNHKP   89 (103)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEE--EEEEEGGGG-GTCCCEEEEEEGG
T ss_pred             EEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEE--EEEECcccc-CCCeEEEEEEeCC
Confidence            56777788999998754221  11111123566676643  566654432 2457999999753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.20  E-value=0.0071  Score=32.47  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=18.0

Q ss_pred             CeEEEEccCCCCCCEEEEEEee
Q psy14103         41 GYNLQITDLQTTDAGSYQCQIG   62 (78)
Q Consensus        41 ~~sL~I~~v~~~D~G~Y~C~~~   62 (78)
                      ...+.|..+...|+|.|.|...
T Consensus        58 ~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2          58 TFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             EEEEEEEEEECCSCEEEEEEEE
T ss_pred             cEEEEEeccccccCEEEEEEee
Confidence            3456888888899999999765

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.042  Score=29.74  Aligned_cols=40  Identities=23%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             CCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCC-CCCEEEEEEee
Q psy14103         10 KNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQT-TDAGSYQCQIG   62 (78)
Q Consensus        10 ~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~-~D~G~Y~C~~~   62 (78)
                      +.-.|.|.++...+.-      .+++       .|.+.+.+. +|+|-|.|-..
T Consensus        25 ~~~~I~Wkkn~~~i~g------~~~~-------~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          25 SDENLKWEKNGQELPQ------KHDK-------HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             CCTTCEEEETTEEECS------CCCS-------EEEEESCCTTTSCEEEEEECS
T ss_pred             CCCceEEeeccccCCC------CCCc-------EEEEccccccccCcceEEecC
Confidence            3446899999888752      2333       344455544 89999999643

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0014  Score=35.32  Aligned_cols=57  Identities=12%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             Eecc-CCCCcEEEEEeCCE-EEEecccccCCCCCEEEEcCeEEEEccCCCCC---CEEEEEEeeccC
Q psy14103          4 LSGL-PDKNYVLAWKRGIA-ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTD---AGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~-~~~~~~v~W~k~~~-~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D---~G~Y~C~~~~~~   65 (78)
                      ++|+ ++.+..|+|++++. ...........++.|++..     ...|..+|   .-.|+|+|....
T Consensus        27 v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S-----~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          27 LTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS-----VLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             ETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEE-----ECTTTHHHHHHTCEEEEEECCSS
T ss_pred             EeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEE-----EEEEcHHHcCCCCeEEEEEEeCC
Confidence            5676 56778999997542 2222222223455554432     23344443   569999999653

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.66  E-value=0.007  Score=33.04  Aligned_cols=59  Identities=12%  Similarity=0.238  Sum_probs=33.7

Q ss_pred             EeccCCCCcEEEEEeCCE--EEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccC
Q psy14103          4 LSGLPDKNYVLAWKRGIA--ILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLE   65 (78)
Q Consensus         4 ~~~~~~~~~~v~W~k~~~--~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   65 (78)
                      ++|.-+++..|.|.+++.  ..... .....++.|++..  .|.|..-+-...-.|+|.|...+
T Consensus        36 v~gf~P~~i~v~W~~~~~~~~~~~~-~~~~~dgtys~~S--~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          36 ITGFYPADINVEWDSSEPSDYKNTP-PVFDTDGSFFLYS--RLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             EESCCSSCCEEESSSCCTTTEEEEE-EECCSSCCCEEEE--EECCCSSCCHHHHCCEEEEEETT
T ss_pred             EEeeECCCcEEEEeeCCCCCcEEcc-cEECCCCcEEEEE--EEEECHHHhCCCCEEEEEEEeCC
Confidence            678888889999987542  11111 1123566676542  34443322111456999999754

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.27  Score=25.53  Aligned_cols=47  Identities=13%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             CCCcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeeccCC
Q psy14103          9 DKNYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTLEP   66 (78)
Q Consensus         9 ~~~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~   66 (78)
                      .....|.|+|++..+...           ...+.+|-+=..-..=.|.|.|......+
T Consensus        26 ~~~k~i~W~kdg~~i~~~-----------~~~~ktlnLG~~~~DPRG~Y~C~~~~~~s   72 (81)
T d1sy6a1          26 AEAKNITWFKDGKMIGFL-----------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS   72 (81)
T ss_dssp             SCSSEEEEEETTEEEEEE-----------ESSCCCEEEEEGGGCCEEEEEEESSSSCC
T ss_pred             CCCcEEEEecCCeEeecc-----------cCCcceeecCCcccCCCcceEcCCCCcCC
Confidence            344589999988766431           11233444444545567999998654333

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.087  Score=27.86  Aligned_cols=59  Identities=17%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             EeccCCC--CcEEEEEeCCEEEEeccc---ccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeecc
Q psy14103          4 LSGLPDK--NYVLAWKRGIAILTAGST---KVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGTL   64 (78)
Q Consensus         4 ~~~~~~~--~~~v~W~k~~~~l~~~~~---~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   64 (78)
                      ++|+.+.  ...+.|.+++........   ....++.|++..  .|.|..-+-.....|+|+|...
T Consensus        25 v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S--~L~v~~~~w~~g~~~tC~V~H~   88 (103)
T d1fp5a1          25 VVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTS--TLPVGTRDWIEGETYQCRVTHP   88 (103)
T ss_dssp             EEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEE--EEECCHHHHHTTCCEEEEEECS
T ss_pred             EEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEE--EEEEcHHHhCCCCeEEEEEEEC
Confidence            5565554  457788775433221111   112445565442  4554433323366899999975

>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human herpesvirus 1 [TaxId: 10298]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Alphaherpesvirus glycoprotein E
species: Human herpesvirus 1 [TaxId: 10298]

Probab=88.29  E-value=0.69  Score=27.25  Aligned_cols=39  Identities=15%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             CCCEEEE-cCeEEEEccCCCCCCEEEEEEeeccCCceEEE
Q psy14103         33 DKRIQLV-DGYNLQITDLQTTDAGSYQCQIGTLEPKEITH   71 (78)
Q Consensus        33 ~~R~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~   71 (78)
                      .+++... +.-.|++.|+..+++|.|.|.+.-.+..+...
T Consensus       115 ~~~l~~~~~~v~L~F~~a~~~~sGLYVfV~~~ngHveaW~  154 (177)
T d2giya1         115 VPGLAWQAASVNLEFRDASPQHSGLYLCVVYVNDHIHAWG  154 (177)
T ss_dssp             CTTEEECTTSSCEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccccccccCCcceEEccCCcccCceEEEEEEECCceeeeE
Confidence            3455444 45689999999999999999999666444333

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.85  E-value=1.8  Score=22.49  Aligned_cols=42  Identities=17%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             CcEEEEEeCCEEEEecccccCCCCCEEEEcCeEEEEccCCCCCCEEEEEEeec
Q psy14103         11 NYVLAWKRGIAILTAGSTKVTPDKRIQLVDGYNLQITDLQTTDAGSYQCQIGT   63 (78)
Q Consensus        11 ~~~v~W~k~~~~l~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   63 (78)
                      ...|.|++++..+....     ..      +.+|-+=+.-..=.|.|.|....
T Consensus        33 ~k~i~W~kdg~~i~~~~-----~~------~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          33 DKTIKWLKDGSIISPLN-----AT------KNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             CSCEEEEETTEECCCSS-----CC------SSCCEEEETTSCCEEEEEEEESS
T ss_pred             CcEEEEecCCceecccc-----cc------cceeecCCcccCCCcceEcCCCc
Confidence            35789999887764321     11      12333333444557999998554