Psyllid ID: psy14140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHcccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mahplfiravsgdvkcssqagsmgdrLMLSNCLSLLvqhgtlpdyheeaklhgklhgctcrkgestkvrdqgvdpnlkdgdgatplhfaasRGHADCVRWLLRyggklvpdkfgkspindaaenqqmevrdqgvdpnlkdgdgatplhfaasRGHADCVRWLLRyggklvpdkfgkspindaaenqqmevstvSPVVRRLLTIQKVP
Flexible Loop (DISEMBL)
mahplfiravsgdvkcSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGctcrkgestkvrdqgvdpnLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPindaaenqqmevstvspvvrrlltiqkvp
Low Complexity Region (SEG)
MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP
Disordered region (IsUnstruct)
*****FIRAVSGDV*********GDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR***********************PLHFAASRGHADCVRWLLRYGGKLVPDK**********************************LHFAASRGHADCVRWLLRYGGKLVPDKF*********************************
Disordered Region (DISOPRED)
MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQ***
Disordered Region (DISEMBL)
MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP
Disordered Region (DISPRO)
*AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9ET47	871	Espin OS=Mus musculus GN=	yes	N/A	0.531	0.126	0.354	6e-15
Q63618	837	Espin OS=Rattus norvegicu	yes	N/A	0.526	0.130	0.354	2e-14
B1AK53	854	Espin OS=Homo sapiens GN=	yes	N/A	0.410	0.099	0.415	2e-13
Q502K3	1071	Serine/threonine-protein	no	N/A	0.565	0.109	0.390	3e-13
Q6ZVH7	1005	Espin-like protein OS=Hom	no	N/A	0.763	0.157	0.365	5e-13
E1C656	942	E3 ubiquitin-protein liga	no	N/A	0.685	0.150	0.302	1e-12
Q54KA7	986	Ankyrin repeat, PH and SE	yes	N/A	0.521	0.109	0.368	1e-12
Q28BK1	912	E3 ubiquitin-protein liga	yes	N/A	0.685	0.155	0.302	1e-12
Q6DCL5	944	E3 ubiquitin-protein liga	N/A	N/A	0.685	0.150	0.302	1e-12
Q54HW1	232	26S proteasome non-ATPase	no	N/A	0.526	0.469	0.359	2e-12

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 31/141 (21%)

Query: 60  CRKG--ESTK--VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
           C++G  E TK  V++   DP+L+  DG TPLH AA  GH   + WL+ +           
Sbjct: 180 CQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFA---------- 229

Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG 175
               D + ++Q             D DGAT +HFAASRGH   + WLL +G ++  D +G
Sbjct: 230 ----DVSFSEQ-------------DHDGATAMHFAASRGHTKVLSWLLLHGAEISQDLWG 272

Query: 176 KSPINDAAENQQMEVSTVSPV 196
            +P++DAAEN ++E   +  V
Sbjct: 273 GTPLHDAAENGELECCQILAV 293

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.
Mus musculus (taxid: 10090)

>sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 32/141 (22%)

Query: 60  CRKG--ESTK--VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
           C++G  E TK  V++   DP+L+  DG TPLH AA  GH   + WL+ +           
Sbjct: 180 CQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFA---------- 229

Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG 175
               D +  Q              D DGAT +HFAASRGH   + WLL +G ++  D +G
Sbjct: 230 ----DVSFEQ--------------DHDGATAMHFAASRGHTKVLSWLLLHGAEISQDLWG 271

Query: 176 KSPINDAAENQQMEVSTVSPV 196
            +P++DAAEN ++E   +  V
Sbjct: 272 GTPLHDAAENGELECCQILAV 292

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Rattus norvegicus (taxid: 10116)

>sp|B1AK53|ESPN_HUMAN Espin OS=Homo sapiens GN=ESPN PE=1 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 78  KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQG 133
           +D DGAT +HFAASRGH   + WLL +GG++  D +G +P++DAAEN ++E    +   G
Sbjct: 236 QDKDGATAMHFAASRGHTKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNG 295

Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWL 162
            + +++D DG T    +   GH+ C R+L
Sbjct: 296 AELDVRDRDGYTAADLSDFNGHSHCTRYL 324

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Homo sapiens (taxid: 9606)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 6/123 (4%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----R 130
           N+ D  G  PLH AA  G+ + V+ LL  G  L   DK  + PI+ AA    +EV     
Sbjct: 134 NMADRTGRAPLHHAAQSGYQEMVKLLLNKGANLSASDKKDRQPIHWAAYLGHLEVVKLLV 193

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
            QG D + KD  G TPLH AA+ GH D V++LLR G ++  P+ FG + ++ A    Q  
Sbjct: 194 SQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVACYTGQEA 253

Query: 190 VST 192
           V+ 
Sbjct: 254 VAN 256

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q6ZVH7|ESPNL_HUMAN Espin-like protein OS=Homo sapiens GN=ESPNL PE=2 SV=3

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 88/189 (46%), Gaps = 31/189 (16%)

Query: 2   AHPLFIRAVSGDVKC----SSQAGSMGDRLMLSNC--LSLLVQHGTL-----------PD 44
           A PL   AVSGD+ C    ++  GS  +R   S    L L  Q G L            D
Sbjct: 138 ARPLHHAAVSGDLTCLKLLTAAHGSSVNRRTRSGASPLYLACQEGHLHLAQFLVKDCGAD 197

Query: 45  YHEEAKLHG--KLHGCTCRKGESTKV-----RDQGVDPNLKDGDGATPLHFAASRGHADC 97
            H  A L G   LH    R   S  V      D G+    +D +GAT LHFAA  GH   
Sbjct: 198 VHLRA-LDGMSALHAAAARGHYSLVVWLVTFTDIGL--TARDNEGATALHFAARGGHTPI 254

Query: 98  VRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASR 153
           +  LL  G  ++ D +G +P++DAAEN QME    +    VDP+L+D DG T    A   
Sbjct: 255 LDRLLLMGTPILRDSWGGTPLHDAAENGQMECCQTLVSHHVDPSLRDEDGYTAADLAEYH 314

Query: 154 GHADCVRWL 162
           GH DC ++L
Sbjct: 315 GHRDCAQYL 323

Homo sapiens (taxid: 9606)

>sp|E1C656|HACE1_CHICK E3 ubiquitin-protein ligase HACE1 OS=Gallus gallus GN=HACE1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 32  CLSLLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGES---TKVRDQGVDPNLKDGDGA 83
           CL LL++ G  P+Y +       + GCT      R G+    +K+ +   D N+ + +G 
Sbjct: 80  CLVLLLKKGANPNYQD-------ISGCTPLHLAARNGQKKCMSKLLEYSADVNICNNEGL 132

Query: 84  TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNL 138
           T +H+ A  G  + +  L+++   + V D  G++ ++ A +N        + D G D N 
Sbjct: 133 TAIHWLAVNGRTELLHDLVQHVSNVDVEDAMGQTALHVACQNGHKTTVQCLLDSGADINR 192

Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 180
            +  GATPL+FA S G  D  + LL  G K +PDK G +P++
Sbjct: 193 PNVSGATPLYFACSHGQRDTAQILLMRGAKYLPDKNGITPLD 234

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 6/114 (5%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VR 130
           N+KD +GATPLH A+  GH+ C + L+  G  + + D  G +P++ AA N + +    + 
Sbjct: 362 NIKDEEGATPLHKASFNGHSSCAKLLVDKGAPICIVDSQGATPLHKAAFNGRSKCLATLI 421

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
             G +  +KD  G TPLH AA  GH+DC R LL+ G  +   D    +P++ A+
Sbjct: 422 RSGAELEVKDSQGGTPLHNAAYNGHSDCCRILLKKGANVNAVDTHSSTPLHLAS 475

Dictyostelium discoideum (taxid: 44689)

>sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 20/162 (12%)

Query: 32  CLSLLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGES---TKVRDQGVDPNLKDGDGA 83
           CL LL++ G  P+Y +       + GCT      R G+    +K+ +   D N+ + +G 
Sbjct: 80  CLVLLLKRGADPNYQD-------ISGCTPLHLAARNGQKKCMSKLLEYNADVNICNNEGL 132

Query: 84  TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN----QQMEVRDQGVDPNL 138
           T +H+ A  G  + +  L+++   + V D  G++ ++ A +N      + + D G D N 
Sbjct: 133 TAIHWLAVNGRTELLHDLVQHVTNVDVEDAMGQTALHVACQNGHKTTVLCLLDSGADINR 192

Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 180
            +  GATPL+FA S G  D  + LL  G K +PDK G +P++
Sbjct: 193 PNVSGATPLYFACSHGQRDTAQILLLRGAKYLPDKNGVTPLD 234

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6DCL5|HACE1_XENLA E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 20/162 (12%)

Query: 32  CLSLLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGES---TKVRDQGVDPNLKDGDGA 83
           CL LL++ G  P+Y +       + GCT      R G+    +K+ +   D N+ + +G 
Sbjct: 80  CLVLLLKRGADPNYQD-------ISGCTPLHLAARNGQKKCMSKLLEYNADVNICNNEGL 132

Query: 84  TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN----QQMEVRDQGVDPNL 138
           T +H+ A  G  + +  L+++   + V D  G++ ++ A +N      + + D G D N 
Sbjct: 133 TAIHWLAVNGRTELLHDLVQHVTNVDVEDAMGQTALHVACQNGHKTTVLCLLDSGADINR 192

Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 180
            +  GATPL+FA S G  D  + LL  G K +PDK G +P++
Sbjct: 193 PNVSGATPLYFACSHGQRDTAQILLLRGAKYLPDKNGVTPLD 234

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
           G DPN  +    TPLH+A+S+G +D V  LL +G K   D  G +PI+ A+ N  +   +
Sbjct: 103 GADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPIHRASSNGSVATVE 162

Query: 132 Q----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPIN 180
           +      + N  + +G TPLH AA   H D V  LL++G    + +K  K+PI+
Sbjct: 163 RLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPID 216

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
242013797	834	forked protein, putative [Pediculus huma	0.589	0.146	0.542	4e-28
328723047	939	PREDICTED: hypothetical protein LOC10016	0.550	0.121	0.570	2e-27
189240280	1371	PREDICTED: similar to forked CG5424-PB [	0.570	0.086	0.528	4e-27
270011590	1273	hypothetical protein TcasGA2_TC005627 [T	0.719	0.117	0.435	4e-27
195447980	1766	GK25809 [Drosophila willistoni] gi|19416	0.584	0.068	0.531	4e-27
195130713	1471	GI15556 [Drosophila mojavensis] gi|19390	0.603	0.084	0.522	7e-27
116007178	1918	forked, isoform F [Drosophila melanogast	0.584	0.063	0.531	8e-27
320542263	1544	forked, isoform I [Drosophila melanogast	0.565	0.075	0.540	8e-27
28571234	1509	forked, isoform C [Drosophila melanogast	0.565	0.077	0.540	8e-27
195402139	718	GJ14895 [Drosophila virilis] gi|19414737	0.603	0.174	0.522	1e-26

>gi|242013797|ref|XP_002427587.1| forked protein, putative [Pediculus humanus corporis] gi|212512002|gb|EEB14849.1| forked protein, putative [Pediculus humanus corporis]

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 7/129 (5%)

Query: 68  VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQ 125
           V    +  N +  +  TP++ AA  GH + +++L L  GG L V  K G +P++ AA+  
Sbjct: 30  VETSELSANTQMDNDVTPVYLAAQEGHLEVLKYLVLEAGGSLYVRAKDGMAPVHAAAQMG 89

Query: 126 QME-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 180
            +      V+DQGVDPNL+D DGATPLHFAASRGH D VRWLLR+GG+L  DK+GKSPIN
Sbjct: 90  CLTCLKWMVQDQGVDPNLRDVDGATPLHFAASRGHVDTVRWLLRHGGRLTLDKYGKSPIN 149

Query: 181 DAAENQQME 189
           DAAENQQME
Sbjct: 150 DAAENQQME 158

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723047|ref|XP_001946272.2| PREDICTED: hypothetical protein LOC100163469 [Acyrthosiphon pisum]

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 85/121 (70%), Gaps = 7/121 (5%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME----- 128
           N +  +  TP++ AA  GH + +++L L  GG L V  K G +P++ AA+   +      
Sbjct: 50  NTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRAKDGMAPVHAAAQMGCLNCLKWM 109

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
           VRDQGVDPNL+DGDGAT LHFAASRGH D VRWLLR+G  LV DK+GKSPINDAAEN QM
Sbjct: 110 VRDQGVDPNLRDGDGATALHFAASRGHVDTVRWLLRHGANLVVDKYGKSPINDAAENHQM 169

Query: 189 E 189
           E
Sbjct: 170 E 170

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240280|ref|XP_001812682.1| PREDICTED: similar to forked CG5424-PB [Tribolium castaneum]

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 7/125 (5%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME----- 128
           N +  +  TP++ AA  GH D +++L L  GG L V  K G +PI+ A++   +      
Sbjct: 549 NTQMDNDVTPVYLAAQEGHLDVLKFLVLEAGGSLYVRAKDGMAPIHAASQMGCLNCVKWM 608

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
           +++QGVDPNL+DGDGATPLHFAASRGH + VRWLL++G +L  DK+GKSPINDAAENQQ+
Sbjct: 609 IQEQGVDPNLRDGDGATPLHFAASRGHLETVRWLLKHGARLSLDKYGKSPINDAAENQQV 668

Query: 189 EVSTV 193
           E   V
Sbjct: 669 ECLNV 673

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011590|gb|EFA08038.1| hypothetical protein TcasGA2_TC005627 [Tribolium castaneum]

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 28/177 (15%)

Query: 31  NCLSLLVQHGTLPDYHEE-------AKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGA 83
           +C+ LLV   + PD   +       AK H  L+   C               N +  +  
Sbjct: 413 DCVRLLVD--STPDLSFQPVRMKLLAKCHKTLNKLNC------------FSANTQMDNDV 458

Query: 84  TPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME-----VRDQGVDP 136
           TP++ AA  GH D +++L L  GG L V  K G +PI+ A++   +      +++QGVDP
Sbjct: 459 TPVYLAAQEGHLDVLKFLVLEAGGSLYVRAKDGMAPIHAASQMGCLNCVKWMIQEQGVDP 518

Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTV 193
           NL+DGDGATPLHFAASRGH + VRWLL++G +L  DK+GKSPINDAAENQQ+E   V
Sbjct: 519 NLRDGDGATPLHFAASRGHLETVRWLLKHGARLSLDKYGKSPINDAAENQQVECLNV 575

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447980|ref|XP_002071456.1| GK25809 [Drosophila willistoni] gi|194167541|gb|EDW82442.1| GK25809 [Drosophila willistoni]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 7/128 (5%)

Query: 69  RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQ 126
           R   V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   
Sbjct: 665 RRSVVSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGC 724

Query: 127 ME-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIND 181
           ++     V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPIND
Sbjct: 725 LDCLKWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPIND 784

Query: 182 AAENQQME 189
           AAENQQ+E
Sbjct: 785 AAENQQVE 792

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130713|ref|XP_002009796.1| GI15556 [Drosophila mojavensis] gi|193908246|gb|EDW07113.1| GI15556 [Drosophila mojavensis]

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 7/132 (5%)

Query: 69  RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQ 126
           R   V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   
Sbjct: 618 RRSVVSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGC 677

Query: 127 ME-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIND 181
           ++     V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPIND
Sbjct: 678 LDCLKWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPIND 737

Query: 182 AAENQQMEVSTV 193
           AAENQQ+E   V
Sbjct: 738 AAENQQVECLNV 749

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007178|ref|NP_001036284.1| forked, isoform F [Drosophila melanogaster] gi|113193618|gb|ABI30989.1| forked, isoform F [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 7/128 (5%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME-- 128
           V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   ++  
Sbjct: 555 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 614

Query: 129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
              V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPINDAAEN
Sbjct: 615 KWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPINDAAEN 674

Query: 186 QQMEVSTV 193
           QQ+E   V
Sbjct: 675 QQVECLNV 682

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320542263|ref|NP_001188659.1| forked, isoform I [Drosophila melanogaster] gi|318069450|gb|ADV37741.1| forked, isoform I [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 87/124 (70%), Gaps = 7/124 (5%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME-- 128
           V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   ++  
Sbjct: 177 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 236

Query: 129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
              V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPINDAAEN
Sbjct: 237 KWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPINDAAEN 296

Query: 186 QQME 189
           QQ+E
Sbjct: 297 QQVE 300

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28571234|ref|NP_788919.1| forked, isoform C [Drosophila melanogaster] gi|28381638|gb|AAO41690.1| forked, isoform C [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 87/124 (70%), Gaps = 7/124 (5%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME-- 128
           V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   ++  
Sbjct: 142 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 201

Query: 129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
              V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPINDAAEN
Sbjct: 202 KWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPINDAAEN 261

Query: 186 QQME 189
           QQ+E
Sbjct: 262 QQVE 265

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402139|ref|XP_002059667.1| GJ14895 [Drosophila virilis] gi|194147374|gb|EDW63089.1| GJ14895 [Drosophila virilis]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 7/132 (5%)

Query: 69  RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQ 126
           R   V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   
Sbjct: 127 RRSVVSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGC 186

Query: 127 ME-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIND 181
           ++     V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPIND
Sbjct: 187 LDCLKWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPIND 246

Query: 182 AAENQQMEVSTV 193
           AAENQQ+E   V
Sbjct: 247 AAENQQVECLNV 258

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
FB|FBgn0262111	1918	f "forked" [Drosophila melanog	0.584	0.063	0.531	6.6e-27
ZFIN|ZDB-GENE-081105-173	1476	espn "espin" [Danio rerio (tax	0.550	0.077	0.380	3.1e-15
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.724	0.145	0.343	5.1e-15
UNIPROTKB|F1RIL6	694	LOC100738281 "Uncharacterized	0.565	0.168	0.365	1.3e-14
UNIPROTKB|E2R0L1	833	ESPN "Uncharacterized protein"	0.685	0.170	0.356	1.7e-14
UNIPROTKB|I3LT50	839	I3LT50 "Uncharacterized protei	0.565	0.139	0.365	1.7e-14
UNIPROTKB|J9P3M2	876	ESPN "Uncharacterized protein"	0.685	0.162	0.356	1.8e-14
UNIPROTKB|B1AK53	854	ESPN "Espin" [Homo sapiens (ta	0.565	0.137	0.380	5.9e-14
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.565	0.504	0.357	6.2e-14
UNIPROTKB|Q6DCL5	944	hace1 "E3 ubiquitin-protein li	0.710	0.155	0.305	7.8e-14

FB|FBgn0262111 f "forked" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 6.6e-27, P = 6.6e-27
 Identities = 68/128 (53%), Positives = 88/128 (68%)

Query:    73 VDPNLKDGDGATPLHFAASRGHADCVRWL-LRYGGKL-VPDKFGKSPINDAAENQQME-- 128
             V  N +  +  TP++ AA  GH + +++L L  GG L V  + G +PI+ A++   ++  
Sbjct:   555 VSANTQMDNDVTPVYLAAQEGHLEVLKFLVLEAGGSLYVRARDGMAPIHAASQMGCLDCL 614

Query:   129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
                V+DQGVDPNL+DGDGATPLHFAASRGH   VRWLL +G KL  DK+GKSPINDAAEN
Sbjct:   615 KWMVQDQGVDPNLRDGDGATPLHFAASRGHLSVVRWLLNHGAKLSLDKYGKSPINDAAEN 674

Query:   186 QQMEVSTV 193
             QQ+E   V
Sbjct:   675 QQVECLNV 682

GO:0003779 "actin binding" evidence=ISS;NAS

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP

GO:0031941 "filamentous actin" evidence=IDA

GO:0035017 "cuticle pattern formation" evidence=IMP

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

ZFIN|ZDB-GENE-081105-173 espn "espin" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 46/121 (38%), Positives = 75/121 (61%)

Query:    76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGK--LVPDKFGKSPINDAAE---NQQMEVR 130
             N +  +GATPL+ A   GH + V++L++  G    +    G +P++ AA+   N  +   
Sbjct:   166 NFQTKNGATPLYLACQEGHLEVVQYLVKDCGAEPSIRANDGMTPLHAAAQMGHNTVIVWL 225

Query:   131 DQGVDPNL--KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
                 + +L  +D DGAT +HFAASRGHA  + WLL +GG+++ D +G +P++DAAEN ++
Sbjct:   226 MSFTEISLSDRDNDGATAMHFAASRGHAKVLSWLLLHGGEIMTDSWGGTPLHDAAENGEL 285

Query:   189 E 189
             E
Sbjct:   286 E 286

GO:0003779 "actin binding" evidence=IEA

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 203 (76.5 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 56/163 (34%), Positives = 85/163 (52%)

Query:    33 LSLLVQHGTLPDYHEEAKLHGKLH-GCTCRKGESTKVR---DQGVDPNLKDGDGATPLHF 88
             + LL+QHG   D      + GK        KG+ + VR     G   + K+  G TP+ +
Sbjct:   623 VKLLLQHGAQAD---SKTISGKTPLSYAASKGKESVVRLLLQHGAQADSKNNTGQTPISY 679

Query:    89 AASRGHADCVRWLLRYGGKLVPD-KFGKSPINDAA-ENQQMEVR---DQGVDPNLKDGDG 143
             AAS+GH   VR LL +G +      +G++P++ AA +  +  VR   + G   + KDGDG
Sbjct:   680 AASKGHESVVRLLLTHGAQADSKANWGQTPLSRAAFDGHESVVRLFLEHGAQADCKDGDG 739

Query:   144 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
              TPL  AA+ GH   VR LL++G +    D   ++P++ AA N
Sbjct:   740 GTPLSSAAATGHESVVRLLLKHGAQADSKDDDCRTPLSYAASN 782

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RIL6 LOC100738281 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:    78 KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD----QG 133
             +D DGAT +HFAASRGHA  + WLL +GG++  D +G +P++DAAEN ++E        G
Sbjct:    75 QDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNG 134

Query:   134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAAENQQMEVST 192
              + +++D DG T    +   GH+ C R+L       V  +   + P  D  E +Q +   
Sbjct:   135 AELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADL-ETKQPDSGM 193

Query:   193 VSP 195
              SP
Sbjct:   194 SSP 196

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2R0L1 ESPN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 56/157 (35%), Positives = 84/157 (53%)

Query:    40 GTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVR 99
             G LP ++  AK  G         G       +GV+   K+G  ATPL+ A   GH +  +
Sbjct:   138 GALPIHYAAAK--GDFPSLRLLMGH----HPEGVNAQTKNG--ATPLYLACQEGHLEVTQ 189

Query:   100 WLLRYGGK--LVPDKFGKSPINDAAENQQMEVRDQGV---DPNL--KDGDGATPLHFAAS 152
             +L++  G         G +P++ AA+     V    V   D +L  +D DGAT +HFAAS
Sbjct:   190 YLVQECGADPHASAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAAS 249

Query:   153 RGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
             RGHA  + WLL +GG++  D +G +P++DAAEN ++E
Sbjct:   250 RGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELE 286

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|I3LT50 I3LT50 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 45/123 (36%), Positives = 68/123 (55%)

Query:    78 KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD----QG 133
             +D DGAT +HFAASRGHA  + WLL +GG++  D +G +P++DAAEN ++E        G
Sbjct:   236 QDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNG 295

Query:   134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAAENQQMEVST 192
              + +++D DG T    +   GH+ C R+L       V  +   + P  D  E +Q +   
Sbjct:   296 AELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADL-ETKQPDSGM 354

Query:   193 VSP 195
              SP
Sbjct:   355 SSP 357

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P3M2 ESPN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 56/157 (35%), Positives = 84/157 (53%)

Query:    40 GTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVR 99
             G LP ++  AK  G         G       +GV+   K+G  ATPL+ A   GH +  +
Sbjct:   138 GALPIHYAAAK--GDFPSLRLLMGH----HPEGVNAQTKNG--ATPLYLACQEGHLEVTQ 189

Query:   100 WLLRYGGK--LVPDKFGKSPINDAAENQQMEVRDQGV---DPNL--KDGDGATPLHFAAS 152
             +L++  G         G +P++ AA+     V    V   D +L  +D DGAT +HFAAS
Sbjct:   190 YLVQECGADPHASAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAAS 249

Query:   153 RGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
             RGHA  + WLL +GG++  D +G +P++DAAEN ++E
Sbjct:   250 RGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELE 286

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|B1AK53 ESPN "Espin" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 5.9e-14, P = 5.9e-14
 Identities = 48/126 (38%), Positives = 75/126 (59%)

Query:    71 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF--GKSPINDAAENQQME 128
             +GV+   K+G  ATPL+ A   GH +  ++L++  G     +   G +P++ AA+     
Sbjct:   163 EGVNAQTKNG--ATPLYLACQEGHLEVTQYLVQECGADPHARAHDGMTPLHAAAQMGHSP 220

Query:   129 VRDQGV---DPNL--KDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAA 183
             V    V   D +L  +D DGAT +HFAASRGH   + WLL +GG++  D +G +P++DAA
Sbjct:   221 VIVWLVSCTDVSLSEQDKDGATAMHFAASRGHTKVLSWLLLHGGEISADLWGGTPLHDAA 280

Query:   184 ENQQME 189
             EN ++E
Sbjct:   281 ENGELE 286

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030046 "parallel actin filament bundle assembly" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051494 "negative regulation of cytoskeleton organization" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0031941 "filamentous actin" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0017124 "SH3 domain binding" evidence=ISS

GO:0005903 "brush border" evidence=ISS

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/123 (35%), Positives = 68/123 (55%)

Query:    72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
             G DPN  +    TPLH+A+S+G +D V  LL +G K   D  G +PI+ A+ N  +   +
Sbjct:   103 GADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPIHRASSNGSVATVE 162

Query:   132 Q---G-VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 186
             +   G  + N  + +G TPLH AA   H D V  LL++G    + +K  K+PI D + +Q
Sbjct:   163 RLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPI-DMSSSQ 221

Query:   187 QME 189
              ++
Sbjct:   222 TIK 224

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q6DCL5 hace1 "E3 ubiquitin-protein ligase HACE1" [Xenopus laevis (taxid:8355)]

 Score = 181 (68.8 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
 Identities = 48/157 (30%), Positives = 81/157 (51%)

Query:    32 CLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGES---TKVRDQGVDPNLKDGDGATPLHF 88
             CL LL++ G  P+Y + +     LH    R G+    +K+ +   D N+ + +G T +H+
Sbjct:    80 CLVLLLKRGADPNYQDISGCT-PLH-LAARNGQKKCMSKLLEYNADVNICNNEGLTAIHW 137

Query:    89 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDG 143
              A  G  + +  L+++   + V D  G++ ++ A +N        + D G D N  +  G
Sbjct:   138 LAVNGRTELLHDLVQHVTNVDVEDAMGQTALHVACQNGHKTTVLCLLDSGADINRPNVSG 197

Query:   144 ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 180
             ATPL+FA S G  D  + LL  G K +PDK G +P++
Sbjct:   198 ATPLYFACSHGQRDTAQILLLRGAKYLPDKNGVTPLD 234

GO:0000139 "Golgi membrane" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0030334 "regulation of cell migration" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-29
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (264), Expect = 2e-29
 Identities = 52/121 (42%), Positives = 77/121 (63%), Gaps = 6/121 (4%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME-VR--- 130
           N +D DG TPLH AAS GH + V+ LL  G  +   D  G++P++ AA+N  +E V+   
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
           ++G D N +D DG TPLH AA  G+ D V+ LL++G  +   DK G++P++ AA+N  +E
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 190 V 190
           V
Sbjct: 121 V 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.6 bits (197), Expect = 9e-20
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 86  LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVDPNLKD 140
           LH AA  G+ + V+ LL  G  + + D    + ++ AA N  +E+     + G D N KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 141 GDGATPLHFAASRGHADCVRWLLRYG 166
            DG T LH AA  G+ + V+ LL +G
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 43/141 (30%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGESTKVR---DQGVDPNLKDGDG 82
             + LL+++G   +  +         G T      + G    V+   ++G D N +D DG
Sbjct: 21  EVVKLLLENGADVNAKDN-------DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 83  ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
            TPLH AA  G+ D V+ LL++G                             D N +D D
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHG----------------------------ADVNARDKD 105

Query: 143 GATPLHFAASRGHADCVRWLL 163
           G TPLH AA  GH + V+ LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 17/170 (10%)

Query: 21  GSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDPNL 77
             +      S    LL           +      LH     KG+   V+     G D N 
Sbjct: 43  LELALLPAASLSELLLKLIVDRHLAARDLDGRLPLH-SAASKGDDKIVKLLLASGADVNA 101

Query: 78  KDGDGATPLHFAASRGH-----ADCVRWLLRYGGKL----VPDKFGKSPINDAAENQQME 128
           KD DG TPLH AA  G+      +  + LL  G  L    + D+ G +P++ AA N   +
Sbjct: 102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD 161

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF 174
           +     + G DPN ++  G T L  AA  G  + V+ LL  G  L   KF
Sbjct: 162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 60.3 bits (147), Expect = 7e-13
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 28/80 (35%)

Query: 84  TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
           T LH AA  G  + V++LL                            ++GVD N  D DG
Sbjct: 3   TALHKAAISGRLELVKYLL----------------------------EKGVDINRTDEDG 34

Query: 144 ATPLHFAASRGHADCVRWLL 163
            T LH AA  G+ + ++ LL
Sbjct: 35  NTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           D G+D N+KD +  T LH+A  +G  + ++ L  YG  + + D  G  PI+ A ++   +
Sbjct: 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFD 171

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
           +     ++G   N+KD +G +PLH AA  G   C++ L+ +G  +    K G +P+++A
Sbjct: 172 IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 40/164 (24%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA--------- 121
            +DP++ D  G TPLH AAS+G+ DCV  LL++   + + D  G + + +A         
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607

Query: 122 --------AENQQM------------------EVRDQGVDPNLKDGDGATPLHFAASRGH 155
                     +                     E+  QG++ + +D  GAT L  A +  H
Sbjct: 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667

Query: 156 ADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVSTVSP 195
            D VR L+  G  +      D F  + + +  + +++  S    
Sbjct: 668 VDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIV 711

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLH 87
             + LL++ G   +  +       LH    R G    V+   + G D N KD DG T LH
Sbjct: 11  ELVKLLLEKGADVNLGDTDTA---LH-LAARNGNLEIVKLLLEHGADVNAKDKDGNTALH 66

Query: 88  FAASRGHADCVRWLLRYG 105
            AA  G+ + V+ LL +G
Sbjct: 67  LAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 28/162 (17%)

Query: 33  LSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV----RDQGVDPNLKDGDGATPLHF 88
           + LL+++G   +  +   +   L     +K  S  +     D G + N+K+ DG   LH 
Sbjct: 89  VKLLLEYGANVNAPDNNGIT-PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147

Query: 89  AASRGHADC------------------VRWLLRYGGKL-VPDKFGKSPINDAAENQQME- 128
                  D                   V +LL YG  + + D +G +P++ A  N   E 
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207

Query: 129 VR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
           V+   D G +PNL +  G TPLH A    + +  + LL  G 
Sbjct: 208 VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 28/78 (35%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
           +D N  DG+G TPLH AA  G  + V+WLL+                             
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKP---------------------------- 38

Query: 133 GVDPNLKDGDGATPLHFA 150
           GVD NL+D DG T L  A
Sbjct: 39  GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 72  GVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           G D N+KD   G T LH+A           LL YG  + +PDK   SP++ A ++    +
Sbjct: 157 GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI 216

Query: 130 R----DQGVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYG 166
                + G   + +D  G TPLH +       D ++ LL +G
Sbjct: 217 VHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG 258

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 40/126 (31%), Positives = 48/126 (38%), Gaps = 38/126 (30%)

Query: 63  GESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN 119
           G++   R     G DPN +D DG TPLH A + GH   VR LL +G              
Sbjct: 93  GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA------------- 139

Query: 120 DAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-------GGKLVPD 172
                          DP L D DG TPL  A   G  + V+ L R+       G    PD
Sbjct: 140 ---------------DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPD 184

Query: 173 KFGKSP 178
            F   P
Sbjct: 185 SFTGKP 190

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 22  SMGDRLMLSNCLSLLVQHGTLPDYHE---EAKLHGKLHGCTCRKGESTKVRDQGVDPNLK 78
            +  +   S  + LL++HG +PD      E++LH  +     +  E      +  D ++ 
Sbjct: 40  KLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD-DVF 98

Query: 79  DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQG 133
             DG TPLH A      D ++ L+  G    +P+    SP++ A     ++    + D  
Sbjct: 99  YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158

Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSP----INDAAENQQME 189
              +++D  G TPL  A ++G     + LL  G     D FGK+     +  A EN +++
Sbjct: 159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN--IDYFGKNGCVAALCYAIENNKID 216

Query: 190 VSTVSPVVRR 199
           +  V   ++R
Sbjct: 217 I--VRLFIKR 224

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
           +D N  DG+G TPLH AA  G  + V+WLL+ G  L + D  G + +
Sbjct: 7   IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 102
           ++GVD N  D DG T LH AA  G+ + ++ LL
Sbjct: 22  EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           G DPN +D DG TPLH A + GH   VR LL +G    + DK GK+P+  A EN   EV
Sbjct: 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 72  GVDPNLKDGDGATPLHFAA--SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQM 127
           G DP   D  G TPLH  A  S      V  LL  G  +   +++G++P++ AA  N   
Sbjct: 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271

Query: 128 EVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 164
             R     G D N    DG TPL       +   VR  L 
Sbjct: 272 ACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYG 105
           DG TPLH AA  GH + V+ LL  G
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.7 bits (104), Expect = 8e-07
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 142 DGATPLHFAASRGHADCVRWLLRYG 166
           DG TPLH AA  GH + V+ LL  G
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA--ENQQ 126
           ++G   N+KD +G +PLH AA  G   C++ L+ +G  +    K G +P+++A       
Sbjct: 178 EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA 237

Query: 127 MEVRDQGVDPNLKDGDGATPLHFAASRG-HADCVRWLLRYGGKL-VPDKFGKSPINDAAE 184
           +E+       N +D DG+TPLH A +     D +  LL +   + + D  G++PI+ A  
Sbjct: 238 IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA-- 295

Query: 185 NQQMEVSTVSPVVRRLL 201
               +     PV++ ++
Sbjct: 296 ---FKYINKDPVIKDII 309

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 37/163 (22%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHA-----DCVRWLLRYGGKL-VPDKFGKSPINDAAE 123
           D G D N    + +TPLH+ ++  +      + V+ LL YG  +  PD  G +P+  A  
Sbjct: 56  DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS 115

Query: 124 N--QQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADC------------------V 159
                  +     D G + N+K+ DG   LH        D                   V
Sbjct: 116 KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175

Query: 160 RWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL 201
            +LL YG  + + D +G +P++ A  N   E       V+ LL
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPE------FVKYLL 212

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 67  KVRDQGVDPNLKDGDGATPLHFAASRGH-ADCVRWLLRYGGKL-VPDKFGKSPINDAA-- 122
           K+ ++G D N K+  G TPL+  A  G+  + +R L+  G  +   D+   +P++ A+  
Sbjct: 292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351

Query: 123 ---ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
              ++  + + + G + N +D    TP+H+AA R +   +  LL YG  +
Sbjct: 352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 38/149 (25%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLR--------YGGKLVPDKF-------GKS 116
           G + N  D    TPLH      +   ++ ++R        Y    + D F        K 
Sbjct: 60  GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKI 119

Query: 117 PINDAAENQQ----MEVRDQ-----------------GVDPNLKDGD-GATPLHFAASRG 154
            + +  +N Q    + +  +                 G D N+KD   G T LH+A    
Sbjct: 120 ILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENK 179

Query: 155 HADCVRWLLRYGGKL-VPDKFGKSPINDA 182
                  LL YG  + +PDK   SP++ A
Sbjct: 180 DQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKL 108
           DG TPLH AA  G+ + V+ LL  G  +
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL 169
           DG TPLH AA  G+ + V+ LL  G  +
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 38/124 (30%)

Query: 9   AVSGDVKCSSQAGSMGDRLMLS-----NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG 63
           A SGD        ++G R++L+     NC           DY     LH       C  G
Sbjct: 90  AASGD--------AVGARILLTGGADPNCR----------DYDGRTPLH-----IACANG 126

Query: 64  ESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-------GGKLVPDKF 113
               VR   + G DP L D DG TPL  A   G  + V+ L R+       G    PD F
Sbjct: 127 HVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSF 186

Query: 114 GKSP 117
              P
Sbjct: 187 TGKP 190

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADC---VRWLLRYGGKL-VPDKFGKSPINDAAENQQ 126
            G D N +   G TPLH             VR LL  G  +  P++ G +P++    N  
Sbjct: 36  AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT 95

Query: 127 ME--VR---DQGVDPNLKDGDGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSP 178
               ++     G D N KD  G TPLH   S    +   +R LLR G  +   D +G +P
Sbjct: 96  TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP 155

Query: 179 I 179
           +
Sbjct: 156 L 156

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG---KSPINDAAENQQ 126
           D G++PN +  DG +P+  A     ++ ++ L+++G   +PD      +S ++DA E   
Sbjct: 23  DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA--IPDVKYPDIESELHDAVEEGD 80

Query: 127 MEVRDQGVDPN--LKD---GDGATPLHFAASRGHADCVRWLLRYG 166
           ++  ++ +D      D    DG TPLH A      D ++ L+  G
Sbjct: 81  VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG 125

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 55  LHGCTCRKGESTKVR------DQGVDPNLKDGDGATPLH-FAASRG-HADCVRWLLRYGG 106
           LH      G +   +       +G D N  D  G TPL     SR  + + +R L+  G 
Sbjct: 121 LH--VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA 178

Query: 107 KLVPDKFGKSPINDAAENQQM-----------EVRDQGVDPNLKDGDGATPLHFAA--SR 153
               D +       +  +  +           E+   G DP   D  G TPLH  A  S 
Sbjct: 179 ----DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS 234

Query: 154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
                V  LL  G  +   +++G++P++ AA
Sbjct: 235 CKRSLVLPLLIAGISINARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDA--AENQQM 127
           G + N +D    TP+H+AA R +   +  LL YG  +  +  K G + ++ A    N  M
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALCGTNPYM 423

Query: 128 EVR---DQGVDPNLKDGDGATPLHFAASRG-HADCVRWLLRYGG 167
            V+   D+G + N K+ D +TPLH+A  +    D +  LL  G 
Sbjct: 424 SVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA 467

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 53/182 (29%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHA--DCVRWLLRYGGKL-------------------- 108
            G DPN  D    TPL++ +       + +  L++YG K+                    
Sbjct: 94  HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSE 153

Query: 109 --------------VPDKFGKSPIND--AAENQQME----VRDQGVDPNLKDGDGATPLH 148
                         + DKFGK+ I+    ++N +      +   G+ P+  D DG TPLH
Sbjct: 154 RVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH 213

Query: 149 FAASR--GHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSP--VVRRLLTIQ 204
              S+   + D +  LL        +KFG SP+        + + T+SP  ++ +LL+  
Sbjct: 214 IVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLT-------LLIKTLSPAHLINKLLSTS 266

Query: 205 KV 206
            V
Sbjct: 267 NV 268

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           T LH AA  G  + V++LL  G  +   D+ G + ++ AAEN  +EV
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYG 105
           DG TPLH AA  G+ + V+ LL +G
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 142 DGATPLHFAASRGHADCVRWLLRYG 166
           DG TPLH AA  G+ + V+ LL +G
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 147 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL 201
           LH AA  G+ + V+ LL  G  + + D    + ++ AA N  +E      +V+ LL
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLE------IVKLLL 48

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 125 QQMEVR------DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
           QQ E+       + G D N KD    TP+H+AA RG+A  V  LL YG 
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA 202

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
           PI    ++    + D G+D N+KD +  T LH+A  +G  + ++ L  YG  + + D  G
Sbjct: 98  PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG 157

Query: 176 KSPINDAAENQQMEV 190
             PI+ A ++   ++
Sbjct: 158 CYPIHIAIKHNFFDI 172

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 106
           + G D N KD    TP+H+AA RG+A  V  LL YG 
Sbjct: 166 EGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA 202

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 12/144 (8%)

Query: 72  GVDPNLKDGDGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           G D N KD  G TPLH   S    +   +R LLR G  +   D +G +P+    +++   
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN 166

Query: 129 VR------DQGVDPNLKDGDGATPLH-FAAS-RGHADCVRWLLRYG-GKLVPDKFGKSPI 179
           V       D G D    D    + LH    S +  A  VR L+R G      D  G +P+
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 180 NDAAENQQMEVSTVSPVVRRLLTI 203
           +  A     + S V P++   ++I
Sbjct: 227 HSMATGSSCKRSLVLPLLIAGISI 250

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 19/145 (13%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGH-ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 127
           + G D N  +  G TPLH         D ++ L++ G  +   DK G++P++        
Sbjct: 71  EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG--F 128

Query: 128 EVR--------DQGVDPNLKDGDGATPLH-FAASRG-HADCVRWLLRYGGKLVPDKFGKS 177
            +          +G D N  D  G TPL     SR  + + +R L+  G     D +   
Sbjct: 129 NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA----DVYAVD 184

Query: 178 PINDAAENQQMEVSTVSP-VVRRLL 201
               +  +  ++       +VR L+
Sbjct: 185 DRFRSLLHHHLQSFKPRARIVRELI 209

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.98
KOG4412|consensus	226		99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509|consensus	600		99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG0509|consensus	600		99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
KOG0508|consensus	615		99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0510|consensus	929		99.95
KOG0510|consensus	929		99.95
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG4177|consensus	1143		99.93
KOG4177|consensus	1143		99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG0508|consensus	615		99.9
PHA02730	672	ankyrin-like protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.85
KOG0505|consensus	527		99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
KOG0502|consensus	296		99.85
PHA02792	631	ankyrin-like protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0507|consensus	854		99.83
KOG0502|consensus	296		99.82
PHA02741	169	hypothetical protein; Provisional	99.81
KOG0514|consensus	452		99.81
KOG0514|consensus	452		99.8
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0512|consensus	228		99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0195|consensus	448		99.75
KOG0505|consensus	527		99.75
KOG0507|consensus	854		99.75
KOG4369|consensus	2131		99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG0512|consensus	228		99.68
KOG4369|consensus	2131		99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG0195|consensus	448		99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
KOG3676|consensus	782		99.62
KOG3676|consensus	782		99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG4214|consensus	117		99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
KOG0515|consensus	752		99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.37
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
KOG4214|consensus	117		99.36
KOG0515|consensus	752		99.32
KOG1710|consensus	396		99.26
KOG1710|consensus	396		99.22
KOG0818|consensus	669		99.05
KOG0783|consensus	1267		98.85
KOG0506|consensus	622		98.76
PF13606	30	Ank_3: Ankyrin repeat	98.75
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG0818|consensus	669		98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
KOG0782|consensus	1004		98.56
KOG0522|consensus	560		98.5
KOG0705|consensus	749		98.42
KOG0783|consensus	1267		98.4
KOG0506|consensus	622		98.3
KOG0705|consensus	749		98.25
KOG0520|consensus	975		98.13
KOG2384|consensus	223		98.12
KOG2384|consensus	223		98.08
KOG0522|consensus	560		98.04
KOG3609|consensus	822		97.93
KOG3609|consensus	822		97.88
KOG0782|consensus	1004		97.87
KOG0521|consensus	785		97.86
KOG0511|consensus	516		97.82
KOG0511|consensus	516		97.78
KOG0521|consensus	785		97.66
KOG0520|consensus	975		97.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.95
KOG2505|consensus	591		96.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
KOG2505|consensus	591		96.68
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.31
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.57

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-33  Score=205.50  Aligned_cols=180  Identities=20%  Similarity=0.256  Sum_probs=152.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+.+|+.++                +++|+++|++++..+  +.+|++.|+..++..+.. |++.|++++.+|.
T Consensus        31 ~TpLh~Aa~~g~~ei----------------v~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~   92 (284)
T PHA02791         31 HSALYYAIADNNVRL----------------VCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD   92 (284)
T ss_pred             CcHHHHHHHcCCHHH----------------HHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence            489999999999875                788888888887754  578999999988877776 6789999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCC-CcHHHHHHhcChHHHh----hcCCCCCCCC-CCCCcHHHHHHHC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQQMEVR----DQGVDPNLKD-GDGATPLHFAASR  153 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g-~~~l~~a~~~~~~~l~----~~~~~~~~~~-~~g~t~l~~a~~~  153 (207)
                      .|.||||+|+..++.+++++|++.|+++ ..+..| .||||+|+..++.+++    ..+.+.  .+ ..|.||||+|+..
T Consensus        93 ~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791         93 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKN  170 (284)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHc
Confidence            9999999999999999999999999988 677777 4899999999988743    443322  23 2588999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCH-HHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSP-INDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~-l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+.+++++|+++|+++ .++..|.|| ||+|+..|+.++      ++.|++.|+++
T Consensus       171 g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~------v~lLl~~Ga~i  220 (284)
T PHA02791        171 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEM------LQALFKYDINI  220 (284)
T ss_pred             CCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHH------HHHHHHCCCCC
Confidence            9999999999999999 678888877 999999999998      77777777764

>KOG4412|consensus

Probab=100.00  E-value=7.4e-33  Score=183.35  Aligned_cols=167  Identities=30%  Similarity=0.410  Sum_probs=145.9

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhc-CCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQ-GVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~-g~~~~~~~   79 (207)
                      .||||+||.-|+.+++++|++               +-+..+|-+|..|++|++.||..++.+++. |+.+ |+|+|...
T Consensus        39 Rt~LHwa~S~g~~eiv~fLls---------------q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t  103 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLS---------------QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT  103 (226)
T ss_pred             CceeeeeeecCchhHHHHHHh---------------cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec
Confidence            389999999999987444443               356788889999999999999999888877 7766 99999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      ..|.|+||+|+..|.+++.++|++.|+.+ .+|..|.||||-|+..|..+    ++..++.+|.+|..|+||||.|.--|
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEG  183 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhcc
Confidence            99999999999999999999999999988 99999999999999999887    45688999999999999999998888


Q ss_pred             CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHH
Q psy14140        155 HADCVRWLLRYGGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       155 ~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~  184 (207)
                      +.+....|++.|++. ..|+.| ||+..++-
T Consensus       184 ~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  184 HPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            999999999999999 677777 99876654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-32  Score=216.04  Aligned_cols=199  Identities=23%  Similarity=0.395  Sum_probs=132.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchh----------------------hHHHHHHHHHHcCCCCCchhhcccchhhhhh-
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRL----------------------MLSNCLSLLVQHGTLPDYHEEAKLHGKLHGC-   58 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~----------------------~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~-   58 (207)
                      .||||+|+..|+.++|+.+++.+...                      ...+++++|+++|++++..+..+.+|++.|+ 
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~  115 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS  115 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh
Confidence            37788888888888888777655431                      1135777777777777777777777777777 


Q ss_pred             -hccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----H
Q psy14140         59 -TCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRG--HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----V  129 (207)
Q Consensus        59 -~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l  129 (207)
                       ..++..+.. |++.|++++..+..|.||||+|+..+  +.+++++|++.|+++ ..+..|.||||+|+..++.+    +
T Consensus       116 ~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~L  195 (480)
T PHA03100        116 KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFL  195 (480)
T ss_pred             cccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHH
Confidence             666666555 56777777777777777777777777  777777777777777 66667777777777777655    3


Q ss_pred             hhcCCCCCCCCCCC------CcHHHHHHHCCC--HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHH
Q psy14140        130 RDQGVDPNLKDGDG------ATPLHFAASRGH--ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRL  200 (207)
Q Consensus       130 ~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~l  200 (207)
                      ++.|++++..+..|      .||+|.|+..++  .+++++|++.|+++ .++..|.||||+|+..++.++      ++.|
T Consensus       196 l~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i------v~~L  269 (480)
T PHA03100        196 LDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF------VKYL  269 (480)
T ss_pred             HHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH------HHHH
Confidence            45566666555555      556666666665  66666666666665 455556666666666655554      4445


Q ss_pred             hhcccC
Q psy14140        201 LTIQKV  206 (207)
Q Consensus       201 l~~~~~  206 (207)
                      ++.|++
T Consensus       270 l~~gad  275 (480)
T PHA03100        270 LDLGAN  275 (480)
T ss_pred             HHcCCC
Confidence            555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-32  Score=212.24  Aligned_cols=200  Identities=22%  Similarity=0.278  Sum_probs=170.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      +++||.|+..|+.++++.+++.+....                 ..+++++|+++|++++..+..+.+|++.|+..++..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            688999999999999999988765421                 137899999999999888888888999999888877


Q ss_pred             hHH-HHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCC
Q psy14140         65 STK-VRDQGVDPN-LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPN  137 (207)
Q Consensus        65 ~~~-ll~~g~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~  137 (207)
                      +.. |++.|.+.+ ..+..|.||||+|+..++.+++++|++.|+++ .++..|.||||+|+..++.+    +++.|++++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            766 678887664 45677899999999999999999999999998 88889999999999998877    567899999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCC-CCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g-~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..|..|.||||+|+..|+.+++++|++.|+++ ..+..| .||+++|+..++.++      ++.|++.|++|
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i------v~~Ll~~gad~  228 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI------VRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH------HHHHHHCCcCc
Confidence            99999999999999999999999999999999 455555 588888999998887      78888888875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.1e-31  Score=212.08  Aligned_cols=162  Identities=21%  Similarity=0.314  Sum_probs=127.8

Q ss_pred             HHHHHHHcCCCCCchhhc-ccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         32 CLSLLVQHGTLPDYHEEA-KLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        32 ~v~~ll~~g~~~~~~~~~-~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      ++++|+++|++++..+.. |.+|++.|+..++..+.. |++.|++++..|..|.||||+|+..++.+++++|++.|+++ 
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            778888888888888877 888888888888777666 66888888888888888888888888888888888888888 


Q ss_pred             CCCCCCCcHHHHHHhc-ChHH----HhhcCCCCCCCCC-CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH
Q psy14140        109 VPDKFGKSPINDAAEN-QQME----VRDQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~-~~~~----l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      .++..|.||||+|+.. +..+    +++.|++++..+. .|.||||.|  .++.+++++|+++|+++ ..+..|.|||++
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~  306 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS  306 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            8888888888888864 4444    5678888887775 688888888  45678888888888888 578888888888


Q ss_pred             HHHcC-CcceeehHH
Q psy14140        182 AAENQ-QMEVSTVSP  195 (207)
Q Consensus       182 a~~~~-~~~~~~~l~  195 (207)
                      |+..+ ..++++++.
T Consensus       307 A~~~~~~~~~~~~li  321 (477)
T PHA02878        307 AVKQYLCINIGRILI  321 (477)
T ss_pred             HHHHcCccchHHHHH
Confidence            88754 334544443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.7e-31  Score=211.96  Aligned_cols=199  Identities=26%  Similarity=0.360  Sum_probs=179.1

Q ss_pred             CCccee-----ehccCChhHHHHHhhccchh-------------------hHHHHHHHHHHcCCCCCchhhcccchhhhh
Q psy14140          2 AHPLFI-----RAVSGDVKCSSQAGSMGDRL-------------------MLSNCLSLLVQHGTLPDYHEEAKLHGKLHG   57 (207)
Q Consensus         2 ~tpl~~-----Aa~~g~~~~~~~~~~~~~~~-------------------~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a   57 (207)
                      .||||+     |+..|+.++++.+++.+...                   ...+++++|+++|++++..+..+.+|++.|
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A  148 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY  148 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            489999     99999999999999986541                   235789999999999999999999999999


Q ss_pred             hhcc--CCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCC------CcHHHHHHhcCh-
Q psy14140         58 CTCR--KGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG------KSPINDAAENQQ-  126 (207)
Q Consensus        58 ~~~~--~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g------~~~l~~a~~~~~-  126 (207)
                      +..+  +..+.. |++.|++++..+..|.||||+|+..|+.+++++|++.|+++ ..+..|      .||+|.|+..+. 
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~  228 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEI  228 (480)
T ss_pred             HHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcC
Confidence            9988  666665 78999999999999999999999999999999999999999 777788      899999999998 


Q ss_pred             -HH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHH
Q psy14140        127 -ME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRL  200 (207)
Q Consensus       127 -~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~l  200 (207)
                       .+    +++.|++++..|..|.||||.|+..++.+++++|++.|+++ .++..|.||+++|+..++.++      ++.|
T Consensus       229 ~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~i------v~~L  302 (480)
T PHA03100        229 TLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEI------FKLL  302 (480)
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHH------HHHH
Confidence             66    56899999999999999999999999999999999999999 689999999999999999987      5666


Q ss_pred             hhcccC
Q psy14140        201 LTIQKV  206 (207)
Q Consensus       201 l~~~~~  206 (207)
                      ++.|++
T Consensus       303 l~~g~~  308 (480)
T PHA03100        303 LNNGPS  308 (480)
T ss_pred             HhcCCC
Confidence            666554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=6.7e-31  Score=206.97  Aligned_cols=156  Identities=28%  Similarity=0.376  Sum_probs=107.3

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      ++++.+++.|++++..+..+.+|++.|+..++..++. |++.|++++.+|..|.||||+|+..++.+++++|++.|+++ 
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence            3455555556667777777788888888777766655 66788888888888888888888888888888888888777 


Q ss_pred             CCCCCCCcHHHHHHhcChHH----HhhcCCC-------------------------------CCCCCCCCCcHHHHHHHC
Q psy14140        109 VPDKFGKSPINDAAENQQME----VRDQGVD-------------------------------PNLKDGDGATPLHFAASR  153 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~----l~~~~~~-------------------------------~~~~~~~g~t~l~~a~~~  153 (207)
                      ..+..|.||||+|+..++.+    +++.|.+                               ++..|..|.||||+|+..
T Consensus       185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhc
Confidence            77777888888888777665    3344444                               444555566666666554


Q ss_pred             C-CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        154 G-HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       154 ~-~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      + +.+++++|+++|+++ .++..|+|||++|++.+
T Consensus       265 ~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        265 PCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            3 456666666666666 45666666666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=5.2e-31  Score=206.57  Aligned_cols=184  Identities=17%  Similarity=0.243  Sum_probs=133.1

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhH-----------------HHHHHHHHHcCCCCC-chhhcccchhhhhhhccCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLML-----------------SNCLSLLVQHGTLPD-YHEEAKLHGKLHGCTCRKG   63 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~-----------------~~~v~~ll~~g~~~~-~~~~~~~~~~~~a~~~~~~   63 (207)
                      .||||+|+..|+.++++.+++.+.....                 .++++.|+++|...+ ..+..+.+|+++|+..++.
T Consensus        36 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~  115 (413)
T PHA02875         36 ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL  115 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH
Confidence            4778888888888888877776543211                 267777887776553 3445667777777777776


Q ss_pred             chHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCC
Q psy14140         64 ESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPN  137 (207)
Q Consensus        64 ~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~  137 (207)
                      ++.. |++.|++++.++..|.||||+|+..|+.+++++|++.|+++ .++..|.||||+|+..++.+    +++.|++++
T Consensus       116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            6665 66778888887777888888888888888888888887777 77777888888888777766    456777777


Q ss_pred             CCCCCCC-cHHHHHHHCCCHHHHHHHHHhCCCc-c---CCCCCCCHHHHHHHc
Q psy14140        138 LKDGDGA-TPLHFAASRGHADCVRWLLRYGGKL-V---PDKFGKSPINDAAEN  185 (207)
Q Consensus       138 ~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~-~---~~~~g~t~l~~a~~~  185 (207)
                      ..+..|. |++++|+..++.+++++|+++|+++ .   .+..+.||++..+..
T Consensus       196 ~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        196 YFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            7776664 6777788888888888888888777 2   355677787766543

>KOG4412|consensus

Probab=99.97  E-value=1.2e-31  Score=177.58  Aligned_cols=162  Identities=28%  Similarity=0.432  Sum_probs=143.8

Q ss_pred             HHHHHHcCC-CCCchhh-cccchhhhhhhccCCchHH-HH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHh-CCC
Q psy14140         33 LSLLVQHGT-LPDYHEE-AKLHGKLHGCTCRKGESTK-VR-DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGK  107 (207)
Q Consensus        33 v~~ll~~g~-~~~~~~~-~~~~~~~~a~~~~~~~~~~-ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~  107 (207)
                      ++.+++..- ..+.++. .+.+|++|||..+..+++. |+ +.++.+|.+|..|+||||+|++.|+.++++.|+.+ +++
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad   98 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD   98 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC
Confidence            444444443 5577776 8899999999999988887 44 78999999999999999999999999999999999 888


Q ss_pred             c-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH
Q psy14140        108 L-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       108 ~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      + ..+..|.|+||+|+..++.+    +++.|+.++.+|..|.||||.|+..|..+++++|+..|+.+ ..|+.|+||||.
T Consensus        99 vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~  178 (226)
T KOG4412|consen   99 VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHH  178 (226)
T ss_pred             cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHH
Confidence            8 99999999999999999987    57899999999999999999999999999999999999988 699999999999


Q ss_pred             HHHcCCcceeehH
Q psy14140        182 AAENQQMEVSTVS  194 (207)
Q Consensus       182 a~~~~~~~~~~~l  194 (207)
                      |.-.|+.++..+|
T Consensus       179 al~e~~~d~a~lL  191 (226)
T KOG4412|consen  179 ALAEGHPDVAVLL  191 (226)
T ss_pred             HHhccCchHHHHH
Confidence            9888888874433

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.4e-31  Score=208.97  Aligned_cols=191  Identities=20%  Similarity=0.255  Sum_probs=126.8

Q ss_pred             CcceeehccC-ChhHHHHHhhccchhh-------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC
Q psy14140          3 HPLFIRAVSG-DVKCSSQAGSMGDRLM-------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK   62 (207)
Q Consensus         3 tpl~~Aa~~g-~~~~~~~~~~~~~~~~-------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~   62 (207)
                      ||||+|+.+| ..++++.+++.+....                   ..+++++|+++|++++..+..+.+|++.++..++
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            5555555555 3555555555444311                   1245555555555555555555555555444443


Q ss_pred             Cc--hHH-HHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH------HHh
Q psy14140         63 GE--STK-VRDQGVDPNLKDGDGATPLHFAASR--GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM------EVR  130 (207)
Q Consensus        63 ~~--~~~-ll~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~------~l~  130 (207)
                      ..  +.. |++.|++++..|..|.||||+++..  ++.++++.|++.|+++ .+|..|.||||+|+..+..      .++
T Consensus       165 ~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll  244 (471)
T PHA03095        165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL  244 (471)
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence            22  222 4455666655555666666665543  4556666666666666 6677777777777766642      156


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       131 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                      +.|++++..|..|.||||+|+..|+.+++++|++.|+++ ..+..|+|||++|+..++.++++.
T Consensus       245 ~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~  308 (471)
T PHA03095        245 IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRA  308 (471)
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHH
Confidence            788899999999999999999999999999999999999 688889999999999998887443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=206.95  Aligned_cols=195  Identities=22%  Similarity=0.304  Sum_probs=154.8

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC---
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK---   62 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~---   62 (207)
                      ||||+||..|+.++|+.|++.+....                 ..++++.|++.+...+.  ..+.+++..|+..++   
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHH
Confidence            78888888888888888888764411                 13567777776654443  122333333332221   


Q ss_pred             ------------------------------CchHH-HHhcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHhCCCc-C
Q psy14140         63 ------------------------------GESTK-VRDQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKL-V  109 (207)
Q Consensus        63 ------------------------------~~~~~-ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~  109 (207)
                                                    ..+.. |++.|++++..+.. |.||||+|+..|+.+++++|++.|+++ .
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                          01333 77999999999998 999999999999999999999999999 8


Q ss_pred             CCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHC-CCHHHHHHHHHhCCCc-cCC-CCCCCHHHHH
Q psy14140        110 PDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYGGKL-VPD-KFGKSPINDA  182 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~-~~~-~~g~t~l~~a  182 (207)
                      .+..|.||||.|+..++.+    +++.|++++..|..|.||||+|+.. ++.+++++|+++|+++ .++ ..|.||||+|
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            9999999999999999887    5689999999999999999999975 7899999999999999 455 4799999999


Q ss_pred             HHcCCcceeehHHHHHHHhhcccCC
Q psy14140        183 AENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       183 ~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                        .++.++      ++.|++.|++|
T Consensus       277 --~~~~~~------v~~Ll~~gadi  293 (477)
T PHA02878        277 --IKSERK------LKLLLEYGADI  293 (477)
T ss_pred             --ccCHHH------HHHHHHCCCCC
Confidence              344444      78889998875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=205.91  Aligned_cols=200  Identities=20%  Similarity=0.218  Sum_probs=170.9

Q ss_pred             CCcceeehccC---ChhHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhc
Q psy14140          2 AHPLFIRAVSG---DVKCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTC   60 (207)
Q Consensus         2 ~tpl~~Aa~~g---~~~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~   60 (207)
                      .||||+|+..|   +.++++.+++.+....                  ..+++++|+++|++++..+..|.+|++.|+..
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~  127 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG  127 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhC
Confidence            58999999999   9999999998776632                  25789999999999999999999999998844


Q ss_pred             c--CCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcC--hHH----
Q psy14140         61 R--KGESTK-VRDQGVDPNLKDGDGATPLHFAASRG--HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ--QME----  128 (207)
Q Consensus        61 ~--~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~--~~~----  128 (207)
                      .  +..+.. |++.|++++..|..|.||||+++..+  +.+++++|++.|+++ ..+..|.||+|+++...  ...    
T Consensus       128 ~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~  207 (471)
T PHA03095        128 FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRE  207 (471)
T ss_pred             CcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHH
Confidence            3  334444 77999999999999999999988765  678999999999988 66899999999988653  332    


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHCCCH--HHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhccc
Q psy14140        129 VRDQGVDPNLKDGDGATPLHFAASRGHA--DCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQK  205 (207)
Q Consensus       129 l~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~  205 (207)
                      +++.|++++..|..|.||||+|+..++.  .+++.|++.|+++ .++..|+||||+|+..|+.++      ++.|++.|+
T Consensus       208 Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~------v~~LL~~ga  281 (471)
T PHA03095        208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA------CRRLIALGA  281 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH------HHHHHHcCC
Confidence            6789999999999999999999999864  6788899999999 688999999999999999987      778888888


Q ss_pred             CC
Q psy14140        206 VP  207 (207)
Q Consensus       206 ~p  207 (207)
                      +|
T Consensus       282 d~  283 (471)
T PHA03095        282 DI  283 (471)
T ss_pred             CC
Confidence            76

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.4e-30  Score=201.07  Aligned_cols=198  Identities=16%  Similarity=0.192  Sum_probs=157.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      .||||+|+..|+.++++.+++.+....                 ..+++++|+++|++++..+..+.+|++.|+..++..
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            489999999999999998888765421                 137889999999988888888888999888888877


Q ss_pred             hHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcC-hHH----HhhcCCCCC
Q psy14140         65 STK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ-QME----VRDQGVDPN  137 (207)
Q Consensus        65 ~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~-~~~----l~~~~~~~~  137 (207)
                      +.. |++.|++++..+..|.||||.|+..+. +.+.+|+ .+.++ .++..|.||||+|+..+ ..+    |+..|++++
T Consensus       205 iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        205 CIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS  282 (434)
T ss_pred             HHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC
Confidence            766 678888888888889999999888765 4566665 46667 88899999999999865 444    678999999


Q ss_pred             CCCCCCCcHHHHHHHCC-CHHHHHHHHHhCCCc-cCCC-CCCCHHHHHHHcCCcceeehHHHHHHHh
Q psy14140        138 LKDGDGATPLHFAASRG-HADCVRWLLRYGGKL-VPDK-FGKSPINDAAENQQMEVSTVSPVVRRLL  201 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~g~~~-~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~ll  201 (207)
                      ..|..|.|||+.|+..+ ..++++.|+..+..+ ..+. ...+++..+....+.+..+++.....-+
T Consensus       283 ~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~~ei  349 (434)
T PHA02874        283 IKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNEEI  349 (434)
T ss_pred             CCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHHHHHHHH
Confidence            99999999999999887 778899999988776 3333 3356677777777777766666655543

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=8.7e-30  Score=200.03  Aligned_cols=161  Identities=22%  Similarity=0.342  Sum_probs=135.6

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCc--hH-HHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE--ST-KVRDQGVDPNL-KDGDGATPLHFAASRGHADCVRWLLRYGG  106 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~--~~-~ll~~g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  106 (207)
                      +++++|+++|+++|.++..+.+|+++|+..+...  +. .|++.|++++. .|..|.|||+ |+..++.+++++|++.|+
T Consensus        86 eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946         86 RIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccc
Confidence            4689999999999999999999999887765533  23 37799999995 6889999997 667789999999999999


Q ss_pred             Cc-CCCCCCCcHHHHHHhcCh--HH----HhhcCCCCCCCCCCCCcHHHHHHHCC--CHHHHHHHHHhCCCc-cCCCCCC
Q psy14140        107 KL-VPDKFGKSPINDAAENQQ--ME----VRDQGVDPNLKDGDGATPLHFAASRG--HADCVRWLLRYGGKL-VPDKFGK  176 (207)
Q Consensus       107 ~~-~~~~~g~~~l~~a~~~~~--~~----l~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~-~~~~~g~  176 (207)
                      ++ ..|..|+||||+|+..++  .+    +++.|++++..|..|.||||+|+..+  +.+++++|+. |+++ .++..|+
T Consensus       165 d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~  243 (446)
T PHA02946        165 EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGD  243 (446)
T ss_pred             cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCC
Confidence            98 899999999999876554  22    67899999999999999999999876  7889998884 8888 6899999


Q ss_pred             CHHHHHHHcCCc-ceeeh
Q psy14140        177 SPINDAAENQQM-EVSTV  193 (207)
Q Consensus       177 t~l~~a~~~~~~-~~~~~  193 (207)
                      ||||+|++.++. +++++
T Consensus       244 TpLh~A~~~~~~~~~~~~  261 (446)
T PHA02946        244 SPLTLLIKTLSPAHLINK  261 (446)
T ss_pred             CHHHHHHHhCChHHHHHH
Confidence            999999999875 55433

>KOG0509|consensus

Probab=99.97  E-value=8.2e-30  Score=197.32  Aligned_cols=175  Identities=27%  Similarity=0.425  Sum_probs=144.7

Q ss_pred             cceeehccCChhHHHHHhhccchhhHHHHHHHHHHc-CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC-C
Q psy14140          4 PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQH-GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD-G   80 (207)
Q Consensus         4 pl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~-g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~-~   80 (207)
                      .++.|++.|+++-                ++.+++. |.+++..|..+.+++++|+..++-++.+ |+++|+++|..+ .
T Consensus        47 ~~v~A~q~G~l~~----------------v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~  110 (600)
T KOG0509|consen   47 DIVKATQYGELET----------------VKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV  110 (600)
T ss_pred             hhhhHhhcchHHH----------------HHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC
Confidence            3566777777764                6666666 7888888888888889988888877766 779999999887 4


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .+.||||+|+++|+..++.+|+++|+++ .+|.+|.+|+|.|++.++.-    ++..+++++.+|.+|+|||++|+.+|+
T Consensus       111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc
Confidence            5789999999999999999999999999 88999999999999888876    456788899999999999999999988


Q ss_pred             HHHHHHHHHhCCCc-c-CCCCCCCHHHHHHHcCCcceeehH
Q psy14140        156 ADCVRWLLRYGGKL-V-PDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~-~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ...+..|+..|+.+ . .+..|.||||+|+..|+..++.++
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll  231 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLL  231 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehh
Confidence            88788888888888 3 447899999999999999887643

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=183.82  Aligned_cols=169  Identities=17%  Similarity=0.071  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy14140         29 LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK  107 (207)
Q Consensus        29 ~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  107 (207)
                      ..+++++|+++|+  +..+..+.+|++.|+..++..+.. |++.|++++..+  +.||||+|+..|+.+++++|++.|++
T Consensus        11 ~~~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gad   86 (284)
T PHA02791         11 SKQLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMD   86 (284)
T ss_pred             HHHHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            4578999999998  567889999999999999988776 779999998865  68999999999999999999999999


Q ss_pred             c-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC-cHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHH
Q psy14140        108 L-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA-TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIND  181 (207)
Q Consensus       108 ~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~  181 (207)
                      + .++..|.||||+|+..++.+    +++.|++++..+..|+ ||||.|+..|+.+++++|++++++......|.||||+
T Consensus        87 vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~  166 (284)
T PHA02791         87 DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHI  166 (284)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHH
Confidence            9 89999999999999999987    5678999999888885 8999999999999999999987655322358999999


Q ss_pred             HHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        182 AAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       182 a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+.+|+.++      ++.||+.|++|
T Consensus       167 Aa~~g~~ei------v~lLL~~gAd~  186 (284)
T PHA02791        167 TIKNGHVDM------MILLLDYMTST  186 (284)
T ss_pred             HHHcCCHHH------HHHHHHCCCCC
Confidence            999999988      77778877764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.9e-29  Score=206.78  Aligned_cols=182  Identities=23%  Similarity=0.314  Sum_probs=129.9

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhH----------------------------------------------HHHHHH
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLML----------------------------------------------SNCLSL   35 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~----------------------------------------------~~~v~~   35 (207)
                      .||||+||.+|+.++|+.|++.+.....                                              .+++++
T Consensus       179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~  258 (682)
T PHA02876        179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLL  258 (682)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHH
Confidence            3899999999999999998887643210                                              134567


Q ss_pred             HHHcCCCCCchhhcccchhhhhhhccCC-chHH-HHhcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHhCCCc-CCC
Q psy14140         36 LVQHGTLPDYHEEAKLHGKLHGCTCRKG-ESTK-VRDQGVDPNLKDGDGATPLHFAASRG-HADCVRWLLRYGGKL-VPD  111 (207)
Q Consensus        36 ll~~g~~~~~~~~~~~~~~~~a~~~~~~-~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~~-~~~  111 (207)
                      |++.|++++..+..+.+|+++|+..++. .+.. |++.|++++..|..|.||||+|+..| +.++++.|+..|+++ ..+
T Consensus       259 Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d  338 (682)
T PHA02876        259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAAD  338 (682)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcc
Confidence            7777888888888888888888777663 2333 66888888888888888888888877 577888888888777 777


Q ss_pred             CCCCcHHHHHHhcCh-HH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        112 KFGKSPINDAAENQQ-ME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       112 ~~g~~~l~~a~~~~~-~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      ..|.||||+|+..+. .+    +++.|++++..|..|.||||+|+..++.+++++|+++|+++ ..+..|.||||+|+
T Consensus       339 ~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        339 RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL  416 (682)
T ss_pred             cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHH
Confidence            778888888776542 22    55677777777777778888777777777666666665554 23333444444443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=2.6e-29  Score=204.32  Aligned_cols=176  Identities=19%  Similarity=0.255  Sum_probs=136.9

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhcc--CCchHH-HHhcCCCCCCCCCCCCCHHHHHHH--------------cC
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR--KGESTK-VRDQGVDPNLKDGDGATPLHFAAS--------------RG   93 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~--~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~--------------~~   93 (207)
                      +++++|+++|+++|.++..|.+|+++|+..+  +.++.. |++.|++++.+|..|.||||+|+.              .+
T Consensus       298 eiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~  377 (764)
T PHA02716        298 SVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDI  377 (764)
T ss_pred             HHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccC
Confidence            6789999999999999999999999877654  334444 779999999999999999999865              36


Q ss_pred             CHHHHHHHHHhCCCc-CCCCCCCcHHHHH-H---hcChHH----Hhh---------------------------------
Q psy14140         94 HADCVRWLLRYGGKL-VPDKFGKSPINDA-A---ENQQME----VRD---------------------------------  131 (207)
Q Consensus        94 ~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a-~---~~~~~~----l~~---------------------------------  131 (207)
                      +.+++++|++.|+++ .++..|.||||.+ +   ..+..+    |++                                 
T Consensus       378 ~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~  457 (764)
T PHA02716        378 RLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKY  457 (764)
T ss_pred             hHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhc
Confidence            889999999999999 9999999999942 1   112211    111                                 


Q ss_pred             ----------------------------cCCCCCCCCCCCCcHHHHHHHCCCH-----HHHHHHHHhCCCc-cCCCCCCC
Q psy14140        132 ----------------------------QGVDPNLKDGDGATPLHFAASRGHA-----DCVRWLLRYGGKL-VPDKFGKS  177 (207)
Q Consensus       132 ----------------------------~~~~~~~~~~~g~t~l~~a~~~~~~-----~~~~~Ll~~g~~~-~~~~~g~t  177 (207)
                                                  .+.+++..|..|+||||+|+..|+.     +++++|++.|+++ .++..|+|
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~T  537 (764)
T PHA02716        458 NIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVT  537 (764)
T ss_pred             CcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCC
Confidence                                        1223455677899999999999876     4559999999999 79999999


Q ss_pred             HHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        178 PINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       178 ~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |||+|+++|+.+.+ -...++.||+.|+++
T Consensus       538 PLh~A~~~g~~~~~-~~eIvk~LL~~ga~~  566 (764)
T PHA02716        538 PLMLTMRNNRLSGH-QWYIVKNILDKRPNV  566 (764)
T ss_pred             HHHHHHHcCCcccc-HHHHHHHHHhcCCCc
Confidence            99999999986221 123477777777654

>KOG0509|consensus

Probab=99.97  E-value=6.8e-30  Score=197.78  Aligned_cols=168  Identities=29%  Similarity=0.395  Sum_probs=153.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchh-hcccchhhhhhhccCCchHH-HHhcCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHE-EAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~-~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~   79 (207)
                      .|+||+||.|+++++                +++|+++|+++|..+ ..+.+|+|+|+..++..++. |+++|+|++..|
T Consensus        79 ~tlLHWAAiNNrl~v----------------~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D  142 (600)
T KOG0509|consen   79 VTLLHWAAINNRLDV----------------ARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKD  142 (600)
T ss_pred             ccceeHHHHcCcHHH----------------HHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceec
Confidence            479999999999985                999999999999988 78889999999999988877 779999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-CCCCcHHHHHHHC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-GDGATPLHFAASR  153 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-~~g~t~l~~a~~~  153 (207)
                      .+|.+|+|+|+..++.-.+-+|+..++++ .+|.+|+|||++|+..+...    +++.++.+...| .+|.||||+|+..
T Consensus       143 ~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~  222 (600)
T KOG0509|consen  143 KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVG  222 (600)
T ss_pred             CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhc
Confidence            99999999999999999999999999999 99999999999999988755    678999999888 8999999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHc
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  185 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~  185 (207)
                      |+..++..+++-|.+. ..+.+|+||+++|.+.
T Consensus       223 gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  223 GNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999555666666 6788899999999777

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=195.60  Aligned_cols=193  Identities=17%  Similarity=0.251  Sum_probs=153.0

Q ss_pred             CCcceeehcc--CChhHHHHHhhccchhh----------------------HHHHHHHHHHcCCCCCchhhcccchhhhh
Q psy14140          2 AHPLFIRAVS--GDVKCSSQAGSMGDRLM----------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHG   57 (207)
Q Consensus         2 ~tpl~~Aa~~--g~~~~~~~~~~~~~~~~----------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a   57 (207)
                      .||||.++..  ++.++|+.|++.+....                      ..+++++|+++|+++|.++..|.+|++.|
T Consensus        36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a  115 (494)
T PHA02989         36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCF  115 (494)
T ss_pred             CCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            3677654443  36899999988776522                      13589999999999999999999998876


Q ss_pred             hhc---cCCchHH-HHhcCCCC-CCCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCc-C-CCCCCCcHHHHHHhcC---
Q psy14140         58 CTC---RKGESTK-VRDQGVDP-NLKDGDGATPLHFAASR--GHADCVRWLLRYGGKL-V-PDKFGKSPINDAAENQ---  125 (207)
Q Consensus        58 ~~~---~~~~~~~-ll~~g~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~-~-~~~~g~~~l~~a~~~~---  125 (207)
                      +..   ++.++.. |+++|+++ +..|..|.||||+|+..  ++.+++++|++.|+++ . .+..|.||+|.++..+   
T Consensus       116 ~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~  195 (494)
T PHA02989        116 IYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDV  195 (494)
T ss_pred             HHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhccccc
Confidence            544   3344444 77999999 78899999999998754  6789999999999988 4 6788999999887654   


Q ss_pred             -hHH----Hhhc--------------------------------------CCCCCCCCCCCCcHHHHHHHCCCHHHHHHH
Q psy14140        126 -QME----VRDQ--------------------------------------GVDPNLKDGDGATPLHFAASRGHADCVRWL  162 (207)
Q Consensus       126 -~~~----l~~~--------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  162 (207)
                       +.+    |++.                                      +++++.+|..|.||||+|+..++.+++++|
T Consensus       196 ~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~L  275 (494)
T PHA02989        196 ISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYL  275 (494)
T ss_pred             ccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHH
Confidence             332    2333                                      345566677899999999999999999999


Q ss_pred             HHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        163 LRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       163 l~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      +++|+++ .++..|+||||+|+..++.++++.+
T Consensus       276 L~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        276 LKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999 6899999999999999999886543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.5e-28  Score=199.50  Aligned_cols=185  Identities=20%  Similarity=0.262  Sum_probs=157.9

Q ss_pred             CCcceeehccCCh-hHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC
Q psy14140          2 AHPLFIRAVSGDV-KCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK   62 (207)
Q Consensus         2 ~tpl~~Aa~~g~~-~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~   62 (207)
                      .||||+|+..|+. ++++.+++.+....                  ..++++.|++.|++++..+..+.+|+++|+..+.
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~  353 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR  353 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCC
Confidence            4899999999986 57787777654321                  1468899999999999999999999999877553


Q ss_pred             -CchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH-----HHhhcCC
Q psy14140         63 -GESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM-----EVRDQGV  134 (207)
Q Consensus        63 -~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~-----~l~~~~~  134 (207)
                       ..+.. |++.|++++.+|..|.||||+|+..++.+++++|++.|+++ ..+..|.||||+|+..+..     .+++.|+
T Consensus       354 ~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga  433 (682)
T PHA02876        354 NKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGA  433 (682)
T ss_pred             cHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC
Confidence             44444 77999999999999999999999999999999999999999 8888999999999876543     2678999


Q ss_pred             CCCCCCCCCCcHHHHHHHCC-CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        135 DPNLKDGDGATPLHFAASRG-HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       135 ~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      +++..|..|+||||+|+..+ +.+++++|++.|+++ ..+..|.|||+.|+..+
T Consensus       434 din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        434 NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             CCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            99999999999999999876 689999999999999 68999999999998754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=195.02  Aligned_cols=193  Identities=18%  Similarity=0.204  Sum_probs=154.9

Q ss_pred             ehccCChhHHHHHhhccchhh----------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC---
Q psy14140          8 RAVSGDVKCSSQAGSMGDRLM----------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK---   62 (207)
Q Consensus         8 Aa~~g~~~~~~~~~~~~~~~~----------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~---   62 (207)
                      +...++.++|+.+++.+....                      ..+++++|+++|+++|..+..|.+|++.|+..+.   
T Consensus        45 ~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         45 QRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             hCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh
Confidence            334457778887777655421                      2478999999999999999999999999887653   


Q ss_pred             CchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHhCCCc-CC-CCCCCcHHHHHHhcC----hHH----
Q psy14140         63 GESTK-VRDQGVDPNLKDGDGATPLHFAASRGH---ADCVRWLLRYGGKL-VP-DKFGKSPINDAAENQ----QME----  128 (207)
Q Consensus        63 ~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~~~-~~-~~~g~~~l~~a~~~~----~~~----  128 (207)
                      .++.. |++.|++++.+|..|.||||+|+..++   .+++++|++.|+++ .. +..|.||+|.+....    +.+    
T Consensus       125 ~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        125 LEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            33444 779999999999999999999999887   89999999999988 44 567889999876532    111    


Q ss_pred             H---------------------------------------hhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        129 V---------------------------------------RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       129 l---------------------------------------~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      +                                       +..+++++.+|..|.||||+|+..++.+++++|++.|+++
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi  284 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI  284 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            1                                       2234677788889999999999999999999999999999


Q ss_pred             -cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        170 -VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       170 -~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                       ..+..|+|||++|+.+++.++      ++.+++.|.+
T Consensus       285 n~~d~~G~TpL~~A~~~~~~~i------v~~lL~~~~~  316 (489)
T PHA02798        285 NIITELGNTCLFTAFENESKFI------FNSILNKKPN  316 (489)
T ss_pred             cccCCCCCcHHHHHHHcCcHHH------HHHHHccCCC
Confidence             689999999999999999887      4445555543

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=191.09  Aligned_cols=188  Identities=17%  Similarity=0.294  Sum_probs=156.5

Q ss_pred             cceeehccCChhHHHHHhhccchh--------------hHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-H
Q psy14140          4 PLFIRAVSGDVKCSSQAGSMGDRL--------------MLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-V   68 (207)
Q Consensus         4 pl~~Aa~~g~~~~~~~~~~~~~~~--------------~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-l   68 (207)
                      +++.++.+|+.+.++.++......              ...++++.|+++|+++|..+..|.+|++.|+..++..+.. |
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lL   91 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAML   91 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            345667777888777666533211              0136899999999999999999999999999999988776 7


Q ss_pred             HhcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCc--CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC
Q psy14140         69 RDQGVDPNLKDGDGATPLHFAASRG--HADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD  140 (207)
Q Consensus        69 l~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~--~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~  140 (207)
                      +++|++++.+|..|.||||+|+..+  ..+++++|++.|+++  ..+..|.|||+ ++..+..+    +++.|++++..|
T Consensus        92 L~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d  170 (446)
T PHA02946         92 LTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVD  170 (446)
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccC
Confidence            7999999999999999999998765  478999999999998  46899999998 55556555    568999999999


Q ss_pred             CCCCcHHHHHHHCC--CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC--Ccceee
Q psy14140        141 GDGATPLHFAASRG--HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ--QMEVST  192 (207)
Q Consensus       141 ~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~--~~~~~~  192 (207)
                      ..|+||||.|+..+  +.+++++|+++|+++ .+|..|+||||+|+..+  +.++++
T Consensus       171 ~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~  227 (446)
T PHA02946        171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIIN  227 (446)
T ss_pred             CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHH
Confidence            99999999987654  568999999999999 68999999999999986  455543

>KOG0508|consensus

Probab=99.96  E-value=7.5e-29  Score=186.03  Aligned_cols=184  Identities=24%  Similarity=0.285  Sum_probs=157.8

Q ss_pred             CCcceeehccCChhHHHHHhhcc-chhhHHHHHHHHHHcC--CCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMG-DRLMLSNCLSLLVQHG--TLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL   77 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~-~~~~~~~~v~~ll~~g--~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~   77 (207)
                      .|||.+||.+|+.++|+.+++.. ...          +-|  ...|-....|-+|+..|++.|+..+++ |+++|+++|.
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~----------e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~  112 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASP----------EQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND  112 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCc----------cCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc
Confidence            48999999999999865555421 110          011  223334456666777788888888877 7799999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHH
Q psy14140         78 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAAS  152 (207)
Q Consensus        78 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~  152 (207)
                      ......|||.-||.-|+++++++|+++|+++ ..++.|.|.|++|+..|+.+    +++.|+|++.++..|+|+||.++.
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caE  192 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAE  192 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhh
Confidence            9888889999999999999999999999999 99999999999999999987    678999999999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehHH
Q psy14140        153 RGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSP  195 (207)
Q Consensus       153 ~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  195 (207)
                      .|+.+++++|+.+|+.+..|.+|.|||..|+..|+.+++++|.
T Consensus       193 sG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  193 SGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999999999988989999999999999999977764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=6.5e-28  Score=196.20  Aligned_cols=165  Identities=20%  Similarity=0.224  Sum_probs=139.1

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCC--chHH-HHhcCCCCCCCCCCCCCHHHHH------------------
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG--ESTK-VRDQGVDPNLKDGDGATPLHFA------------------   89 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~--~~~~-ll~~g~~~~~~~~~g~t~l~~a------------------   89 (207)
                      +++++|+++|+++|.++..+.+|++.|+..++.  +++. |++.|+++|.+|..|.||||+|                  
T Consensus       193 eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~  272 (764)
T PHA02716        193 DILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIES  272 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence            689999999999999999999999999988864  3444 8899999999999999999975                  


Q ss_pred             -------------------HHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHh--cChHH----HhhcCCCCCCCCCCC
Q psy14140         90 -------------------ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE--NQQME----VRDQGVDPNLKDGDG  143 (207)
Q Consensus        90 -------------------~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~--~~~~~----l~~~~~~~~~~~~~g  143 (207)
                                         ++.|+.+++++|++.|+++ .+|..|+||||+|+.  .++.+    |++.|++++..|..|
T Consensus       273 ~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G  352 (764)
T PHA02716        273 LDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIG  352 (764)
T ss_pred             ccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCC
Confidence                               3457789999999999999 899999999999764  33433    678999999999999


Q ss_pred             CcHHHHHHH--------------CCCHHHHHHHHHhCCCc-cCCCCCCCHHHH----HHHcCCcceeehHH
Q psy14140        144 ATPLHFAAS--------------RGHADCVRWLLRYGGKL-VPDKFGKSPIND----AAENQQMEVSTVSP  195 (207)
Q Consensus       144 ~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~----a~~~~~~~~~~~l~  195 (207)
                      +||||.|+.              .++.+++++|+++|+++ .++..|+||||.    |...++.+++++|.
T Consensus       353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLi  423 (764)
T PHA02716        353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLI  423 (764)
T ss_pred             CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHH
Confidence            999999865              36889999999999999 689999999993    22345667766653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=170.29  Aligned_cols=166  Identities=18%  Similarity=0.168  Sum_probs=139.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhcc--CCchHH-HHhcCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR--KGESTK-VRDQGVDPNLK   78 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~--~~~~~~-ll~~g~~~~~~   78 (207)
                      .||||+|+..|+.++|+.                |++.   .+..+..+.+|++.|+..+  +..+.. |++.|++++.+
T Consensus        22 ~~pL~~A~~~~~~~~vk~----------------Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~   82 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKK----------------WIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFK   82 (209)
T ss_pred             CcHHHHHHHhCcHHHHHH----------------HHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCcc
Confidence            589999999999997554                4433   2456677899999987755  344444 78999999999


Q ss_pred             C-CCCCCHHHHHHHc---CCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhc--ChHH----HhhcCCCCCCCCCCCCcHH
Q psy14140         79 D-GDGATPLHFAASR---GHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN--QQME----VRDQGVDPNLKDGDGATPL  147 (207)
Q Consensus        79 ~-~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~--~~~~----l~~~~~~~~~~~~~g~t~l  147 (207)
                      + ..|.||||+|+..   ++.+++++|++.|+++ .++..|.||||+|+..  ++.+    |++.|++++..|..|.|||
T Consensus        83 ~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~L  162 (209)
T PHA02859         83 TRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL  162 (209)
T ss_pred             CCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHH
Confidence            7 4899999998764   4789999999999999 9999999999998753  4455    6789999999999999999


Q ss_pred             HH-HHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        148 HF-AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       148 ~~-a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      |. +...++.+++++|++.|+++ .++..|+|||++|..++
T Consensus       163 h~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        163 YSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            96 56788999999999999999 68999999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.9e-27  Score=186.86  Aligned_cols=191  Identities=20%  Similarity=0.219  Sum_probs=151.6

Q ss_pred             ccCChhHHHHHhhccch---------hh---------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC------Cch
Q psy14140         10 VSGDVKCSSQAGSMGDR---------LM---------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK------GES   65 (207)
Q Consensus        10 ~~g~~~~~~~~~~~~~~---------~~---------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~------~~~   65 (207)
                      ...+.++++.|++.+..         ..         ..++|++|+++|+++|..+ .+.+|++.++..+.      ..+
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence            35677777777764433         00         1479999999999999876 45788877654432      223


Q ss_pred             HH-HHhcCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCc--CCCCCCCcHHHHHHhc--ChHH----HhhcC
Q psy14140         66 TK-VRDQGVDPNLKDGDGATPLHFAASR---GHADCVRWLLRYGGKL--VPDKFGKSPINDAAEN--QQME----VRDQG  133 (207)
Q Consensus        66 ~~-ll~~g~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~--~~~~~g~~~l~~a~~~--~~~~----l~~~~  133 (207)
                      .. |++.|+++|.+|..|.||||.|+..   ++.+++++|++.|+++  .++..|.||||+|+..  ++.+    +++.|
T Consensus        91 v~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G  170 (494)
T PHA02989         91 VKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG  170 (494)
T ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            33 7899999999999999999988754   6789999999999998  6889999999998754  3444    67899


Q ss_pred             CCCCC-CCCCCCcHHHHHHHCC----CHHHHHHHHHhCCCc-c-------------------------------------
Q psy14140        134 VDPNL-KDGDGATPLHFAASRG----HADCVRWLLRYGGKL-V-------------------------------------  170 (207)
Q Consensus       134 ~~~~~-~~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~-~-------------------------------------  170 (207)
                      ++++. .+..|.||||.+++.+    +.+++++|+++|+++ .                                     
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            99988 5789999999987764    889999999998876 2                                     


Q ss_pred             -CCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        171 -PDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       171 -~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                       ++..|+||||+|+..++.++      ++.|++.|++|
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~------v~~LL~~Gadi  282 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEA------FNYLLKLGDDI  282 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHH------HHHHHHcCCCc
Confidence             23459999999999999887      77888888875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=188.58  Aligned_cols=172  Identities=19%  Similarity=0.254  Sum_probs=146.3

Q ss_pred             HHHHHHHHHcCCCCCchhhcccchhhhhhhc-----cCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcC---CHHHHHH
Q psy14140         30 SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTC-----RKGESTK-VRDQGVDPNLKDGDGATPLHFAASRG---HADCVRW  100 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~-----~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~---~~~~~~~  100 (207)
                      .+++++|+++|+++|..+..+.+|++.++..     +...+.. |++.|+++|.+|..|.||||+|+..+   +.+++++
T Consensus        51 ~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~  130 (489)
T PHA02798         51 TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLF  130 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHH
Confidence            3899999999999999999999999887543     2234444 78999999999999999999999875   7899999


Q ss_pred             HHHhCCCc-CCCCCCCcHHHHHHhcCh---HH----HhhcCCCCCCCC-CCCCcHHHHHHHC----CCHHHHHHHHHhCC
Q psy14140        101 LLRYGGKL-VPDKFGKSPINDAAENQQ---ME----VRDQGVDPNLKD-GDGATPLHFAASR----GHADCVRWLLRYGG  167 (207)
Q Consensus       101 Ll~~~~~~-~~~~~g~~~l~~a~~~~~---~~----l~~~~~~~~~~~-~~g~t~l~~a~~~----~~~~~~~~Ll~~g~  167 (207)
                      |++.|+++ .++..|.||||+|+..++   .+    +++.|++++..+ ..|.||||.+...    ++.+++++|+++|+
T Consensus       131 Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        131 MIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            99999999 999999999999999886   44    568899999875 5788999988764    47889999988876


Q ss_pred             Cc----------------------------------------cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        168 KL----------------------------------------VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       168 ~~----------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ++                                        .++..|+||||+|+..++.++      ++.|++.|++|
T Consensus       211 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~------v~~LL~~GAdi  284 (489)
T PHA02798        211 IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI------FEYLLQLGGDI  284 (489)
T ss_pred             CcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH------HHHHHHcCCcc
Confidence            44                                        245679999999999999887      88889999875

>KOG0510|consensus

Probab=99.95  E-value=3.7e-27  Score=186.80  Aligned_cols=69  Identities=30%  Similarity=0.474  Sum_probs=26.7

Q ss_pred             HHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy14140         32 CLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  100 (207)
Q Consensus        32 ~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  100 (207)
                      +++.|+++|+++|..++.+.||+++||..++.+..+ |++.|+++...|.+|++|+|.|+++|..++++.
T Consensus       136 ~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi  205 (929)
T KOG0510|consen  136 CLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEI  205 (929)
T ss_pred             HHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhh
Confidence            344444444444444444444444444433333222 333344333333333333333333333333333

>KOG0510|consensus

Probab=99.95  E-value=6e-27  Score=185.60  Aligned_cols=200  Identities=27%  Similarity=0.344  Sum_probs=171.6

Q ss_pred             CCCcceeehccCChhHHHHHhhccchhhH-----------------HHHHHHHHHcCCCCCchhhcccchhhhhhhccCC
Q psy14140          1 MAHPLFIRAVSGDVKCSSQAGSMGDRLML-----------------SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG   63 (207)
Q Consensus         1 ~~tpl~~Aa~~g~~~~~~~~~~~~~~~~~-----------------~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~   63 (207)
                      +.+|+|+|+..|+.++++.+++++.....                 .+..+.|+..|+++-..+..+.+|++.|+..+..
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~  200 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK  200 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch
Confidence            35899999999999999999998855322                 3677999999999999899999999999999988


Q ss_pred             chHH-HHh-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----------------CCCCCCCcHHHHH
Q psy14140         64 ESTK-VRD-----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL----------------VPDKFGKSPINDA  121 (207)
Q Consensus        64 ~~~~-ll~-----~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~----------------~~~~~g~~~l~~a  121 (207)
                      ++.. ++.     .+..+|..+..+.+|||.|+..|+.++++.+++.+...                ..|++|.||||+|
T Consensus       201 e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a  280 (929)
T KOG0510|consen  201 ECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYA  280 (929)
T ss_pred             hhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHH
Confidence            8776 333     67789999999999999999999999999999887654                1477899999999


Q ss_pred             HhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHH-hCCCc--cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        122 AENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLR-YGGKL--VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       122 ~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~--~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ++.|+.+    ++..|++++.++.++.||||.|+..|++++++.|++ .+...  ..|-.|.||||+|+++|+..+    
T Consensus       281 ~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v----  356 (929)
T KOG0510|consen  281 ARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRV----  356 (929)
T ss_pred             HHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHH----
Confidence            9999887    668999999999999999999999999999999998 44444  367789999999999999998    


Q ss_pred             HHHHHHhhcccC
Q psy14140        195 PVVRRLLTIQKV  206 (207)
Q Consensus       195 ~~~~~ll~~~~~  206 (207)
                        ++.||+.|++
T Consensus       357 --~qlLl~~GA~  366 (929)
T KOG0510|consen  357 --VQLLLNKGAL  366 (929)
T ss_pred             --HHHHHhcChh
Confidence              8888888874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.7e-24  Score=166.18  Aligned_cols=175  Identities=18%  Similarity=0.093  Sum_probs=145.7

Q ss_pred             HHHHHHHHHcCCCCC------chhhcccchhhhhhh--ccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy14140         30 SNCLSLLVQHGTLPD------YHEEAKLHGKLHGCT--CRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  100 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~------~~~~~~~~~~~~a~~--~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  100 (207)
                      .+++++|+++|+++|      .++....++++.++.  .++.+++. |+++|++++..  .+.||+|.|+..++.+++++
T Consensus        90 k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~  167 (437)
T PHA02795         90 KDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEF  167 (437)
T ss_pred             HHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHH
Confidence            479999999999988      677788899998888  55555555 78999999985  44899999999999999999


Q ss_pred             HHHhCCCc--CC-----CCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        101 LLRYGGKL--VP-----DKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       101 Ll~~~~~~--~~-----~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      |++.|++.  ..     +..+.+++|.+...+..+    ++..|++++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus       168 Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        168 ILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             HHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999754  22     134778899999888877    56899999999999999999999999999999999999999


Q ss_pred             -cCCCCCCCHHHHHHHcCCc--ceeehHHHHHHHhhcccC
Q psy14140        170 -VPDKFGKSPINDAAENQQM--EVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       170 -~~~~~g~t~l~~a~~~~~~--~~~~~l~~~~~ll~~~~~  206 (207)
                       .++..|+||||+|+..|+.  .-......++.|++.|++
T Consensus       248 N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        248 NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence             6899999999999999863  111223456677776654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.8e-25  Score=178.52  Aligned_cols=170  Identities=18%  Similarity=0.150  Sum_probs=138.0

Q ss_pred             CCcceeehcc---CChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchH----H-HHhcCC
Q psy14140          2 AHPLFIRAVS---GDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGEST----K-VRDQGV   73 (207)
Q Consensus         2 ~tpl~~Aa~~---g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~----~-ll~~g~   73 (207)
                      .||||+|+..   |+.+                +|+.|+++|++++..+..+.+|++.|+..++..+.    . |++.+.
T Consensus        33 ~t~Lh~a~~~~~~~~~~----------------~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~   96 (661)
T PHA02917         33 NNALHAYLFNEHCNNVE----------------VVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG   96 (661)
T ss_pred             CcHHHHHHHhhhcCcHH----------------HHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC
Confidence            3899997555   6676                59999999999999999999999999988875432    3 556543


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHH--hcChHH----HhhcCCCCCCCCC---CC
Q psy14140         74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA--ENQQME----VRDQGVDPNLKDG---DG  143 (207)
Q Consensus        74 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~--~~~~~~----l~~~~~~~~~~~~---~g  143 (207)
                      ..+..+.  .++++.|+..++.+++++|++.|+++ .+|..|.||||.++  ..++.+    |++.|++++..|.   .|
T Consensus        97 ~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g  174 (661)
T PHA02917         97 YSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYG  174 (661)
T ss_pred             CCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccc
Confidence            3454432  36677788899999999999999999 89999999999653  466776    5678999976543   23


Q ss_pred             -----------CcHHHHHHH-----------CCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcc
Q psy14140        144 -----------ATPLHFAAS-----------RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  189 (207)
Q Consensus       144 -----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~  189 (207)
                                 .||||+|+.           .++.+++++|++.|+++ .++..|.||||+|+.+|+.+
T Consensus       175 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        175 YAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc
Confidence                       599999986           45899999999999999 68899999999999999874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=5.2e-25  Score=184.92  Aligned_cols=169  Identities=22%  Similarity=0.257  Sum_probs=149.1

Q ss_pred             CCCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC
Q psy14140          1 MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD   79 (207)
Q Consensus         1 ~~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~   79 (207)
                      |.+|||.||..|+.+                +++.|+++|+++|..+..|.+|++.|+..++.++.. |+++|++++..|
T Consensus       525 ~~~~L~~Aa~~g~~~----------------~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d  588 (823)
T PLN03192        525 MASNLLTVASTGNAA----------------LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD  588 (823)
T ss_pred             chhHHHHHHHcCCHH----------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC
Confidence            357888899998887                488899999999999999999999999999988876 779999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      ..|.||||+|+..|+.+++++|++.+... ....+.++||.|+..|+.+    +++.|++++..|..|+||||.|+..|+
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~-~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~  667 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASIS-DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH  667 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCccc-CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            99999999999999999999999876544 2345778999999999887    568999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCC-CCHHHHHHHcC
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQ  186 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g-~t~l~~a~~~~  186 (207)
                      .+++++|+++|+++ ..+..| .||+..+....
T Consensus       668 ~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        668 VDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999 577777 89988775543

>KOG4177|consensus

Probab=99.93  E-value=3.4e-26  Score=190.17  Aligned_cols=199  Identities=28%  Similarity=0.427  Sum_probs=97.7

Q ss_pred             CcceeehccCChhHHHHHhhccchhhH-----------------HHHHHHHHHcCCCCCchhhcccchhhhhhhcc-CCc
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLML-----------------SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR-KGE   64 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~-----------------~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~-~~~   64 (207)
                      ||+|.|+.+|..+++..++..+.....                 ..+++.++++|++++..+..|.++++.++..+ ...
T Consensus       376 ~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~  455 (1143)
T KOG4177|consen  376 TPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQ  455 (1143)
T ss_pred             cchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhh
Confidence            555566666666555555444433111                 24455555555555555555555555554444 222


Q ss_pred             hH-HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCC
Q psy14140         65 ST-KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNL  138 (207)
Q Consensus        65 ~~-~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~  138 (207)
                      .. .+++.|.+++.....|.||||+|+..|+.++++.+++.+... .....+-+++|.+...+...    +++.|++++.
T Consensus       456 ~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  456 IARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             hhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            21 244555555555555555555555555555555555444222 22222333333332222221    2334555555


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        139 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       139 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      .+.+|.||||.|+..|+.+.+++|+++|+++ .+++.|+||||.|+..|+.+|      +..|++.|++|
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i------~~LLlk~GA~v  599 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI------AELLLKHGASV  599 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH------HHHHHHcCCCC
Confidence            5555555555555555555555555555555 355555555555555555554      44455555443

>KOG4177|consensus

Probab=99.92  E-value=1.3e-24  Score=180.92  Aligned_cols=199  Identities=26%  Similarity=0.356  Sum_probs=177.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG   63 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~   63 (207)
                      -||||.|+..++.++|+.+++.+....                  ..+....+++.|.++|.....|.+|++.|+..++.
T Consensus       408 vTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  408 VTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             cceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence            389999999999999998777555522                  23567788999999999999999999999999999


Q ss_pred             chHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCC
Q psy14140         64 ESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPN  137 (207)
Q Consensus        64 ~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~  137 (207)
                      .+.. +++.++..+.....+.+++|.+...+...+++.+++.|+.. .++..|+||||.|+..|+..    |++.|++++
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~  567 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN  567 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc
Confidence            8888 55778888888889999999999999999999999999999 99999999999999999987    568999999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      .++..|+||||.|+..|+.+|+++|+++|+++ ..+.+|.|||+.|+..|+.++      ++.+++.+..
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~------~k~l~~~~~~  631 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSV------VKLLKVVTAT  631 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccch------hhHHHhccCc
Confidence            99999999999999999999999999999999 689999999999999999998      4555555444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=9.4e-24  Score=177.39  Aligned_cols=167  Identities=23%  Similarity=0.303  Sum_probs=139.2

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      ++-..+.+.+..  ..+.....+++.|+..++..+.. +++.|+++|..|..|.||||+|+..|+.+++++|++.|+++ 
T Consensus       508 ~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin  585 (823)
T PLN03192        508 NVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH  585 (823)
T ss_pred             cHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence            344445555543  23334567788888888877665 88999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHhcChHHHh----hcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        109 VPDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~l~----~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      .+|..|.||||+|+..++.+++    ..+...+  ...+.++||.|+..|+.+++++|+++|+++ .+|..|+||||+|+
T Consensus       586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~  663 (823)
T PLN03192        586 IRDANGNTALWNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM  663 (823)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            8999999999999999998743    3443332  346779999999999999999999999999 68999999999999


Q ss_pred             HcCCcceeehHHHHHHHhhcccCC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..|+.++      ++.|++.|+++
T Consensus       664 ~~g~~~i------v~~Ll~~GAdv  681 (823)
T PLN03192        664 AEDHVDM------VRLLIMNGADV  681 (823)
T ss_pred             HCCcHHH------HHHHHHcCCCC
Confidence            9999888      77778888765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=167.93  Aligned_cols=197  Identities=15%  Similarity=0.180  Sum_probs=141.0

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-------------------------------HHHHHHHHHHcCCCCCchhhccc
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-------------------------------LSNCLSLLVQHGTLPDYHEEAKL   51 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-------------------------------~~~~v~~ll~~g~~~~~~~~~~~   51 (207)
                      +|+++|+.++++++|+.|++.+....                               ..+++++|+++|+++|.++..|.
T Consensus       157 ~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~  236 (672)
T PHA02730        157 VDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGS  236 (672)
T ss_pred             hhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCC
Confidence            79999999999999999998665541                               13899999999999999999999


Q ss_pred             chhhhhhhc--cCCchHH--------------------------------------------------------------
Q psy14140         52 HGKLHGCTC--RKGESTK--------------------------------------------------------------   67 (207)
Q Consensus        52 ~~~~~a~~~--~~~~~~~--------------------------------------------------------------   67 (207)
                      +|++.+..+  ++.+++.                                                              
T Consensus       237 TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  316 (672)
T PHA02730        237 LPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSIT  316 (672)
T ss_pred             CHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccc
Confidence            999742222  1111111                                                              


Q ss_pred             ------------------------------------------------HHhcCCCCCCCCCCCCCHHHHHHHcCC----H
Q psy14140         68 ------------------------------------------------VRDQGVDPNLKDGDGATPLHFAASRGH----A   95 (207)
Q Consensus        68 ------------------------------------------------ll~~g~~~~~~~~~g~t~l~~a~~~~~----~   95 (207)
                                                                      |+++|+++|.. ..|.||||+|+..++    .
T Consensus       317 ~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~  395 (672)
T PHA02730        317 SYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDV  395 (672)
T ss_pred             cccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchH
Confidence                                                            33567777764 577888888777664    6


Q ss_pred             HHHHHHHHhCCC--c-CCCCCCCcHHHH---HHhcCh------------HH-HhhcCCCCCCCCCCCCcHHHHHHHCCCH
Q psy14140         96 DCVRWLLRYGGK--L-VPDKFGKSPIND---AAENQQ------------ME-VRDQGVDPNLKDGDGATPLHFAASRGHA  156 (207)
Q Consensus        96 ~~~~~Ll~~~~~--~-~~~~~g~~~l~~---a~~~~~------------~~-l~~~~~~~~~~~~~g~t~l~~a~~~~~~  156 (207)
                      +++++|+++|++  + .++..|.||||.   +...+.            .+ ++..|++++..|..|.||||+|+..++.
T Consensus       396 eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~  475 (672)
T PHA02730        396 NVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNI  475 (672)
T ss_pred             HHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCH
Confidence            888888888763  4 667778888873   222211            12 5677888888888888888888888888


Q ss_pred             HHHHHHHHhCCCc-cCCC-CCCCHHHHHHHc--CCcceeehHHHHHHHhhcccC
Q psy14140        157 DCVRWLLRYGGKL-VPDK-FGKSPINDAAEN--QQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       157 ~~~~~Ll~~g~~~-~~~~-~g~t~l~~a~~~--~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      +++++|+++|+++ ..+. .|.||||.|+..  ++.++      ++.|+..|++
T Consensus       476 eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eI------v~~LLs~ga~  523 (672)
T PHA02730        476 QFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKL------VDLLLSYHPT  523 (672)
T ss_pred             HHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHH------HHHHHHcCCC
Confidence            8888888888888 4554 478888888763  45554      6667777654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.6e-23  Score=146.55  Aligned_cols=155  Identities=14%  Similarity=0.093  Sum_probs=127.3

Q ss_pred             CchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCc-CCC-CCCCcHH
Q psy14140         44 DYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASR--GHADCVRWLLRYGGKL-VPD-KFGKSPI  118 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~-~~~-~~g~~~l  118 (207)
                      ++......+|++.|+..++..++. |++.   ++..+..|.||||+|+..  ++.+++++|++.|+++ .++ ..|.|||
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            344466788999999999888776 5543   567888999999999985  4899999999999999 665 5899999


Q ss_pred             HHHHhcC---hHH----HhhcCCCCCCCCCCCCcHHHHHHH--CCCHHHHHHHHHhCCCc-cCCCCCCCHHHH-HHHcCC
Q psy14140        119 NDAAENQ---QME----VRDQGVDPNLKDGDGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPIND-AAENQQ  187 (207)
Q Consensus       119 ~~a~~~~---~~~----l~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~-a~~~~~  187 (207)
                      |+|+...   ..+    +++.|++++..|..|.||||.|+.  .++.+++++|++.|+++ .++..|.||||. +...++
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC
Confidence            9987542   444    568999999999999999999876  46899999999999999 689999999995 566677


Q ss_pred             cceeehHHHHHHHhhcccCC
Q psy14140        188 MEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       188 ~~~~~~l~~~~~ll~~~~~p  207 (207)
                      .++      ++.|++.|++|
T Consensus       172 ~~i------v~~Ll~~Gadi  185 (209)
T PHA02859        172 KKI------FDFLTSLGIDI  185 (209)
T ss_pred             HHH------HHHHHHcCCCC
Confidence            776      66677777764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.8e-23  Score=159.51  Aligned_cols=150  Identities=16%  Similarity=0.171  Sum_probs=129.8

Q ss_pred             CCcceeehc--cCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCC
Q psy14140          2 AHPLFIRAV--SGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLK   78 (207)
Q Consensus         2 ~tpl~~Aa~--~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~   78 (207)
                      +|+||+|+.  .|+.+                +|++|+++|++++..  .+.+|++.|+..++..+.. |+++|++..-.
T Consensus       117 ~~~L~~~~~n~~n~~e----------------iV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~  178 (437)
T PHA02795        117 QDLLLYYLSNAYVEID----------------IVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDEND  178 (437)
T ss_pred             cHHHHHHHHhcCCCHH----------------HHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCccccc
Confidence            689999999  55554                699999999999874  3477999988888888877 77999854322


Q ss_pred             ------CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHH
Q psy14140         79 ------DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPL  147 (207)
Q Consensus        79 ------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l  147 (207)
                            +..+.+++|.|+..++.+++++|++.|+++ .++..|.||||+|+..++.+    |++.|++++..+..|.|||
T Consensus       179 ~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpL  258 (437)
T PHA02795        179 VKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCL  258 (437)
T ss_pred             ccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                  234778999999999999999999999999 99999999999999999987    6689999999999999999


Q ss_pred             HHHHHCC--------CHHHHHHHHHhCCCc
Q psy14140        148 HFAASRG--------HADCVRWLLRYGGKL  169 (207)
Q Consensus       148 ~~a~~~~--------~~~~~~~Ll~~g~~~  169 (207)
                      |.|+..|        +.+++++|+++|+++
T Consensus       259 h~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        259 DVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999988        469999999999988

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=165.97  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=141.0

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+.+|+.++++            ++++.|++.+...|..+..  .++++|+..++.+++. |++.|+++|.+|.
T Consensus        69 ~TpL~~Aa~~g~~~v~~------------~~~~~Ll~~~~~~n~~~~~--~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~  134 (661)
T PHA02917         69 LTPLEEYTNSRHVKVNK------------DIAMALLEATGYSNINDFN--IFSYMKSKNVDVDLIKVLVEHGFDLSVKCE  134 (661)
T ss_pred             CCHHHHHHHcCChhHHH------------HHHHHHHhccCCCCCCCcc--hHHHHHhhcCCHHHHHHHHHcCCCCCccCC
Confidence            48999999999988743            5678888765444554322  3445566666667666 7799999999999


Q ss_pred             CCCCHHHHHH--HcCCHHHHHHHHHhCCCc-CCCC---CC-----------CcHHHHHHh-----------cChHH----
Q psy14140         81 DGATPLHFAA--SRGHADCVRWLLRYGGKL-VPDK---FG-----------KSPINDAAE-----------NQQME----  128 (207)
Q Consensus        81 ~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~-~~~~---~g-----------~~~l~~a~~-----------~~~~~----  128 (207)
                      .|.||||.++  ..++.+++++|++.|+++ ..+.   .|           .||||+|+.           .++.+    
T Consensus       135 ~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~  214 (661)
T PHA02917        135 NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKC  214 (661)
T ss_pred             CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHH
Confidence            9999999654  468999999999999988 4432   33           599999975           23444    


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHCCCH--HHHHHHHHhCCCc-----cCCCCCCCHHHHHHHcCCc-ce--eehHHHHH
Q psy14140        129 VRDQGVDPNLKDGDGATPLHFAASRGHA--DCVRWLLRYGGKL-----VPDKFGKSPINDAAENQQM-EV--STVSPVVR  198 (207)
Q Consensus       129 l~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~~-----~~~~~g~t~l~~a~~~~~~-~~--~~~l~~~~  198 (207)
                      |++.|++++..|..|.||||+|+..|+.  +++++|++ |+++     ..+..|.+|+++|+--++. .+  ..-...++
T Consensus       215 Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~  293 (661)
T PHA02917        215 LINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVK  293 (661)
T ss_pred             HHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHH
Confidence            6689999999999999999999999985  79999874 7766     2556788888888832211 10  11356688


Q ss_pred             HHhhcccC
Q psy14140        199 RLLTIQKV  206 (207)
Q Consensus       199 ~ll~~~~~  206 (207)
                      .|++.|++
T Consensus       294 ~Li~~Ga~  301 (661)
T PHA02917        294 LFLENGKP  301 (661)
T ss_pred             HHHhCCCC
Confidence            88888864

>KOG0508|consensus

Probab=99.90  E-value=1.2e-23  Score=158.28  Aligned_cols=147  Identities=29%  Similarity=0.487  Sum_probs=129.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      ++|||.|+..|++++                |+.|+++|+++|....++.+|+..||.-|.-+++. |+++|+|++..+.
T Consensus        85 appLWaAsaAGHl~v----------------Vk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr  148 (615)
T KOG0508|consen   85 APPLWAASAAGHLEV----------------VKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR  148 (615)
T ss_pred             CchhhHHhccCcHHH----------------HHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc
Confidence            689999999999985                88888899999988888889999999999888776 8899999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.|.|++||..||.+++++|++.|+++ .++..|.|+||.++..|+.+    ++..|+.++ .|..|.|||..|...|+
T Consensus       149 hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  149 HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcc
Confidence            9999999999999999999999999999 88999999999999999887    456676665 45569999999999999


Q ss_pred             HHHHHHHHHh
Q psy14140        156 ADCVRWLLRY  165 (207)
Q Consensus       156 ~~~~~~Ll~~  165 (207)
                      .+++++|++.
T Consensus       228 ~~iVe~L~~~  237 (615)
T KOG0508|consen  228 TDIVERLLQC  237 (615)
T ss_pred             hHHHHHHhcC
Confidence            9999999853

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.3e-22  Score=160.50  Aligned_cols=179  Identities=15%  Similarity=0.107  Sum_probs=140.9

Q ss_pred             CCcceeehccCC---hhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhcc--CCchHH-HHhcCC--
Q psy14140          2 AHPLFIRAVSGD---VKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR--KGESTK-VRDQGV--   73 (207)
Q Consensus         2 ~tpl~~Aa~~g~---~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~--~~~~~~-ll~~g~--   73 (207)
                      .||||+|+.+|+   .+                ++++|+++|++++.++..|.+|++.|+..+  +.+++. |++.|+  
T Consensus        42 ~TaLh~A~~~~~~~~~e----------------ivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~  105 (672)
T PHA02730         42 NNALHCYVSNKCDTDIK----------------IVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA  105 (672)
T ss_pred             CcHHHHHHHcCCcCcHH----------------HHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC
Confidence            489999999974   55                699999999999999999999999988866  455555 778865  


Q ss_pred             CCCCCCCCCCCHHHHHHH--cCCHHHHHHHHH-hCCCc-CC-C----CCCCcHHHHHHhcChHH----HhhcCCCCC---
Q psy14140         74 DPNLKDGDGATPLHFAAS--RGHADCVRWLLR-YGGKL-VP-D----KFGKSPINDAAENQQME----VRDQGVDPN---  137 (207)
Q Consensus        74 ~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~-~~~~~-~~-~----~~g~~~l~~a~~~~~~~----l~~~~~~~~---  137 (207)
                      +++..+..+.+||+.++.  .++.+++++|+. .+.++ .. +    ..|.+|++.+...++.+    +++.|++++   
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~  185 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYV  185 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccc
Confidence            447777778899999888  889999999996 55565 22 1    37899999999999988    567899984   


Q ss_pred             ----CCCCCC-CcHHHHH------HHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH--HHHcCCcceeehHHH
Q psy14140        138 ----LKDGDG-ATPLHFA------ASRGHADCVRWLLRYGGKL-VPDKFGKSPIND--AAENQQMEVSTVSPV  196 (207)
Q Consensus       138 ----~~~~~g-~t~l~~a------~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~--a~~~~~~~~~~~l~~  196 (207)
                          ..+..+ .|.|+++      ....+.+++++|+++|+++ .++..|+||||+  +...++.|++++|-.
T Consensus       186 ~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        186 FRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence                133334 4555533      3456899999999999999 699999999995  555667888777654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2e-21  Score=133.74  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             cCCCCCchhhcccchhhhhhhccCCc----hH-HHHhcCCCCCCCCCCCCCHHHHHHHcCCHH---HHHHHHHhCCCc-C
Q psy14140         39 HGTLPDYHEEAKLHGKLHGCTCRKGE----ST-KVRDQGVDPNLKDGDGATPLHFAASRGHAD---CVRWLLRYGGKL-V  109 (207)
Q Consensus        39 ~g~~~~~~~~~~~~~~~~a~~~~~~~----~~-~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~---~~~~Ll~~~~~~-~  109 (207)
                      +|++++..+..+..+++.||..++..    +. .+.+.|++++..|..|+||||+|+..++.+   ++++|++.|+++ .
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            55666666666666777766666532    21 134667777777777777777777766543   366777777766 5


Q ss_pred             CC-CCCCcHHHHHHhcChHH----Hh-hcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCC
Q psy14140        110 PD-KFGKSPINDAAENQQME----VR-DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG  175 (207)
Q Consensus       110 ~~-~~g~~~l~~a~~~~~~~----l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g  175 (207)
                      ++ ..|.||||+|+..++.+    ++ ..+++++..+..|.||||+|+..++.+++++|+++|+++ .++..|
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            55 46777777777777655    23 256777777777777777777777777777777777766 344444

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=6e-21  Score=131.92  Aligned_cols=124  Identities=28%  Similarity=0.367  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHh------CCCc-CCCCCCCcHHHHHHhcChH----H----HhhcCCCCCCC
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRY------GGKL-VPDKFGKSPINDAAENQQM----E----VRDQGVDPNLK  139 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~------~~~~-~~~~~g~~~l~~a~~~~~~----~----l~~~~~~~~~~  139 (207)
                      ++.++..|.||||+|++.|+.++++.|+..      +..+ .+|..|.||||+|+..++.    +    ++..|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            455677889999999999999998887542      4555 7888899999999988863    3    45688899988


Q ss_pred             CC-CCCcHHHHHHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHH
Q psy14140        140 DG-DGATPLHFAASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVR  198 (207)
Q Consensus       140 ~~-~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  198 (207)
                      +. .|.||||+|+..++.+++++|++ .|+++ .++..|+|||+.|+..++.+++++|....
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            85 89999999999999999999997 58888 68889999999999999988877765543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=132.35  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=112.9

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH-------HHhhcCCCCC
Q psy14140         70 DQGVDPNLKDGDGATPLHFAASRGHA----DCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM-------EVRDQGVDPN  137 (207)
Q Consensus        70 ~~g~~~~~~~~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~-------~l~~~~~~~~  137 (207)
                      .+|++++..+..+.++||.|++.|+.    +++++|++.+..+ .+|..|+||||+|+..+..       .+++.|++++
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            46788888888999999999999998    5666777888777 7899999999999988763       2568999999


Q ss_pred             CCC-CCCCcHHHHHHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        138 LKD-GDGATPLHFAASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       138 ~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ..+ ..|.||||+|+..++.+++++|+. .|+++ .++..|+||||+|+..++.++      ++.|++.|++
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~i------v~~Ll~~ga~  153 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRM------MEILRANGAV  153 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHH------HHHHHHcCCC
Confidence            998 589999999999999999999995 79999 688999999999999999887      5666666654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.85  E-value=3.2e-20  Score=147.84  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhh-ccCCchHH-HHhcCCCC---------------------------------
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCT-CRKGESTK-VRDQGVDP---------------------------------   75 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~-~~~~~~~~-ll~~g~~~---------------------------------   75 (207)
                      ++|++|+++|+++|..+..+.++++.|.. .++.++.. |++.|+++                                 
T Consensus        86 Elvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (631)
T PHA02792         86 ELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYD  165 (631)
T ss_pred             HHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccc
Confidence            56777777777777776666665555533 34455544 55666652                                 


Q ss_pred             ---CCCCCCCCCHHHHHHHcC-------CHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcC
Q psy14140         76 ---NLKDGDGATPLHFAASRG-------HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  125 (207)
Q Consensus        76 ---~~~~~~g~t~l~~a~~~~-------~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~  125 (207)
                         |..|..|.||||+++..+       +.++++.|+++|+.+ ..|..|.||||+|+.+.
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence               244556888888888887       788889999988888 88888888888887555

>KOG0505|consensus

Probab=99.85  E-value=3.9e-21  Score=146.72  Aligned_cols=166  Identities=27%  Similarity=0.387  Sum_probs=143.8

Q ss_pred             HHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-C
Q psy14140         32 CLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V  109 (207)
Q Consensus        32 ~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~  109 (207)
                      =+..|+..|+.+|..+..+.++++.+|...+..++. +++.|+++|..|..|+||+|.|+..|+..++++|++.|++. .
T Consensus        55 ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~a  134 (527)
T KOG0505|consen   55 EVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLA  134 (527)
T ss_pred             HHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhh
Confidence            488889999999999999999999999999988887 77999999999999999999999999999999999999999 8


Q ss_pred             CCCCCCcHHHHHHhcChHH------------------------------HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy14140        110 PDKFGKSPINDAAENQQME------------------------------VRDQGVDPNLKDGDGATPLHFAASRGHADCV  159 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~~------------------------------l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  159 (207)
                      .+..|..|...+.......                              .+..|...+..+..|.|+||.|+..|+.+..
T Consensus       135 vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~  214 (527)
T KOG0505|consen  135 VNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVA  214 (527)
T ss_pred             ccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHH
Confidence            8888877754443221111                              1246888888888899999999999999999


Q ss_pred             HHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        160 RWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       160 ~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      ++|++.|.++ .+|..|+||||.|+-.|..+.+++|...
T Consensus       215 ~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  215 ALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             HHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHh
Confidence            9999999999 7999999999999999999986655443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=5.6e-21  Score=159.67  Aligned_cols=191  Identities=19%  Similarity=0.150  Sum_probs=141.3

Q ss_pred             CcceeehccCChhHHHHHhhc--cchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSM--GDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK   62 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~--~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~   62 (207)
                      .+++.|+.+|+.+.++.+++.  +...+                  ..+++++|+++|+    .+..|.++++.|+....
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccH
Confidence            357788888888888877766  22111                  1368899999887    56678888888766433


Q ss_pred             CchHHHH----hcCCC------CC----CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC--------------CC
Q psy14140         63 GESTKVR----DQGVD------PN----LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD--------------KF  113 (207)
Q Consensus        63 ~~~~~ll----~~g~~------~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~--------------~~  113 (207)
                      ..+..++    ..+.+      ++    ..+..|.||||+|+..++.+++++|++.|+++ .++              ..
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~  174 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH  174 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence            3333322    22211      11    12346999999999999999999999999988 332              25


Q ss_pred             CCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCC---------CHHHHHHHHHhCCCc--------cCC
Q psy14140        114 GKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG---------HADCVRWLLRYGGKL--------VPD  172 (207)
Q Consensus       114 g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~--------~~~  172 (207)
                      |.+|||.|+..++.+    +++.|++++..|..|+||||+|+..+         ...+.+++++.+...        ..|
T Consensus       175 g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N  254 (743)
T TIGR00870       175 GESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILN  254 (743)
T ss_pred             cccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcC
Confidence            899999999999887    46799999999999999999999886         234666666655443        368


Q ss_pred             CCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        173 KFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       173 ~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      ..|.|||++|+..|+.++++++-.+
T Consensus       255 ~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       255 HQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             CCCCCchhhhhhcCCccHHHHHHHH
Confidence            8999999999999999997665443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.85  E-value=2.6e-21  Score=132.59  Aligned_cols=157  Identities=24%  Similarity=0.237  Sum_probs=135.9

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-C
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V  109 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~  109 (207)
                      ..+...+.+|+..|.-+..+++|..++....+-... ++.....+|..|+.|.|||.+|+..|+++++++|++.|+++ .
T Consensus       110 ~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~-~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~  188 (296)
T KOG0502|consen  110 DKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVV-DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA  188 (296)
T ss_pred             ceeeeeecccccCCccccccCChhhHHHHHHHHHHH-HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh
Confidence            456777888888888888888888776554422222 23345578999999999999999999999999999999999 7


Q ss_pred             CCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHH
Q psy14140        110 PDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~  184 (207)
                      ......++|..|++.|..+    ++..+.++|..|.+|.|||.+|++.++.+|++.|+..|+++ ..+.+|.+++..|..
T Consensus       189 lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  189 LGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence            8888899999999999887    45789999999999999999999999999999999999999 688999999999999


Q ss_pred             cCCc
Q psy14140        185 NQQM  188 (207)
Q Consensus       185 ~~~~  188 (207)
                      .|+-
T Consensus       269 lGyr  272 (296)
T KOG0502|consen  269 LGYR  272 (296)
T ss_pred             hhhH
Confidence            9987

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=9e-20  Score=145.33  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCC--CcHHHHHHhcChHH-------HhhcCCCCC
Q psy14140         68 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG--KSPINDAAENQQME-------VRDQGVDPN  137 (207)
Q Consensus        68 ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g--~~~l~~a~~~~~~~-------l~~~~~~~~  137 (207)
                      +++.|++...  .....+++.|+..++.+++++|++.|+++ .+|..|  .||||.|......+       ++..|++++
T Consensus       327 LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN  404 (631)
T PHA02792        327 MIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN  404 (631)
T ss_pred             HHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc
Confidence            5677877652  23456788899999999999999999999 777664  69999877655432       457899999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHH---cCCcceeehH-HHHHHHhhccc
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE---NQQMEVSTVS-PVVRRLLTIQK  205 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~---~~~~~~~~~l-~~~~~ll~~~~  205 (207)
                      ..|..|.||||.|+..++.+++++|+++|+++ .++..|+|||++|..   ++..++++.+ ..++.+|..|-
T Consensus       405 ~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        405 KIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999 689999999999976   4555665544 44555555553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=138.37  Aligned_cols=146  Identities=18%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchh----hcccchhhhhhhccCCchHH-HHhcCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHE----EAKLHGKLHGCTCRKGESTK-VRDQGVDPN   76 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~----~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~   76 (207)
                      ++|||.|+..|+.+                ++++|+++|+++|..+    ..+.+|++.|+..++.++.. |+++|++++
T Consensus        34 ~~lL~~A~~~~~~e----------------ivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN   97 (300)
T PHA02884         34 ANILYSSIKFHYTD----------------IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN   97 (300)
T ss_pred             CHHHHHHHHcCCHH----------------HHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence            45666666666665                4667777777777653    35667777776666665555 557777777


Q ss_pred             CC-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         77 LK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        77 ~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      .. +..|.||||+|+..++.+++++|++.|+++ .++..|.||+|+|+..++..+.....+.+ .+..+.+|.+..   +
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~  173 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE-ISNFYKHPKKIL---I  173 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-ccccccChhhhh---c
Confidence            65 345777777777777777777777777777 66677777777776655544322111111 334455565543   2


Q ss_pred             CHHHHHHHHHhCC
Q psy14140        155 HADCVRWLLRYGG  167 (207)
Q Consensus       155 ~~~~~~~Ll~~g~  167 (207)
                      ..++++.|+++++
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            4566666666655

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.7e-20  Score=126.89  Aligned_cols=126  Identities=20%  Similarity=0.238  Sum_probs=98.6

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-----c-CCCCCCCcHHHHHHhcChHH-------HhhcCCCCCCCC-
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-----L-VPDKFGKSPINDAAENQQME-------VRDQGVDPNLKD-  140 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~-~~~~~g~~~l~~a~~~~~~~-------l~~~~~~~~~~~-  140 (207)
                      .+.+|..|.||||+|++.|+.+.+........+     . .++..|.||||+|+..+..+       +++.|++++..+ 
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            456677899999999999984322211111111     1 46889999999999888642       568899999988 


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        141 GDGATPLHFAASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       141 ~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ..|+||||+|+..++.+++++|+. .|+++ ..+..|+||||+|+..++.++      ++.|++.|++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i------~~~Ll~~ga~  151 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKM------MNILRAKGAQ  151 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHH------HHHHHHcCCC
Confidence            489999999999999999999997 48888 688899999999999998887      6666777665

>KOG0507|consensus

Probab=99.83  E-value=1.4e-20  Score=148.74  Aligned_cols=176  Identities=22%  Similarity=0.215  Sum_probs=145.6

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      |.||-|+++|+.++                +++|+++-+-.+..+..+..|+++|+..++.+++. ++.++..+|.+...
T Consensus        51 Talhha~Lng~~~i----------------s~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e  114 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQI----------------SKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE  114 (854)
T ss_pred             hHHHHHHhcCchHH----------------HHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccccc
Confidence            67899999999986                55666666666777788889999998888887776 66777888899999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHhhcCCC------------CCCCCCCCCcHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQGVD------------PNLKDGDGATPLH  148 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~~~~~~------------~~~~~~~g~t~l~  148 (207)
                      |.+|||.++..+|.+++.+|+.+|++. .++..+.|++..|++.|..+++..++.            -...+..+.+++|
T Consensus       115 ~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  115 NETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             CcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence            999999999999999999999999999 999999999999999998774321111            1223446778999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        149 FAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      +|++.|+.++++.|++.|.+++.....-|+||.|+..|..+++.+|
T Consensus       195 laakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~l  240 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFL  240 (854)
T ss_pred             hhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHH
Confidence            9999999999999999999997777777999999999999995443

>KOG0502|consensus

Probab=99.82  E-value=4.6e-20  Score=126.54  Aligned_cols=157  Identities=22%  Similarity=0.243  Sum_probs=135.0

Q ss_pred             CchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHH
Q psy14140         44 DYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAA  122 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~  122 (207)
                      +..+++|+..++.++-|++..... .+..|...|..+--+.+|+.++.-..+++.+..+.+... -..|.+|.|||.||+
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~V-N~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV-NACDEFGFTPLIWAA  168 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccc-cCccccCchHhHHHH
Confidence            445566888888888888655544 779999999999999999999998888887766655421 167999999999999


Q ss_pred             hcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        123 ENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       123 ~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      ..|++.    +++.|++++.......++|.+|++.|+.+++++|+.+++++ .-|.+|-|||-+|+..++.+|      +
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkc------v  242 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKC------V  242 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHH------H
Confidence            999987    56899999999889999999999999999999999999999 689999999999999999999      7


Q ss_pred             HHHhhcccCC
Q psy14140        198 RRLLTIQKVP  207 (207)
Q Consensus       198 ~~ll~~~~~p  207 (207)
                      +.||.-|++|
T Consensus       243 e~Ll~sGAd~  252 (296)
T KOG0502|consen  243 ESLLNSGADV  252 (296)
T ss_pred             HHHHhcCCCc
Confidence            7778877765

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=4.5e-19  Score=122.60  Aligned_cols=126  Identities=15%  Similarity=0.198  Sum_probs=109.3

Q ss_pred             CchhhcccchhhhhhhccCCchHHHH-------hcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHhCCCc-CCC
Q psy14140         44 DYHEEAKLHGKLHGCTCRKGESTKVR-------DQGVDPNLKDGDGATPLHFAASRGH----ADCVRWLLRYGGKL-VPD  111 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~~~~~~~~~ll-------~~g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~-~~~  111 (207)
                      +.++..+.++++.|+..++..+...+       ..|++++.+|..|.||||+|+..++    .+++++|++.|+++ .++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            45667889999999999998887732       3468899999999999999999998    58999999999999 667


Q ss_pred             C-CCCcHHHHHHhcChHH----Hhh-cCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        112 K-FGKSPINDAAENQQME----VRD-QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       112 ~-~g~~~l~~a~~~~~~~----l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      . .|.||||+|+..++.+    |+. .+++++..|..|+|||++|...++.+++++|++.++..
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4 8999999999999877    444 58999999999999999999999999999999876443

>KOG0514|consensus

Probab=99.81  E-value=1.2e-19  Score=132.78  Aligned_cols=155  Identities=21%  Similarity=0.284  Sum_probs=133.6

Q ss_pred             CCCchhhcccchhhhhhhccCCchHH-HHhc-CCCCCCCCCCCCCHHHHHHH-----cCCHHHHHHHHHhCCCc-CCCCC
Q psy14140         42 LPDYHEEAKLHGKLHGCTCRKGESTK-VRDQ-GVDPNLKDGDGATPLHFAAS-----RGHADCVRWLLRYGGKL-VPDKF  113 (207)
Q Consensus        42 ~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~-g~~~~~~~~~g~t~l~~a~~-----~~~~~~~~~Ll~~~~~~-~~~~~  113 (207)
                      .+|+-|.+|.+++|++....|..++. |+.. -+++|.++..|+||+++++.     ..+.+++..|...|..- ....-
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            45788899999999999999998887 6644 47999999999999999875     34668888888887544 55567


Q ss_pred             CCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCc-cCCCCCCCHHHHHHHcCC
Q psy14140        114 GKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQ  187 (207)
Q Consensus       114 g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~-~~~~~g~t~l~~a~~~~~  187 (207)
                      |+|+|..|+.+|+.+    |+..|+++|.+|.+|.|+|+.|+.+||.+++++||.. +++. ..|..|.|+|.+|...|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            999999999999988    5678999999999999999999999999999999864 6777 688999999999999999


Q ss_pred             cceeehHHH
Q psy14140        188 MEVSTVSPV  196 (207)
Q Consensus       188 ~~~~~~l~~  196 (207)
                      -||..+|=.
T Consensus       420 ~eIa~mlYa  428 (452)
T KOG0514|consen  420 REIAVMLYA  428 (452)
T ss_pred             hHHHHHHHH
Confidence            999887643

>KOG0514|consensus

Probab=99.80  E-value=4.8e-19  Score=129.77  Aligned_cols=147  Identities=26%  Similarity=0.337  Sum_probs=122.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcC-CCCCchhhcccchhhhhhhccCCc-----hHH-HHhcCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHG-TLPDYHEEAKLHGKLHGCTCRKGE-----STK-VRDQGVD   74 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g-~~~~~~~~~~~~~~~~a~~~~~~~-----~~~-ll~~g~~   74 (207)
                      -|+||||+..+|+++                |+.|++.| +++|.++..|.+|.++++...-..     ++. |.+.| |
T Consensus       269 NTALHYsVSHaNF~V----------------V~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-n  331 (452)
T KOG0514|consen  269 NTALHYAVSHANFDV----------------VSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-D  331 (452)
T ss_pred             CeeeeeeecccchHH----------------HHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-C
Confidence            389999999999997                55555555 588999999999998765554322     121 44444 8


Q ss_pred             CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHh-----hcCCCCCCCCCCCCcHH
Q psy14140         75 PNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR-----DQGVDPNLKDGDGATPL  147 (207)
Q Consensus        75 ~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~-----~~~~~~~~~~~~g~t~l  147 (207)
                      +|.+.+ .|+|+|++|++.|+.++++.|+.+|+++ ..|.+|.|+|..|+.+|+.+++     ..+++....|.+|.|+|
T Consensus       332 VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  332 VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTAL  411 (452)
T ss_pred             cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhh
Confidence            887754 6999999999999999999999999999 9999999999999999999844     57889999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHh
Q psy14140        148 HFAASRGHADCVRWLLRY  165 (207)
Q Consensus       148 ~~a~~~~~~~~~~~Ll~~  165 (207)
                      .+|...|+.++.-+|-.+
T Consensus       412 ~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  412 SIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhHHhcCchHHHHHHHHH
Confidence            999999999998877543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=2.9e-19  Score=149.43  Aligned_cols=165  Identities=18%  Similarity=0.121  Sum_probs=127.6

Q ss_pred             hhHHHHHhhccchhhHHHHHHHHHHc--CCCCCchhhcccchhh-hhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHH
Q psy14140         14 VKCSSQAGSMGDRLMLSNCLSLLVQH--GTLPDYHEEAKLHGKL-HGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFA   89 (207)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~v~~ll~~--g~~~~~~~~~~~~~~~-~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a   89 (207)
                      ...+..+++.++.    +.++.++++  +.++|..+..|.+|++ .|+..++..+.. |++.|.    .+..|.||||.|
T Consensus        18 ~~~~l~A~~~g~~----~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        18 EKAFLPAAERGDL----ASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHcCCH----HHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            3344455555555    688999998  8999999999999999 666666667776 556665    677899999999


Q ss_pred             HHcC---CHHHHHHHHHhCCC---------c--CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-----------
Q psy14140         90 ASRG---HADCVRWLLRYGGK---------L--VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-----------  140 (207)
Q Consensus        90 ~~~~---~~~~~~~Ll~~~~~---------~--~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-----------  140 (207)
                      +..+   ...++..+...+..         .  .....|.||||+|+..++.+    |++.|++++..+           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   22344444444322         1  23357999999999999988    567899888542           


Q ss_pred             ---CCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        141 ---GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       141 ---~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                         ..|.|||+.|+..++.+++++|++.|+++ ..|..|+||||+|+..+
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence               35889999999999999999999999999 68899999999999986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3.2e-18  Score=126.90  Aligned_cols=145  Identities=16%  Similarity=0.210  Sum_probs=112.7

Q ss_pred             Cchhhcccchhhhhhh-ccCCchHH-HHhcCCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC-CCCCC
Q psy14140         44 DYHEEAKLHGKLHGCT-CRKGESTK-VRDQGVDPNLKD----GDGATPLHFAASRGHADCVRWLLRYGGKL-VP-DKFGK  115 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~-~~~~~~~~-ll~~g~~~~~~~----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~-~~~g~  115 (207)
                      ..++..+.+++++++. .++.++.. |+++|++++.++    ..|.||||+|+..++.+++++|++.|+++ .. +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            3455666666665444 45556655 779999999874    58999999999999999999999999999 54 56899


Q ss_pred             cHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCccee
Q psy14140        116 SPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVS  191 (207)
Q Consensus       116 ~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~  191 (207)
                      ||||.|+..++.+    ++..|++++..+..|.|||+.|+..++.+++..+.  |.  ..+..+.+|++++   ++.|++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN--EISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC--cccccccChhhhh---ccHHHH
Confidence            9999999999887    56799999999999999999999988888775554  22  2456677888764   356666


Q ss_pred             ehHH
Q psy14140        192 TVSP  195 (207)
Q Consensus       192 ~~l~  195 (207)
                      ++|.
T Consensus       179 ~~Li  182 (300)
T PHA02884        179 KILV  182 (300)
T ss_pred             HHHH
Confidence            6553

>KOG0512|consensus

Probab=99.76  E-value=9.7e-18  Score=111.12  Aligned_cols=147  Identities=24%  Similarity=0.272  Sum_probs=118.1

Q ss_pred             hhhhhhhccCCchHH-HHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH-
Q psy14140         53 GKLHGCTCRKGESTK-VRDQGV-DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME-  128 (207)
Q Consensus        53 ~~~~a~~~~~~~~~~-ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~-  128 (207)
                      .+++|+..+.-..++ |++..+ .+|.+|.+|.||||.|+.+|+.++++.|+..|++. .+...|+||||.||...+.+ 
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            345666666544444 665544 58999999999999999999999999999999999 99999999999999998887 


Q ss_pred             ---HhhcCCCCCCCCCCCCcHHHHHHHCC-CHHHHHHHH-HhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHh
Q psy14140        129 ---VRDQGVDPNLKDGDGATPLHFAASRG-HADCVRWLL-RYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL  201 (207)
Q Consensus       129 ---l~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll-~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll  201 (207)
                         ++..|++++.......||||+++... ....+++|+ .++..+ .++..+.||+..|-+.+-.+.  ++.+++...
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~--lfe~~e~~~  222 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHY--LFEIVEGCM  222 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHH--HHHHHHHHh
Confidence               67899999999888899999998664 456677775 567788 788999999999988764432  245555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.9e-18  Score=116.90  Aligned_cols=126  Identities=18%  Similarity=0.219  Sum_probs=102.3

Q ss_pred             CCCchhhcccchhhhhhhccCCchHHHH-hcCC--C-----CCCCCCCCCCHHHHHHHcCCH---HHHHHHHHhCCCc-C
Q psy14140         42 LPDYHEEAKLHGKLHGCTCRKGESTKVR-DQGV--D-----PNLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKL-V  109 (207)
Q Consensus        42 ~~~~~~~~~~~~~~~a~~~~~~~~~~ll-~~g~--~-----~~~~~~~g~t~l~~a~~~~~~---~~~~~Ll~~~~~~-~  109 (207)
                      ..+..+..|.+|+++|+..++  +..++ ..+.  +     ++..|..|.||||+|+..++.   +++++|++.|+++ .
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            345566778999999998876  33322 2222  2     234688999999999999886   4689999999999 7


Q ss_pred             CC-CCCCcHHHHHHhcChHH----Hhh-cCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        110 PD-KFGKSPINDAAENQQME----VRD-QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       110 ~~-~~g~~~l~~a~~~~~~~----l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      ++ ..|.||||+|+..++.+    ++. .+++++..+..|.||||+|+..++.+++++|+++|+++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            76 58999999999999887    444 58999999999999999999999999999999998765

>KOG0195|consensus

Probab=99.75  E-value=4.1e-18  Score=121.71  Aligned_cols=114  Identities=30%  Similarity=0.479  Sum_probs=85.1

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC
Q psy14140         70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA  144 (207)
Q Consensus        70 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~  144 (207)
                      +..-|.|.-|..|.+|||+||+.|+..+++.|+..|+.+ ..+....||||.|+.+|+.+    ++...++++..+..|+
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            444566777777777777777777777777777777777 66666677777777777766    4456777777777888


Q ss_pred             cHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       145 t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      ||||+||..|+-.+.+-|+..|+.+ ..+++|.|||..|.
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            8888888877777777777777777 67777888777554

>KOG0505|consensus

Probab=99.75  E-value=2.2e-18  Score=131.88  Aligned_cols=178  Identities=25%  Similarity=0.372  Sum_probs=140.6

Q ss_pred             eehccCChhHHHHHhhccch-----------------hhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-H
Q psy14140          7 IRAVSGDVKCSSQAGSMGDR-----------------LMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-V   68 (207)
Q Consensus         7 ~Aa~~g~~~~~~~~~~~~~~-----------------~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-l   68 (207)
                      -|+..|+.+=|..++..+..                 ..+.+||++++++|+++|..+..+++|++.|+.|++..++. +
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             hccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHH
Confidence            45666666666666554433                 11247899999999999999999999999999999998877 7


Q ss_pred             HhcCCCCCCCCCCCCCHHHHHHH-------------cC-C------------H-HHHHHHHHhCCCc-CCCCCCCcHHHH
Q psy14140         69 RDQGVDPNLKDGDGATPLHFAAS-------------RG-H------------A-DCVRWLLRYGGKL-VPDKFGKSPIND  120 (207)
Q Consensus        69 l~~g~~~~~~~~~g~t~l~~a~~-------------~~-~------------~-~~~~~Ll~~~~~~-~~~~~g~~~l~~  120 (207)
                      +++|+++...+..|..|...+-.             .| .            + ++-+++ ..|... .....|.|.+|.
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~~d~~~~rG~T~lHv  204 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAELDARHARGATALHV  204 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hccccccccccccchHHHH
Confidence            89999988888777777433211             11 0            1 222333 356555 566669999999


Q ss_pred             HHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHc
Q psy14140        121 AAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  185 (207)
Q Consensus       121 a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~  185 (207)
                      |+..|..+    |+..|.+++.+|.+|+||||.|+..|..+.++.|+++|+++ .....|.||+.+|...
T Consensus       205 Aaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  205 AAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            99999877    67899999999999999999999999999999999999999 6888999999988774

>KOG0507|consensus

Probab=99.75  E-value=1.7e-17  Score=131.66  Aligned_cols=167  Identities=24%  Similarity=0.306  Sum_probs=146.2

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      +|||+||.+|+.++                ++.++..+..+|.....+.+|++.++..++.+++. |+.+|+|+-..+..
T Consensus        84 ~plhlaaw~g~~e~----------------vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns  147 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEI----------------VKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNS  147 (854)
T ss_pred             ceEEehhhcCcchH----------------HHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcc
Confidence            79999999999996                66777777788999999999999988888888776 78999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc---------CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL---------VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLH  148 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~  148 (207)
                      +.|++-+|++.|..++++.|++.....         .++..+.+|+|.|+.+|+.+    +++.|.+++.....| |+||
T Consensus       148 ~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talh  226 (854)
T KOG0507|consen  148 KETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALH  226 (854)
T ss_pred             cccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhh
Confidence            999999999999999999998773322         34556788999999999987    568999999877666 6999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        149 FAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      .|+..|..+++.+|++.|.+. .++.+|+|+|..-...-
T Consensus       227 eaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  227 EAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcc
Confidence            999999999999999999999 79999999998776653

>KOG4369|consensus

Probab=99.71  E-value=1.7e-17  Score=136.49  Aligned_cols=200  Identities=19%  Similarity=0.217  Sum_probs=153.3

Q ss_pred             CCCcceeehccCChhHHHHHhhccchhhH-----------------HHHHHHHHHcCCCCCchhh-cccchhhhhhhccC
Q psy14140          1 MAHPLFIRAVSGDVKCSSQAGSMGDRLML-----------------SNCLSLLVQHGTLPDYHEE-AKLHGKLHGCTCRK   62 (207)
Q Consensus         1 ~~tpl~~Aa~~g~~~~~~~~~~~~~~~~~-----------------~~~v~~ll~~g~~~~~~~~-~~~~~~~~a~~~~~   62 (207)
                      +.|+|-+||..|+.|.|..++..+.....                 ..+|+.|+++.++++.+.. ++.+++-++|..+.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr  836 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR  836 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence            35899999999999998887776544221                 2567888888877766543 56677777777777


Q ss_pred             CchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc---CCCCCCCcHHHHHHhcChHH----HhhcCC
Q psy14140         63 GESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL---VPDKFGKSPINDAAENQQME----VRDQGV  134 (207)
Q Consensus        63 ~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~g~~~l~~a~~~~~~~----l~~~~~  134 (207)
                      .+++. |+..|++-..++-...||+.+|...|..++++.|+..|..+   .-.+.|-.||..+..+|+..    +++.|.
T Consensus       837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence            77666 56778777777777778888888888888888888888666   45566788888888888765    667888


Q ss_pred             CCCCCCC-CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        135 DPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       135 ~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ++|..-. +.+|+|.+|+..|+.+.+.+||.+.+++ .+.+.|-|||+-++..|..|+.      +.|++.|+|
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg------~~li~~gad  984 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVG------NLLIAAGAD  984 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccc------hhhhhcccc
Confidence            8887644 5668888999999999999898888888 7888889999999999988884      455666654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=4e-16  Score=102.16  Aligned_cols=117  Identities=43%  Similarity=0.722  Sum_probs=103.7

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHH
Q psy14140         77 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAA  151 (207)
Q Consensus        77 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~  151 (207)
                      ..+..|.|||++|++.++.+++++|++.+... ..+..|.+|+|.|+..+..+    ++..+..++..+..|.||+|.|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            34578999999999999999999999999886 88889999999999998876    45678788888889999999999


Q ss_pred             HCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        152 SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       152 ~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                      ..++.+++++|++++.+. ..+..+.||++.|...++.+++++
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  124 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL  124 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHH
Confidence            999999999999999888 678889999999999988777544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512|consensus

Probab=99.68  E-value=3.4e-16  Score=103.87  Aligned_cols=125  Identities=19%  Similarity=0.219  Sum_probs=108.3

Q ss_pred             HHHHHHHHcCC-CCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         31 NCLSLLVQHGT-LPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        31 ~~v~~ll~~g~-~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      ..|+.|++..+ .+|.+|+.+.+|++-|++.++..++. |+..|++++.+...|+||||-||..++.+++..|+++|+++
T Consensus        77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV  156 (228)
T ss_pred             HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcc
Confidence            34666666554 56999999999999999999988887 78999999999999999999999999999999999999999


Q ss_pred             -CCCCCCCcHHHHHHhcChHH------HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140        109 -VPDKFGKSPINDAAENQQME------VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus       109 -~~~~~g~~~l~~a~~~~~~~------l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                       .......||||.++...+..      +...++++...+..+.||+.+|-+-+.
T Consensus       157 nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  157 NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence             77788899999998766543      346788888899999999999988754

>KOG4369|consensus

Probab=99.67  E-value=9.7e-17  Score=132.12  Aligned_cols=199  Identities=19%  Similarity=0.206  Sum_probs=161.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchh---h--------------HHHHHHHHHHcCCCCCchh--hcccchhhhhhhccC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRL---M--------------LSNCLSLLVQHGTLPDYHE--EAKLHGKLHGCTCRK   62 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~---~--------------~~~~v~~ll~~g~~~~~~~--~~~~~~~~~a~~~~~   62 (207)
                      .|+|.+||..|..++|..|+..+...   .              ..+++..|+.+|..+|.+.  ..+..|+++|.+.++
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            48899999999999999888755441   1              1389999999998887665  456788899888888


Q ss_pred             CchHH-HHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCC
Q psy14140         63 GESTK-VRDQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVD  135 (207)
Q Consensus        63 ~~~~~-ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~  135 (207)
                      ..... |++.|-|+|.. .-..+|+|.+|+..|..+++..|+...+.+ .+-+.|-|||.-++..|..+    |+..|+|
T Consensus       905 ~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  905 QAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             cHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            66555 78999999976 346779999999999999999999999988 88899999999999999876    6788888


Q ss_pred             CCCCCC--CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        136 PNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       136 ~~~~~~--~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      .+..-.  ...|+|.+++..|+...+..|+...+.+ .++++|+|+|++|+..|++..      +..|++.+++
T Consensus       985 ~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss------~~il~~~~ad 1052 (2131)
T KOG4369|consen  985 TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSS------CPILVSSVAD 1052 (2131)
T ss_pred             cccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCcccc------chHHhhcccC
Confidence            886532  3448888999999999999998888888 789999999999999998877      4455555544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=9.2e-16  Score=94.80  Aligned_cols=81  Identities=36%  Similarity=0.630  Sum_probs=61.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140         86 LHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus        86 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                      ||+|++.++.+++++|++.+.+...   |.||+|+|+..++.+    +++.|.+++..+..|+||||+|+..++.+++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~   77 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL---GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKL   77 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS---SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC---CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            6889999999999999997765511   677777777777766    456777777777788888888888888888888


Q ss_pred             HHHhCCCc
Q psy14140        162 LLRYGGKL  169 (207)
Q Consensus       162 Ll~~g~~~  169 (207)
                      |+++|+++
T Consensus        78 Ll~~g~~~   85 (89)
T PF12796_consen   78 LLEHGADV   85 (89)
T ss_dssp             HHHTTT-T
T ss_pred             HHHcCCCC
Confidence            88877776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.66  E-value=2.8e-16  Score=112.43  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=105.9

Q ss_pred             HHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCC
Q psy14140         36 LVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF  113 (207)
Q Consensus        36 ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~  113 (207)
                      |-+...+.|..|..+..|++++|..|+..++. |+..|+.+|..+....||||+|+..||-++++.|+++.+++ ..+..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence            33455788999999999999999999988776 78999999999999999999999999999999999999999 99999


Q ss_pred             CCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHH
Q psy14140        114 GKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAAS  152 (207)
Q Consensus       114 g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~  152 (207)
                      |.|||||||..|.-.    ++..|+.++..+..|.||+..|.-
T Consensus       100 gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            999999999999754    788999999999999999987643

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=3.6e-16  Score=96.63  Aligned_cols=84  Identities=29%  Similarity=0.421  Sum_probs=70.7

Q ss_pred             ceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCC
Q psy14140          5 LFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGA   83 (207)
Q Consensus         5 l~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~   83 (207)
                      ||+||.+|+.++                +++|++.+.+++.    +.+|+++|+..++.++.. |++.|++++.+|..|.
T Consensus         1 L~~A~~~~~~~~----------------~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~   60 (89)
T PF12796_consen    1 LHIAAQNGNLEI----------------LKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGN   60 (89)
T ss_dssp             HHHHHHTTTHHH----------------HHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSS
T ss_pred             CHHHHHcCCHHH----------------HHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCC
Confidence            688999999985                7778887877776    667999999888887776 7799999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         84 TPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        84 t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      ||||+|+..++.+++++|++.|.++
T Consensus        61 t~L~~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   61 TALHYAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             BHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.62  E-value=3.5e-15  Score=119.70  Aligned_cols=93  Identities=25%  Similarity=0.326  Sum_probs=82.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCC--CCCCCCCCCc
Q psy14140         73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVD--PNLKDGDGAT  145 (207)
Q Consensus        73 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~--~~~~~~~g~t  145 (207)
                      ++....-..|..||.+|++-++.+++++|+++|+++ .+|+.|.|.||..+.+...+    +++.|++  ....|..|-|
T Consensus       231 T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLT  310 (782)
T KOG3676|consen  231 TNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLT  310 (782)
T ss_pred             cCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCC
Confidence            333333456899999999999999999999999999 99999999999998886665    4578888  8888999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHh
Q psy14140        146 PLHFAASRGHADCVRWLLRY  165 (207)
Q Consensus       146 ~l~~a~~~~~~~~~~~Ll~~  165 (207)
                      ||.+|++-|..++.++++++
T Consensus       311 PLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  311 PLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999988

>KOG3676|consensus

Probab=99.62  E-value=4.7e-15  Score=118.97  Aligned_cols=166  Identities=22%  Similarity=0.183  Sum_probs=129.3

Q ss_pred             CCCCchhhcccchhhhhhhccCCchH---H-HHhcCCC-CC----CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC
Q psy14140         41 TLPDYHEEAKLHGKLHGCTCRKGEST---K-VRDQGVD-PN----LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP  110 (207)
Q Consensus        41 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~-ll~~g~~-~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~  110 (207)
                      -+.+.++..|.+.++.+.-+.+....   . |++.-.. +|    .-...|.||||+|+.+.+.+++++|++.|+++ .+
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            34566678888888877665544332   2 3322111 11    12347999999999999999999999999988 21


Q ss_pred             -----------------------CCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q psy14140        111 -----------------------DKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL  163 (207)
Q Consensus       111 -----------------------~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  163 (207)
                                             -.+|..||..|+..++.+    +++.|+|++.+|..|+|.||..+..-..++..+++
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence                                   125789999999988887    56899999999999999999999998899999999


Q ss_pred             HhCCC--c-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        164 RYGGK--L-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       164 ~~g~~--~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ++|++  . .+|+.|-|||-+|++.|..++.+.+-+.++..++...
T Consensus       294 ~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YG  339 (782)
T KOG3676|consen  294 ELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYG  339 (782)
T ss_pred             hcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeec
Confidence            99999  5 7999999999999999999997666555444444433

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.55  E-value=1.9e-13  Score=89.38  Aligned_cols=118  Identities=39%  Similarity=0.598  Sum_probs=102.3

Q ss_pred             hhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHh
Q psy14140         46 HEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  123 (207)
Q Consensus        46 ~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~  123 (207)
                      .+..|.+|++.|+..++..+.. +++.+.+.+..+..|.+|++.|+..++.+++++|++.+... ..+..|.+|+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            3456788999998888876665 77999888899999999999999999999999999999777 778899999999999


Q ss_pred             cChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH
Q psy14140        124 NQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL  163 (207)
Q Consensus       124 ~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  163 (207)
                      .++.+    ++..+.+.+..+..+.||++.|...++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99877    45677778888899999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=1.7e-14  Score=80.70  Aligned_cols=54  Identities=43%  Similarity=0.690  Sum_probs=31.6

Q ss_pred             HHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHH
Q psy14140         68 VRDQG-VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA  121 (207)
Q Consensus        68 ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a  121 (207)
                      |++.| .+++.+|..|.||||+|++.|+.+++++|++.|.++ .+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46677 899999999999999999999999999999999988 8999999999876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=3e-13  Score=97.52  Aligned_cols=121  Identities=37%  Similarity=0.559  Sum_probs=94.9

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcCh-----HH----HhhcCC---CCCCCCC
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ-----ME----VRDQGV---DPNLKDG  141 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~-----~~----l~~~~~---~~~~~~~  141 (207)
                      ....+..+.++++.++..+...++++++..+.++ .++..|.||+|+|+..++     .+    +++.|.   ..+..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            3445556778888888888888888888888887 888888888888888877     44    556777   5555688


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHH
Q psy14140        142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSP  195 (207)
Q Consensus       142 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~  195 (207)
                      .|.||||+|+..|+.++++.|++.|+++ ..+..|.|++++|+..++.+++..+.
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHH
Confidence            8888888888888888888888888888 57788888888888888888755543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=3.1e-14  Score=79.68  Aligned_cols=53  Identities=43%  Similarity=0.691  Sum_probs=32.3

Q ss_pred             hhcC-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHH
Q psy14140        130 RDQG-VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA  182 (207)
Q Consensus       130 ~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a  182 (207)
                      ++.+ .+++..|..|.||||+|+..|+.+++++|++.|+++ .++..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4555 789999999999999999999999999999999999 7999999999987

>KOG4214|consensus

Probab=99.46  E-value=4.7e-13  Score=79.79  Aligned_cols=97  Identities=28%  Similarity=0.375  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140         85 PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus        85 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      .+.++.++|.++-++-.+..|.++.....|++|||+|+..|+.+    ++..|++++.+|..|-|||.-|.+.||.+|++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            34556667777766666666655533346677777777777665    34567788889999999999999999999999


Q ss_pred             HHHHhCCCc-cCCCCCCCHHHH
Q psy14140        161 WLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       161 ~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      +|++.|++. .....|.+.+..
T Consensus        85 lLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHcCcccceeCCCchhHHhh
Confidence            999999998 466667666653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=2e-12  Score=93.23  Aligned_cols=122  Identities=30%  Similarity=0.434  Sum_probs=107.8

Q ss_pred             chhhcccchhhhhhhccCCchH-HHHhcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHhCC--Cc--CCCCCC
Q psy14140         45 YHEEAKLHGKLHGCTCRKGEST-KVRDQGVDPNLKDGDGATPLHFAASRGH-----ADCVRWLLRYGG--KL--VPDKFG  114 (207)
Q Consensus        45 ~~~~~~~~~~~~a~~~~~~~~~-~ll~~g~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~--~~--~~~~~g  114 (207)
                      ..+.....+++.++..+...+. .++..|++++..+..|.||+|+|+..++     .++++.|++.|.  ..  ..+..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            4444566777777777777776 5889999999999999999999999999     999999999999  34  779999


Q ss_pred             CcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q psy14140        115 KSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  166 (207)
Q Consensus       115 ~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  166 (207)
                      .||+|+|+..+..+    +++.+.+++..+..|.|+++.++..++.+.++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999876    56789999999999999999999999999999999865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=3.5e-13  Score=74.97  Aligned_cols=52  Identities=35%  Similarity=0.642  Sum_probs=40.8

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        143 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       143 g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      |+|++|.|++.|+.+++++|+++|.++ ..|..|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            679999999999999999999999999 5788899999999999998886654

...

>KOG0515|consensus

Probab=99.38  E-value=1.3e-12  Score=100.72  Aligned_cols=72  Identities=25%  Similarity=0.417  Sum_probs=48.5

Q ss_pred             hhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcCh
Q psy14140         55 LHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ  126 (207)
Q Consensus        55 ~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~  126 (207)
                      +.|+..|..++++ .+..-.|++..+..|.|+||-|++.||+++|++|+++|+++ ..|.+|+||||.|+..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc
Confidence            4455555555555 55666678888888888888888888888888888887755 555555555555444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.37  E-value=1.1e-12  Score=108.24  Aligned_cols=102  Identities=27%  Similarity=0.379  Sum_probs=85.2

Q ss_pred             cceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCC
Q psy14140          4 PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDG   82 (207)
Q Consensus         4 pl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g   82 (207)
                      +|+.|+.+|+.+                +++.|+++|+++|..+..+.+|+++|+..++..+.. |++.|++++..|..|
T Consensus        85 ~L~~aa~~G~~~----------------~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G  148 (664)
T PTZ00322         85 ELCQLAASGDAV----------------GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG  148 (664)
T ss_pred             HHHHHHHcCCHH----------------HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            356666666665                588899999999999999999999999999988877 779999999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHh-------CCCc-CCCCCCCcHHHHH
Q psy14140         83 ATPLHFAASRGHADCVRWLLRY-------GGKL-VPDKFGKSPINDA  121 (207)
Q Consensus        83 ~t~l~~a~~~~~~~~~~~Ll~~-------~~~~-~~~~~g~~~l~~a  121 (207)
                      .||||+|+..++.+++++|+++       +++. ..+..|.+|+..+
T Consensus       149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999999999999999999988       6666 5555566665443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.37  E-value=3e-12  Score=71.15  Aligned_cols=54  Identities=52%  Similarity=0.867  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                      |.||||+|++.|+.+++++|++.|.                            +++..|.+|.||||+|+..|+.+++++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~----------------------------din~~d~~g~t~lh~A~~~g~~~~~~~   52 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA----------------------------DINAQDEDGRTPLHYAAKNGNIDIVKF   52 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS----------------------------GTT-B-TTS--HHHHHHHTT-HHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC----------------------------CCCCCCCCCCCHHHHHHHccCHHHHHH
Confidence            5788888888888888888888765                            455556677777777777777777777


Q ss_pred             HH
Q psy14140        162 LL  163 (207)
Q Consensus       162 Ll  163 (207)
                      |+
T Consensus        53 Ll   54 (54)
T PF13637_consen   53 LL   54 (54)
T ss_dssp             HH
T ss_pred             HC
Confidence            64

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=7e-12  Score=103.62  Aligned_cols=97  Identities=33%  Similarity=0.453  Sum_probs=64.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140         86 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus        86 l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      |+.|+..|+.+.++.|++.|+++ .+|..|.||||+|+..++.+    |++.|++++..|..|.||||+|+..++.++++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~  165 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQ  165 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            55666666666666666666666 66666666666666666655    44566677777777777777777777777777


Q ss_pred             HHHHh-------CCCc-cCCCCCCCHHHHH
Q psy14140        161 WLLRY-------GGKL-VPDKFGKSPINDA  182 (207)
Q Consensus       161 ~Ll~~-------g~~~-~~~~~g~t~l~~a  182 (207)
                      +|+++       |++. ..+..|.+|+...
T Consensus       166 ~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        166 LLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHhCCCcccccCCCCCccccCCCCccchh
Confidence            77776       5555 3444455555433

>KOG4214|consensus

Probab=99.36  E-value=3e-12  Score=76.39  Aligned_cols=86  Identities=23%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             HHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC
Q psy14140         33 LSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP  110 (207)
Q Consensus        33 v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~  110 (207)
                      |+.....|.++|-.- .+.+|+++|+-+++-.+.. ++..|++++.+|+.|.|||.-|.+.||.+++++|++.|++- ..
T Consensus        18 Vk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   18 VKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCccccee
Confidence            444444454443322 5567777777777766655 66778888888888888888888888888888888887766 55


Q ss_pred             CCCCCcHHH
Q psy14140        111 DKFGKSPIN  119 (207)
Q Consensus       111 ~~~g~~~l~  119 (207)
                      ..+|.+.+.
T Consensus        97 ~PdG~~~~e  105 (117)
T KOG4214|consen   97 APDGTALIE  105 (117)
T ss_pred             CCCchhHHh
Confidence            555544443

>KOG0515|consensus

Probab=99.32  E-value=7.7e-13  Score=101.87  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--
Q psy14140         32 CLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--  108 (207)
Q Consensus        32 ~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--  108 (207)
                      +|+-.+..--|+..-+..|.+++|-|.-.++-.++. |++.|+++|..|++|+||||+|++.++..+++.|++.|+.+  
T Consensus       565 lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  565 LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe
Confidence            455555566667777788899999876666666665 88999999999999999999999999999999999999988  


Q ss_pred             CCCCCCCcHHHHH
Q psy14140        109 VPDKFGKSPINDA  121 (207)
Q Consensus       109 ~~~~~g~~~l~~a  121 (207)
                      .+-.++.|+....
T Consensus       645 sTlSDmeTa~eKC  657 (752)
T KOG0515|consen  645 STLSDMETAAEKC  657 (752)
T ss_pred             eecccccchhhhc
Confidence            5556677776543

>KOG1710|consensus

Probab=99.26  E-value=4.5e-11  Score=85.94  Aligned_cols=96  Identities=26%  Similarity=0.303  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCC
Q psy14140         68 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDG  141 (207)
Q Consensus        68 ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~  141 (207)
                      |+..--++|..|..|.++|.-|+..|+.++++.|++.|+++  .....+.|||+.|+..|+.+    +++.|+..+..+.
T Consensus        31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs  110 (396)
T KOG1710|consen   31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS  110 (396)
T ss_pred             HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccc
Confidence            44443346666666667766666666777777776666666  45555666666666666554    4566777777777


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHH
Q psy14140        142 DGATPLHFAASRGHADCVRWLL  163 (207)
Q Consensus       142 ~g~t~l~~a~~~~~~~~~~~Ll  163 (207)
                      -|+|+-.+|+.-|+.+|+..+-
T Consensus       111 vgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  111 VGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hhhhHHHHHHHhcchHHHHHHh
Confidence            7888888888888777776553

>KOG1710|consensus

Probab=99.22  E-value=8.7e-11  Score=84.47  Aligned_cols=112  Identities=28%  Similarity=0.332  Sum_probs=100.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCC-CCCCCcHHHHHHHCCCH
Q psy14140         83 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLK-DGDGATPLHFAASRGHA  156 (207)
Q Consensus        83 ~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~-~~~g~t~l~~a~~~~~~  156 (207)
                      ..||.-+.-.+..+-...|++.--.+ .+|..|.++|..|+..|+.+    +++.|+|+|.. +..+.|||++|+-.|..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            46888888889998888888875555 89999999999999999987    56899999864 56788999999999999


Q ss_pred             HHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        157 DCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       157 ~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ++.+.|++.|+.+ ..+.-|+|+-..|+..|+++||.++
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999 7899999999999999999999876

>KOG0818|consensus

Probab=99.05  E-value=1.1e-09  Score=84.14  Aligned_cols=82  Identities=23%  Similarity=0.363  Sum_probs=64.0

Q ss_pred             HHHHHhcChHH----HhhcCCCCCCCCC-CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCccee
Q psy14140        118 INDAAENQQME----VRDQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVS  191 (207)
Q Consensus       118 l~~a~~~~~~~----l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~  191 (207)
                      ||.+++.++.+    ++..|+++|..+. .|.||||.|++.|...-+++|+-+|+++ ..|.+|.||+.+|-..|+.+++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            77777777766    6677888887765 5788888888888888888888888888 6888888888888888888886


Q ss_pred             ehHHHHHH
Q psy14140        192 TVSPVVRR  199 (207)
Q Consensus       192 ~~l~~~~~  199 (207)
                      +-|-+..+
T Consensus       217 eRl~e~~y  224 (669)
T KOG0818|consen  217 ERLVEIQY  224 (669)
T ss_pred             HHHHHHHH
Confidence            65544433

>KOG0783|consensus

Probab=98.85  E-value=1.2e-09  Score=88.73  Aligned_cols=82  Identities=39%  Similarity=0.582  Sum_probs=56.6

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCC-CCCcHHHHHHHC
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDG-DGATPLHFAASR  153 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~  153 (207)
                      .|.+|..|+|++|++++.+..++++||+++|.++                            ..+|. .|+||||.|...
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv----------------------------~vqD~ESG~taLHRaiyy   96 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV----------------------------FVQDEESGYTALHRAIYY   96 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee----------------------------eeccccccchHhhHhhhh
Confidence            5778888999999999999999999999888765                            22332 455666666666


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHH
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~  184 (207)
                      |+.+|+-.|+++|+.. .+|+.|..||...++
T Consensus        97 G~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   97 GNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             chHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            6666666666666555 566666666655555

>KOG0506|consensus

Probab=98.76  E-value=4.8e-09  Score=80.35  Aligned_cols=89  Identities=29%  Similarity=0.396  Sum_probs=77.6

Q ss_pred             CCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCc-cCCCCCCCHHHHHHH
Q psy14140        111 DKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       111 ~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~-~~~~~g~t~l~~a~~  184 (207)
                      +.++..++.+|+..|...    +.-.|.|++..|.+.+|+||.|+..|+.+++++|++. +.++ .+|.+|+|||+-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            445666789999999876    4568999999999999999999999999999999975 5677 699999999999999


Q ss_pred             cCCcceeehHHHHHH
Q psy14140        185 NQQMEVSTVSPVVRR  199 (207)
Q Consensus       185 ~~~~~~~~~l~~~~~  199 (207)
                      -++.+++++|.....
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999998876543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.75  E-value=1.8e-08  Score=48.34  Aligned_cols=28  Identities=46%  Similarity=0.860  Sum_probs=25.0

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        142 DGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       142 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      +|+||||+|++.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4889999999999999999999998876

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=2.2e-08  Score=47.99  Aligned_cols=28  Identities=46%  Similarity=0.860  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      +|+||||+||+.|+.+++++|++.|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999865

>KOG0818|consensus

Probab=98.72  E-value=9.3e-08  Score=73.85  Aligned_cols=153  Identities=21%  Similarity=0.253  Sum_probs=108.7

Q ss_pred             CChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhcc-----------CCchHH----HHhcCCCCC
Q psy14140         12 GDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCR-----------KGESTK----VRDQGVDPN   76 (207)
Q Consensus        12 g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~-----------~~~~~~----ll~~g~~~~   76 (207)
                      -++++|+.|..........++|.-|-.+|++.-+.... ..+.-.....+           ..++..    .+..-....
T Consensus        43 rhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~L-ld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~  121 (669)
T KOG0818|consen   43 RHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHSL-LDPATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLP  121 (669)
T ss_pred             chHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhhc-cCchhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCC
Confidence            35677788887777777788999999999865332211 11110000000           001111    222222345


Q ss_pred             CCCCCCCCH------HHHHHHcCCHHHHHHHHHhCCCc--CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC
Q psy14140         77 LKDGDGATP------LHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA  144 (207)
Q Consensus        77 ~~~~~g~t~------l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~  144 (207)
                      .+|.+|.+.      ||-.++.++.++.-.|+..|++.  .-...|.||||.|++.|+..    |+-+|+|++..|.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            666666554      78889999999998999999998  66678999999999999764    5679999999999999


Q ss_pred             cHHHHHHHCCCHHHHHHHHHh
Q psy14140        145 TPLHFAASRGHADCVRWLLRY  165 (207)
Q Consensus       145 t~l~~a~~~~~~~~~~~Ll~~  165 (207)
                      ||+.+|-..||.++.+-|++.
T Consensus       202 tP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHH
Confidence            999999999998888777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=6e-08  Score=47.74  Aligned_cols=31  Identities=55%  Similarity=0.973  Sum_probs=27.7

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCC
Q psy14140        142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPD  172 (207)
Q Consensus       142 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~  172 (207)
                      +|.||||+|+..|+.+++++|+++|+++ .++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5889999999999999999999999998 444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=1.1e-07  Score=46.79  Aligned_cols=28  Identities=57%  Similarity=1.031  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      +|.||||+|+..++.+++++|++.|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            4889999999999999999999999887

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.56  E-value=9.6e-08  Score=75.11  Aligned_cols=104  Identities=24%  Similarity=0.343  Sum_probs=70.8

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHH
Q psy14140         70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF  149 (207)
Q Consensus        70 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~  149 (207)
                      ..|-++-.++.+-.+.||+|++.|+-++++|++++|...                          -++..|..|.|+||-
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e--------------------------lld~~de~get~lhk  940 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE--------------------------LLDMADETGETALHK  940 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH--------------------------HHHHHhhhhhHHHHH
Confidence            344455555666667777777777777777777766532                          123345677777777


Q ss_pred             HHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHH
Q psy14140        150 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRR  199 (207)
Q Consensus       150 a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~  199 (207)
                      |+-.++--+..+|++.|+.. ..|..|.||-.-|-+.|.++.+.+|+..+.
T Consensus       941 aa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  941 AACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            77777777777778888777 567778888888888888887777755443

>KOG0522|consensus

Probab=98.50  E-value=2.8e-07  Score=71.82  Aligned_cols=76  Identities=26%  Similarity=0.446  Sum_probs=58.2

Q ss_pred             HHHHHHhcChHH------HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcc
Q psy14140        117 PINDAAENQQME------VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  189 (207)
Q Consensus       117 ~l~~a~~~~~~~------l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~  189 (207)
                      |+|++......+      ..+....++..|..|+||||+|+..|+.+.++.|+..|+++ .+++.|++|||.|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            366665544333      12344567778888899999999999999999999999888 78889999999999998886


Q ss_pred             eee
Q psy14140        190 VST  192 (207)
Q Consensus       190 ~~~  192 (207)
                      ++.
T Consensus       103 ~i~  105 (560)
T KOG0522|consen  103 IIT  105 (560)
T ss_pred             HHH
Confidence            644

>KOG0705|consensus

Probab=98.42  E-value=1.4e-06  Score=68.81  Aligned_cols=82  Identities=26%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             HHHHcCCHHHHHHHHHhCCCc-----CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHH
Q psy14140         88 FAASRGHADCVRWLLRYGGKL-----VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADC  158 (207)
Q Consensus        88 ~a~~~~~~~~~~~Ll~~~~~~-----~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  158 (207)
                      -|..-.+...+-.|+.+|...     ..+.+|.|+||.|++.|+..    |+-+|+|+...|..|+|+|.+|-+.|.-+|
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec  709 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQEC  709 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHH
Confidence            344455566666777776544     44556677888887777755    456788888888888888888888888888


Q ss_pred             HHHHHHhCCCc
Q psy14140        159 VRWLLRYGGKL  169 (207)
Q Consensus       159 ~~~Ll~~g~~~  169 (207)
                      +..|+++|...
T Consensus       710 ~d~llq~gcp~  720 (749)
T KOG0705|consen  710 IDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHcCCCc
Confidence            88888877544

>KOG0783|consensus

Probab=98.40  E-value=2.8e-07  Score=75.51  Aligned_cols=89  Identities=24%  Similarity=0.296  Sum_probs=77.2

Q ss_pred             HHHHcCCC-CCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC
Q psy14140         35 LLVQHGTL-PDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VP  110 (207)
Q Consensus        35 ~ll~~g~~-~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~  110 (207)
                      ++.+++.+ .|+.|.-|.++++.++.++...+.. |+++|++++.+|. .|+||||.|...|+++++-.|+.+|... ..
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~  115 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK  115 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe
Confidence            34444432 4888889999999999988877765 9999999999987 5999999999999999999999999988 99


Q ss_pred             CCCCCcHHHHHHh
Q psy14140        111 DKFGKSPINDAAE  123 (207)
Q Consensus       111 ~~~g~~~l~~a~~  123 (207)
                      |..|..||...++
T Consensus       116 Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSR  128 (1267)
T ss_pred             cccCCCHHHHHhh
Confidence            9999999998876

>KOG0506|consensus

Probab=98.30  E-value=1e-06  Score=67.96  Aligned_cols=86  Identities=29%  Similarity=0.327  Sum_probs=75.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHh-----hcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR-----DQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~-----~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      ++..++.+|++.|+...++.+.-.|.++ .+|.+.+|+||.|+-.|+.+++     ..+.+++.+|..|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            4667789999999999999888888888 9999999999999999988744     357889999999999999999999


Q ss_pred             CHHHHHHHHHhC
Q psy14140        155 HADCVRWLLRYG  166 (207)
Q Consensus       155 ~~~~~~~Ll~~g  166 (207)
                      +.+++++|-+..
T Consensus       585 h~~v~k~L~~~~  596 (622)
T KOG0506|consen  585 HKEVVKLLEEAQ  596 (622)
T ss_pred             cHHHHHHHHHHh
Confidence            999999987654

>KOG0705|consensus

Probab=98.25  E-value=1.7e-06  Score=68.25  Aligned_cols=63  Identities=29%  Similarity=0.432  Sum_probs=56.1

Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ..+.+|+|+||+||+.|+....++|+=+|+++ .+|.+|+|+|.||-+.|.-||      +..||+.|+.
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec------~d~llq~gcp  719 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQEC------IDVLLQYGCP  719 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHH------HHHHHHcCCC
Confidence            44667899999999999999999999999999 799999999999999999999      5666776654

>KOG0520|consensus

Probab=98.13  E-value=8.7e-06  Score=68.49  Aligned_cols=122  Identities=24%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHH
Q psy14140         76 NLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHF  149 (207)
Q Consensus        76 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~  149 (207)
                      ......|.+.+|+++..+..-.++.+++. +... ..|.+|...+|.++..+..-    +.-.+..++.+|..|+||||+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            34455788999999999999999999886 4433 66777777788755444322    235788899999999999999


Q ss_pred             HHHCCCHHHHHHHHHhCCCc--c-----CCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        150 AASRGHADCVRWLLRYGGKL--V-----PDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       150 a~~~~~~~~~~~Ll~~g~~~--~-----~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      |..+|+..++..|.+.|++.  .     ....|.|+-..|..+|+..+.-+|.+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999887766  1     234589999999999999998888654

>KOG2384|consensus

Probab=98.12  E-value=4.1e-06  Score=57.20  Aligned_cols=57  Identities=21%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             CCCCCCCcHHHHHHhcChHH----HhhcC-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh
Q psy14140        109 VPDKFGKSPINDAAENQQME----VRDQG-VDPNLKDGDGATPLHFAASRGHADCVRWLLRY  165 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~----l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  165 (207)
                      .+|.+|+|++..|+..|.-+    ++..| +.+...|..+.+++.+|-+.|..+++..|.+.
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            45555666666655555443    34445 55555555555666666666655555555544

>KOG2384|consensus

Probab=98.08  E-value=3.1e-05  Score=53.00  Aligned_cols=59  Identities=25%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCc-CCCCCCCcHHHHHHhcChHHHh
Q psy14140         72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKL-VPDKFGKSPINDAAENQQMEVR  130 (207)
Q Consensus        72 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~-~~~~~g~~~l~~a~~~~~~~l~  130 (207)
                      +.++|..|..|+|++++|+..|+.+.+.||+..| +.+ ..|..+.+++.+|-..|...++
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fv   62 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFV   62 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHH
Confidence            4578999999999999999999999999999999 666 8999999999999999988743

>KOG0522|consensus

Probab=98.04  E-value=2.2e-05  Score=61.59  Aligned_cols=60  Identities=28%  Similarity=0.500  Sum_probs=50.9

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHH
Q psy14140         70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  129 (207)
Q Consensus        70 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l  129 (207)
                      +.+..++..|..|.||||+|+..|+...++.|+..|+++ .++..|++|||-|+..|+.++
T Consensus        43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~  103 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQI  103 (560)
T ss_pred             hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHH
Confidence            455678888888999999999999999999999999888 888888888888888877663

>KOG3609|consensus

Probab=97.93  E-value=3.5e-05  Score=63.76  Aligned_cols=124  Identities=17%  Similarity=0.126  Sum_probs=91.0

Q ss_pred             cchhhhhhhccCCchHH-HH-hc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcC
Q psy14140         51 LHGKLHGCTCRKGESTK-VR-DQ---GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ  125 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll-~~---g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~  125 (207)
                      ..-.+.++..|+...+. .+ +.   ..++|..|.-|+++++.|..+.+.++.++|++.+...      ..+|.+|+..+
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI~~~   99 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAIAVG   99 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHHHHH
Confidence            34456778888876655 44 22   2578899999999999999999999999999986432      56888888888


Q ss_pred             hHHHhh----c----------CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHH
Q psy14140        126 QMEVRD----Q----------GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN  180 (207)
Q Consensus       126 ~~~l~~----~----------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~  180 (207)
                      ..+.++    .          +......-..+-||+.+|+...+.+|+++|+++|+.+ .+....+..-.
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~  169 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKT  169 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchH
Confidence            766332    1          1111122235779999999999999999999999999 66665554443

>KOG3609|consensus

Probab=97.88  E-value=0.00012  Score=60.68  Aligned_cols=93  Identities=14%  Similarity=-0.006  Sum_probs=71.3

Q ss_pred             CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----------
Q psy14140         40 GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL----------  108 (207)
Q Consensus        40 g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~----------  108 (207)
                      ..++|..|..|..+++.|....+.++.. |++++...       ..+|.+|++.+..+.++.++.+....          
T Consensus        52 ~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   52 KLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             ccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence            3678889999999999988888888877 45665544       35889999999999999998875433          


Q ss_pred             -CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCC
Q psy14140        109 -VPDKFGKSPINDAAENQQME----VRDQGVDPNLK  139 (207)
Q Consensus       109 -~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~  139 (207)
                       ..-.-+.||+..|+..++.+    ++..|+.+...
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence             23334789999999999988    45677766543

>KOG0782|consensus

Probab=97.87  E-value=2.4e-05  Score=62.07  Aligned_cols=97  Identities=23%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             HHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         33 LSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVD--PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        33 v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      ++..-.+|.+.-.+++.-.+.+++|+..++++++. ++.+|..  ++..|..|.|+||-|+..++-.+.++|++.|+.. 
T Consensus       882 lqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  882 LQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             HHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe
Confidence            44455678888888888888999999999999887 7888864  5667889999999999999999999999999877 


Q ss_pred             CCCCCCCcHHHHHHhcChHHH
Q psy14140        109 VPDKFGKSPINDAAENQQMEV  129 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~l  129 (207)
                      .+|..|.||-.-|-..+..++
T Consensus       962 ktd~kg~tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  962 KTDSKGKTPQERAQQAGDPDL  982 (1004)
T ss_pred             ecccCCCChHHHHHhcCCchH
Confidence            677777777666655555544

>KOG0521|consensus

Probab=97.86  E-value=1.9e-05  Score=66.40  Aligned_cols=85  Identities=28%  Similarity=0.385  Sum_probs=65.1

Q ss_pred             CCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCC
Q psy14140        113 FGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ  187 (207)
Q Consensus       113 ~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~  187 (207)
                      .|.+++|.|+..+...    ++.+|.+++..|..|++|+|.+...|+...+..|+++|++. ..+..|.+|++.|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            4577888888777644    56788888888888888888888888888888888888888 677778888888877766


Q ss_pred             cceeehHHHH
Q psy14140        188 MEVSTVSPVV  197 (207)
Q Consensus       188 ~~~~~~l~~~  197 (207)
                      .+++.++...
T Consensus       735 ~d~~~l~~l~  744 (785)
T KOG0521|consen  735 ADIVLLLRLA  744 (785)
T ss_pred             ccHHHHHhhh
Confidence            6766555443

>KOG0511|consensus

Probab=97.82  E-value=5.5e-05  Score=57.17  Aligned_cols=73  Identities=26%  Similarity=0.376  Sum_probs=56.1

Q ss_pred             hhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcCh
Q psy14140         54 KLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQ  126 (207)
Q Consensus        54 ~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~  126 (207)
                      +..||..|.-+.+. |++.|+++|..|....+||.+|+-.||..++++|+++|+...++.....-=|+++.+..
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd~  113 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALNDR  113 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhHH
Confidence            45667766655444 88999999999999999999999999999999999999987555544333344444443

>KOG0511|consensus

Probab=97.78  E-value=0.00013  Score=55.22  Aligned_cols=60  Identities=27%  Similarity=0.335  Sum_probs=38.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC
Q psy14140         85 PLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA  144 (207)
Q Consensus        85 ~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~  144 (207)
                      -|..||+.|..+.+++|++.|.++ ..|.+...||.+|+..|+..    +++.|+--+....+|.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            467889999999999999888766 66666666666666555554    3344544443333343

>KOG0521|consensus

Probab=97.66  E-value=6.6e-05  Score=63.21  Aligned_cols=93  Identities=31%  Similarity=0.470  Sum_probs=78.5

Q ss_pred             hcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCC
Q psy14140         70 DQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGD  142 (207)
Q Consensus        70 ~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~  142 (207)
                      ..+++.|...  ..|.|++|.|+..+..-+...|+++|+++ ..|..|++|+|.+...|+..    +++.|++.+..+..
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCcc
Confidence            4455555432  35789999999999999999999999999 99999999999999888755    67899999999999


Q ss_pred             CCcHHHHHHHCCCHHHHHHH
Q psy14140        143 GATPLHFAASRGHADCVRWL  162 (207)
Q Consensus       143 g~t~l~~a~~~~~~~~~~~L  162 (207)
                      |.+++.+|....+.+++-++
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             CcchhhHHhhhccccHHHHH
Confidence            99999999777766666555

>KOG0520|consensus

Probab=97.52  E-value=0.00033  Score=59.41  Aligned_cols=74  Identities=31%  Similarity=0.473  Sum_probs=37.5

Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHH
Q psy14140         70 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF  149 (207)
Q Consensus        70 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~  149 (207)
                      -.|..++.+|..|+||||+|+.+|+..++..|++.|+...                      .-.++......|.|+-.+
T Consensus       629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~----------------------~~tdps~~~p~g~ta~~l  686 (975)
T KOG0520|consen  629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG----------------------AVTDPSPETPGGKTAADL  686 (975)
T ss_pred             ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccc----------------------cccCCCCCCCCCCchhhh
Confidence            4444455555555555555555555555555544443320                      111233344456677777


Q ss_pred             HHHCCCHHHHHHHHHh
Q psy14140        150 AASRGHADCVRWLLRY  165 (207)
Q Consensus       150 a~~~~~~~~~~~Ll~~  165 (207)
                      |...|+..+..+|-+.
T Consensus       687 a~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  687 ARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcccccchHHHHhhh
Confidence            7767766666666543

>smart00248 ANK ankyrin repeats

Probab=96.95  E-value=0.0022  Score=29.20  Aligned_cols=28  Identities=46%  Similarity=0.819  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        142 DGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       142 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      .|.|+++.++..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3678888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.94  E-value=0.00098  Score=52.35  Aligned_cols=45  Identities=33%  Similarity=0.530  Sum_probs=40.4

Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        139 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       139 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      .+..-.|+||+|+..|..+++.+||+.|+|+ .+|..|+||++++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3445679999999999999999999999999 79999999998766

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.0029  Score=28.75  Aligned_cols=27  Identities=48%  Similarity=0.815  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGK  107 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~  107 (207)
                      .|.||+++++..++.++++.|++.+..
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.68  E-value=0.0029  Score=49.80  Aligned_cols=56  Identities=29%  Similarity=0.491  Sum_probs=47.5

Q ss_pred             HHhcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHh
Q psy14140         68 VRDQGVDPNL------KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  123 (207)
Q Consensus        68 ll~~g~~~~~------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~  123 (207)
                      |.+.+++.|.      .+....|+||+|+..|..+++.+|++.|+++ .+|..|.||...+..
T Consensus       410 lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  410 LKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             HHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            6677776654      3456889999999999999999999999999 999999999888763

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.31  E-value=0.94  Score=31.49  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHh--------hcCCCCCCCCCC--CCcHHHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR--------DQGVDPNLKDGD--GATPLHFA  150 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~--------~~~~~~~~~~~~--g~t~l~~a  150 (207)
                      ..++.+-.||+..+.++++|+-+.-.    -.+-.+.+..|......++.        .....-...|..  -..-|..|
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~----i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a  150 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLH----IYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKA  150 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccC----CCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHH
Confidence            45677888999999999999944322    12223455666666655532        221111111110  11346788


Q ss_pred             HHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceee
Q psy14140        151 ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVST  192 (207)
Q Consensus       151 ~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~  192 (207)
                      +..|....+...+++|.++..     ++|..|++.++-.++.
T Consensus       151 ~~kgll~F~letlkygg~~~~-----~vls~Av~ynhRkIL~  187 (192)
T PF03158_consen  151 AAKGLLPFVLETLKYGGNVDI-----IVLSQAVKYNHRKILD  187 (192)
T ss_pred             HHCCCHHHHHHHHHcCCcccH-----HHHHHHHHhhHHHHHH
Confidence            999999999989998877632     7899999988766643

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.57  E-value=2.1  Score=30.91  Aligned_cols=46  Identities=13%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHhCC-Cc----cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhccc
Q psy14140        154 GHADCVRWLLRYGG-KL----VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQK  205 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~-~~----~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~  205 (207)
                      -...++++++++|. ++    .+-++|.|-|+-|.++++.|+      +..||+.|+
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~em------i~~Llk~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEM------IAFLLKYGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHH------HHHHHHcCc
Confidence            46788899999883 44    356789999999999999998      555666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-20
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-19
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-18
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-18
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-17
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-17
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-16
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-13
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-10
1uoh_A	226	Human Gankyrin Length = 226		2e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		8e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		8e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		9e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		9e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 59  TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFG 114
               G   +V+D    G DPN  D DG TPLH+AA  GH + V+ LL  G      D  G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 115 KSPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-L 169
           ++P++ AAEN   E+      +G DPN KD DG TPLH+AA  GH + V+ LL  G    
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
             D  G++P++ A E+   E+
Sbjct: 131 TSDSDGRTPLDLAREHGNEEI 151

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N KD DG TPLH AA  GH + V  LL+ G  +   DK G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N KD DG TPLH AA  GH + V  LL+ G  + 
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+P + A +N   +++ V
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEV 152

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 59  TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFG 114
               G   +V+D    G D N  D DG TPLH AA  GH + V+ LL  G      D  G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 115 KSPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-L 169
           K+P++ AAEN   EV      QG DPN KD DG TPLH AA  GH + V+ LL  G    
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
             D  G++P++ A E+   EV
Sbjct: 131 TSDSDGRTPLDLAREHGNEEV 151

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N KD DG TPLH AA  GH + V  LL+ G  +   DK G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N KD DG TPLH AA  GH + V  LL+ G  + 
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+P + A      +++ V
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEV 152

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N  D  G TPLH AA  GH + V  LL+YG  +   D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA+N  +E+ +     G D N KD +G TPLH AA  GH + V  LL+YG  + 
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N KD DG TPLH AA  GH + V  LL+ G  +   DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N KD DG TPLH AA  GH + V  LL+ G  + 
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
            R G+  +VR     G D N  D DG TPLH AAS GH + V  LL+ G  +   D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA    +E+ +     G D N  D DG TPLH AA  GH + V  LL++G  +  
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
            DKFGK+  + + +N   +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 59  TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
               G   +V+D    G D N  D DG TPLH AA  GH + V+ L+  G  +   D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 115 KSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
           ++P++ AAEN   EV      +G D N KD DG TPLH AA  GH + V+ L+  G  + 
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
             D  G++P++ A E+   EV
Sbjct: 131 TSDSDGRTPLDLAREHGNEEV 151

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N +D  G TPLH AA +GH + V  LL++G  +   DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N  D  G TPLH AA  GH + V  LL+YG  + 
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVD 135
           +G TPLH AA  GH + V+ LL  G  +   DK G++P++ AA N  +EV     + G D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            N KD +G TPLH AA  GH + V+ LL  G  +   DK G++P++ AA N  +EV
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 59  TCRKGESTKVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
               G   +V+D    G D N  D DG TPLH+AA  GH + V+ L+  G  +   D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 115 KSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
           ++P++ AA+    E+      +G D N KD DG TPLH+AA  GH + V+ L+  G  + 
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 170 VPDKFGKSPINDAAENQQMEV 190
             D  G++P++ A E+   E+
Sbjct: 131 TSDSDGRTPLDLAREHGNEEI 151

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G   +VR     G D N  D  G TPLH AA  GH + V  LL+ G  +   D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N KD +G TPLH AA+RGH + V  LL+YG  + 
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + +  N   +++ +
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEI 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
            R G+  +VR     G D N  D  G TPLH AA  GH + V  LL++G  +   D +G 
Sbjct: 22  ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA    +E+ +     G D N  D  G+TPLH AA  GH + V  LL+YG  +  
Sbjct: 82  TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 171 PDKFGKSPINDAAEN 185
            DKFGK+  + + +N
Sbjct: 142 QDKFGKTAFDISIDN 156

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N  D  G+TPLH AA  GH + V  LL++G  +   D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA+N  +E+ +     G D N +D  G TPLH AA RGH + V  LL++G  + 
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N  D  G TPLH AA  GH + V  LL++G  +   D FG
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N  D DG TPLH AA  G+ + V  LL++G  + 
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N +D  G TPLH AA  GH + V  LL+ G  +   D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N  D  G TPLH AA RGH + V  LL+ G  + 
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF-GK 115
            R G+  +VR     G D N +D  G TPLH AA  GH + V  LL+ G  +    F G 
Sbjct: 22  ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA+   +E+ +     G D N  D  G+TPLH AA  GH + V  LL+YG  +  
Sbjct: 82  TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
            DKFGK+  + + +N   +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
            R G+  +VR     G D N  D  G TPLH AA+ GH + V  LL++G  +   D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA    +E+ +     G D N  D  G TPLH AA  GH + V  LL++G  +  
Sbjct: 82  TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
            DKFGK+  + + +N   +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N  D  G TPLH   + GH + +  LL+Y   +   DK G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA    +E+ +     G D N  D  G TPLH AA  GH + V  LL+YG  + 
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G+  +VR     G D N  D  G TPLH AA  GH + V  LL+ G  +   D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA+   +EV +     G D N  D +G TPLH AA+ GH + V  LL++G  + 
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
            R G+  +VR     G D N  D  G TPLH AA+ GH + V  LL++G  +   D  G 
Sbjct: 22  ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA    +E+ +     G D N  D  G TPLH AA  GH + V  LL++G  +  
Sbjct: 82  TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 171 PDKFGKSPINDAAENQQMEVSTV 193
            DKFGK+  + + +N   +++ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK 115
            R G+  +VR     G D N  D  G TPLH AA+ GH + V  LLR G  +   D  G 
Sbjct: 10  ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 116 SPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
           +P++ AA    +E+ +     G D N KD  G TPL+ AA  GH + V  LL++G  +  
Sbjct: 70  TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 171 PDKFGKSPIN 180
            DKFGK+  +
Sbjct: 130 QDKFGKTAFD 139

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
             R G   +VR     G D N +D  G TPLH AA  GH + V  LL+ G  +   D  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P+  AA    +E+ +     G D N  D +G TPLH AA  GH + V  LL+ G  + 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 170 VPDKFGKSPINDAAENQQMEVSTV 193
             DKFGK+  + + +N   +++ +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVD 135
           +G TPLH AA  GH + V+ LL  G  +   DK G++P++ AA N  +EV     + G D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
            N KD +G TPLH AA  GH + V+ LL  G
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 32/139 (23%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
             R G+  +VR     G D N  D DG TPLH AA  GH + V  LL+YG          
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
                              D N +D  G TPLH AA RGH + V  LL++G  +   DKF
Sbjct: 72  -------------------DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
           GK+  + + +N   +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 58  CTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKLVPDKF 113
           C  R G +  V+   +   +PNL    G TPLH AA  GH + V  LL +   +    K 
Sbjct: 86  CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 114 GKSPINDAAENQQMEVRDQGVD----PNLKDGDGATPLHFAASRGHADCVRWLLRYGGK- 168
           G +P++ AA+  ++ V +  ++    PN    +G TPLH A    + D V+ LL  GG  
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 169 LVPDKFGKSPINDAAENQQMEVS 191
             P   G +P++ AA+  Q+EV+
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVA 228

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 32/138 (23%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
            R G+  +VR     G D N  D  G TPLH AA RGH + V  LL++G           
Sbjct: 22  TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---------- 71
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
                             D N  D  G TPLH AA+ GH + V  LL YG  +   DKFG
Sbjct: 72  ------------------DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
           K+  + + +N   +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
             R G+  +VR     G D N  D  G TPLH AA RGH + V  LL++G          
Sbjct: 21  ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
                              D N +D  G TPLH AA+ GH + V  LL YG  +   DKF
Sbjct: 72  -------------------DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
           GK+  + + +N   +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 32/138 (23%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
            R G+  +VR     G D N  D  G TPLH AA RGH + V  LL++G           
Sbjct: 22  TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---------- 71
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
                             D N  D  G TPLH AA+ GH + V  LL YG  +   DKFG
Sbjct: 72  ------------------DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
           K+  + + +N   +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 32/139 (23%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
             R G+  +VR     G D N  D  G TPLH AA   H + V  LL++G          
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA--------- 71
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
                              D N  D DG+TPLH AA  GH + V  LL++G  +   DKF
Sbjct: 72  -------------------DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
           GK+  + + +N   +++ +
Sbjct: 113 GKTAFDISIDNGNEDLAEI 131

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
               G+  +VR     G D N  D +G TPLH AA+ G  + V  LL+ G  +   D  G
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 115 KSPINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            +P++ AA +  +E+ +     G D N  D  G TPLH AA  G  + V  LL++G  + 
Sbjct: 73  ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 170 VPDKFGKSPINDAAENQQME 189
             D  G +   D + NQ  E
Sbjct: 133 AQDALGLTAF-DISINQGQE 151

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 89  AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD----QGVDPNLKDGDG 143
           AA  G  D VR L+  G  +   DK G +P++ AA N  +E+ +     G D N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 144 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV 193
            TPLH  A  GH + V  LL++G  +   DKFGK+  + + +N   +++ +
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
           GV  N KD  G +PLH AAS G  + V+ LL  G ++   ++ G +P++ AA   + E+ 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
               + G +P+ KD   AT +H AA++G+   +  LL Y     + D  G +P++ A + 
Sbjct: 123 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
           +++E
Sbjct: 183 ERVE 186

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
           GV  N KD  G +PLH AAS G  + V+ LL  G ++   ++ G +P++ AA   + E+ 
Sbjct: 64  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 123
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
               + G +P+ KD   AT +H AA++G+   +  LL Y     + D  G +P++ A + 
Sbjct: 124 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 183
Query: 186 QQME 189
           +++E
Sbjct: 184 ERVE 187

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 32/139 (23%)
Query: 59  TCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
             R G+  +VR     G D N KD  G TPL+ A + GH + V  LL+            
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------ 68
Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF 174
                            G D N  D  G TPLH AA  GH +    LL++G  +   DKF
Sbjct: 69  ----------------NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Query: 175 GKSPINDAAENQQMEVSTV 193
           GK+  + +  N   +++ +
Sbjct: 113 GKTAFDISIGNGNEDLAEI 131

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD----QGVD 135
           DG TPLH AA  GHA+ V+ LL  G  +    K G +P++ AA+N   E+      +G D
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 177
            N +  DG TP H A   GH + V+ L   G  +    +G S
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
           GV  N KD  G +PLH AAS G  + V+ LL  G  +   ++ G +P++ AA   + E+ 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
               + G +P+ KD   AT +H AA++G+   V  LL Y     + D  G +P++ A + 
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
           +++E
Sbjct: 183 ERVE 186

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
           GV  N KD  G +PLH AAS G  + V+ LL  G  +   ++ G +P++ AA   + E+ 
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
               + G +P+ KD   AT +H AA++G+   V  LL Y     + D  G +P++ A + 
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 186 QQME 189
           +++E
Sbjct: 183 ERVE 186

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 58  CTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS- 116
           C   +    KV   G+  N+   DG++PLH AA  G AD +  LL++G         ++ 
Sbjct: 62  CAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAV 121
Query: 117 PINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
           P++ A +    +V     D    PN KD  G TPL +A S GH + V  LL++G  +
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 48  EAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
           EA +HG  H  + R      +  QG   N+   D  +PLH A   GH  CV+ LL++G +
Sbjct: 9   EAAIHG--HQLSLRN-----LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 108 L--VPDKFGKSPINDAAENQQMEVRD------QGVDPNLKDGDGATPLHFAASRGHADCV 159
           +  V   +  +P+ +A  +   +  +        V P   + D A+P+H AA RGH +CV
Sbjct: 62  VNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECV 117
Query: 160 RWLLRYGGKLVPDKFGK--SPINDAAENQQ 187
             L+ YGG  +  K     +P+  A ENQQ
Sbjct: 118 NSLIAYGGN-IDHKISHLGTPLYLACENQQ 146

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 84  TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQ------GVDP 136
           +PLH AA  GH D    L++ G  +    +  ++P+ +AAEN  +E           VDP
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEV 190
             KD +G+T LH AA +GH + V++LL  G   V   D  G +P+  A E + +++
Sbjct: 73  --KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 1   MAHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYH----EEAKLHGKLH 56
           +++PL   AVS D     +A   G +L L N +S       +   H     EA L G L 
Sbjct: 48  LSNPLMGDAVS-DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL- 105
Query: 57  GCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
             +C K     +   G   N    D  TPL  A   G  DCV  LL++G  + P+    S
Sbjct: 106 --SCVK----ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS 159
Query: 117 PINDAAENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
           PI++AA    +E  +     G + + K     TPL+ A       CV+ LL  G  +   
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 173 KFGKSPINDAAENQQMEVSTV 193
           K   SP++        E++ +
Sbjct: 220 KGQDSPLHAVVRTASEELACL 240

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 60  CRKGESTKVRDQGVD--PNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKLVPDKFGKS 116
            R G+  +VR    +  P   D  G +PLH AA  GH      LLR G  +    K  ++
Sbjct: 10  ARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT 69
Query: 117 PINDAAENQQMEVRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP 171
           P++ AA      + +     G D N KD    T LH+A    H + V  L++YG  +   
Sbjct: 70  PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 172 DKFGKSPINDAAENQQMEVSTV 193
            KF K+  + + +N   +++ +
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEI 151

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS 116
            R G+  +VR     G D N  D  G TPLH AA  GH + V  LL+             
Sbjct: 22  ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------------- 68
Query: 117 PINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 175
                           G D N     G TPLH AA   H + V  LL++G  +   DKFG
Sbjct: 69  ---------------NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 176 KSPINDAAENQQMEVSTV 193
           K+  + + +N   +++ +
Sbjct: 114 KTAFDISIDNGNEDLAEI 131

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 51  LHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 109
           L   + G T    E  K   QG  PN++D  G +P+H AA  G  D ++ L+ +G  + V
Sbjct: 46  LQVMMFGSTAIALELLK---QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 102
Query: 110 PDKFGKSPINDAAENQQMEVRD---QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
           PD  G  PI+ A +     V        D + +D  G TPL  A  RG  D V  L
Sbjct: 103 PDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 89  AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
           AA+RG    VR LL    +LV PD   +FGK+ +      +    +E+  QG  PN++D 
Sbjct: 15  AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDT 72
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
            G +P+H AA  G  D ++ L+ +G  + VPD  G  PI+ A + 
Sbjct: 73  SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
            GK  +  A   Q  EVR     G D N KD DG TPLH AA  GH + V  LL+ G  +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
              DKFGK+  + + +N   +++ +
Sbjct: 62  NAQDKFGKTAFDISIDNGNEDLAEI 86

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           QG  PN++D  G +P+H AA  G  D ++ L+ +G  + VPD  G  PI+ A +     V
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116
Query: 130 RD---QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
                   D + +D  G TPL  A  RG  D V  L
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
           +T++  + V  N  D +G TPL +AA+ G    V +LL+ G    P   GK   S ++ A
Sbjct: 18  ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 74
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
                 ++     D GVD N  D +G TPL +A    H  CV+ LL  G 
Sbjct: 75  CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
           +T++  + V  N  D +G TPL +AA+ G    V +LL+ G    P   GK   S ++ A
Sbjct: 36  ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 92
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
                 ++     D GVD N  D +G TPL +A    H  CV+ LL  G 
Sbjct: 93  CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK---SPINDA 121
           +T++  + V  N  D +G TPL +AA+ G    V +LL+ G    P   GK   S ++ A
Sbjct: 20  ATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESALSLA 76
Query: 122 AENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
                 ++     D GVD N  D +G TPL +A    H  CV+ LL  G 
Sbjct: 77  CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 67  KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFG----KSPINDAA 122
           ++ + G D    D +  T LH+AA     D V++ +  G   + D+ G     +P++ A 
Sbjct: 27  ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA--IVDQLGGDLNSTPLHWAT 84
Query: 123 ENQQMEVRDQ----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKS 177
               + +  Q    G DP+L DG+G + +H AA  GH   V +L+  G  + + D+ G +
Sbjct: 85  RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 178 PINDAAENQQMEVSTVSPVVRRLLTI 203
           P+  AA        +V P  R LLT 
Sbjct: 145 PLMWAA----YRTHSVDP-TRLLLTF 165

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           Q V+    +G  +TPLHFAA       V +LL++G  +   DK G  P+++A      EV
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPIN 180
            +     G   N+ D    TPLH AA++G  +  + LL++G      ++ G +P++
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           Q V+    +G  +TPLHFAA       V +LL++G  +   DK G  P+++A      EV
Sbjct: 33  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 92
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPIN 180
            +     G   N+ D    TPLH AA++G  +  + LL++G      ++ G +P++
Sbjct: 93  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           Q V+    +G  +TPLHFAA       V +LL++G  +   DK G  P+++A      EV
Sbjct: 35  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 94
Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
            +     G   N+ D    TPLH AA++G  +  + LL++G 
Sbjct: 95  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 74/199 (37%), Gaps = 46/199 (23%)
Query: 19  QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEA------KLHGKLHGCTCRKGESTKVRDQG 72
           QA    D   +   L+L + +   P  HE A       LH K      RK  +  +  +G
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK------RKQVAELLLRKG 237
Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
            + N K+ D  TPLH AA R H D +  L ++G K+                        
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM------------------------ 273
Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK---LVPDKFGKSPINDAAENQQME 189
               N  D  G T LH AA  GH    R LL YG     +    F  + + + A  Q + 
Sbjct: 274 ----NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILS 329
Query: 190 VST---VSPVVRRLLTIQK 205
            ST    S V  RLL   K
Sbjct: 330 ESTPMRTSDVDYRLLEASK 348

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
            G DPN+KD  G TPLH A + GH   V  LL++          K+ +N           
Sbjct: 32  NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH----------KALVNTTGYQND---- 77
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQME 189
                         +PLH AA  GH D V+ LL YG  +   + FG  P+ D  +++ M+
Sbjct: 78  --------------SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMK 122
Query: 190 VSTVSP 195
              + P
Sbjct: 123 SLLLLP 128

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
            GK  +  A   Q  EVR     G D   KD +G+TPLH AA  GH + V+ LL  G  +
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
              DKFGK+  + + +N   +++ +
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAEI 108

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 113 FGKSPINDAAENQQMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
            GK  +  A   Q  EVR     G D   KD +G+TPLH AA  GH + V+ LL  G  +
Sbjct: 6   LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 170 -VPDKFGKSPINDAAENQQMEVSTV 193
              DKFGK+  + + +N   +++ +
Sbjct: 66  NAQDKFGKTAFDISIDNGNEDLAEI 90

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 29  LSNCLSLLVQHGTLP---DYHEE--AKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGA 83
           L + + LLV  G  P   D H +  A L  +    TC +          +D   ++ DG 
Sbjct: 58  LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117
Query: 84  TPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQME----VRDQGVDPN 137
           T LH A +    + V+ LL  G  +  V  K G+SP+  A EN  +     +   G + N
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 138 LKDGDGATPLHFAASRGHADCVRWLLRYGG 167
            +   G++ LH A+ RG    VR L+R G 
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGA 207

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 89  AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
           AA+RG    VR LL    +LV PD   +FGK+ +      +    +E+  QG  PN++D 
Sbjct: 15  AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDA 72
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQMEVSTVSP 195
            G +P+H AA  G  D ++ L+ +G  +   D  G  PI+ A  E     VS ++P
Sbjct: 73  SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV----R 130
           N  D  G TPL +A++ G  + VR+LL +G    +  K  +S ++ A+     ++     
Sbjct: 30  NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 183
           ++ VD N+ D +G TPL +A    H  CV  LL  G  L  +   G +P++ A 
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 89  AASRGHADCVRWLLRYGGKLV-PD---KFGKSPIND---AAENQQMEVRDQGVDPNLKDG 141
           AA+RG    VR LL    +LV PD   +FGK+ +      +    +E+  QG  PN++D 
Sbjct: 17  AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDA 74
Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA-ENQQMEVSTVSP 195
            G +P+H AA  G  D ++ L+ +G  +   D  G  PI+ A  E     VS ++P
Sbjct: 75  SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV----R 130
           N  D  G TPL +A++ G  + VR+LL +G    +  K  +S ++ A+     ++     
Sbjct: 30  NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDK-FGKSPINDAA 183
           ++ VD N+ D +G TPL +A    H  CV  LL  G  L  +   G +P++ A 
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 57  GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
            C+    E  K + D+ + P+L      G T LH A  +   +  ++L+  G  + + DK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
           F + P++ AA    +++ +          N +D  G TPL  A + GH D    L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQMEVSTVSPVVRRL 200
            +  LV +K  K+   D A N+Q++   ++ VV +L
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVKKFFLNNVVDKL 232

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 57  GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
            C+    E  K + D+ + P+L      G T LH A  +   +  ++L+  G  + + DK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
           F + P++ AA    +++ +          N +D  G TPL  A + GH D    L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQMEVSTVSPVV 197
            +  LV +K  K+   D A N+Q++   ++ VV
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVKKFFLNNVV 229

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 57  GCTCRKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK 112
            C+    E  K + D+ + P+L      G T LH A  +   +  ++L+  G  + + DK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 113 FGKSPINDAAENQQMEVRDQ-----GVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYG 166
           F + P++ AA    +++ +          N +D  G TPL  A + GH D    L+ +YG
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 167 GK--LVPDKFGKSPINDAAENQQME 189
            +  LV +K  K+   D A N+Q++
Sbjct: 199 AEYDLVDNKGAKA--EDVALNEQVK 221

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 28/96 (29%)
Query: 74  DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
           DP+L + +G T LH A   GH + V++L+++                            G
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------------------------G 93
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
           V+ N  D DG TPLH AAS  +    ++L+  G  +
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 28/96 (29%)
Query: 74  DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
           DP+L + +G T LH A   GH + V++L+++                            G
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQF----------------------------G 93
Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
           V+ N  D DG TPLH AAS  +    ++L+  G  +
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +G +P+LKD  G   +H AA  G  D ++ LL                    ENQ     
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLL--------------------ENQ----- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
               D N++D +G  PLH AA  GH   V +L+++
Sbjct: 94  ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 99  RWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG 154
           R LLR     + D+ G + I+DAA   Q++    + +   D N++D +G  PLH AA  G
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 155 HADCVRWLLRY 165
           H   V +L+++
Sbjct: 115 HLRVVEFLVKH 125

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 20/202 (9%)
Query: 4   PLFIRAVSG-------DVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLH 56
           PL I AV G       D++ +  + +     ++S+ L+   +     D   E  LH  L 
Sbjct: 5   PLMIAAVRGGGLDTGEDIENNEDSTAQ----VISDLLAQGAELNATMDKTGETSLH--LA 58
Query: 57  GCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKF--G 114
               R   + ++ D G D N +D  G TPLH A +       + LLR     +  +   G
Sbjct: 59  ARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDG 118
Query: 115 KSPINDAA----ENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKL 169
            +P+  AA    E    ++     D N  D  G T LH+AA+  + + V  LL  +  + 
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 170 VPDKFGKSPINDAAENQQMEVS 191
             D   ++P+  AA     E S
Sbjct: 179 AQDDKDETPLFLAAREGSYEAS 200

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 41/168 (24%)
Query: 19  QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRD---QGVDP 75
           +  ++  RL L N  + L Q     D H  + LH       CR+G S  V     +G   
Sbjct: 15  EGNAVAVRLWLDNTENDLNQ----GDDHGFSPLH-----WACREGRSAVVEMLIMRGARI 65
Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
           N+ +    TPLH AAS GH D V+ LL+Y          K+ IN   E+           
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQY----------KADINAVNEH----------- 104
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
                  G  PLH+A   G       L+  G  + + +K+G+ P++ A
Sbjct: 105 -------GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 41/168 (24%)
Query: 19  QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRD---QGVDP 75
           +  ++  RL L N  + L Q     D H  + LH       CR+G S  V     +G   
Sbjct: 10  EGNAVAVRLWLDNTENDLNQ----GDDHGFSPLH-----WACREGRSAVVEMLIMRGARI 60
Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
           N+ +    TPLH AAS GH D V+ LL+Y          K+ IN   E+           
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQY----------KADINAVNEH----------- 99
Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
                  G  PLH+A   G       L+  G  + + +K+G+ P++ A
Sbjct: 100 -------GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA--AENQ---QMEV 129
           N  D  GAT LH AA+   +D  + LL       + D  G++P++ A  A+ Q   Q+ +
Sbjct: 51  NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 130 RDQGVDPNLKDGDGATPLHFAA 151
           R++  D + +  DG TPL  AA
Sbjct: 111 RNRATDLDARMHDGTTPLILAA 132

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +G +P+LKD  G   +H AA  G  D ++ LL +                          
Sbjct: 59  RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQ------------------------- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
               D N++D +G  PLH AA  GH   V +L+++
Sbjct: 94  ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 35/148 (23%)
Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN-----DAAE 123
           + G + N  D +G  PLH AAS G+ D   +L+  G  +   +  G +P++        E
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153
Query: 124 NQQMEVRDQGVDPN----------LKDG----------------DGATPLHFAASRGHAD 157
             Q EV  QGVD            L+D                  G T LH AA++G+ +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 158 CVRWLL--RYGGKLVPDKFGKSPINDAA 183
            ++ L+  RY    + D  G +P++ AA
Sbjct: 214 VLKLLIQARYDVN-IKDYDGWTPLHAAA 240

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +G +P+LKD  G   +H AA  G  D ++ LL +                          
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ------------------------- 93
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
               D N++D +G  PLH AA  GH   V +L+++
Sbjct: 94  ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +G +P+LKD  G   +H AA  G  D ++ LL +                          
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA------------------------ 94
Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
               D N++D +G  PLH AA  GH   V +L+++
Sbjct: 95  ----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-22
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	5e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-22
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	6e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-12
2pnn_A	273	Transient receptor potential cation channel subfa	7e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-08

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (292), Expect = 6e-32
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G   N    D  TPL  A   G  DCV  LL++G  + P+    SPI++AA    +E 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVEC 172

Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
                  G + + K     TPL+ A       CV+ LL  G  +   K   SP++     
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRT 232

Query: 186 QQMEV 190
              E+
Sbjct: 233 ASEEL 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 98.7 bits (247), Expect = 2e-25
 Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 28/121 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            QG   N+   D  +PLH A   GH  CV+ LL                           
Sbjct: 80  SQGWAVNIITADHVSPLHEACLGGHLSCVKILL--------------------------- 112

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
              G   N    D  TPL  A   G  DCV  LL++G  + P+    SPI++AA    +E
Sbjct: 113 -KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE 171

Query: 190 V 190
            
Sbjct: 172 C 172

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.4 bits (241), Expect = 2e-24
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 21/144 (14%)

Query: 35  LLVQHGTLPDYHEEAKLHGKLHGCT-----CRKGESTKVR---DQGVDPNLKDGDGATPL 86
           LL+QHG        A +  +    +      R+G    V      G + + K     TPL
Sbjct: 143 LLLQHG--------ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194

Query: 87  HFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGD 142
           + A       CV+ LL  G  +   K   SP++        E+     D G D   K+ +
Sbjct: 195 YLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254

Query: 143 GATPLHFAASRGHADCVRWLLRYG 166
           G  P+           + +L R G
Sbjct: 255 GKRPVELVPPESPLAQL-FLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.5 bits (218), Expect = 3e-21
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 32/162 (19%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCT-CRKGESTKVRDQGVDPNLKDGDGATPLHFA 89
           +  S LV  G            G + G       +   +R              +P+H A
Sbjct: 9   HHSSGLVPRG--SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA 66

Query: 90  ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
           A  GH   +R L+                             QG   N+   D  +PLH 
Sbjct: 67  AIHGHQLSLRNLI----------------------------SQGWAVNIITADHVSPLHE 98

Query: 150 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           A   GH  CV+ LL++G ++        +P+ +A  +   + 
Sbjct: 99  ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 5e-13
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 89  AASRGHADCVRWLLRYG------GKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
            +S  H      L+  G              G  P           + +           
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN---PLMGDAVS 58

Query: 143 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
             +P+H AA  GH   +R L+  G  + +      SP+++A     +  
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC 107

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  111 bits (280), Expect = 9e-31
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)

Query: 55  LHGCTCRKGESTKVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG----G 106
           LH   C + E  KV+     +      KD DG  PLH++ S    +   +LL        
Sbjct: 6   LH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 107 KLVPDKFGKSPINDAAENQQMEV------RDQGVDPNLKDGDGATPLHFAASRGHADCVR 160
              PD  G +P + A     +EV      R    D N     G T LH A  +   +  +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 161 WLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           +L+  G  + + DKF + P++ AA    +++
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKL 155

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 32/141 (22%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
            L      PD ++     G   LH     K      +   + G    +KD     PLH A
Sbjct: 90  SLYDRPLKPDLNKITN-QGVTCLH-LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147

Query: 90  ASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEV-----RDQGVDPNLKDGD 142
           AS G    +  L   G   V   DK G +P+  A      +         G + +L D  
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 143 GATPLHFAASRGHADCVRWLL 163
           GA     A    +    ++ L
Sbjct: 208 GAKAEDVAL---NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.3 bits (181), Expect = 3e-16
 Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 31/113 (27%)

Query: 82  GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDG 141
              PLH A        V+ LL                             +      KD 
Sbjct: 2   SNYPLHQACMENEFFKVQELL---------------------------HSKPSLLLQKDQ 34

Query: 142 DGATPLHFAASRGHADCVRWLLRYG----GKLVPDKFGKSPINDAAENQQMEV 190
           DG  PLH++ S    +   +LL           PD  G +P + A     +EV
Sbjct: 35  DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  103 bits (259), Expect = 4e-28
 Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             G D N +D  G TPLH AA  GH + V  LL+ G  +   D  G +P+  AA    +E
Sbjct: 35  ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94

Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
           +       G D N  D +G TPLH AA  GH + V  LL+ G  +   DKFGK+  + + 
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154

Query: 184 ENQQMEV 190
           +N   ++
Sbjct: 155 DNGNEDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.6 bits (195), Expect = 9e-19
 Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 30/122 (24%)

Query: 71  QGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           +G   +   G D    L  AA  G  D VR L+                           
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILM--------------------------- 34

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
              G D N +D  G TPLH AA  GH + V  LL+ G  +   D  G +P+  AA    +
Sbjct: 35  -ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL 93

Query: 189 EV 190
           E+
Sbjct: 94  EI 95

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 75.5 bits (187), Expect = 1e-17
 Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 28/96 (29%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G D N  D +G TPLH AA  GH + V  LL                           
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL--------------------------- 133

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
              G D N +D  G T    +   G+ D    L + 
Sbjct: 134 -KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  103 bits (260), Expect = 1e-27
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQM 127
              +D   ++ DG T LH A +    + V+ LL  G  +  V  K G+SP+  A EN  +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163

Query: 128 EVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA 182
            +       G + N +   G++ LH A+ RG    VR L+R G    + +    +P+  A
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

Query: 183 AENQQMEV 190
              + +++
Sbjct: 224 RSRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 6e-22
 Identities = 23/126 (18%), Positives = 34/126 (26%), Gaps = 33/126 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + ++ +    TPLH A        VR L+                           
Sbjct: 34  QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV--------------------------- 66

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP-----DKFGKSPINDAAE 184
              G  P   D  G T  H A       C+R LL             +  G + ++ A  
Sbjct: 67  -TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125

Query: 185 NQQMEV 190
            +  E 
Sbjct: 126 TECQET 131

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.6 bits (213), Expect = 1e-20
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 25/116 (21%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
              D DG TPLH A  +G+   V  L+                           +  G +
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNL------------------------FQQGGRE 38

Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            ++ +    TPLH A        VR L+  G      D+ G++  + A E++    
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.7 bits (203), Expect = 3e-19
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 28/97 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + N +   G++ LH A+ RG    VR L+                           
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLV--------------------------- 203

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
              G D +LK+    TPL  A SR   D +R      
Sbjct: 204 -RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  100 bits (253), Expect = 3e-27
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           Q V+    +G  +TPLHFAA       V +LL++G  +   DK G  P+++A      EV
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90

Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE 184
                  G   N+ D    TPLH AA++G  +  + LL++G      ++ G +P++   +
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150

Query: 185 N 185
            
Sbjct: 151 G 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.5 bits (174), Expect = 8e-16
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 29/97 (29%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G   N+ D    TPLH AA++G  +  + LL                           
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL--------------------------- 128

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
              G DP  K+ DG TPL      G  D    L    
Sbjct: 129 -QHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  100 bits (252), Expect = 3e-27
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             G      D  G +PLH AA  GH      LLR G       K  ++P++ AA      
Sbjct: 23  ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81

Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
           +       G D N KD    T LH+A    H + V  L++YG  +    KF K+  + + 
Sbjct: 82  IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141

Query: 184 ENQQMEV 190
           +N   ++
Sbjct: 142 DNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.4 bits (236), Expect = 6e-25
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----DQGVDP 136
           D    L  AA  G  D VR L+  G     D  G SP++ AA+             GV  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           + +     TPLH AAS GHA+ V  LL++G  +   D    + ++ A E+   EV
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.8 bits (224), Expect = 3e-23
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             GV  + +     TPLH AAS GHA+ V  LL++G  +   D    + ++ A E+   E
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
           V       G D + +     T    +   G+ D    L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 99.8 bits (250), Expect = 1e-26
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 79  DGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVR----DQ 132
             +    +      G+A  VR  L      +   D  G SP++ A    +  V      +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           G   N+ +    TPLH AAS GH D V+ LL+Y   +   ++ G  P++ A    Q +V
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.3 bits (202), Expect = 9e-20
 Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 33/116 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
               D N  +  G  PLH+A   G       L+                           
Sbjct: 93  QYKADINAVNEHGNVPLHYACFWGQDQVAEDLV--------------------------- 125

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
              G   ++ +  G  P+  A +           + G  L      + P  D    
Sbjct: 126 -ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-----NRIPYKDTFWK 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 43/126 (34%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
            L+Q+    +       HG   LH   C  G+          G   ++ +  G  P+  A
Sbjct: 90  KLLQYKADIN---AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

Query: 90  ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
            +                                         G + N        P   
Sbjct: 146 KAPLRELLRERAE----------------------------KMGQNLN------RIPYKD 171

Query: 150 AASRGH 155
              +G 
Sbjct: 172 TFWKGT 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 99.5 bits (249), Expect = 4e-26
 Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 24/176 (13%)

Query: 35  LLVQHG---TLPDYHEEAKLHGKLHGCTCRKG--ESTKV-------RDQGVDPNLKDGDG 82
            L+  G    L D+     LH       C +G   S  V                 + +G
Sbjct: 63  ALLGAGCDPELRDFRGNTPLH-----LACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 83  ATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEVR----DQGVDP 136
            T LH A+  G+   V  L+  G  +   +   G++ ++ A + Q  ++       G D 
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEVS 191
           N     G +P      R      + L +   + L      +   +   E++  E +
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 78  KDGDGATPLHFAASRGH----ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV--- 129
              DG + LH A          + +R +      L   +   ++P++ A    Q E+   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 130 -RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-------VPDKFGKSPIND 181
               G DP L+D  G TPLH A  +G    V  L +              +  G + ++ 
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 182 AAENQQMEV 190
           A+ +  + +
Sbjct: 124 ASIHGYLGI 132

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 32  CLSLLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPL 86
            + LLV  G   D + +   +G+  LH           V      G D N     G +P 
Sbjct: 132 IVELLVSLGA--DVNAQEPCNGRTALH-LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 188

Query: 87  HFAASRGHADCVRWLLRYGGK-LVPDKFGKSPINDAAENQQMEV 129
                R      + L +   + L      +   +   E++  E 
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (252), Expect = 4e-26
 Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 27/182 (14%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
            L+      +Y +     G+  LH      GE++ V      G    + +  G T LH A
Sbjct: 27  FLLGFSAGHEYLDLQNDLGQTALH-LAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85

Query: 90  ASRGHADCVRWLLRYG---GKLVPDKFGKSPIND------------AAENQQMEVR---- 130
                  C   LL+      +   D +     +             +  N + E      
Sbjct: 86  CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK-FGKSPINDAAENQQM 188
           D  +    ++ DG TPLH A     A+ VR L   G  L  P+   G++P++ A E Q  
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 189 EV 190
            V
Sbjct: 206 SV 207

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 94.9 bits (237), Expect = 6e-24
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQMEVR- 130
                DG T LH A    H   + +LL +          +  G++ ++ AA   +     
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 131 ---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
                G    + +  G T LH A       C   LL+  
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.5 bits (223), Expect = 5e-22
 Identities = 27/123 (21%), Positives = 36/123 (29%), Gaps = 30/123 (24%)

Query: 70  DQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
           D G D N  +   G TPLH A     A  +  LL                          
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-------------------------- 212

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
               G DP  +   G TPL  A  R +    R L  +G           SP + +  +  
Sbjct: 213 --KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

Query: 188 MEV 190
            + 
Sbjct: 271 SDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 36/137 (26%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
           LL   G   D ++     G+  LH        ++ +      G DP  +   G TPL  A
Sbjct: 176 LLRDAGA--DLNKPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 90  ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
             R +    R L                               G       GD  +P   
Sbjct: 233 LLRPNPILARLLR----------------------------AHGAPEPEDGGDKLSPCSS 264

Query: 150 AASRGHADCVRWLLRYG 166
           + S   +D       Y 
Sbjct: 265 SGSDSDSDNRDEGDEYD 281

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  102 bits (256), Expect = 4e-26
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV- 129
               P   + +    LH  A+ G       + R    ++  +  ++ ++  A N   E  
Sbjct: 83  NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKS 141

Query: 130 -----------RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKS 177
                         G D N  D D  TPL  A        V +L++ G    + +K  +S
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201

Query: 178 PINDAAENQQMEV 190
            ++ AA N+   +
Sbjct: 202 ALHQAAANRDFGM 214

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             G D N  D D  TPL  A        V +L++ G    + +K  +S ++ AA N+   
Sbjct: 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 213

Query: 129 V-------RDQGVDPNLKDGDGATPLHFAASRGHADCV---RWLLRYG---------GKL 169
           +            D    D +G T L   A     D V   + L+  G          K 
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 273

Query: 170 VPDKFGKSPINDAAENQQMEV 190
                G++ ++ AA+   M +
Sbjct: 274 SEKYKGRTALHYAAQVSNMPI 294

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 69  RDQGVDPNLKDGDGATPLHFAASRGHADCV---RWLLRYG---------GKLVPDKFGKS 116
                D    D +G T L   A     D V   + L+  G          K      G++
Sbjct: 222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281

Query: 117 PINDAAENQQMEV-----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
            ++ AA+   M +      ++G + + +D DG TP+  AA  G  + V +L++ G  +  
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341

Query: 171 PDKFGKSPINDAAENQQMEV 190
            D    +    A  N    +
Sbjct: 342 VDATDHTARQLAQANNHHNI 361

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 13/125 (10%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           ++    +         L  A+  G+            +     +   P      N    +
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQ--------RNELQHYSLYPNPQGYGNGNDFL 76

Query: 130 RD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
            D        P   + +    LH  A+ G       + R    ++  +  ++ ++  A N
Sbjct: 77  GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASN 135

Query: 186 QQMEV 190
              E 
Sbjct: 136 SSAEK 140

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 14/128 (10%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---D 131
           N        P       G+     +          P+      ++  A            
Sbjct: 55  NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR 114

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP---------DKFGKSPINDA 182
           + V+         T LH+ AS   A+    L+ +  K            D    +P+  A
Sbjct: 115 ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 183 AENQQMEV 190
              ++  +
Sbjct: 174 VLARRRRL 181

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 40/143 (27%)

Query: 35  LLVQHG-----TLPDYHEEAKLHGK--LHGCTCRKG--ESTK--VRDQGVDPNLKDGDGA 83
           LLV+ G           +  K  G+  LH    +       K  V ++G + + +D DG 
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 84  TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
           TP+  AA  G  + V +L+                             QG      D   
Sbjct: 315 TPIMLAAQEGRIEVVMYLI----------------------------QQGASVEAVDATD 346

Query: 144 ATPLHFAASRGHADCVRWLLRYG 166
            T    A +  H + V    R  
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCR 369

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.1 bits (248), Expect = 8e-26
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
             D + +  DG TPL  AA       +  L+     +   D  GKS ++ AA    ++  
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
                 G + ++++    TPL  AA  G  +  + LL +     + D   + P + A E 
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233

Query: 186 QQMEV 190
              ++
Sbjct: 234 MHHDI 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 85.6 bits (213), Expect = 1e-20
 Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 31/124 (25%)

Query: 70  DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
            QG    N  D  G T LH AA    +D  + LL                          
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-------------------------- 77

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQ 186
             +   D N++D  G TPLH A S       + L+R     +      G +P+  AA   
Sbjct: 78  --EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135

Query: 187 QMEV 190
              +
Sbjct: 136 VEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 9e-19
 Identities = 31/124 (25%), Positives = 42/124 (33%), Gaps = 25/124 (20%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR-- 130
           +D N++  DG TPL  A+  G                    G    N   E     V   
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGG-------------------GLETGNSEEEEDAPAVISD 41

Query: 131 --DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 186
              QG    N  D  G T LH AA    +D  + LL       + D  G++P++ A    
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 187 QMEV 190
              V
Sbjct: 102 AQGV 105

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 78.7 bits (195), Expect = 4e-18
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 28/98 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + ++++    TPL  AA  G  +  + LL                           
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLL--------------------------- 210

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG 167
            D   + ++ D     P   A  R H D VR L     
Sbjct: 211 -DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 97.9 bits (245), Expect = 1e-25
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR 130
             D + +  DG TPL  AA       +  L+     +   D  GKS ++ AA    ++  
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141

Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
                 G + ++++    TPL  AA  G  +  + LL +     + D   + P + A E 
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201

Query: 186 QQMEV 190
              ++
Sbjct: 202 MHHDI 206

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 2e-20
 Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 31/124 (25%)

Query: 70  DQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
            QG    N  D  G T LH AA    +D  + LL                          
Sbjct: 12  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-------------------------- 45

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQ 186
             +   D N++D  G TPLH A S       + L+R     +      G +P+  AA   
Sbjct: 46  --EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103

Query: 187 QMEV 190
              +
Sbjct: 104 VEGM 107

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 28/97 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + ++++    TPL  AA  G  +  + LL                           
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLL--------------------------- 178

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
            D   + ++ D     P   A  R H D VR L  Y 
Sbjct: 179 -DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 94.8 bits (237), Expect = 2e-25
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             G DPN+KD  G TPLH A + GH   V  LL++   +        SP++DAA+N  ++
Sbjct: 31  QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
           +       G   N  +  G  P+ +         +    +  
Sbjct: 91  IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.0 bits (222), Expect = 4e-23
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 30/120 (25%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
           G+DP   +  G T LH A+ +G    V +LL                             
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLL----------------------------Q 31

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            G DPN+KD  G TPLH A + GH   V  LL++   +        SP++DAA+N  +++
Sbjct: 32  NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.6 bits (241), Expect = 6e-25
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
            +  DP+  + +G T LH A    +   V +L+  G  +  PD  G +P++ AA      
Sbjct: 42  KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV 101

Query: 129 V----RDQGVDPNLKDG-DGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPIN 180
           +       G         DGAT          G+ADC  +L      + + +      + 
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161

Query: 181 DAAENQQMEV 190
           D +     E+
Sbjct: 162 DYSAEFGDEL 171

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 32/124 (25%)

Query: 71  QGVDPNLKD---GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
           +   P        +    L  AA  G  + V+  +                         
Sbjct: 7   KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV------------------------- 41

Query: 128 EVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 186
               +  DP+  + +G T LH A    +   V +L+  G  +  PD  G +P++ AA   
Sbjct: 42  ---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98

Query: 187 QMEV 190
              +
Sbjct: 99  DTVI 102

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 70  DQGVDPNLKDG-DGATPLHFAAS--RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ 125
             G         DGAT          G+ADC  +L      + + +      + D +   
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167

Query: 126 QMEVR---DQGVDPNLKDGDGATPLHFAASRGHADCV 159
             E+     + V    +DG   T   +AA  G    V
Sbjct: 168 GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 95.1 bits (237), Expect = 6e-25
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHAD------CVRWLLRYGGKL-VPDKFGKSPINDAA 122
           ++G D   +  +G T        G  D        +  L  G  +    K  K  +    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 123 ENQQMEVRD-----------QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
            N  ++  +            G+   +KD  G T L F         ++ +  Y 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 15/136 (11%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR--------DQ 132
                +  AA  G  +    L   G +        + + D   N   E R        ++
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 133 GVDPNLKDGDGATPLHFAASRGHAD------CVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
           G D   +  +G T        G  D        +  L  G  +    K  K  +     N
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 186 QQMEVSTVSPVVRRLL 201
             ++ + + P+ + + 
Sbjct: 125 YFVDENEMIPLYKLIF 140

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.5 bits (241), Expect = 7e-25
 Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 79  DGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV----RDQGV 134
           +  G   L               + +G ++  +    + + D++   + ++      +  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           DP+L + +G T LH A   GH + V++L+++G  +   D  G +P++ AA    ++V
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.4 bits (212), Expect = 1e-20
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 32/125 (25%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +  DP+L + +G T LH A   GH + V++L+                           
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--------------------------- 90

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG----GKLVPDKFGKSPINDAAEN 185
              GV+ N  D DG TPLH AAS  +    ++L+  G         D    +   +  E 
Sbjct: 91  -QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 186 QQMEV 190
              + 
Sbjct: 150 GYTQC 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.2 bits (152), Expect = 4e-12
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 110 PDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
           P+  G+  +         +        G+            L  ++  G  D V+ ++  
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYE 59

Query: 166 GGKL-VPDKFGKSPINDAAENQQMEV 190
                +P+  G + +++A      E+
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEI 85

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 95.7 bits (239), Expect = 1e-24
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP------DKFGKSPINDAAE 123
            +G + + +   G T LH AA   + +    L+    +LV          G++ ++ A  
Sbjct: 25  FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI 84

Query: 124 NQQME-VR---DQGVDPNLKDGD-------------GATPLHFAASRGHADCVRWLLRYG 166
           NQ +  VR    +G   + +                G  PL FAA  G  + VR L+ +G
Sbjct: 85  NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144

Query: 167 GKL-VPDKFGKSPINDAAENQQMEV 190
             +   D  G + ++          
Sbjct: 145 ADIRAQDSLGNTVLHILILQPNKTF 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 29/146 (19%)

Query: 74  DPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------GKLVPDKFGKSPIN 119
               +  +G T LH A    + + VR LL  G                     +G+ P++
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 120 DAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRW----LLRYG----- 166
            AA     E+     + G D   +D  G T LH    + +          LL Y      
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186

Query: 167 --GKLVPDKFGKSPINDAAENQQMEV 190
              +LVP+  G +P   A     + +
Sbjct: 187 KSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 143 GATPLHFAASRGHADCVRWLLRYGG-----KLVPDKFGKSPINDAAENQQMEV 190
             +PL  AA       +  LL++ G     +      G++ ++ AA    +E 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGETALHIAALYDNLEA 52

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.7 bits (238), Expect = 1e-24
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
                    D D  T LH+A S GH + V +LL+ G  +   D  G SP++ AA     E
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87

Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
           +      +G   N  + +G TPLH+AAS+   +    LL  G      D +  + ++ AA
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147

Query: 184 ENQQMEVSTV 193
               +++  +
Sbjct: 148 AKGNLKMVHI 157

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 2e-21
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
            L+Q G   +   +    G   LH      G    V+    +G   N  + +G TPLH+A
Sbjct: 58  FLLQLGVPVN---DKDDAGWSPLH-IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113

Query: 90  ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR----DQGVDPNLKDGDGA 144
           AS+   +    LL  G      D +  + ++ AA    +++           N++D +G 
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173

Query: 145 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
           TPLH A      +  ++L+  G  + + +K  K+P+  A     +
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 29/114 (25%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
                 + A S    +    +L                                     D
Sbjct: 6   SNIMICNLAYSGKLDELKERIL----------------------------ADKSLATRTD 37

Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV 193
            D  T LH+A S GH + V +LL+ G  +   D  G SP++ AA     E+   
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR-DQGVDPNLKDGDGATPLHFA 89
               +L++ G  PD  +                +   +        N++D +G TPLH A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

Query: 90  ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---DQGVDPNL 138
                 +  ++L+  G  + + +K  K+P+  A     + +     +G + ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL-ILKRLAEGEEASM 231

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.8 bits (232), Expect = 1e-24
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 71  QGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           +G   +   G D    L  AA  G  D VR L+  G  +   D++G +P+  A  +  +E
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
           +       G D N  D  G TPLH AA  GH +    LL++G  +   DKFGK+  + + 
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

Query: 184 ENQQMEV 190
            N   ++
Sbjct: 122 GNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.2 bits (220), Expect = 1e-22
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
            G D N KD  G TPL+ A + GH + V  LL+ G  +   D  G +P++ AA    +E+
Sbjct: 36  NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95

Query: 130 R----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
                  G D N +D  G T    +   G+ D    L + 
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
             G D N +D  G T    +   G+ D    L + 
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 93.6 bits (234), Expect = 1e-24
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G DP++   +  + L  A++ G+ D V  LL                           
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLL--------------------------- 89

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
            ++ VD N+ D +G TPL +A    H  CV  LL  G  L      G +P++ A      
Sbjct: 90  -ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

Query: 189 EV 190
           +V
Sbjct: 149 KV 150

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.7 bits (229), Expect = 9e-24
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 29/110 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           ++ VD N+ D +G TPL +A    H  CV  LL                           
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL--------------------------- 122

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP 178
             +G D   +   G TP+  A + G+    + +  +  KL   +     P
Sbjct: 123 -ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             GV  +     G TPLH A+  G+   V++LL                           
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL--------------------------- 331

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
                D N K   G +PLH AA +GH D V  LL+ G         G +P+  A     +
Sbjct: 332 -QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390

Query: 189 EV 190
            V
Sbjct: 391 SV 392

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.6 bits (239), Expect = 2e-23
 Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           +   +PNL    G TPLH AA  GH + V  LL                           
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALL--------------------------- 133

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
            ++          G TPLH AA  G       LL          K G +P++ A  +  +
Sbjct: 134 -EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192

Query: 189 EV 190
           ++
Sbjct: 193 DI 194

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 3e-23
 Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G  P+    +G TPLH AA +   +  R LL                           
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL--------------------------- 232

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
              G   N +   G TPLH AA  GHA+ V  LL       + +K G +P++  A+   +
Sbjct: 233 -QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291

Query: 189 EV 190
            V
Sbjct: 292 PV 293

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-23
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 29/121 (23%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
            G+        G TPLH A+  GH   V+ LL                            
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLL---------------------------- 34

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
            +G  PN+ +    TPLH AA  GH +  ++LL+   K+    K  ++P++ AA      
Sbjct: 35  QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94

Query: 190 V 190
           +
Sbjct: 95  M 95

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.9 bits (211), Expect = 1e-19
 Identities = 31/114 (27%), Positives = 35/114 (30%), Gaps = 32/114 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
               D N K   G +PLH AA +GH D V  LL                           
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL--------------------------- 364

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK----LVPDKFGKSPI 179
              G  PN    DG TPL  A   G+      L     +    LV DK   S  
Sbjct: 365 -KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.8 bits (234), Expect = 5e-24
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +  D         T      S+G    +             +   +P+++AA+   +   
Sbjct: 34  EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ----AESIDNPLHEAAKRGNLSWL 89

Query: 131 ----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAE 184
               D  V  N  D  G+T L++A   GH D V  L       +   +K G + ++ AA 
Sbjct: 90  RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149

Query: 185 NQQMEV 190
               ++
Sbjct: 150 KGYADI 155

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.1 bits (214), Expect = 4e-21
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 3/118 (2%)

Query: 75  PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQG 133
           P      G   +  A           L    G +        +         +  +    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-IPS 63

Query: 134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
                +      PLH AA RG+   +R  L     +   DK G + +  A      ++
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 29/115 (25%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
            ++ N ++  G T LH AA +G+AD V+ LL                             
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL----------------------------A 161

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKLVPDKFGKSPINDAAEN 185
           +G   +L++ +       A +   A  ++        + + +        D+   
Sbjct: 162 KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 6/88 (6%), Positives = 17/88 (19%), Gaps = 28/88 (31%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G   +L++ +       A +   A  ++                              
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQ--------------------------- 193

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHAD 157
                   L + +       +    H  
Sbjct: 194 -GTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 95.6 bits (239), Expect = 7e-24
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G DP L +  G + +  A +    + + +  +          G S +  A E    +V
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK----------GHSLLQAAREADLAKV 194

Query: 130 R---DQGVDPNLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKL-VPDKFGKSPINDA 182
           +      +    +     T LH A +  H         LLR G  +   +K   +P++ A
Sbjct: 195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

Query: 183 AENQQMEV 190
           AE    +V
Sbjct: 255 AERAHNDV 262

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.6 bits (226), Expect = 6e-22
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
              V+ +  DG  +TPLH AA       V+ LL                           
Sbjct: 46  PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL--------------------------- 78

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
              G D + KD  G  PLH A S GH +    LL++G  +   D +  +P+++AA   ++
Sbjct: 79  -QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137

Query: 189 EV 190
           EV
Sbjct: 138 EV 139

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 32/117 (27%), Positives = 38/117 (32%), Gaps = 29/117 (24%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G + N K+ D  TPLH AA R H D +  L                            
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH--------------------------- 267

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
              G   N  D  G T LH AA  GH    R LL YG    +    G +      E 
Sbjct: 268 -KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.9 bits (206), Expect = 4e-19
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 28/122 (22%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           D      L        L  AA  G+ + +  LL                           
Sbjct: 12  DPSAKAVLTGEYKKDELLEAARSGNEEKLMALL--------------------------- 44

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
               V+ +  DG  +TPLH AA       V+ LL++G  +   DK G  P+++A      
Sbjct: 45  TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY 104

Query: 189 EV 190
           EV
Sbjct: 105 EV 106

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
             G   N  D  G T LH AA  GH    R LL YG    +    G +      E  Q  
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI 327

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRG 154
           +  +       D D    L  A+  G
Sbjct: 328 L-SESTPMRTSDVDY--RLLEASKAG 350

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 9e-24
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 30/122 (24%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +  D +  D +G T L F A  G   CVR L                             
Sbjct: 65  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---------------------------- 96

Query: 131 DQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
           + G D + +D   G T LH AA     + V  L+  G  + V D+ G + +  A E  + 
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 156

Query: 189 EV 190
             
Sbjct: 157 TP 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.9 bits (167), Expect = 1e-14
 Identities = 15/120 (12%), Positives = 27/120 (22%), Gaps = 31/120 (25%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
             +  +   G+GA         GH+                                   
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSS---------------------------- 34

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
               D      +  TP   AA +     +  LL        D+ G++ +   A     + 
Sbjct: 35  YIAADVV---SEYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKC 91

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 105
           + G D  ++D  G T L  A            +++G
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 91.3 bits (228), Expect = 1e-23
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G DP L      + L  A S+G+ D V+ LL                           
Sbjct: 57  QNGADPQLLGKGRESALSLACSKGYTDIVKMLL--------------------------- 89

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
            D GVD N  D +G TPL +A    H  CV+ LL  G    +    G + ++ A      
Sbjct: 90  -DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148

Query: 189 EV 190
            V
Sbjct: 149 SV 150

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.5 bits (213), Expect = 2e-21
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 28/100 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           D GVD N  D +G TPL +A    H  CV+ LL                           
Sbjct: 90  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL--------------------------- 122

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 169
            + G DP ++   G   +  A + G+    + +  +  KL
Sbjct: 123 -ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.5 bits (200), Expect = 2e-19
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 29/112 (25%)

Query: 80  GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLK 139
           G  +  +H  A++G    +   +                            +Q    N  
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRI----------------------------EQENVINHT 32

Query: 140 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           D +G TPL +AA+ G    V +LL+ G    +  K  +S ++ A      ++
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.1 bits (227), Expect = 8e-23
 Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 30/122 (24%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +  D +  D +G T L F A  G   CVR L                             
Sbjct: 66  EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---------------------------- 97

Query: 131 DQGVDPNLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
           + G D + +D   G T LH AA     + V  L+  G  + V D+ G + +  A E  + 
Sbjct: 98  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 157

Query: 189 EV 190
             
Sbjct: 158 TP 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 87.3 bits (217), Expect = 2e-21
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD---Q 132
           +   G+GA         GH+        Y    V  +  ++P   AA     +      +
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWV-PSSYIAADVVSE-YETPWWTAARKADEQALSQLLE 66

Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEV 190
             D +  D +G T L F A  G   CVR L   G  L     + G + ++ AA   + EV
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.4 bits (194), Expect = 5e-18
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G D  ++D  G T L  A            +++G ++         + +    +  EV
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI--GLEKVINVLEGQVFEYAEV 189

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
                +   K G G    +    +   DC      + 
Sbjct: 190 ----DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 11/121 (9%), Positives = 23/121 (19%), Gaps = 40/121 (33%)

Query: 35  LLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGH 94
             +Q G      +   +                   +  +   K G G    +    +  
Sbjct: 162 NPMQFGRRIGLEKVINVLEG----------QVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211

Query: 95  ADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRG 154
            DC      +                              +   KD +    L +A +  
Sbjct: 212 GDCEWVKGVHVA----------------------------EDVAKDYE--DGLEYAVAES 241

Query: 155 H 155
            
Sbjct: 242 V 242

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.8 bits (224), Expect = 1e-22
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 30/123 (24%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           D     +  D +G TPL+ A      +  + L+                           
Sbjct: 27  DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI--------------------------- 59

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
            D+G D NL++    +P  +A ++G  + + ++L++    +   +++G + +  AAE   
Sbjct: 60  -DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 188 MEV 190
           ++ 
Sbjct: 119 IDN 121

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.9 bits (193), Expect = 3e-18
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 29/115 (25%)

Query: 77  LKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDP 136
           +K  +    L  A  R        L                             D     
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQ----------------------------DTTYQV 32

Query: 137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           +  D +G TPL+ A      +  + L+  G  + + +    SP   A    + E+
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.1 bits (191), Expect = 6e-18
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 33/125 (26%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
             D N  +  G   L  AA +GH D V+ LL  G                          
Sbjct: 96  TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR------------------------- 130

Query: 132 QGVDPNLKDGDGATPLHFAA-----SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 185
              D + ++  G T L  A      ++ + D V+ L+  G    + D  G++ ++ A + 
Sbjct: 131 --EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188

Query: 186 QQMEV 190
              E+
Sbjct: 189 GYTEI 193

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 33/98 (33%)

Query: 73  VDPNLKDGDGATPLHFAA-----SRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
            D + ++  G T L  A      ++ + D V+ L+                         
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM------------------------- 165

Query: 128 EVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
              + G D ++KD  G T + +A  +G+ +  + L +Y
Sbjct: 166 ---ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
           + G D ++KD  G T + +A  +G+ +  + L +Y
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.2 bits (220), Expect = 1e-22
 Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 30/120 (25%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
            V P+  +  G T L      G       LL                             
Sbjct: 26  LVHPDALNRFGKTALQVMM-FGSTAIALELL----------------------------K 56

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           QG  PN++D  G +P+H AA  G  D ++ L+ +G  + VPD  G  PI+ A +     V
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.2 bits (220), Expect = 1e-22
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 28/121 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            QG  PN++D  G +P+H AA  G  D ++ L+                           
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV--------------------------- 88

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 189
            + G D N+ DG GA P+H A   GH   V +L         D  G +P+  A +    +
Sbjct: 89  -EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQD 147

Query: 190 V 190
           +
Sbjct: 148 L 148

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.2 bits (220), Expect = 2e-22
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 30/123 (24%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G +P+LKD  G   +H AA  G  D ++ LL                           
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL--------------------------- 90

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
            +   D N++D +G  PLH AA  GH   V +L+++    V   +  G +  + A    +
Sbjct: 91  -EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 188 MEV 190
            EV
Sbjct: 150 NEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 81.7 bits (203), Expect = 6e-20
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 30/122 (24%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
              V+ N ++G G T L      G+ +  R LL                           
Sbjct: 26  QNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLL--------------------------- 57

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
             +G +P+LKD  G   +H AA  G  D ++ LL +   + + D  G  P++ AA+   +
Sbjct: 58  -LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

Query: 189 EV 190
            V
Sbjct: 117 RV 118

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 30/111 (27%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
                L  AA+RG  + +  LL                               V+ N ++
Sbjct: 4   PWGNELASAAARGDLEQLTSLL----------------------------QNNVNVNAQN 35

Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           G G T L      G+ +  R LL  G    + D+ G + I+DAA    ++ 
Sbjct: 36  GFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT 85

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.7 bits (216), Expect = 2e-22
 Identities = 29/122 (23%), Positives = 38/122 (31%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G D N     G  PLH+AA  G  + + +LL                           
Sbjct: 28  AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL--------------------------- 60

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
             +G D N  D    TPL  A   GH  CV+ LL  G    V    G +           
Sbjct: 61  -LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119

Query: 189 EV 190
            +
Sbjct: 120 AL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 7e-20
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 29/111 (26%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
                  +A   G  D V+  +                             +G D N   
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYV----------------------------AKGEDVNRTL 37

Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
             G  PLH+AA  G  + + +LL  G  +  PDK   +P+  A     +  
Sbjct: 38  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.4 bits (223), Expect = 3e-22
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G D N++D +    LH+AA  G  D    LL                           
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILL--------------------------- 164

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
                D +  +  G +PLH AA     DCV   L     + + +K G++P+  A+ N Q+
Sbjct: 165 -AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223

Query: 189 EV 190
             
Sbjct: 224 WS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.1 bits (217), Expect = 2e-21
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 30/123 (24%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + +    D  TPL  AA   H + V++L+                           
Sbjct: 32  QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI--------------------------- 64

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQ 187
              G   + KD +G+T LH AA +GH + V++LL  G   V   D  G +P+  A E + 
Sbjct: 65  -KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 188 MEV 190
           +++
Sbjct: 124 VDL 126

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.7 bits (216), Expect = 3e-21
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 29/119 (24%)

Query: 73  VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
           ++  ++  +  +PLH AA  GH D    L+                              
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLV----------------------------QA 33

Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           G + +    D  TPL  AA   H + V++L++ G  +   D  G + ++ AA+    EV
Sbjct: 34  GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 28/97 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
               D +  +  G +PLH AA     DCV   L                           
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL--------------------------- 197

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
             +  D  LK+ +G TPL  A+          + +  
Sbjct: 198 -SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.5 bits (223), Expect = 7e-22
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 29/125 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
              ++       G T LH AA++G+ + ++ L+                           
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI--------------------------- 219

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
                D N+KD DG TPLH AA  G  +  R L+     +   +K G++  + A E+   
Sbjct: 220 -QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 189 EVSTV 193
            +  +
Sbjct: 279 YLEEL 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 88.7 bits (221), Expect = 2e-21
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           ++G D N  + DG T LH A    + D V++L+                           
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLV--------------------------- 93

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQM 188
            + G + N  D +G  PLH AAS G+ D   +L+  G      +  G +P++ A E    
Sbjct: 94  -ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 189 EV 190
           E+
Sbjct: 153 EL 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 85.2 bits (212), Expect = 3e-20
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---D 131
            + D             G    +   +    K  V    G   +   +     EV    +
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           +G D N  + DG T LH A    + D V++L+  G  +  PD  G  P++ AA    +++
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.1 bits (222), Expect = 1e-21
 Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 39/132 (29%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G DP L+  +GATP   AA  G    ++  L                           
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL--------------------------- 92

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-----------GKLVPDKFGKSP 178
             +G D N  D  G T    AA  G    +++L + G            +    K G + 
Sbjct: 93  -SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

Query: 179 INDAAENQQMEV 190
           + DAAE   +EV
Sbjct: 152 LMDAAEKGHVEV 163

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 6e-21
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 70  DQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
           + G + N ++ + G TPLH A      D V  LL                          
Sbjct: 26  EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-------------------------- 59

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
               G DP L+  +GATP   AA  G    ++  L  G  +   D +G +   +AA   +
Sbjct: 60  --RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 188 MEV 190
           ++ 
Sbjct: 118 VKA 120

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 44/173 (25%)

Query: 35  LLVQHG---TLPDYHEEAKLHGKLHGCT-----CRKG--ESTK--VRDQGVDPNLKDGDG 82
            L + G    L    +E +   +  G T       KG  E  K  + + G D N  D  G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 83  ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
              L  A        V  +      L+                     D G D N++   
Sbjct: 183 RNALIHALLSSDDSDVEAITHL---LL---------------------DHGADVNVRGER 218

Query: 143 GATPLHFAASRGHADCVRWLLRYGG-----KLVPDKFGKSPINDAAENQQMEV 190
           G TPL  A  + H   V+ LL             D  GK+ +  A E +  ++
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT---DSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 27/97 (27%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           D G D N++   G TPL  A  + H   V+ LL                           
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE------------------------ 242

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
               ++ N  D DG T L  A           L + G
Sbjct: 243 ---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.9 bits (180), Expect = 9e-16
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 30/112 (26%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +    L  A      D V+ LL                            + G + N ++
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL----------------------------EGGANVNFQE 35

Query: 141 GD-GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            + G TPLH A      D V  LLR+G    +  K G +P   AA    +++
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 2e-21
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 31/121 (25%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
               ++  G     L  AA+RG  + VR LL                            +
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLL----------------------------E 33

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK-SPINDAAENQQME 189
            G DPN  +  G  P+      G A     LL +G +    D      P++DAA    ++
Sbjct: 34  AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD 92

Query: 190 V 190
            
Sbjct: 93  T 93

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.9 bits (206), Expect = 1e-20
 Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 29/98 (29%)

Query: 70  DQGVDPNLKDGDGAT-PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
             G +PN  D    T P+H AA  G  D +  L                           
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-------------------------- 98

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
               G   ++ D  G  P+  A  +GH D  R+L    
Sbjct: 99  --RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 85.2 bits (212), Expect = 2e-21
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 33/122 (27%)

Query: 70  DQGVDPNLKDGDGAT-PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
             G +PN  D    T P+H AA  G  D +  L                           
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-------------------------- 98

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
               G   +++D  G  P+  A   GH D  R+L    G       G +     A     
Sbjct: 99  --RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAAEGPS 152

Query: 189 EV 190
           ++
Sbjct: 153 DI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.0 bits (201), Expect = 8e-20
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 33/123 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           +     +++       L  AA+RG  + VR LL                           
Sbjct: 2   EPAAGSSMEPSA--DWLATAAARGRVEEVRALL--------------------------- 32

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK-SPINDAAENQQ 187
            + G +PN  +  G  P+      G A     LL +G +    D      P++DAA    
Sbjct: 33  -EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90

Query: 188 MEV 190
           ++ 
Sbjct: 91  LDT 93

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 88.8 bits (221), Expect = 3e-21
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 29/119 (24%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
            ++    D +    +H AA +G  D VR L+                            +
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLI----------------------------E 41

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
            GV P +++  G T LH A   G  D  ++L   G        G+ PI+ A    + ++
Sbjct: 42  TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-HSLWHGQKPIHLAVMANKTDL 99

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 8e-20
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 42/140 (30%)

Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 124
            T      +  +  +  G + LH+A      D     +                      
Sbjct: 194 DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV---------------------- 231

Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK--------------LV 170
                 + G+D N++D +   PL+ +         + LL+                  L 
Sbjct: 232 ------EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285

Query: 171 PDKFGKSPINDAAENQQMEV 190
                   +  AA+  + EV
Sbjct: 286 DRVVWLDFVPAAADPSKQEV 305

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 70  DQGVDPNLKDGDGATPLHFAA------------SRGHADCVRWLLRYGGK--LVPDKFGK 115
           + G+D N++D +   PL+ +              +     ++    + G   L       
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 116 SPINDAAENQQMEV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
             +  AA+  + EV    +++  +       GA        +      R  L     +  
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 171 PDKFGKSPIN 180
             +       
Sbjct: 352 RSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.2 bits (204), Expect = 7e-19
 Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 42/158 (26%)

Query: 70  DQGVDPNLKDG-------------------------DGATPLHFAASRGHADCVRWLLRY 104
             G   +L  G                          G  P          +        
Sbjct: 74  SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE----- 128

Query: 105 GGKLVPDKFGKSPINDAAENQQMEVR------DQGVDPNLKDGDGATPLHFAASRGHADC 158
            G  V    G++ ++         +         G  P  KD    TPL  A    + + 
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188

Query: 159 VRWLLRYGGKL------VPDKFGKSPINDAAENQQMEV 190
           +  ++              +K G S ++ A      +V
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 5/84 (5%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV- 129
           G             +  AA     + ++ L     ++      G        +     V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 130 ---RDQGVDPNLKDGDGATPLHFA 150
                       +    A     +
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 4e-21
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
             +  G      +         LH    R+G  + V      G DP+L DG+G + +H A
Sbjct: 60  YYISKG--AIVDQLGGDLNSTPLH-WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

Query: 90  ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
           A  GH   V +L+                             +G D ++ D +G TPL +
Sbjct: 117 AQFGHTSIVAYLI----------------------------AKGQDVDMMDQNGMTPLMW 148

Query: 150 AASRGH-ADCVRWLLRYGGKL-VPDKF-GKSPINDAAENQQMEV 190
           AA R H  D  R LL +   + + DK+   + ++ A       V
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 30/117 (25%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
              D      +  A   G  +  R L+                            + G D
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELV----------------------------EAGYD 34

Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEV 190
               D +  T LH+AA     D V++ +  G  +  +      +P++ A     + +
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM 91

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 29/98 (29%)

Query: 70  DQGVDPNLKD-GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
              V  NL D     T LH+A   G+   +  LL                          
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-------------------------- 197

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
             + G + + ++  G + L  A  R +   +  L    
Sbjct: 198 --EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFA 89
           LL+        +   K H    LH      G +T +    + G + + ++  G + L  A
Sbjct: 161 LLLTFN--VSVNLGDKYHKNTALH-WAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217

Query: 90  ASRGHADCVRWLLRYG 105
             R +   +  L    
Sbjct: 218 KQRKNVWMINHLQEAR 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 87.2 bits (217), Expect = 5e-21
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 31/121 (25%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
              D    D  G +  ++A +  +   V  LL                            
Sbjct: 20  SSKDTFKADVHGHSASYYAIADNNVRLVCTLL---------------------------- 51

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 189
           + G   NL + +   PLH AA+      V+ LL  G      D  G + +  A ++  M+
Sbjct: 52  NAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109

Query: 190 V 190
            
Sbjct: 110 T 110

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.1 bits (209), Expect = 6e-20
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 32/123 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G   NL + +   PLH AA+      V+ LL                           
Sbjct: 52  NAGALKNLLENE--FPLHQAATLEDTKIVKILL--------------------------- 82

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQQ 187
              G+D +  D  G T L++A   G+   V+  ++   +L    K G K+    A     
Sbjct: 83  -FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 188 MEV 190
           + +
Sbjct: 142 VSI 144

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 35/118 (29%)

Query: 74  DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQG 133
                     + +H     GH D +  LL                            D  
Sbjct: 153 PSTFDLAILLSCIHITIKNGHVDMMILLL----------------------------DYM 184

Query: 134 VDPNLKDGDGATP-LHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 190
              N  +     P +  A      + ++ L +Y           S   +       E+
Sbjct: 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN------IYSANLENVLLDDAEI 236

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 81.2 bits (202), Expect = 1e-20
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 28/97 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G D N KD +G TPLH AA  GH + V+ LL                           
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--------------------------- 55

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
            + G D N KD +G TPLH AA  GH + V+ LL  G
Sbjct: 56  -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.2 bits (194), Expect = 2e-19
 Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 29/111 (26%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +G TPLH AA  GH + V+ LL                            + G D N KD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL----------------------------EAGADVNAKD 32

Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            +G TPLH AA  GH + V+ LL  G  +   DK G++P++ AA N  +EV
Sbjct: 33  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.5 bits (202), Expect = 1e-20
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 32/122 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G        D    L  AA  G  D VR L+                           
Sbjct: 15  PRGSHMG---SDLGKKLLEAARAGQDDEVRILM--------------------------- 44

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KLVPDKFGKSPINDAAENQQM 188
              G D   KD +G+TPLH AA  GH + V+ LL  G      DKFGK+  + + +N   
Sbjct: 45  -ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE 103

Query: 189 EV 190
           ++
Sbjct: 104 DL 105

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 28/93 (30%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G D   KD +G+TPLH AA  GH + V+ LL                           
Sbjct: 45  ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL--------------------------- 77

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
            + G D   +D  G T    +   G+ D    L
Sbjct: 78  -EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 5e-20
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 28/97 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G D N KD +G TPLH AA  GH + V+ LL                           
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--------------------------- 88

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
            + G D N KD +G TPLH AA  GH + V+ LL  G
Sbjct: 89  -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 76.6 bits (190), Expect = 2e-18
 Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 29/111 (26%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +G TPLH AA  GH + V+ LL                            + G D N KD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL----------------------------EAGADVNAKD 32

Query: 141 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            +G TPLH AA  GH + V+ LL  G  +   DK G++P++ AA N  +EV
Sbjct: 33  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.3 bits (197), Expect = 1e-19
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 29/110 (26%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G D N +  DG TPLH AA  GHA+ V+ LL                           
Sbjct: 30  SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--------------------------- 62

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP 178
             +G D N +  DG TP H A   GH + V+ L   G  +          
Sbjct: 63  -AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.8 bits (193), Expect = 5e-19
 Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 29/116 (25%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
                DG TPLH AA  GHA+ V+ LL                             +G D
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLL----------------------------SKGAD 34

Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            N +  DG TPLH AA  GHA+ V+ LL  G  +    K G +P + A +N   E+
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.5 bits (148), Expect = 2e-12
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 28/79 (35%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            +G D N +  DG TP H A   GH + V+ L                            
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD--------------------------- 95

Query: 130 RDQGVDPNLKDGDGATPLH 148
             +G D N +    +   H
Sbjct: 96  -AKGADVNARSWGSSHHHH 113

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 80.1 bits (199), Expect = 4e-19
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 29/122 (23%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           +       KD +G+T L +A           LL                           
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL--------------------------- 88

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
             +G + N KD  G TPL ++   G+++   +LL +G  +   +  G++P+  A++  + 
Sbjct: 89  -SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 189 EV 190
           E+
Sbjct: 148 EI 149

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.6 bits (195), Expect = 2e-18
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 10/120 (8%)

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR----D 131
           +  D +G         +     + +L  Y      D + ++P+  A             +
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
                  KD +G+T L +A           LL  G  +   D  GK+P+  +      E+
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 4e-16
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 28/94 (29%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           + G + N ++ +G TPL  A+  G ++ V+ LL                           
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLL--------------------------- 154

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
            + G D + +D  G T    A   G  + ++   
Sbjct: 155 -ELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 19/120 (15%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
                 +   G + LH A  +    CV+ L+  G               A  + +   R 
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG---------------ADVHLRACGRF 124

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP----DKFGKSPINDAAENQQ 187
                      G  PL  AA     D V +LL    +       D  G + ++       
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 36/140 (25%)

Query: 69  RDQGVDPNLKDGDGATPLHFAA---SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN 124
           +        +   G T L  A      G   C+  LL+       P     +   D    
Sbjct: 30  KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD---- 85

Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------GKLV 170
                         +   G + LH A  +    CV+ L+  G               +  
Sbjct: 86  --------------EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGT 131

Query: 171 PDKFGKSPINDAAENQQMEV 190
              FG+ P++ AA  +Q +V
Sbjct: 132 CFYFGELPLSLAACTKQWDV 151

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 20/102 (19%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV- 129
           Q       D  G T LH                       +    S +     +  +++ 
Sbjct: 161 QPASLEATDSLGNTVLHALVMIAD----------------NSPENSALVIHMYDGLLQMG 204

Query: 130 ---RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
                      + +  G TPL  AA  G  +  R +L+    
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 35/122 (28%)

Query: 84  TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
             L    SRG  + +  LL Y                     +   +        +   G
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYL--------------------RWNSKYLTDSAYTEGSTG 43

Query: 144 ATPLHFAA---SRGHADCVRWLLRYGGKLVP------------DKFGKSPINDAAENQQM 188
            T L  A      G   C+  LL+                      G S ++ A E + +
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 189 EV 190
           + 
Sbjct: 104 QC 105

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
                  + +  G TPL  AA  G  +  R +L+    
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query: 72  GVDPNLKDGDGATPLHFAA----SRGHADCVR--------WLLRYGGKLVP--DKFGKSP 117
                L+D    T LH         G +   +        W+++   + +       +S 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 118 INDAAENQQMEV-------RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL- 169
            ND    ++  +              N +D +G T L+ AA  G+   V  LL YG    
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310

Query: 170 VPDKFGKSPINDAAEN 185
           + +K G  P++  A  
Sbjct: 311 IANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.4 bits (177), Expect = 2e-15
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 34/122 (27%)

Query: 70  DQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME 128
           +  ++ N+  D  G TPLH+  S  + + V+ L+                          
Sbjct: 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-------------------------- 151

Query: 129 VRDQGVDPNLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKLV--PDKFGKSPINDAA 183
               G +    D  G + L  A    +         LL Y    +   D   ++ ++   
Sbjct: 152 --KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

Query: 184 EN 185
             
Sbjct: 210 IT 211

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 33/131 (25%)

Query: 26  RLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-----VRDQGVDPNLKDG 80
           +  L   +  +V+    P      +   K +     + +S               N +D 
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +G T L+ AA  G+   V  LL                            D G DP + +
Sbjct: 282 NGDTCLNIAARLGNISIVDALL----------------------------DYGADPFIAN 313

Query: 141 GDGATPLHFAA 151
             G  P+ F A
Sbjct: 314 KSGLRPVDFGA 324

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 73.7 bits (181), Expect = 3e-16
 Identities = 28/140 (20%), Positives = 39/140 (27%), Gaps = 36/140 (25%)

Query: 70  DQGVDPNLKDGD-GATPLHFA---ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 125
            +  D   KD + G T L  A      G  D +  LL    K    K             
Sbjct: 41  KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK------------- 87

Query: 126 QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG---------------GKLV 170
               +            G T LH A  R +   V  L+  G                   
Sbjct: 88  ----QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRP 143

Query: 171 PDKFGKSPINDAAENQQMEV 190
              FG+ P++ AA   Q+ +
Sbjct: 144 GFYFGELPLSLAACTNQLAI 163

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 42/137 (30%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +          G  PL  AA       V++LL+                           
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW------------------------ 172

Query: 131 DQGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYGGKL--------VPDK 173
            Q  D + +D  G T LH                      +L  G KL        + ++
Sbjct: 173 -QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231

Query: 174 FGKSPINDAAENQQMEV 190
            G +P+  AA + ++ V
Sbjct: 232 KGLTPLALAASSGKIGV 248

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 18/115 (15%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           Q  D + +D  G T LH                          G             ++ 
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA------------KLH 220

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 185
                  + +  G TPL  AAS G    + ++L+               + AA +
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------IHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 37/135 (27%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
                         +  A ++ +   +  LL +  +                        
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK---------------------K 41

Query: 132 QGVDPNLKDGD-GATPLHFA---ASRGHADCVRWLLRYGGKLVP------------DKFG 175
           +  D   KD + G T L  A      G  D +  LL    K                  G
Sbjct: 42  RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101

Query: 176 KSPINDAAENQQMEV 190
           ++ ++ A E + M +
Sbjct: 102 QTALHIAIERRNMTL 116

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 35/91 (38%)

Query: 67  KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQ 126
           K+        + +  G TPL  AAS G    + ++L+                       
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------------------- 254

Query: 127 MEVRDQGVDPNLKDGDGATPLHFAASRGHAD 157
                       ++       H AA   H  
Sbjct: 255 ------------REIHEPECRHAAAHHHHHH 273

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 29/144 (20%), Positives = 39/144 (27%), Gaps = 41/144 (28%)

Query: 70  DQGVDPNLKDG----DGATPLHFAA---SRGHADCVRWLLRYGGKLV-PDKFGKSPINDA 121
                   ++      G T L  A    S G  D +  LL    K     +F  SP  D 
Sbjct: 30  THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD- 88

Query: 122 AENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG--------------- 166
                                G T LH A  R     V  L+  G               
Sbjct: 89  -----------------VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPK 131

Query: 167 GKLVPDKFGKSPINDAAENQQMEV 190
            +     FG+ P++ AA   Q  +
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHI 155

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 56/152 (36%)

Query: 70  DQGVDPNLKD--------------GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGK 115
           ++G D + +                 G  PL  AA       V +L   G          
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG---------- 163

Query: 116 SPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYG 166
                           +  D   +D  G T LH   +                  LL   
Sbjct: 164 ---------------HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 167 GKL--------VPDKFGKSPINDAAENQQMEV 190
            KL        + +  G SP+  AA+  ++ +
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 12/98 (12%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVR 130
           +  D   +D  G T LH   +                    KF     +        ++ 
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIAD-----------NTRENTKFVTKMYDLLLIKCA-KLF 212

Query: 131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 168
                  L + DG +PL  AA  G     + ++R    
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 67  KVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK 107
           K+        L + DG +PL  AA  G     + ++R    
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 15/124 (12%), Positives = 26/124 (20%), Gaps = 35/124 (28%)

Query: 70  DQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
           +      +     +       AA  GH   +  L                  +A      
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP------------TEATAM--- 193

Query: 128 EVRDQGVDPNLKDGDGATPLHFAASR-GHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ 186
                         +      +AA   GH + + +LL     L              E  
Sbjct: 194 -----------IQAENYYAFRWAAVGRGHHNVINFLLDCPVML------AYAEIHEFEYG 236

Query: 187 QMEV 190
           +  V
Sbjct: 237 EKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.2 bits (143), Expect = 9e-11
 Identities = 19/132 (14%), Positives = 28/132 (21%), Gaps = 40/132 (30%)

Query: 76  NLKDGDGATPLHFAASRGHA---DCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQ 132
           + K          AA  G +   D +  LL                              
Sbjct: 86  HKKGIKSEVICFVAAITGCSSALDTLCLLL----------------------------TS 117

Query: 133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV---PDKFGKSPINDAAENQQME 189
                +   +       AA  GH   +  L       +              AAEN  + 
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 190 VSTVSPVVRRLL 201
                 V+ RL 
Sbjct: 178 ------VLNRLC 183

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 14/122 (11%), Positives = 25/122 (20%), Gaps = 22/122 (18%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD--------- 131
           +       +   G  D V               G   + +        + D         
Sbjct: 253 EMHDAFKLSNPDGVFDLVTKS--------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 132 ---QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 188
                       GD    L  A   G+      LL     L   K   +         ++
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK--ANNYYINETGGRL 362

Query: 189 EV 190
           ++
Sbjct: 363 DL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 12/92 (13%), Positives = 17/92 (18%), Gaps = 20/92 (21%)

Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAEN 124
           S              GD    L  A   G+      LL               +    + 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS-----------VLALTKA 350

Query: 125 QQMEVRDQGVDPNLKDGDGATPLHFAASRGHA 156
               + +           G   L   A   H 
Sbjct: 351 NNYYINET---------GGRLDLRAVALEHHH 373

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 29/93 (31%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
           G   + K  DG T LH+AA     DC++ LL+                            
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA------------------------- 250

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLR 164
                   +  G T L  A  + H +C   LL 
Sbjct: 251 ---LVGTVNEAGETALDIARKKHHKECEE-LLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 32/113 (28%)

Query: 79  DGDGATPLHFAASRGHADC---VRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
                  LH A    +      V ++++ GG                             
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGG----------------------------H 218

Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ 187
            + K  DG T LH+AA     DC++ LL+    +   ++ G++ ++ A +   
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 12/75 (16%)

Query: 35  LLVQHGTLPDYHEEAKLHGK--LHGCTCRKGESTKVRDQ----GVDPNLKDGDGATPLHF 88
            ++Q+G   D        G   LH                          +  G T L  
Sbjct: 211 FIIQNGGHLDAKAA---DGNTALHYAALYN--QPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 89  AASRGHADCVRWLLR 103
           A  + H +C   LL 
Sbjct: 266 ARKKHHKECEE-LLE 279

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 6e-12
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 28/94 (29%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
             + + + G G+T LH+     +A+C++ LLR                            
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA------------------------- 229

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
                 + +  G TPL  A    H  C   L + 
Sbjct: 230 ---SIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 9e-10
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 32/118 (27%)

Query: 79  DGDGATPLHFAASRGHADCVR---WLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVD 135
                T LH A        +    +L++  G                            +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSG----------------------------N 197

Query: 136 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVST 192
            + + G G+T LH+     +A+C++ LLR    + + ++ G++P++ A   +      
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 19  QAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR---DQGVDP 75
            A    DR  L      LVQ+    D  +  K    LH C C    +  ++         
Sbjct: 175 LAVRSVDRTSLHIVD-FLVQNSGNLD-KQTGKGSTALHYC-CLTDNAECLKLLLRGKASI 231

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRY 104
            + +  G TPL  A    H  C   L + 
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQA 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 8e-10
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 72  GVDPNLKDG--DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           G D N  +G  D ATPL  A +        +LL+ G  +   D  G+ P++ A       
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG 282

Query: 129 VRD----QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAE 184
           +      +G D   +D +G  PL  A    +AD V  L     +      G++      +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 38/126 (30%)

Query: 71  QGVDPNLK------DGDGATPLHFA---ASRGHADCVRWLLRYGGKLVPDKFGKSPINDA 121
            G D                 LH A   A++     V ++++ GG               
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG--------------- 198

Query: 122 AENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIN 180
                          + K  DG T LH+AA     DC++ LL+    +   ++ G++ ++
Sbjct: 199 -------------HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 245

Query: 181 DAAENQ 186
            A +  
Sbjct: 246 IARKKH 251

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 28/91 (30%)

Query: 72  GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRD 131
           G   + K  DG T LH+AA     DC++ LL+                            
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKG--------------------------- 229

Query: 132 QGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
                   +  G T L  A  + H +C   L
Sbjct: 230 -RALVGTVNEAGETALDIARKKHHKECEELL 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-37  Score=226.77  Aligned_cols=185  Identities=21%  Similarity=0.270  Sum_probs=162.2

Q ss_pred             CcceeehccCChhHHHHHhhccchhh--------------------------HHHHHHHHHHcCCCCCchhhcccchhhh
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM--------------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLH   56 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~--------------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~   56 (207)
                      +||+.||.+|+.++|+.|++.+....                          ...+++.|+++|+++|..+..|.+|+++
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~   92 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV   92 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            68999999999999999998665310                          1247899999999999999999999999


Q ss_pred             hhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hh
Q psy14140         57 GCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VR  130 (207)
Q Consensus        57 a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~  130 (207)
                      |+..++..++. |++.|++++..+..|.||+++|+..++.+++++|++.|+++ .+|..|.||||+|+..|+.+    |+
T Consensus        93 A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll  172 (269)
T 4b93_B           93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL  172 (269)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999988877 77999999999999999999999999999999999999999 99999999999999999876    67


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCC
Q psy14140        131 DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ  187 (207)
Q Consensus       131 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~  187 (207)
                      +.|++++..+..|.||||+|+..|+.+++++|+++|+++ .+|..|+||||+|+++++
T Consensus       173 ~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            899999999999999999999999999999999999999 699999999999987764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.8e-36  Score=221.86  Aligned_cols=194  Identities=20%  Similarity=0.244  Sum_probs=151.9

Q ss_pred             CCcceeehccC-------------ChhHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcc
Q psy14140          2 AHPLFIRAVSG-------------DVKCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAK   50 (207)
Q Consensus         2 ~tpl~~Aa~~g-------------~~~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~   50 (207)
                      .||||+|+.+|             +.++++.+++.+....                  ..+++++|+++|++++..+..+
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g   90 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG   90 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            48999999988             8999998887655421                  1379999999999999999999


Q ss_pred             cchhhhhhhccCCchHH-HHhcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH
Q psy14140         51 LHGKLHGCTCRKGESTK-VRDQGV-DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM  127 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~  127 (207)
                      .+|++.|+..++..+.. |++.+. +++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  170 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV  170 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999888776 667776 89999999999999999999999999999999998 8899999999999999987


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHH
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSP  195 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~  195 (207)
                      +    |++.|++++..+..|.||||+|+..|+.+++++|+++|+++ .++..|+||+++|+++|+.+++++|.
T Consensus       171 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            7    56899999999999999999999999999999999999999 68999999999999999999976664

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.7e-36  Score=221.97  Aligned_cols=184  Identities=21%  Similarity=0.264  Sum_probs=127.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCC---CCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTL---PDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL   77 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~---~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~   77 (207)
                      .||||+|+..|+.++                +++|+++|++   ++..+..+.+|+++|+..++..++. |++.|++++.
T Consensus        10 ~t~L~~A~~~g~~~~----------------v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~   73 (282)
T 1oy3_D           10 DTALHLAVIHQHEPF----------------LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV   73 (282)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CcHHHHHHHcCCHHH----------------HHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            489999999999986                5555555555   5566666777777777777666655 5577777777


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------------------c-C
Q psy14140         78 KDGDGATPLHFAASRGHADCVRWLLRYGGK-----------------------------------------------L-V  109 (207)
Q Consensus        78 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~-~  109 (207)
                      ++..|.||||+|+..++.+++++|++.+..                                               + .
T Consensus        74 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (282)
T 1oy3_D           74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (282)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC
Confidence            777777777777777777777777766543                                               2 3


Q ss_pred             CCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCC-CCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        110 PDKFGKSPINDAAENQQME----VRDQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      .+..|.||||+|+..++.+    |++.|++++..+.. |.||||+|+..|+.+++++|+++|+++ .++..|+||||+|+
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHH
Confidence            4556777777777777665    44567777766643 777777777777777777777777777 56667777777777


Q ss_pred             HcCCcceeehHHHHHHHhhcccCC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..++.++      ++.|++.|++|
T Consensus       234 ~~~~~~~------v~~Ll~~ga~~  251 (282)
T 1oy3_D          234 LRPNPIL------ARLLRAHGAPE  251 (282)
T ss_dssp             TSSCHHH------HHHHHHTTCCC
T ss_pred             HcCCcHH------HHHHHHcCCCc
Confidence            7776665      56666666654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.5e-35  Score=214.01  Aligned_cols=195  Identities=21%  Similarity=0.297  Sum_probs=176.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG   63 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~   63 (207)
                      .||||.|+.+|+.+.++.+++......                  ..+++++|+++|++++..+..+.+|++.|+..++.
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   86 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD   86 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Confidence            479999999999999999887654311                  13899999999999999999999999999999998


Q ss_pred             chHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCC
Q psy14140         64 ESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPN  137 (207)
Q Consensus        64 ~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~  137 (207)
                      .+.. |++.|++++.++..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.+    +++.|++++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A           87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Confidence            8776 77999999999999999999999999999999999999999 88999999999999999887    567999999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                      ..+..|.||||+|+..++.+++++|+++|+++ .++..|+|||++|...++.+++++|..
T Consensus       167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            99999999999999999999999999999999 689999999999999988888555543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=217.86  Aligned_cols=183  Identities=25%  Similarity=0.302  Sum_probs=112.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+||..|+.++                +++|+++|++++..+..+.+|+++|+..++..+.. |++.|++++..|.
T Consensus        60 ~t~L~~Aa~~g~~~~----------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  123 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLS----------------LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA  123 (285)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence            489999999999986                55555556666666666666666666655555544 4455666666666


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHA  156 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~  156 (207)
                      .|.||||+|+..++.+++++|++.|.++..+..|.||||+|+..++.+    +++.|.+++..+..|.||||+|+..|+.
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  203 (285)
T 3d9h_A          124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR  203 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            666666666666666666666666655533344666666666666554    3455666666666666666666666666


Q ss_pred             HHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        157 DCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       157 ~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      +++++|++.|+++..+..|.||||+|+..++.++      ++.|++.|++
T Consensus       204 ~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~~gad  247 (285)
T 3d9h_A          204 ACVKKLLESGADVNQGKGQDSPLHAVVRTASEEL------ACLLMDFGAD  247 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHH------HHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHH------HHHHHHCCCC
Confidence            6666666666665445556666666666665554      4444444444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.7e-35  Score=215.57  Aligned_cols=200  Identities=22%  Similarity=0.253  Sum_probs=168.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      .||||+|+..|+.++++.+++.+....                 ..+++++|+++|++++..+..+.+|++.|+..++..
T Consensus        40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  119 (285)
T 1wdy_A           40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK  119 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH
Confidence            378888888888888888887665421                 137888899999888888888888888888888877


Q ss_pred             hHH-HHhcCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcCh----H
Q psy14140         65 STK-VRDQGVDPNLK----------DGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQ----M  127 (207)
Q Consensus        65 ~~~-ll~~g~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~----~  127 (207)
                      +.. |++.|++++..          +..|.||||+|+..++.+++++|++. +.++ ..+..|.||+|+|+..+.    .
T Consensus       120 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  199 (285)
T 1wdy_A          120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE  199 (285)
T ss_dssp             HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred             HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH
Confidence            766 67888888877          67788999999999999999999887 7777 888889999999988777    4


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHh
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLL  201 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll  201 (207)
                      +    +++.|++++..+..|.||||+|+..|+.+++++|++ .|+++ .++..|+||||+|+..++.++      ++.|+
T Consensus       200 ~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i------~~~Ll  273 (285)
T 1wdy_A          200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI------AELLC  273 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH------HHHHH
Confidence            4    567899999999999999999999999999999998 78888 688899999999999998887      78888


Q ss_pred             hcccCC
Q psy14140        202 TIQKVP  207 (207)
Q Consensus       202 ~~~~~p  207 (207)
                      +.|++|
T Consensus       274 ~~Ga~~  279 (285)
T 1wdy_A          274 KRGAST  279 (285)
T ss_dssp             HHSSCS
T ss_pred             HcCCCC
Confidence            888876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.3e-35  Score=208.71  Aligned_cols=183  Identities=19%  Similarity=0.240  Sum_probs=168.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCC-CCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGV-DPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~-~~~~~~   79 (207)
                      .||||+|+.+|+.++                +++|+++|++++..+..+.+|++.|+..++..+.. |++.+. +++..+
T Consensus        26 ~t~L~~A~~~g~~~~----------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   89 (223)
T 2f8y_A           26 ETALHLAARYSRSDA----------------AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM   89 (223)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC
T ss_pred             CchHHHHHHcCCHHH----------------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            489999999999874                88899999999999999999999999999988877 667776 899999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      ..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..++.+    +++.|++++..+..|.||||+|+..+
T Consensus        90 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  169 (223)
T 2f8y_A           90 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG  169 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcC
Confidence            99999999999999999999999999999 88999999999999999887    56789999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        155 HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       155 ~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      +.+++++|+++|+++ .++..|.||+++|+..++.++      ++.|++.|+.
T Consensus       170 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i------~~~L~~~g~~  216 (223)
T 2f8y_A          170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI------VRLLDEYNLV  216 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH------HHHHHHTTCS
T ss_pred             CHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHH------HHHHHHcCCC
Confidence            999999999999999 688999999999999999998      6666776654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5.1e-35  Score=211.33  Aligned_cols=177  Identities=23%  Similarity=0.279  Sum_probs=159.4

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHc-CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCC----
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQH-GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDP----   75 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~-g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~----   75 (207)
                      .||||+|+..|+.++                ++.|++. |++++..+..+.+|++.|+..++..+.. |++.|+++    
T Consensus         4 ~t~L~~A~~~g~~~~----------------v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~   67 (232)
T 2rfa_A            4 ESPLLLAAKENDVQA----------------LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP   67 (232)
T ss_dssp             TCHHHHHHHTTCHHH----------------HHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc
Confidence            589999999999985                7778876 9999999999999999999999988776 77888887    


Q ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCC-------------CCCcHHHHHHhcChHH----HhhcCCCC
Q psy14140         76 -NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK-------------FGKSPINDAAENQQME----VRDQGVDP  136 (207)
Q Consensus        76 -~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~-------------~g~~~l~~a~~~~~~~----l~~~~~~~  136 (207)
                       +..|..|.||||+|+..++.+++++|++.|.++ ..+.             .|.||||+|+..++.+    |++.|+++
T Consensus        68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  147 (232)
T 2rfa_A           68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI  147 (232)
T ss_dssp             CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence             777889999999999999999999999999988 5544             7999999999999887    56899999


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHH----HHHHHhCCCc-------cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        137 NLKDGDGATPLHFAASRGHADCV----RWLLRYGGKL-------VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       137 ~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~g~~~-------~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      +..|..|.||||+|+..++.+++    ++|+++|+++       .++..|+||||+|+..|+.+++++|
T Consensus       148 ~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~L  216 (232)
T 2rfa_A          148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL  216 (232)
T ss_dssp             TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999988    9999999876       4788999999999999999985444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.7e-34  Score=208.49  Aligned_cols=190  Identities=26%  Similarity=0.400  Sum_probs=111.8

Q ss_pred             CCcceeehccCChhHHHHHhhc----cch-----------------hhHHHHHHHHHHcCCCCCchhhcccchhhhhhhc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSM----GDR-----------------LMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTC   60 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~----~~~-----------------~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~   60 (207)
                      .||||+|+.+|+.++++.+++.    +..                 ....+++++|+++|++++..+..+.+|++.|+..
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   89 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH   89 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            4899999999999998876652    111                 0012555666666666655555555566555555


Q ss_pred             cCCchHH-HHhcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC-CCCCcHHHHHHhcChHH----H
Q psy14140         61 RKGESTK-VRDQGV----DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD-KFGKSPINDAAENQQME----V  129 (207)
Q Consensus        61 ~~~~~~~-ll~~g~----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~-~~g~~~l~~a~~~~~~~----l  129 (207)
                      ++..+.. |++.+.    +++..+..|.||||+|+..++.+++++|++.|.++ ..+ ..|.||||+|+..++.+    +
T Consensus        90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (241)
T 1k1a_A           90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL  169 (241)
T ss_dssp             TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence            5555444 444444    55555555666666666666666666666665555 333 45556666666555554    3


Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCccee
Q psy14140        130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVS  191 (207)
Q Consensus       130 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~  191 (207)
                      ++.|++++..+..|.||||+|+..|+.+++++|+++|+++ .++..|+|||++|+..|+.+++
T Consensus       170 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            3455555555556666666666666666666666666655 4555566666666555555553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.7e-34  Score=209.20  Aligned_cols=189  Identities=24%  Similarity=0.306  Sum_probs=163.4

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      .||||+|+..|+.++++.+++.+....                 ..+++++|+++|++++..+..+.+|++.|+..++..
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   91 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE   91 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            489999999999999999888765421                 137899999999999988888899999988888877


Q ss_pred             hHH-HHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCC
Q psy14140         65 STK-VRDQG-VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPN  137 (207)
Q Consensus        65 ~~~-ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~  137 (207)
                      +.. |++.| .+++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.+    +++.|++++
T Consensus        92 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  171 (237)
T 3b7b_A           92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH  171 (237)
T ss_dssp             HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            776 66777 788888889999999999999999999999999888 88888999999999988877    567889999


Q ss_pred             CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        138 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      ..+..|.||||+|+..++.+++++|+++|+++ .++..|+|||++|+.+++.+.
T Consensus       172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~  225 (237)
T 3b7b_A          172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS  225 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred             CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999999999998 688889999999998887653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-35  Score=215.29  Aligned_cols=188  Identities=19%  Similarity=0.229  Sum_probs=167.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+..|+.++++.+++.+..            .++++|..+..+.+|++.|+..++..+.. |++.|++++.+|.
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   76 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKG------------DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF   76 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhc------------cHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            4899999999999987776666554            56789999999999999999999988877 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCC------c-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCC-CCCcHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGK------L-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDG-DGATPLH  148 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~------~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~-~g~t~l~  148 (207)
                      .|.||||+|+..++.+++++|++.+..      . ..+..|.||||+|+..++.+    |++.|++++..+. .|.||||
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  156 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH  156 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999864      2 67888999999999999887    5689999999997 9999999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        149 FAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      +|+..|+.+++++|+++|+++ .++..|+|||++|+..++.++      ++.|++.|++|
T Consensus       157 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~------~~~Ll~~ga~~  210 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI------QQQLGQLTLEN  210 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHH------HHHHHTTSCGG
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHH------HHHHHHcchhh
Confidence            999999999999999999999 689999999999999999987      77888888754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-34  Score=225.32  Aligned_cols=171  Identities=27%  Similarity=0.382  Sum_probs=90.8

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      +++++|+++|++++..+..+.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..|+.+++++|++.+.++ 
T Consensus       193 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  272 (437)
T 1n11_A          193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN  272 (437)
T ss_dssp             HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence            4455555555555554445555555555544444433 44555555555555555555555555555555555555555 


Q ss_pred             CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        109 VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      ..+..|.||||+|+..++.+    +++.|++++..+..|.||||+|+..|+.+++++|+++|+++ .++..|+||||+|+
T Consensus       273 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~  352 (437)
T 1n11_A          273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA  352 (437)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            45555555555555555544    33455555555555555555555555555555555555555 35555555555555


Q ss_pred             HcCCcceeehHHHHHHHhhcccCC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..|+.++      ++.|++.|++|
T Consensus       353 ~~g~~~i------v~~Ll~~ga~~  370 (437)
T 1n11_A          353 QQGHTDI------VTLLLKNGASP  370 (437)
T ss_dssp             HTTCHHH------HHHHHHTTCCS
T ss_pred             HCChHHH------HHHHHHCcCCC
Confidence            5555544      44455555443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3e-35  Score=215.66  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=160.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCc----hhhcccchhhhhhhc---cCCchHH-HHhcCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDY----HEEAKLHGKLHGCTC---RKGESTK-VRDQGV   73 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~----~~~~~~~~~~~a~~~---~~~~~~~-ll~~g~   73 (207)
                      .||||.|+..|+.++++            .++++|+++|++++.    .+..+.+|+++|+..   ++..+.. |++.|+
T Consensus         3 ~t~L~~A~~~g~~~~v~------------~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~   70 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELT------------GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK   70 (256)
T ss_dssp             HHHHHHHHHHTCGGGGT------------THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHH------------HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence            37999999999999755            467888999999998    899999999999998   8877776 778888


Q ss_pred             CCCCC-----------CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCC-------------CCcHHHHHHhcChHH
Q psy14140         74 DPNLK-----------DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-------------GKSPINDAAENQQME  128 (207)
Q Consensus        74 ~~~~~-----------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~-------------g~~~l~~a~~~~~~~  128 (207)
                      +++..           |..|.||||+|+..|+.+++++|++.|+++ ..+..             |.||||+|+..++.+
T Consensus        71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~  150 (256)
T 2etb_A           71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD  150 (256)
T ss_dssp             HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred             cccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            77643           367999999999999999999999999998 66665             999999999999887


Q ss_pred             ----Hhh---cCCCCCCCCCCCCcHHHHHHH--CCCHH-------HHHHHHHhCCCc-------c-CCCCCCCHHHHHHH
Q psy14140        129 ----VRD---QGVDPNLKDGDGATPLHFAAS--RGHAD-------CVRWLLRYGGKL-------V-PDKFGKSPINDAAE  184 (207)
Q Consensus       129 ----l~~---~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~-~~~~g~t~l~~a~~  184 (207)
                          |++   .|++++..|..|+||||+|+.  .++.+       ++++|+++|+++       . ++..|+||||+|+.
T Consensus       151 ~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence                567   899999999999999999998  78888       999999999888       4 78899999999999


Q ss_pred             cCCcceeehH
Q psy14140        185 NQQMEVSTVS  194 (207)
Q Consensus       185 ~~~~~~~~~l  194 (207)
                      .|+.+++++|
T Consensus       231 ~g~~~~v~~L  240 (256)
T 2etb_A          231 EGKIEIFRHI  240 (256)
T ss_dssp             TTCHHHHHHH
T ss_pred             hCCHHHHHHH
Confidence            9999985444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.5e-34  Score=216.43  Aligned_cols=199  Identities=26%  Similarity=0.293  Sum_probs=173.8

Q ss_pred             CcceeehccCChhHHHHHhhccch------------------hhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDR------------------LMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~------------------~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      ||||.||.+|+.+.++.++.....                  ....+++++|+++|++++..+..+.+|+++|+..++..
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  105 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE  105 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHH
Confidence            678889999999888877764211                  11137899999999999999999999999999999988


Q ss_pred             hHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC--------------------------------
Q psy14140         65 STK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP--------------------------------  110 (207)
Q Consensus        65 ~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~--------------------------------  110 (207)
                      +.. |++.|++++..+..|.||||+|+..++.+++++|++.|.++ ..                                
T Consensus       106 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~  185 (351)
T 3utm_A          106 VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA  185 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHH
Confidence            877 77999999999999999999999999999999999998876 33                                


Q ss_pred             ----------------------CCCCCcHHHHHHhcC---hHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140        111 ----------------------DKFGKSPINDAAENQ---QME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus       111 ----------------------~~~g~~~l~~a~~~~---~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                                            +..|.||+|+|+..+   ..+    +++.|++++..+..|.||||+|+..|+.+++++
T Consensus       186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  265 (351)
T 3utm_A          186 AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV  265 (351)
T ss_dssp             HHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                                  355778999998884   333    568999999999999999999999999999999


Q ss_pred             HHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        162 LLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       162 Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+++|+++ .++..|+||||+|+..|+.++      ++.|++.|++|
T Consensus       266 Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~------v~~Ll~~gad~  306 (351)
T 3utm_A          266 LHKHGAKMNALDSLGQTALHRAALAGHLQT------CRLLLSYGSDP  306 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHH------HHHHHHTTCCT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHH------HHHHHHcCCCC
Confidence            99999999 689999999999999999887      78888888876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.2e-34  Score=197.42  Aligned_cols=150  Identities=33%  Similarity=0.510  Sum_probs=90.1

Q ss_pred             cceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCC
Q psy14140          4 PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDG   82 (207)
Q Consensus         4 pl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g   82 (207)
                      +|+.||.+|+.++                |+.|+++|+++|..+..+.+|++.|+..++..+.. +++.|++++.+|..|
T Consensus         7 ~L~~Aa~~G~~~~----------------v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g   70 (169)
T 4gpm_A            7 RLIEAAENGNKDR----------------VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG   70 (169)
T ss_dssp             HHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHcCCHHH----------------HHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCC
Confidence            4666777777663                66677777777777777777777776666666555 557777777777777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHH
Q psy14140         83 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHAD  157 (207)
Q Consensus        83 ~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  157 (207)
                      .||||+|+..|+.+++++|++.|+++ .+|..|+||||+|+..++.+    |++.|++++..|..|+|||++|+..|+.+
T Consensus        71 ~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A           71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            77777777777777777777766655 44555555555555554444    23445555555555555555555555555


Q ss_pred             HHHHHHHhCCCc
Q psy14140        158 CVRWLLRYGGKL  169 (207)
Q Consensus       158 ~~~~Ll~~g~~~  169 (207)
                      ++++|+++|+++
T Consensus       151 iv~~Ll~~GA~i  162 (169)
T 4gpm_A          151 VVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHHCCCCc
Confidence            555555555444

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2e-33  Score=198.66  Aligned_cols=181  Identities=21%  Similarity=0.297  Sum_probs=160.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCC-CCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGT-LPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~-~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~   79 (207)
                      .||||.|+..|+.+.                ++.+++.+. +++..+..+.+|++.|+..++..+.. |++.|++++..+
T Consensus         6 ~~~L~~A~~~g~~~~----------------v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   69 (201)
T 3hra_A            6 VGALLEAANQRDTKK----------------VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN   69 (201)
T ss_dssp             TTHHHHHHHTTCHHH----------------HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccHHHHHHHhccHHH----------------HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            489999999999986                555555554 89999999999999999999988877 779999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcChHH----HhhcC-CCCCCCCCCCCcHHHHHHH
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQME----VRDQG-VDPNLKDGDGATPLHFAAS  152 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~-~~~~~~~~~g~t~l~~a~~  152 (207)
                      ..|.||||+|+..++.+++++|++. +.++ ..+..|.||||+|+..++.+    +++.+ .+++..+..|.||||.|+.
T Consensus        70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG  149 (201)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999955 4466 88999999999999999987    45677 8999999999999999999


Q ss_pred             CCC-----HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcc
Q psy14140        153 RGH-----ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQ  204 (207)
Q Consensus       153 ~~~-----~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~  204 (207)
                      .+.     .+++++|+++|+++ .++..|+|||++|+..|+.++      ++.|++.|
T Consensus       150 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~------~~~Ll~~G  201 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI------SKILAQYN  201 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH------HHHHHTCC
T ss_pred             hccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH------HHHHHhcC
Confidence            988     99999999999999 689999999999999999998      55555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-33  Score=203.69  Aligned_cols=184  Identities=23%  Similarity=0.329  Sum_probs=146.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhH------------------HHHHHHHHHcC--CCCCc-hhhcccchhhhhhhc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLML------------------SNCLSLLVQHG--TLPDY-HEEAKLHGKLHGCTC   60 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~------------------~~~v~~ll~~g--~~~~~-~~~~~~~~~~~a~~~   60 (207)
                      .||||+|+..|+.++++.+++.+.....                  .+++++|+++|  .+++. .+..+.+|++.|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            4899999999999999988876654211                  37888888888  44444 557778888888888


Q ss_pred             cCCchHH-HHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hhhc
Q psy14140         61 RKGESTK-VRDQG--VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQ  132 (207)
Q Consensus        61 ~~~~~~~-ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~  132 (207)
                      ++..+.. |++.|  ++++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.+    +++.
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  162 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  162 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            8777666 66777  778888888888888888888888888888888888 77888888888888888776    4566


Q ss_pred             C-CCCCCCCCCCCcHHHHHHHCCCHHHHHHHH-HhCCCc-cCCCCCCCHHHHHHHc
Q psy14140        133 G-VDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKL-VPDKFGKSPINDAAEN  185 (207)
Q Consensus       133 ~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g~~~-~~~~~g~t~l~~a~~~  185 (207)
                      | .+++..|..|+||||+|+..|+.+++++|+ +.|+++ .++..|+|||++|...
T Consensus       163 g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            7 788888888888888888888888888888 778888 6788888888888654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-34  Score=213.99  Aligned_cols=180  Identities=19%  Similarity=0.230  Sum_probs=161.4

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+..|+.++                +++|+++|++++..+  +.+|+++|+..++..+.. |++.|++++.+|.
T Consensus        32 ~t~L~~A~~~g~~~~----------------v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~   93 (285)
T 3kea_A           32 HSASYYAIADNNVRL----------------VCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD   93 (285)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            489999999999985                888889999888874  789999999999988877 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCC-CcHHHHHHhcChHH----HhhcCCCCCCCCC-CCCcHHHHHHHC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG-KSPINDAAENQQME----VRDQGVDPNLKDG-DGATPLHFAASR  153 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g-~~~l~~a~~~~~~~----l~~~~~~~~~~~~-~g~t~l~~a~~~  153 (207)
                      .|.||||+|+..|+.+++++|++.|+++ ..+..| .||||+|+..++.+    +++.|.+.  .+. .|.||||+|+..
T Consensus        94 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~g~t~L~~A~~~  171 (285)
T 3kea_A           94 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKN  171 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--CCCSTHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--ccccCCccHHHHHHHc
Confidence            9999999999999999999999999999 888899 79999999999987    45677665  333 889999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCH-HHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSP-INDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~-l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+.+++++|+++|+++ .++..|+|| ||+|+..++.++      ++.|++.|++|
T Consensus       172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~------v~~Ll~~gad~  221 (285)
T 3kea_A          172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEM------LQALFKYDINI  221 (285)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHH------HHHHTTSCBCS
T ss_pred             ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHH------HHHHHHcCCCC
Confidence            9999999999999999 688999998 999999999887      77788888775

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-33  Score=221.07  Aligned_cols=190  Identities=26%  Similarity=0.355  Sum_probs=153.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      .||||+||..|+.++|+.+++.+....                 ..+++++|+++|+++|..+..+.+|++.|+..++..
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   94 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   94 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            488999999999999998887654311                 137888888888888888888888888888888877


Q ss_pred             hHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCC
Q psy14140         65 STK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNL  138 (207)
Q Consensus        65 ~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~  138 (207)
                      ++. |++.|++++..+..|.||||+|+..|+.+++++|++.+.+. ..+..|.||||+|+..++.+    +++.+.+++.
T Consensus        95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  174 (437)
T 1n11_A           95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  174 (437)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            776 66888888888888888888888888888888888888777 77778888888888888776    4567888888


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCccee
Q psy14140        139 KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVS  191 (207)
Q Consensus       139 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~  191 (207)
                      .+..|.|||+.|+..++.+++++|+++|.++ ..+..|.||||+|+..|+.+++
T Consensus       175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  228 (437)
T 1n11_A          175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA  228 (437)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            8888888888888888888888888888777 5667777888888887777763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-33  Score=207.23  Aligned_cols=198  Identities=27%  Similarity=0.307  Sum_probs=177.5

Q ss_pred             CcceeehccCChhHHHHHhhccchhh------------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCc
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM------------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGE   64 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~------------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~   64 (207)
                      ||||.|+.+|+.++++.+++.+....                  ..+++++|+++|++++..+..+.+|++.|+..++..
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   86 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK   86 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            79999999999999999998765421                  148999999999999999999999999999999988


Q ss_pred             hHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC----------CCCCCcHHHHHHhcChHHH---
Q psy14140         65 STK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP----------DKFGKSPINDAAENQQMEV---  129 (207)
Q Consensus        65 ~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~----------~~~g~~~l~~a~~~~~~~l---  129 (207)
                      +.. |++.|++++..+..|.||||+|+..++.+++++|++.|.++ ..          +..|.||||+|+..++.++   
T Consensus        87 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  166 (285)
T 1wdy_A           87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHH
Confidence            877 77999999999999999999999999999999999999988 44          7789999999999999873   


Q ss_pred             -hhc-CCCCCCCCCCCCcHHHHHHHCCC----HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhh
Q psy14140        130 -RDQ-GVDPNLKDGDGATPLHFAASRGH----ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLT  202 (207)
Q Consensus       130 -~~~-~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~  202 (207)
                       ++. +.+++..+..|.||||.|+..++    .+++++|+++|+++ .++..|+||||+|+..|+.++      ++.|++
T Consensus       167 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~  240 (285)
T 1wdy_A          167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL------VQRLLE  240 (285)
T ss_dssp             HHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH------HHHHHH
T ss_pred             HHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH------HHHHHh
Confidence             444 99999999999999999999999    99999999999999 688999999999999999887      566666


Q ss_pred             -cccC
Q psy14140        203 -IQKV  206 (207)
Q Consensus       203 -~~~~  206 (207)
                       .|++
T Consensus       241 ~~g~~  245 (285)
T 1wdy_A          241 QEHIE  245 (285)
T ss_dssp             SSSCC
T ss_pred             ccCCC
Confidence             5544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.2e-33  Score=191.85  Aligned_cols=149  Identities=36%  Similarity=0.569  Sum_probs=136.9

Q ss_pred             chhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH-
Q psy14140         52 HGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME-  128 (207)
Q Consensus        52 ~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~-  128 (207)
                      ..++.|+..|+.+++. |++.|+++|.+|..|.||||+|+..++.+++++|++.|+++ .++..|.||||+|+..++.+ 
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            3688899999988776 88999999999999999999999999999999999999999 99999999999999999887 


Q ss_pred             ---HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcc
Q psy14140        129 ---VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQ  204 (207)
Q Consensus       129 ---l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~  204 (207)
                         |++.|++++..|..|+||||+|+..|+.+++++|+++|+++ .++..|+|||++|+..|+.++      ++.|++.|
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i------v~~Ll~~G  159 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEV------VKLLEKQG  159 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHTC-
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH------HHHHHHCC
Confidence               56899999999999999999999999999999999999999 689999999999999999988      67777777


Q ss_pred             cC
Q psy14140        205 KV  206 (207)
Q Consensus       205 ~~  206 (207)
                      ++
T Consensus       160 A~  161 (169)
T 4gpm_A          160 GW  161 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.6e-34  Score=219.83  Aligned_cols=190  Identities=16%  Similarity=0.194  Sum_probs=167.5

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCch
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGES   65 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~   65 (207)
                      ||||+||..|+.++|+.+++.+....                 ..+++++|+++|++++.  ..+.+|++.|+..++..+
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHH
Confidence            79999999999999999998765422                 14899999999996654  567889999999998887


Q ss_pred             HH-HHhc----CCCCCC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCc-CCCCCCCcHHHH
Q psy14140         66 TK-VRDQ----GVDPNL-----------------KDGDGATPLHFAASRG--HADCVRWLLRYGGKL-VPDKFGKSPIND  120 (207)
Q Consensus        66 ~~-ll~~----g~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~-~~~~~g~~~l~~  120 (207)
                      +. |++.    |.+++.                 .+..|.||||+|+..|  +.+++++|++.|+++ ..+..|.||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            77 6666    777776                 8889999999999999  999999999999999 899999999999


Q ss_pred             HHhcChHH----HhhcCCC-----CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        121 AAENQQME----VRDQGVD-----PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       121 a~~~~~~~----l~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      |+..++.+    |++.|.+     ++..+..|.||||+|+..|+.+++++|+++|+++ ..+..|+||||+|+..|+.++
T Consensus       180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~  259 (364)
T 3ljn_A          180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLL  259 (364)
T ss_dssp             HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHH
T ss_pred             HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Confidence            99999987    5567777     9999999999999999999999999999999999 689999999999999999998


Q ss_pred             eehH
Q psy14140        191 STVS  194 (207)
Q Consensus       191 ~~~l  194 (207)
                      +++|
T Consensus       260 v~~L  263 (364)
T 3ljn_A          260 TKEL  263 (364)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-33  Score=211.15  Aligned_cols=183  Identities=26%  Similarity=0.358  Sum_probs=147.3

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||.|+.+|+.++                +++|+++|+++|..+..+.+|++.|+..++..+.. |++.|++++..|..
T Consensus        42 t~l~~A~~~g~~~~----------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  105 (299)
T 1s70_B           42 AVFLAACSSGDTEE----------------VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE  105 (299)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cHHHHHHHcCCHHH----------------HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            68999999999985                77888888888888888899999988888877766 67889999999989


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHhh-----cCCC--------------------
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRD-----QGVD--------------------  135 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~~-----~~~~--------------------  135 (207)
                      |.||||+|+..|+.+++++|++.|+++ ..+..|.||+|+|+..+..+++.     .+.+                    
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL  185 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHH
Confidence            999999999999999999999998888 78888888888887776655321     2222                    


Q ss_pred             ------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        136 ------PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       136 ------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                            ....+..|.||||+|+..|+.+++++|+++|+++ .++..|.||||+|+..|+.++      ++.|++.|++|
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~------v~~Ll~~gad~  258 (299)
T 1s70_B          186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA------CRILVENLCDM  258 (299)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH------HHHHHHTTCCT
T ss_pred             hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHH------HHHHHHcCCCC
Confidence                  2234567888888888888888888888888888 577888888888888888776      66667777664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-34  Score=207.85  Aligned_cols=171  Identities=22%  Similarity=0.277  Sum_probs=154.9

Q ss_pred             HHHHHHH----HcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy14140         31 NCLSLLV----QHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  105 (207)
Q Consensus        31 ~~v~~ll----~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  105 (207)
                      +++++|+    +.|.+++..+..+.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..++.+++++|++.+
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~  102 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA  102 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3455555    489999999999999999999999988877 77999999999999999999999999999999999998


Q ss_pred             C----Cc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-CCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCC
Q psy14140        106 G----KL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF  174 (207)
Q Consensus       106 ~----~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~  174 (207)
                      .    ++ ..+..|.||||+|+..++.+    +++.|.+++..+ ..|.||||+|+..|+.+++++|+++|+++ .++..
T Consensus       103 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (241)
T 1k1a_A          103 APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS  182 (241)
T ss_dssp             CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT
T ss_pred             CCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            7    55 78899999999999999877    567999999988 78999999999999999999999999999 68899


Q ss_pred             CCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        175 GKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       175 g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+||||+|+..|+.++      ++.|++.|++|
T Consensus       183 g~t~L~~A~~~~~~~~------v~~Ll~~ga~~  209 (241)
T 1k1a_A          183 GSSALHSASGRGLLPL------VRTLVRSGADS  209 (241)
T ss_dssp             SCBHHHHHHHHTCHHH------HHHHHHTTCCT
T ss_pred             CCCHHHHHHHcCCHHH------HHHHHhcCCCC
Confidence            9999999999999887      77777787765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3e-33  Score=212.68  Aligned_cols=191  Identities=23%  Similarity=0.282  Sum_probs=133.5

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCch
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGES   65 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~   65 (207)
                      ||||+|+.+|+.++|+.|++.+....                 ...++..+++.+++++..+..+.+|++.|+..++..+
T Consensus        61 TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~  140 (337)
T 4g8k_A           61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA  140 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHH
Confidence            66666666666666666666554311                 0234555555555666667777778888777777666


Q ss_pred             HH-HHhcCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcChH----H
Q psy14140         66 TK-VRDQGVDPNLK----------DGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQM----E  128 (207)
Q Consensus        66 ~~-ll~~g~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~~----~  128 (207)
                      .. +++.|++++..          +..|.||||+|+..|+.+++++|++. |+++ ..+..|.++++.++..+..    .
T Consensus       141 ~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~  220 (337)
T 4g8k_A          141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA  220 (337)
T ss_dssp             HHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred             HHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence            65 66777777653          33577888888888888888888854 6777 7777888888776543321    1


Q ss_pred             ----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCc-cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        129 ----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       129 ----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~-~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                          |++.|++++..+..|.||||+|+..|+.+++++|++. |+++ .++..|+||||+|+..|+.+++++
T Consensus       221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~  291 (337)
T 4g8k_A          221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  291 (337)
T ss_dssp             HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                4577888888888888888888888888888888764 6777 577788888888888888777443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=201.26  Aligned_cols=193  Identities=20%  Similarity=0.263  Sum_probs=172.1

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhh-cccchhhhhhhccCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEE-AKLHGKLHGCTCRKG   63 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~-~~~~~~~~a~~~~~~   63 (207)
                      .||||.|+..|+.++++.+++.+....                 ..+++++|+++|.+++.... .+.+|++.|+..++.
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            489999999999999999998765521                 13899999999999876554 488999999999988


Q ss_pred             chHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcCh-HH----HhhcCCCC
Q psy14140         64 ESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ-ME----VRDQGVDP  136 (207)
Q Consensus        64 ~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~-~~----l~~~~~~~  136 (207)
                      .+.. |++.|++++..+..|.||||+|+..++.+++++|++.|.++ ..+..|.||+|+|+..+. .+    +++.+.++
T Consensus        90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence            8776 77999999999999999999999999999999999999999 899999999999996665 22    67899999


Q ss_pred             CCCCC-CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        137 NLKDG-DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       137 ~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      +..+. .|.||||.|+..|+.+++++|+++|+++ .++..|+|||++|++.++.+++++|
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL  229 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99887 8999999999999999999999999999 6899999999999999999985444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.4e-34  Score=211.34  Aligned_cols=188  Identities=20%  Similarity=0.233  Sum_probs=158.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCC----chhhcccchhhhhhhc---cCCchHH-HHhcCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPD----YHEEAKLHGKLHGCTC---RKGESTK-VRDQGV   73 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~----~~~~~~~~~~~~a~~~---~~~~~~~-ll~~g~   73 (207)
                      .||||+|+..|+.++|+.++            +.+.+.+.+++    ..+..+.+|+++|+..   ++..++. |++.|+
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll------------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLL------------PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHH------------HHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHH------------HHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            37999999999999866544            44445777775    4578899999999976   7777666 677765


Q ss_pred             CC-----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCC--------------CCCcHHHHHHhcChH
Q psy14140         74 DP-----------NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK--------------FGKSPINDAAENQQM  127 (207)
Q Consensus        74 ~~-----------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~--------------~g~~~l~~a~~~~~~  127 (207)
                      ++           ...|..|.||||+|+..|+.+++++|++.|+++ ..+.              .|.||||+|+..++.
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            42           235678999999999999999999999999999 6665              799999999999988


Q ss_pred             H----Hhh---cCCCCCCCCCCCCcHHHHHHHCCC---------HHHHHHHHHhCCCcc--------CCCCCCCHHHHHH
Q psy14140        128 E----VRD---QGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYGGKLV--------PDKFGKSPINDAA  183 (207)
Q Consensus       128 ~----l~~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~--------~~~~g~t~l~~a~  183 (207)
                      +    |++   .|++++..|..|+||||+|+..++         .+++++|+++|+++.        ++..|+||||+|+
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence            7    567   899999999999999999999888         799999999998883        7899999999999


Q ss_pred             HcCCcceeehHHHHHHHhhccc-CC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQK-VP  207 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~-~p  207 (207)
                      ..|+.++      ++.|++.|+ +|
T Consensus       242 ~~g~~~i------v~~Ll~~ga~dp  260 (273)
T 2pnn_A          242 SSGKIGV------LAYILQREIHEP  260 (273)
T ss_dssp             HTTCHHH------HHHHHHHHTC--
T ss_pred             HhChHHH------HHHHHHCCCCCc
Confidence            9999988      788888888 55

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-33  Score=215.42  Aligned_cols=198  Identities=19%  Similarity=0.237  Sum_probs=156.8

Q ss_pred             CCcceeehccCChhHHHHHhh--------ccchh-----------------hHHHHHHHHHHcCCCCCchhhcccchhhh
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGS--------MGDRL-----------------MLSNCLSLLVQHGTLPDYHEEAKLHGKLH   56 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~--------~~~~~-----------------~~~~~v~~ll~~g~~~~~~~~~~~~~~~~   56 (207)
                      .||||+||.+|+.++++.++.        .+...                 ...+++++|+++|++++..+..+.+|++.
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  205 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ  205 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHH
Confidence            489999999999999888763        22221                 11378888888888888888888888888


Q ss_pred             hhhccCCchHH-HHhcC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHhCCCc-C--------CCCCCCcHHHH
Q psy14140         57 GCTCRKGESTK-VRDQG---VDPNLKDGDGATPLHFAASRG---HADCVRWLLRYGGKL-V--------PDKFGKSPIND  120 (207)
Q Consensus        57 a~~~~~~~~~~-ll~~g---~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~-~--------~~~~g~~~l~~  120 (207)
                      |+..++..++. |++.+   ++++..|..|.||||+|+..+   +.+++++|++.|.++ .        .+..|.||||+
T Consensus       206 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~  285 (373)
T 2fo1_E          206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY  285 (373)
T ss_dssp             HHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHH
T ss_pred             HHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHH
Confidence            88888777766 55666   788888888888888888877   788888888888877 3        45678888888


Q ss_pred             HHhcChHH----Hhhc-CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        121 AAENQQME----VRDQ-GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       121 a~~~~~~~----l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      |+..++.+    |++. +++++..|..|.||||+|+..|+.+++++|+++|+++ .++..|+|||++|+.+|+.++    
T Consensus       286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~i----  361 (373)
T 2fo1_E          286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI----  361 (373)
T ss_dssp             HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH----
T ss_pred             HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHH----
Confidence            88888877    3444 4888888888999999999889999999999888888 688888899999999888887    


Q ss_pred             HHHHHHhhccc
Q psy14140        195 PVVRRLLTIQK  205 (207)
Q Consensus       195 ~~~~~ll~~~~  205 (207)
                        ++.|++.++
T Consensus       362 --v~~Ll~~~a  370 (373)
T 2fo1_E          362 --VDIFDRCRP  370 (373)
T ss_dssp             --HHHHHTTC-
T ss_pred             --HHHHHhcCc
Confidence              555555544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.7e-33  Score=200.16  Aligned_cols=172  Identities=28%  Similarity=0.366  Sum_probs=159.1

Q ss_pred             HHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC-CC
Q psy14140         30 SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-GK  107 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~  107 (207)
                      .+++++|+++|++++..+..+.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..++.+++++|++.+ .+
T Consensus        24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  103 (237)
T 3b7b_A           24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD  103 (237)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            37899999999999999999999999999999888776 77999999999999999999999999999999999998 56


Q ss_pred             c-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH
Q psy14140        108 L-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       108 ~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      + ..+..|.||+|+|+..++.+    +++.|.+++..+..|.||||.|+..|+.+++++|++.|+++ ..+..|.||||+
T Consensus       104 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI  183 (237)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            6 88899999999999999887    56799999999999999999999999999999999999999 688999999999


Q ss_pred             HHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        182 AAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       182 a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+..++.++      ++.|++.|++|
T Consensus       184 A~~~~~~~~------v~~Ll~~gad~  203 (237)
T 3b7b_A          184 AARENRYDC------VVLFLSRDSDV  203 (237)
T ss_dssp             HHHTTCHHH------HHHHHTTTCCT
T ss_pred             HHHhCCHhH------HHHHHHcCCCC
Confidence            999999887      67778877764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=202.70  Aligned_cols=183  Identities=26%  Similarity=0.367  Sum_probs=140.5

Q ss_pred             hHHHHHhhccchhhHHHHHHHHHHcCCC--------CCchhhcccchhhhhhhccCCc--hHHHHhcCCCCCCCCCCCCC
Q psy14140         15 KCSSQAGSMGDRLMLSNCLSLLVQHGTL--------PDYHEEAKLHGKLHGCTCRKGE--STKVRDQGVDPNLKDGDGAT   84 (207)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~v~~ll~~g~~--------~~~~~~~~~~~~~~a~~~~~~~--~~~ll~~g~~~~~~~~~g~t   84 (207)
                      +.+..++..++.    ++|++|++.|.+        ++..+..+.+|++.++.++...  +..|++.|+++|.+|..|.|
T Consensus        13 ~~L~~A~~~G~~----~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~T   88 (269)
T 4b93_B           13 EKLLRAVADGDL----EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSS   88 (269)
T ss_dssp             HHHHHHHHTTCH----HHHHHHHTCC----------------------------------------CCCCTTCCCTTSCC
T ss_pred             hHHHHHHHcCCH----HHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCC
Confidence            334556666666    799999999975        4556677888999888777643  34488999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy14140         85 PLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCV  159 (207)
Q Consensus        85 ~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  159 (207)
                      |||+|+..|+.+++++|++.++++ ..+..|.||+++|+..++.+    +++.|++++..|..|.||||+|+..|+.+++
T Consensus        89 pLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999999999999 89999999999999999877    5689999999999999999999999999999


Q ss_pred             HHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        160 RWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       160 ~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ++|+++|+++ ..+..|.||||+|+..|+.++      ++.|++.|++|
T Consensus       169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~------v~~Ll~~Gad~  211 (269)
T 4b93_B          169 ALLLQHGASINASNNKGNTALHEAVIEKHVFV------VELLLLHGASV  211 (269)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH------HHHHHHTTCCS
T ss_pred             HHHHHCCCCCCccccCCCcHHHHHHHcCCHHH------HHHHHHCCCCC
Confidence            9999999999 689999999999999999987      77788888875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=212.31  Aligned_cols=172  Identities=21%  Similarity=0.272  Sum_probs=154.2

Q ss_pred             HHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC---
Q psy14140         30 SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG---  105 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~---  105 (207)
                      ...++.|+++|+++|..+..+.+|++.|+..++..++. |++.|++++..+..|.||||+|+..|+.+++++|++.+   
T Consensus       146 ~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          146 VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             HHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence            45678899999999999999999999999999988877 77999999999999999999999999999999999987   


Q ss_pred             CCc-CCCCCCCcHHHHHHhcC---hHH----HhhcCCCCCC--------CCCCCCcHHHHHHHCCCHHHHHHHHHhC-CC
Q psy14140        106 GKL-VPDKFGKSPINDAAENQ---QME----VRDQGVDPNL--------KDGDGATPLHFAASRGHADCVRWLLRYG-GK  168 (207)
Q Consensus       106 ~~~-~~~~~g~~~l~~a~~~~---~~~----l~~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~  168 (207)
                      .++ ..+..|.||||+|+..+   ..+    +++.|++++.        .+..|.||||+|+..|+.+++++|++++ ++
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence            566 88999999999999887   555    5678888876        5678999999999999999999999886 88


Q ss_pred             c-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        169 L-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       169 ~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      + ..+..|+||||+|+..|+.++      ++.|++.|+++
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~~i------v~~Ll~~gad~  339 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRIEV------VMYLIQQGASV  339 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHH------HHHHHHTTCCS
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHH------HHHHHHcCCCc
Confidence            8 689999999999999999888      67777777764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.8e-32  Score=203.07  Aligned_cols=172  Identities=24%  Similarity=0.286  Sum_probs=141.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCC------
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVD------   74 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~------   74 (207)
                      .||||+|+..|+.++                +++|+++|++++..+..+.+|+++|+..++..+.. |++.|++      
T Consensus        46 ~t~L~~A~~~g~~~~----------------v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  109 (282)
T 1oy3_D           46 QTALHLAAILGEAST----------------VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS  109 (282)
T ss_dssp             CCHHHHHHHHTCHHH----------------HHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhH
Confidence            589999999999875                88999999999999999999999999998888776 5566654      


Q ss_pred             -----------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC-
Q psy14140         75 -----------------------------------------PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD-  111 (207)
Q Consensus        75 -----------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~-  111 (207)
                                                               ++..+..|.||||+|+..|+.+++++|++.|+++ ..+ 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  189 (282)
T 1oy3_D          110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP  189 (282)
T ss_dssp             ----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             HHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence                                                     7788899999999999999999999999999999 655 


Q ss_pred             CCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        112 KFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       112 ~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      ..|.||||+|+..++.+    |++.|++++..+..|.||||+|+..++.+++++|+++|+++ .++..|.|||++|....
T Consensus       190 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            45999999999999887    56899999999999999999999999999999999999999 69999999999998876


Q ss_pred             Ccc
Q psy14140        187 QME  189 (207)
Q Consensus       187 ~~~  189 (207)
                      ..+
T Consensus       270 ~~~  272 (282)
T 1oy3_D          270 DSD  272 (282)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=3.4e-33  Score=205.07  Aligned_cols=186  Identities=21%  Similarity=0.214  Sum_probs=158.8

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchh----hcccchhhhhh---hccCCchHH-HHhcCC-
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHE----EAKLHGKLHGC---TCRKGESTK-VRDQGV-   73 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~----~~~~~~~~~a~---~~~~~~~~~-ll~~g~-   73 (207)
                      ||||.|+..|+.+.++            .++++++++|++++..+    ..+.+|++.|+   ..++..++. |++.|+ 
T Consensus         7 ~~L~~A~~~g~~~~v~------------~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~   74 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLE------------GLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK   74 (260)
T ss_dssp             HHHHHHHHHTCGGGGT------------THHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHH------------HHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence            6899999999999865            35667888999999777    56999999887   557777766 667663 


Q ss_pred             ----------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC--------------CCCCcHHHHHHhcChHH
Q psy14140         74 ----------DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD--------------KFGKSPINDAAENQQME  128 (207)
Q Consensus        74 ----------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~--------------~~g~~~l~~a~~~~~~~  128 (207)
                                +++..|..|.||||+|+..|+.+++++|++.|+++ ..+              ..|.||||+|+..++.+
T Consensus        75 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  154 (260)
T 3jxi_A           75 TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH  154 (260)
T ss_dssp             TTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred             ccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence                      34555668999999999999999999999999999 666              68999999999999887


Q ss_pred             ----Hhh---cCCCCCCCCCCCCcHHHHHHHCCC---------HHHHHHHHHhCCCc--------cCCCCCCCHHHHHHH
Q psy14140        129 ----VRD---QGVDPNLKDGDGATPLHFAASRGH---------ADCVRWLLRYGGKL--------VPDKFGKSPINDAAE  184 (207)
Q Consensus       129 ----l~~---~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~--------~~~~~g~t~l~~a~~  184 (207)
                          |++   .|++++..|..|+||||+|+..++         .+++++|+++|+++        .++..|+||||+|+.
T Consensus       155 ~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHH
Confidence                567   899999999999999999998877         79999999999887        378899999999999


Q ss_pred             cCCcceeehHHHHHHHhhcccC
Q psy14140        185 NQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       185 ~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      .|+.++      ++.||+.|.+
T Consensus       235 ~g~~~~------v~~Ll~~g~~  250 (260)
T 3jxi_A          235 TGKIGI------FQHIIRREIA  250 (260)
T ss_dssp             TTCHHH------HHHHHHHHHH
T ss_pred             cCCHHH------HHHHHHhCCC
Confidence            999998      5666665543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=5.9e-32  Score=201.20  Aligned_cols=176  Identities=24%  Similarity=0.413  Sum_probs=158.1

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+..|+.++                +++|+++|++++..+..+.+|++.|+..++..+.. |++.|++++..+ 
T Consensus        93 ~t~L~~A~~~g~~~~----------------v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-  155 (285)
T 3d9h_A           93 VSPLHEACLGGHLSC----------------VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-  155 (285)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-
T ss_pred             CCHHHHHHHCCcHHH----------------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-
Confidence            489999999999874                88999999999999999999999999999988877 779999998654 


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.||||+|+..|+.+++++|++.|.++ ..+..|.||||+|+..++.+    +++.|++++. +..|.||||+|+..++
T Consensus       156 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~  234 (285)
T 3d9h_A          156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTAS  234 (285)
T ss_dssp             TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCC
Confidence            5999999999999999999999999999 89999999999999999887    5678999985 8899999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhc
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTI  203 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~  203 (207)
                      .+++++|+++|+++ .+|..|+|||++|+.  +.++      ++.|++.
T Consensus       235 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~------~~~Ll~~  275 (285)
T 3d9h_A          235 EELACLLMDFGADTQAKNAEGKRPVELVPP--ESPL------AQLFLER  275 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHH------HHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHH------HHHHHHh
Confidence            99999999999999 699999999999994  4455      5555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=4.3e-32  Score=195.37  Aligned_cols=172  Identities=21%  Similarity=0.186  Sum_probs=153.4

Q ss_pred             HHHHHHHHHcCCCCCc-hhhcccchhhhhhhccCCchHH-HHhcC--CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy14140         30 SNCLSLLVQHGTLPDY-HEEAKLHGKLHGCTCRKGESTK-VRDQG--VDPNL-KDGDGATPLHFAASRGHADCVRWLLRY  104 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~-ll~~g--~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~  104 (207)
                      .++++.|+++|.+++. .+..+.+|+++|+..++..+.. |++.|  ++++. .+..|.||||+|+..++.+++++|++.
T Consensus        15 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           15 FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            3789999999987754 7889999999999999988877 77999  55555 788999999999999999999999999


Q ss_pred             C--CCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC-CCc-cCCCCC
Q psy14140        105 G--GKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG-GKL-VPDKFG  175 (207)
Q Consensus       105 ~--~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~-~~~~~g  175 (207)
                      |  .++ ..+..|.||||+|+..++.+    +++.|++++..+..|.||||+|+..|+.+++++|++.| +++ .++..|
T Consensus        95 g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g  174 (228)
T 2dzn_A           95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG  174 (228)
T ss_dssp             SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTS
T ss_pred             CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCC
Confidence            8  666 88899999999999999887    56799999999999999999999999999999999999 888 689999


Q ss_pred             CCHHHHHHHcCCcceeehHHHHHHHh-hcccCC
Q psy14140        176 KSPINDAAENQQMEVSTVSPVVRRLL-TIQKVP  207 (207)
Q Consensus       176 ~t~l~~a~~~~~~~~~~~l~~~~~ll-~~~~~p  207 (207)
                      +||||+|+..++.++      ++.|+ +.|++|
T Consensus       175 ~t~L~~A~~~~~~~~------v~~Ll~~~ga~~  201 (228)
T 2dzn_A          175 WTPLFHALAEGHGDA------AVLLVEKYGAEY  201 (228)
T ss_dssp             CCHHHHHHHTTCHHH------HHHHHHHHCCCS
T ss_pred             CCHHHHHHHcCCHHH------HHHHHHhcCCCC
Confidence            999999999999988      66677 667664

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=1.9e-31  Score=195.16  Aligned_cols=173  Identities=22%  Similarity=0.265  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHcCCCCCch-hhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy14140         29 LSNCLSLLVQHGTLPDYH-EEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG  106 (207)
Q Consensus        29 ~~~~v~~ll~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  106 (207)
                      ..+++++|+++|++++.. +..+.+|+++|+..++..++. |++.|++++..|..|.||||+|+..++.+++++|++.+.
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            357999999999999654 789999999999999988776 789999999999999999999999999999999999987


Q ss_pred             -Cc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHH
Q psy14140        107 -KL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI  179 (207)
Q Consensus       107 -~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l  179 (207)
                       ++ ..+..|.||||+|+..++.+    +++.|++++..+..|.||||+|+..|+.+++++|+++|+++ .++..|+|||
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL  194 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL  194 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence             55 88999999999999998765    66899999999999999999999999999999999999999 6889999999


Q ss_pred             HHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        180 NDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       180 ~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+|+..|+.++      ++.|++.|++|
T Consensus       195 ~~A~~~~~~~~------v~~Ll~~ga~~  216 (253)
T 1yyh_A          195 FLAAREGSYET------AKVLLDHFANR  216 (253)
T ss_dssp             HHHHHHTCHHH------HHHHHHTTCCT
T ss_pred             HHHHHCCCHHH------HHHHHHcCCCc
Confidence            99999999987      67777877764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.2e-31  Score=190.21  Aligned_cols=171  Identities=22%  Similarity=0.270  Sum_probs=155.4

Q ss_pred             HHHHHHHHcCCCCCch-hhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCC-C
Q psy14140         31 NCLSLLVQHGTLPDYH-EEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-K  107 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-~  107 (207)
                      +++++|+++|++++.. +..+.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..++.+++++|++.+. +
T Consensus         5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   84 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD   84 (223)
T ss_dssp             CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred             HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3577888899988765 789999999999999988776 779999999999999999999999999999999999987 5


Q ss_pred             c-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH
Q psy14140        108 L-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       108 ~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      + ..+..|.||||+|+..++.+    +++.+++++..+..|.||||+|+..++.+++++|+++|+++ .++..|.||||+
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            5 88899999999999999887    56799999999999999999999999999999999999999 688999999999


Q ss_pred             HHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        182 AAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       182 a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+..++.++      ++.|++.|++|
T Consensus       165 A~~~~~~~~------v~~Ll~~ga~~  184 (223)
T 2f8y_A          165 AAREGSYET------AKVLLDHFANR  184 (223)
T ss_dssp             HHHHTCHHH------HHHHHHTTCCT
T ss_pred             HHHcCCHHH------HHHHHHcCCCC
Confidence            999999987      67777777764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.9e-32  Score=210.24  Aligned_cols=190  Identities=19%  Similarity=0.195  Sum_probs=168.4

Q ss_pred             CCcceeehccCChhHHHHHhhccchhh---------------HHHHHHHHHHc----CCCCCc-----------------
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLM---------------LSNCLSLLVQH----GTLPDY-----------------   45 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~---------------~~~~v~~ll~~----g~~~~~-----------------   45 (207)
                      .||||+|+.+|+.++++.|++.+....               ..+++++|+++    |++++.                 
T Consensus        54 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (364)
T 3ljn_A           54 CTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV  133 (364)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEE
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcccc
Confidence            489999999999999999999776422               14899999999    888877                 


Q ss_pred             hhhcccchhhhhhhcc--CCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-----c-CCCCCCCc
Q psy14140         46 HEEAKLHGKLHGCTCR--KGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK-----L-VPDKFGKS  116 (207)
Q Consensus        46 ~~~~~~~~~~~a~~~~--~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~-~~~~~g~~  116 (207)
                      .+..+.+|+++|+..+  +..++. |++.|++++..|..|.||||+|+..|+.+++++|++.|++     + ..+..|.|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            8888999999999999  666665 7799999999999999999999999999999999999988     7 88999999


Q ss_pred             HHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-------------cCCCCCCCHH
Q psy14140        117 PINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-------------VPDKFGKSPI  179 (207)
Q Consensus       117 ~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-------------~~~~~g~t~l  179 (207)
                      |||+|+..++.+    |++.|++++..|..|.|||++|+..|+.+++++|+++|+++             ..+..++||+
T Consensus       214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  293 (364)
T 3ljn_A          214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF  293 (364)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccc
Confidence            999999999987    56899999999999999999999999999999999998654             1456688999


Q ss_pred             HHHHHcCCccee
Q psy14140        180 NDAAENQQMEVS  191 (207)
Q Consensus       180 ~~a~~~~~~~~~  191 (207)
                      ++|+..++.+.+
T Consensus       294 ~~aa~~~~~~~v  305 (364)
T 3ljn_A          294 VPAAADPSKQEV  305 (364)
T ss_dssp             SCSSCCHHHHHH
T ss_pred             hhhhhccCHHHH
Confidence            999988866653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=7.6e-31  Score=199.81  Aligned_cols=171  Identities=25%  Similarity=0.305  Sum_probs=150.5

Q ss_pred             HHHHHHHH-cCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         31 NCLSLLVQ-HGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        31 ~~v~~ll~-~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      +.++.++. .+.+++..+..+.+|+++|+..++..++. |++.|++++..|..|.||||+|+..|+.+++++|++.|.++
T Consensus        38 ~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~  117 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV  117 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            55655554 58999999999999999999999988877 77999999999999999999999999999999999999999


Q ss_pred             -CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-------------------------------------------
Q psy14140        109 -VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-------------------------------------------  140 (207)
Q Consensus       109 -~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-------------------------------------------  140 (207)
                       ..+..|.||||+|+..++.+    +++.|++++..+                                           
T Consensus       118 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (351)
T 3utm_A          118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT  197 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHH
Confidence             89999999999999999887    557788876544                                           


Q ss_pred             -----------CCCCcHHHHHHHC---CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhccc
Q psy14140        141 -----------GDGATPLHFAASR---GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQK  205 (207)
Q Consensus       141 -----------~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~  205 (207)
                                 ..|.||||.|+..   +..+++++|++.|+++ .++..|+||||+|+..|+.++      ++.|++.|+
T Consensus       198 l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~------v~~Ll~~ga  271 (351)
T 3utm_A          198 LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV------MEVLHKHGA  271 (351)
T ss_dssp             TTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH------HHHHHHTTC
T ss_pred             HHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHH------HHHHHHCCC
Confidence                       4577999999998   5589999999999999 688999999999999999987      667777776


Q ss_pred             CC
Q psy14140        206 VP  207 (207)
Q Consensus       206 ~p  207 (207)
                      ++
T Consensus       272 ~~  273 (351)
T 3utm_A          272 KM  273 (351)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=2.9e-30  Score=186.19  Aligned_cols=181  Identities=27%  Similarity=0.369  Sum_probs=161.3

Q ss_pred             HHHHhhccchhhHHHHHHHHHHcCC-CCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCC
Q psy14140         17 SSQAGSMGDRLMLSNCLSLLVQHGT-LPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGH   94 (207)
Q Consensus        17 ~~~~~~~~~~~~~~~~v~~ll~~g~-~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~   94 (207)
                      +..+...+..    ++++.+++.+. ..+..+..+.+|++.|+..++..+.. |++.|++++..|..|.||||+|+..++
T Consensus        10 l~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A           10 ICNLAYSGKL----DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             HHHHHHHTCH----HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHhCCH----HHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            4455555555    67888887764 46777889999999999999988776 779999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140         95 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus        95 ~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      .+++++|++.|.++ .++..|.||||+|+..++.+    +++.|.+++..+..|.||||.|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            99999999999999 88999999999999999887    56799999999999999999999999999999999999999


Q ss_pred             -cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        170 -VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       170 -~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                       .++..|+||||+|+..++.++      ++.|++.|++|
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~~ga~~  198 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEE------AKFLVTQGASI  198 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHH------HHHHHHTTCCS
T ss_pred             cccCCCCCCHHHHHHHCCCHHH------HHHHHHCCCCC
Confidence             688999999999999999887      67777777765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=4.2e-30  Score=180.54  Aligned_cols=155  Identities=22%  Similarity=0.256  Sum_probs=143.5

Q ss_pred             CCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHH
Q psy14140         43 PDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  120 (207)
Q Consensus        43 ~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~  120 (207)
                      +|..+..+.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            4677888999999999999988776 78999999999999999999999999999999999999999 899999999999


Q ss_pred             HHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHH
Q psy14140        121 AAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSP  195 (207)
Q Consensus       121 a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~  195 (207)
                      |+..++.+    +++.|++++..+..|.||||+|+..|+.+++++|+++|+++ .++..|.|||++|+..|+.+++++|.
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999887    56799999999999999999999999999999999999999 68999999999999999999966654


Q ss_pred             HH
Q psy14140        196 VV  197 (207)
Q Consensus       196 ~~  197 (207)
                      ..
T Consensus       188 ~~  189 (192)
T 2rfm_A          188 EV  189 (192)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-31  Score=201.33  Aligned_cols=165  Identities=22%  Similarity=0.225  Sum_probs=125.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccC----CchHHHHhcC-CCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRK----GESTKVRDQG-VDPN   76 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~----~~~~~ll~~g-~~~~   76 (207)
                      .||||+|+..|+.+                +|++|+++|++++..+..+.+|+++|+..++    ..+..+++.+ .+++
T Consensus       132 ~TpLh~Aa~~g~~~----------------~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          132 NTPLHWLTSIANLE----------------LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             CCHHHHHHHTTCHH----------------HHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             CcHHHHHHHcCCHH----------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            47888888888776                4788888888888888888888888888776    4444566655 6788


Q ss_pred             CCCCCCCCHHHHHHH----cCCHHHHHHHHHh--------------------CCCc-CCCCCCCcHHHHHHhcChHHHhh
Q psy14140         77 LKDGDGATPLHFAAS----RGHADCVRWLLRY--------------------GGKL-VPDKFGKSPINDAAENQQMEVRD  131 (207)
Q Consensus        77 ~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~-~~~~~g~~~l~~a~~~~~~~l~~  131 (207)
                      .+|..|.||||+|+.    .++.+++++|++.                    +.++ .++..|.||||.|+.  -..+++
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~--~~~Ll~  273 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--LKWIIA  273 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS--HHHHHH
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH--HHHHHH
Confidence            888888888888888    7888888888877                    6666 778888888888875  223455


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        132 QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       132 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      .  +++..|..|+||||+|+..|+.+++++|+++|+++ .++..|+||||+|+++|
T Consensus       274 ~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          274 N--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             H--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             h--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            5  58888999999999999999999999999999999 68999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.7e-31  Score=195.99  Aligned_cols=179  Identities=17%  Similarity=0.205  Sum_probs=156.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCC-CCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGV-DPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~-~~~~~~   79 (207)
                      .+|+|.|+..|+.+.++.+++....              ..+|..+..|.+|+++|+..++..++. |++.|+ +++..+
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~  142 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN  142 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC
Confidence            4677888888888775554443322              125788899999999999999988877 779998 999999


Q ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHH
Q psy14140         80 GDGATPLHFAA-----SRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHF  149 (207)
Q Consensus        80 ~~g~t~l~~a~-----~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~  149 (207)
                      ..|.||||+|+     ..++.+++++|++.|... ..+..|.||||+|+..++.+    |++.|++++..|..|+||||+
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC  222 (276)
T ss_dssp             TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence            99999999999     668899999999999888 88889999999999999987    568999999999999999999


Q ss_pred             HHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        150 AASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       150 a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      |+..|+.+++++|++ .|+++ .++..|+|||++|+..|+.+++++|
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999 89999 6999999999999999999995544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.5e-30  Score=179.74  Aligned_cols=161  Identities=19%  Similarity=0.260  Sum_probs=108.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCC-CCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTL-PDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~-~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~   79 (207)
                      .||||.|+.+|+.++                ++.+++.+.. ++..+..+.+|++.|+..++..++. |++.|++++..+
T Consensus         3 ~~~L~~A~~~g~~~~----------------v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   66 (172)
T 3v30_A            3 SLSIHQLAAQGELDQ----------------LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA   66 (172)
T ss_dssp             -CCHHHHHHTTCHHH----------------HHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             hhhHHHHHHcCCHHH----------------HHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc
Confidence            478999999999885                5566666654 5666777777777777777766665 667777777777


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      ..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.+    +++.|++++..+..|.|||++|+..+
T Consensus        67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           67 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhC
Confidence            77777777777777777777777777766 66666666666666666655    34566666666666666666666666


Q ss_pred             CHHHHHHHHHhCCCc-cCCCCCCCH
Q psy14140        155 HADCVRWLLRYGGKL-VPDKFGKSP  178 (207)
Q Consensus       155 ~~~~~~~Ll~~g~~~-~~~~~g~t~  178 (207)
                      +.+++++|++++++. .++..|.||
T Consensus       147 ~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          147 YRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHHHHHHHHSCC-------
T ss_pred             cHHHHHHHHHHHHHHhcccCCCCCC
Confidence            666666666666666 455555554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=6.6e-30  Score=194.23  Aligned_cols=179  Identities=22%  Similarity=0.257  Sum_probs=151.5

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCch----------hhcccchhhhhhhccCCchHH-HH-h
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYH----------EEAKLHGKLHGCTCRKGESTK-VR-D   70 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~----------~~~~~~~~~~a~~~~~~~~~~-ll-~   70 (207)
                      ||||+|+..|+.+                ++++++++|++++..          +..+.+|++.|+..++..++. |+ +
T Consensus       127 t~l~~A~~~~~~~----------------~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~  190 (337)
T 4g8k_A          127 TAFMEAAVYGKVK----------------ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  190 (337)
T ss_dssp             BHHHHHHHTTCHH----------------HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHcCcHH----------------HHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence            5666666666665                577777888777654          345678999999999988877 55 5


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hhh-cCCCCCCCC
Q psy14140         71 QGVDPNLKDGDGATPLHFAASRGH----ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRD-QGVDPNLKD  140 (207)
Q Consensus        71 ~g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~-~~~~~~~~~  140 (207)
                      .|++++.+|..|.|+++.++..+.    ..++++|++.|+++ .++..|.||||+|+..++.+    +++ .+++++..|
T Consensus       191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d  270 (337)
T 4g8k_A          191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  270 (337)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred             cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence            699999999999999998776433    36889999999999 89999999999999999887    333 589999999


Q ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        141 GDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       141 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..|+||||+|++.|+.+++++|+++|+++.    ..+||++|+.+|+.++      ++.||+.|++|
T Consensus       271 ~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n----~~~~L~~A~~~~~~~i------v~~Ll~~GA~~  327 (337)
T 4g8k_A          271 SDGKTALLLAVELKLKKIAELLCKRGASTD----CGDLVMTARRNYDHSL------VKVLLSHGAKE  327 (337)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHTTSCSST----TCCHHHHHHHTTCHHH------HHHHHHTTCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CCCHHHHHHHcCCHHH------HHHHHHCcCCC
Confidence            999999999999999999999999999883    3469999999999887      88899999986

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=5.1e-31  Score=197.08  Aligned_cols=167  Identities=23%  Similarity=0.307  Sum_probs=150.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+.+|+.++                +++|+++|++++..+..+.+|+++|+..++..++. |++.|++++..+.
T Consensus        74 ~t~L~~A~~~g~~~~----------------v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~  137 (299)
T 1s70_B           74 LTALHQACIDDNVDM----------------VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS  137 (299)
T ss_dssp             CBHHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence            489999999999974                88999999999999999999999999999988877 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-CCCc---------------------------CCCCCCCcHHHHHHhcChHH----
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRY-GGKL---------------------------VPDKFGKSPINDAAENQQME----  128 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~---------------------------~~~~~g~~~l~~a~~~~~~~----  128 (207)
                      .|.||||+|+..++.+++++++.. +.++                           ..+..|.||||+|+..++.+    
T Consensus       138 ~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  217 (299)
T 1s70_B          138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL  217 (299)
T ss_dssp             TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999999998877653 2221                           35678999999999999887    


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHH
Q psy14140        129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       129 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~  184 (207)
                      |++.|++++..|..|.||||+|+..|+.+++++|+++|+++ .++..|+|||++|.+
T Consensus       218 Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            56899999999999999999999999999999999999999 689999999999965

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=7.4e-30  Score=174.48  Aligned_cols=153  Identities=25%  Similarity=0.305  Sum_probs=100.5

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||.|+.+|+.++                +++|+++|++++..+..+.+|++.|+. ++..+.. |++.|++++.++..
T Consensus         7 ~~L~~A~~~g~~~~----------------v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~   69 (162)
T 1ihb_A            7 NELASAAARGDLEQ----------------LTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRT   69 (162)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hHHHHHHHcCCHHH----------------HHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCC
Confidence            56666666666653                555555666666666566666655555 4444433 45556666666666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                      |.||||+|+..++.+++++|++.|                            ++++..+..|.||||+|+..|+.+++++
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~  121 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQ----------------------------ADVNIEDNEGNLPLHLAAKEGHLRVVEF  121 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----------------------------CCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            666666666666666666665554                            4566677778888888888888888888


Q ss_pred             HHHhCCCc--cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        162 LLRYGGKL--VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       162 Ll~~g~~~--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      |+++|++.  ..+..|+|||++|+..|+.++      ++.|++.|++
T Consensus       122 Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~------~~~Ll~~GAd  162 (162)
T 1ihb_A          122 LVKHTASNVGHRNHKGDTACDLARLYGRNEV------VSLMQANGAG  162 (162)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHHTC--
T ss_pred             HHHccCCCCCCcCCCCCcHHHHHHHcCCHHH------HHHHHHhCCC
Confidence            88888774  577778888888888888776      6677777664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.1e-29  Score=173.53  Aligned_cols=145  Identities=32%  Similarity=0.506  Sum_probs=111.6

Q ss_pred             ccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH
Q psy14140         50 KLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM  127 (207)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~  127 (207)
                      +.++++.|+..++.+++. |++.|++++..|..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..++.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            345666666666666554 55667777777777777777777777777777777777776 6677777777777777766


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      +    +++.|++++..+..|.||||+|+..++.+++++|+++|+++ .++..|.|||++|+..++.+++++|
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            5    44677788888888999999999999999999999999998 6888899999999999988884433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.3e-29  Score=172.05  Aligned_cols=118  Identities=26%  Similarity=0.376  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHA  156 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~  156 (207)
                      ..|||+.|+..|+.+++++|++.|.++ ..+..|.||||+|+. ++.+    +++.|++++..+..|.||||.|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            457788888888888888888777777 777778888888777 6665    4567888888999999999999999999


Q ss_pred             HHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        157 DCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       157 ~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      +++++|+++|+++ .++..|+||||+|+..|+.++      ++.|++.|++
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~~g~~  128 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV------VEFLVKHTAS  128 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHHHSCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH------HHHHHHccCC
Confidence            9999999999999 688999999999999999887      6666766664

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.3e-29  Score=172.98  Aligned_cols=150  Identities=24%  Similarity=0.343  Sum_probs=96.6

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||.|+.+|+.++                +++|++.|.+++..+..+.+|++.|+..++..+.. |++.|++++..+..
T Consensus         5 t~L~~A~~~g~~~~----------------v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   68 (167)
T 3v31_A            5 LSVHQLAAQGEMLY----------------LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG   68 (167)
T ss_dssp             CCHHHHHHTTCHHH----------------HHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             chHHHHHHCCCHHH----------------HHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence            66666666666653                55555555555555555555555555555544443 44555555555555


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                      |.||||+|+..++.+++++|++.                            |++++..+..|.||||+|+..|+.+++++
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~----------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  120 (167)
T 3v31_A           69 RESALSLACSKGYTDIVKMLLDC----------------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKM  120 (167)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH----------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHC----------------------------CCCCCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            55555555555555555555554                            45566667777788888888888888888


Q ss_pred             HHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        162 LLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       162 Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                      |+++|+++ .++..|+|||++|+..|+.+++++|..
T Consensus       121 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          121 LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            88888877 577778888888888888887666543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-28  Score=169.84  Aligned_cols=149  Identities=25%  Similarity=0.308  Sum_probs=136.1

Q ss_pred             hhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHc
Q psy14140         14 VKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASR   92 (207)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~   92 (207)
                      ...+..++..+..    +++++|+++|++++..+..+.+|++.|+..++..+.. |++.|++++..|..|.||||+|+..
T Consensus        15 ~~~l~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           15 GKKLLEAARAGRD----DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             HHHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            3445566666666    8999999999999999999999999999999888776 7799999999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q psy14140         93 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  166 (207)
Q Consensus        93 ~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  166 (207)
                      ++.+++++|++.|+++ ..+..|.||||+|+..++.+    +++.|++++..|..|.||+++|+..++.+++++|++.|
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999 88999999999999999887    56799999999999999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.5e-29  Score=176.55  Aligned_cols=149  Identities=19%  Similarity=0.236  Sum_probs=139.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+..|+.++                +++|+++|++++..+..+.+|+++|+..++..+.. |++.|++++..|.
T Consensus        36 ~t~L~~A~~~g~~~~----------------v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   99 (192)
T 2rfm_A           36 RTPLMVACMLGMENA----------------IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF   99 (192)
T ss_dssp             CCHHHHHHHHTCGGG----------------HHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            489999999999985                77888889999999999999999999999988776 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.||||+|+..++.+++++|++.|+++ .++..|.||||+|+..++.+    +++.|++++..|..|.||+++|+..|+
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc
Confidence            9999999999999999999999999999 89999999999999999887    567999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q psy14140        156 ADCVRWLLRYG  166 (207)
Q Consensus       156 ~~~~~~Ll~~g  166 (207)
                      .+++++|+++|
T Consensus       180 ~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999999865

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.5e-28  Score=168.81  Aligned_cols=121  Identities=25%  Similarity=0.322  Sum_probs=109.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.||||.|+..|+.+++++|++.+.++ .++..|.||||+|+..++.+    +++.|++++..+..|.||||.|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            5789999999999999999999998888 88889999999999999877    567899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      .+++++|+++|+++ ..+..|.||||+|+..++.++      ++.|++.|++|
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~~g~~~  128 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC------VKMLLESGADP  128 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHH------HHHHHHcCCCC
Confidence            99999999999999 688999999999999999887      66677777764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=1.1e-29  Score=183.91  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=149.4

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCC------
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVD------   74 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~------   74 (207)
                      .||||+|+.+|+.++                +++|+++|++++..+..+.+|+++|+..++..+.. |++.|.+      
T Consensus        46 ~t~L~~A~~~~~~~~----------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  109 (236)
T 1ikn_D           46 QTPLHLAVITNQPEI----------------AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  109 (236)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHH
Confidence            489999999999875                77888889999999999999999999999988776 6788876      


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCC-CCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHH
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDK-FGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLH  148 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~-~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~  148 (207)
                      ++..+..|.||||+|+..++.+++++|++.|+++ .++. .|.||||+|+..++.+    |++.|++++..+..|.|||+
T Consensus       110 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHH
Confidence            4677889999999999999999999999999999 7776 9999999999999887    56899999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCc---cCCCCCCCHHHHHHHc
Q psy14140        149 FAASRGHADCVRWLLRYGGKL---VPDKFGKSPINDAAEN  185 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~---~~~~~g~t~l~~a~~~  185 (207)
                      +|+..++.+++++|+++|++.   .++..|.||++.+...
T Consensus       190 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             GCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999988   4778899988755543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=2.1e-29  Score=187.38  Aligned_cols=162  Identities=16%  Similarity=0.063  Sum_probs=144.7

Q ss_pred             HHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         30 SNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        30 ~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      .++.++|.++  +++..+..+.+|+++|+..++..++. |++.|++++..+  |.||||+|+..|+.+++++|++.|+++
T Consensus        13 ~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~   88 (285)
T 3kea_A           13 KQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD   88 (285)
T ss_dssp             HHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4667777766  57899999999999999999988776 789999999884  899999999999999999999999999


Q ss_pred             -CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCC-CcHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHH
Q psy14140        109 -VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDG-ATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDA  182 (207)
Q Consensus       109 -~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a  182 (207)
                       .++..|.||||+|+..++.+    +++.|++++..+..| .||||+|+..|+.+++++|+++|++......|.||||+|
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A  168 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT  168 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHH
Confidence             89999999999999999987    567899999999999 799999999999999999999998884444899999999


Q ss_pred             HHcCCcceeehHH
Q psy14140        183 AENQQMEVSTVSP  195 (207)
Q Consensus       183 ~~~~~~~~~~~l~  195 (207)
                      +..|+.+++++|-
T Consensus       169 ~~~g~~~~v~~Ll  181 (285)
T 3kea_A          169 IKNGHVDMMILLL  181 (285)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcChHHHHHHHH
Confidence            9999999855443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=6.5e-28  Score=174.42  Aligned_cols=181  Identities=25%  Similarity=0.264  Sum_probs=158.6

Q ss_pred             HHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC-CCCCCHHHHHHHcCC
Q psy14140         17 SSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD-GDGATPLHFAASRGH   94 (207)
Q Consensus        17 ~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~-~~g~t~l~~a~~~~~   94 (207)
                      +..++..+..    +++++|+++|++++..+..+.+|++.|+..++..+.. |++.|.+++..+ ..|.||||+|+..++
T Consensus        13 l~~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           13 IVKATQYGIY----ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             HHHHHHcCCh----HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            4455666655    7999999999999999999999999999999988776 779999988665 459999999999999


Q ss_pred             HHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC-HHHHHHHHHhCCC
Q psy14140         95 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH-ADCVRWLLRYGGK  168 (207)
Q Consensus        95 ~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~g~~  168 (207)
                      .+++++|++.|.++ ..+..|.||+|+|+..++.+    +++.+++++..+..|.|||+.|+..++ .+++++|++.|++
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~  168 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS  168 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC
Confidence            99999999999999 88999999999999999887    567999999999999999999996665 8999999999999


Q ss_pred             c-cCCC-CCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        169 L-VPDK-FGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       169 ~-~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      + ..+. .|.||||+|+..++.++      ++.|++.|++|
T Consensus       169 ~~~~~~~~g~t~L~~A~~~~~~~~------v~~Ll~~g~~~  203 (240)
T 3eu9_A          169 VNLGDKYHKNTALHWAVLAGNTTV------ISLLLEAGANV  203 (240)
T ss_dssp             TTCCCTTTCCCHHHHHHHHTCHHH------HHHHHHHTCCT
T ss_pred             cchhhccCCCcHHHHHHHcCCHHH------HHHHHHcCCCC
Confidence            9 4554 89999999999999987      66666666654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-28  Score=165.52  Aligned_cols=143  Identities=26%  Similarity=0.404  Sum_probs=130.0

Q ss_pred             cchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH
Q psy14140         51 LHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  128 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~  128 (207)
                      .++++.|+..++..+.. |++.|++++ .+..|.||||+|+..|+.+++++|++.|.++ ..+..|.||||+|+..++.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            45788888888877766 778898887 5788999999999999999999999999988 88999999999999999877


Q ss_pred             ----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        129 ----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       129 ----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                          +++.|++++..+..|.||||+|+..++.+++++|+++|+++ .++..|.|||++|+..|+.+++++|
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence                56789999999999999999999999999999999999999 6899999999999999999997765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3e-28  Score=168.12  Aligned_cols=147  Identities=27%  Similarity=0.331  Sum_probs=133.8

Q ss_pred             cchhhhhhhccCCchHH-HHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH
Q psy14140         51 LHGKLHGCTCRKGESTK-VRDQGVD-PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM  127 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll~~g~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~  127 (207)
                      .+|++.|+..++..+.. +++.+.+ ++..|..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..++.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            56889999998877766 7777776 8899999999999999999999999999999999 8899999999999999988


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      +    +++.|++++..+..|.||||+|+..++.+++++|+++|+++ .++..|+|||++|+..++.+++++|...
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            7    56799999999999999999999999999999999999999 6889999999999999999997766443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.6e-28  Score=171.66  Aligned_cols=149  Identities=23%  Similarity=0.358  Sum_probs=137.0

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HH-hcCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VR-DQGVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll-~~g~~~~~~~   79 (207)
                      .||||+|+.+|+.+                ++++|+++|++++..+..+.+|++.|+..++..+.. |+ ..+++++..+
T Consensus        40 ~t~L~~A~~~~~~~----------------~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  103 (201)
T 3hra_A           40 NTPLNIAVHNNDIE----------------IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN  103 (201)
T ss_dssp             CCHHHHHHHHTCHH----------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             CCHHHHHHHcCCHH----------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccc
Confidence            48999999999987                488999999999999999999999999999988877 55 7788999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhC-CCc-CCCCCCCcHHHHHHhcCh-----HH----HhhcCCCCCCCCCCCCcHHH
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYG-GKL-VPDKFGKSPINDAAENQQ-----ME----VRDQGVDPNLKDGDGATPLH  148 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~-~~~~~g~~~l~~a~~~~~-----~~----l~~~~~~~~~~~~~g~t~l~  148 (207)
                      ..|.||||+|+..++.+++++|++.+ .++ .++..|.||||+|+..+.     .+    +++.|++++..|..|.|||+
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  183 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD  183 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence            99999999999999999999999999 777 899999999999998776     44    66899999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHhC
Q psy14140        149 FAASRGHADCVRWLLRYG  166 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g  166 (207)
                      +|+..|+.+++++|+++|
T Consensus       184 ~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          184 YANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTCHHHHHHHHTCC
T ss_pred             HHHHcCCHhHHHHHHhcC
Confidence            999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.7e-28  Score=168.78  Aligned_cols=154  Identities=21%  Similarity=0.348  Sum_probs=133.2

Q ss_pred             hcccchhhhhhhccCCchHH-HHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhc
Q psy14140         48 EAKLHGKLHGCTCRKGESTK-VRDQ-GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  124 (207)
Q Consensus        48 ~~~~~~~~~a~~~~~~~~~~-ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~  124 (207)
                      +.+.++++.|+..++..++. +++. +.+++..+..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34567888899988887776 5555 7789999999999999999999999999999999988 8889999999999999


Q ss_pred             ChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHH
Q psy14140        125 QQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRR  199 (207)
Q Consensus       125 ~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~  199 (207)
                      ++.+    +++.|++++..|..|.||||+|+..++.+++++|+++|+++ .++..|+|||++|+..++.++      ++.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~------~~~  156 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL------RER  156 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHH------HHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHH------HHH
Confidence            9887    56789999999999999999999999999999999999999 689999999999999888776      677


Q ss_pred             HhhcccCC
Q psy14140        200 LLTIQKVP  207 (207)
Q Consensus       200 ll~~~~~p  207 (207)
                      |++.|++|
T Consensus       157 L~~~g~~~  164 (179)
T 3f6q_A          157 AEKMGQNL  164 (179)
T ss_dssp             HHHTTCCC
T ss_pred             HHHhhcCc
Confidence            77777764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=5.1e-28  Score=163.95  Aligned_cols=144  Identities=22%  Similarity=0.270  Sum_probs=132.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||.|+.+|+.++                +++|+++|.+++ .+..+.+|++.|+..++..+.. |++.|++++..+.
T Consensus         3 ~~~L~~A~~~g~~~~----------------v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   65 (153)
T 1awc_B            3 GKKLLEAARAGQDDE----------------VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK   65 (153)
T ss_dssp             HHHHHHHHHHTCHHH----------------HHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cHHHHHHHHcCCHHH----------------HHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            479999999999985                778888888776 4778899999999999988776 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.+    +++.|++++..+..|.||+++|+..|+
T Consensus        66 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999 89999999999999999887    567999999999999999999999999


Q ss_pred             HHHHHHH
Q psy14140        156 ADCVRWL  162 (207)
Q Consensus       156 ~~~~~~L  162 (207)
                      .+++++|
T Consensus       146 ~~i~~~L  152 (153)
T 1awc_B          146 EDLAEIL  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-28  Score=186.56  Aligned_cols=134  Identities=25%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             HHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcCh-------HHHhhcC-CCCC
Q psy14140         68 VRDQGVDPNL-KDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQ-------MEVRDQG-VDPN  137 (207)
Q Consensus        68 ll~~g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~-------~~l~~~~-~~~~  137 (207)
                      +++.|+++|. .|..|.||||+|+..|+.+++++|++.|+++ .++..|.||||+|+..++       ..+++.+ .+++
T Consensus       116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            4577788887 6888888888888888888888888888877 777888888888887766       3455554 5677


Q ss_pred             CCCCCCCcHHHHHHH----CCCHHHHHHHHHhCC---------------------------------------------C
Q psy14140        138 LKDGDGATPLHFAAS----RGHADCVRWLLRYGG---------------------------------------------K  168 (207)
Q Consensus       138 ~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~g~---------------------------------------------~  168 (207)
                      ..+..|+||||+|+.    .|+.+++++|++.+.                                             +
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~  275 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  275 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC
Confidence            777888888888887    778888888776632                                             3


Q ss_pred             c-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        169 L-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       169 ~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      + .++..|+||||+|+..|+.++      ++.|++.|++|
T Consensus       276 ~n~~d~~G~TpLh~A~~~g~~~~------v~~Ll~~Gad~  309 (327)
T 1sw6_A          276 LNAQDSNGDTCLNIAARLGNISI------VDALLDYGADP  309 (327)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHH------HHHHHHTTCCT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHH------HHHHHHcCCCC
Confidence            5 477889999999999999887      78888888875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.4e-31  Score=193.07  Aligned_cols=172  Identities=17%  Similarity=0.107  Sum_probs=112.8

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||+|+..|+.++                +++|+++|+++|..+..+.+|+++|+..++..+.. |++.|++++.+|..
T Consensus        23 t~L~~A~~~g~~~~----------------v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~   86 (229)
T 2vge_A           23 VLLLDAALTGELEV----------------VQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH   86 (229)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHHcCCHHH----------------HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            45666666666653                55666666666666666666666666666655554 55666666666666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC-CCCCcHHHHH--HhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHC
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPD-KFGKSPINDA--AENQQME----VRDQGVDPNLKDGDGATPLHFAASR  153 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~-~~g~~~l~~a--~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~  153 (207)
                      |.||||+|+..|+.+++++|++.|+++ ..+ ..|.||||+|  +..++.+    |++.|++++..+..|.|+++.++..
T Consensus        87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhc
Confidence            666666666666666666666666666 443 4666666666  6666555    3456666666666666666543333


Q ss_pred             CCHHHHHHHHHhCCCc---cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        154 GHADCVRWLLRYGGKL---VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~---~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                      .   ..++|++.|+++   .+|..|+||||+|+..|+.++++-
T Consensus       167 ~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          167 F---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             S---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             c---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            2   224555666664   478889999999999999999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.9e-27  Score=171.57  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=137.3

Q ss_pred             ccchhhhhhhccCCchHH-HHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc------CCCCCCCcHHHHH
Q psy14140         50 KLHGKLHGCTCRKGESTK-VRDQ-GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL------VPDKFGKSPINDA  121 (207)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~-ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~------~~~~~g~~~l~~a  121 (207)
                      +.+|++.|+..++..++. |++. |++++.+|..|.||||+|+..|+.+++++|++.+.++      ..+..|.||||+|
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            578999999999988776 6766 9999999999999999999999999999999998875      4566899999999


Q ss_pred             HhcChHH----HhhcCCCCCCCCC-------------CCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        122 AENQQME----VRDQGVDPNLKDG-------------DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       122 ~~~~~~~----l~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      +..++.+    +++.|++++..+.             .|.||||+|+..|+.+++++|+++|+++ .++..|+||||+|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~  162 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI  162 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999987    5678999888765             7999999999999999999999999999 68999999999999


Q ss_pred             HcCCcceeehHHHHHHHhhcccCC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ..++.+++.  ..++.|++.|+++
T Consensus       163 ~~~~~~~~~--~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          163 LQPNKTFAC--QMYNLLLSYDGGD  184 (232)
T ss_dssp             TCSCHHHHH--HHHHHHHHTTCSC
T ss_pred             HcCChHHHH--HHHHHHHhcCCch
Confidence            999998742  2347778777653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5e-28  Score=168.15  Aligned_cols=152  Identities=20%  Similarity=0.276  Sum_probs=140.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHc-CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQH-GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD   79 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~-g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~   79 (207)
                      .+|||.|+..|+.++                ++.|+++ +.+++..+..+.+|++.|+..++..+.. |++.|++++..|
T Consensus         6 ~~~l~~A~~~g~~~~----------------v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   69 (179)
T 3f6q_A            6 MDDIFTQCREGNAVA----------------VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN   69 (179)
T ss_dssp             -CCHHHHHHHTCHHH----------------HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHHcCCHHH----------------HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC
Confidence            489999999999986                6666666 5678999999999999999999988776 779999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      ..|.||||+|+..++.+++++|++.|+++ ..+..|.||||+|+..++.+    +++.|++++..+..|.||+++|+..+
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           70 RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHH
Confidence            99999999999999999999999999999 89999999999999999887    56899999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCc
Q psy14140        155 HADCVRWLLRYGGKL  169 (207)
Q Consensus       155 ~~~~~~~Ll~~g~~~  169 (207)
                      +.+++++|++.|+++
T Consensus       150 ~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          150 RELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhhcCc
Confidence            999999999999998

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.3e-29  Score=181.88  Aligned_cols=169  Identities=19%  Similarity=0.212  Sum_probs=124.3

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      +||||.|+..|+.+.                ++.|+++|+++++. ..+.++++.|+..++..++. |++.|++++..|.
T Consensus         6 ~t~L~~a~~~~~~~~----------------~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~   68 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKT----------------GSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND   68 (239)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT
T ss_pred             cccCchhhhhhhHHH----------------HHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            589999999999985                78888899988864 67789999999999988776 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC-cHHHHH--HH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA-TPLHFA--AS  152 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~-t~l~~a--~~  152 (207)
                      .|.||||+|+..|+.+++++|++.|+++ .+|..|.||||+|+..++.+    |++.|++++..+..|. ||+++|  +.
T Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~  148 (239)
T 1ycs_B           69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME  148 (239)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhh
Confidence            9999999999999999999999999999 89999999999999999887    5689999999998877 999999  78


Q ss_pred             CCCHHHHHHHHHhCCCc-c---------CCCCCCCHHHHHHHcCC
Q psy14140        153 RGHADCVRWLLRYGGKL-V---------PDKFGKSPINDAAENQQ  187 (207)
Q Consensus       153 ~~~~~~~~~Ll~~g~~~-~---------~~~~g~t~l~~a~~~~~  187 (207)
                      .|+.+++++|++.|+++ .         .+..+.++++++.+.|.
T Consensus       149 ~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             TTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            89999999999998776 2         26678899988888775

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.3e-27  Score=163.91  Aligned_cols=153  Identities=25%  Similarity=0.339  Sum_probs=133.9

Q ss_pred             hhhcccchhhhhhhccCCchHH-HHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHH
Q psy14140         46 HEEAKLHGKLHGCTCRKGESTK-VRD-QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  122 (207)
Q Consensus        46 ~~~~~~~~~~~a~~~~~~~~~~-ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~  122 (207)
                      .+..+.++++.|+..++..+.. +++ .+.+++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            3556778999999999888776 554 67788888999999999999999999999999999999 89999999999999


Q ss_pred             hcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        123 ENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       123 ~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      ..++.+    +++.|++++..|..|.||||+|+..|+.+++++|+++|+++ .++..|+|||++|.. ++.++      +
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i------~  156 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDI------Q  156 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHH------H
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHH------H
Confidence            999887    56899999999999999999999999999999999999999 689999999999877 77777      5


Q ss_pred             HHHhhccc
Q psy14140        198 RRLLTIQK  205 (207)
Q Consensus       198 ~~ll~~~~  205 (207)
                      +.|++.|+
T Consensus       157 ~~L~~~gA  164 (165)
T 3twr_A          157 DLLRGDAA  164 (165)
T ss_dssp             HHHHTC--
T ss_pred             HHHhhccc
Confidence            66666554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.9e-27  Score=161.51  Aligned_cols=144  Identities=27%  Similarity=0.377  Sum_probs=91.8

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHc-CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQH-GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~-g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      ||||.|+..|+.++                ++.|+++ +.+++..+..+.+|++. +..++..+.. |++.|++++.+|.
T Consensus         4 ~~L~~A~~~g~~~~----------------v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~   66 (156)
T 1bd8_A            4 DRLSGAAARGDVQE----------------VRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT   66 (156)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hHHHHHHHhCCHHH----------------HHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC
Confidence            57777777777765                4455554 33666666667777666 5555555544 5566777777777


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      .|.||||+|+..|+.+++++|++.|.+                            ++..|..|.||||+|+..|+.++++
T Consensus        67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~  118 (156)
T 1bd8_A           67 SGTSPVHDAARTGFLDTLKVLVEHGAD----------------------------VNVPDGTGALPIHLAVQEGHTAVVS  118 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------SCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC----------------------------CCCcCCCCCcHHHHHHHhChHHHHH
Confidence            777777777777777777777766654                            4555556666666666666666666


Q ss_pred             HHHHhCCCc-cCCCCCCCHHHHHHHcCCcceee
Q psy14140        161 WLLRYGGKL-VPDKFGKSPINDAAENQQMEVST  192 (207)
Q Consensus       161 ~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~  192 (207)
                      +|++. +++ .++..|.|||++|+..|+.++++
T Consensus       119 ~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A          119 FLAAE-SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            66655 555 45556666666666666666533

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=175.38  Aligned_cols=149  Identities=22%  Similarity=0.240  Sum_probs=134.5

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCC-CCCchhhcccchhhhhhhc-----cCCchHH-HHhcCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGT-LPDYHEEAKLHGKLHGCTC-----RKGESTK-VRDQGVD   74 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~-~~~~~~~~~~~~~~~a~~~-----~~~~~~~-ll~~g~~   74 (207)
                      .||||+|+..|+.++                +++|+++|+ +++..+..+.+|++.|+..     ++..+.. +++.|.+
T Consensus       112 ~T~Lh~A~~~g~~~~----------------v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~  175 (276)
T 4hbd_A          112 NTALHYSVSHANFPV----------------VQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI  175 (276)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHCCCHHH----------------HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC
Confidence            489999999999985                888899998 9999999999999998844     3333333 7799999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hhh-cCCCCCCCCCCCCcHHH
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRD-QGVDPNLKDGDGATPLH  148 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~-~~~~~~~~~~~g~t~l~  148 (207)
                      .+..+..|.||||+|+..|+.+++++|++.|+++ .+|..|.||||+|+..++.+    |++ .|++++..|..|.|||+
T Consensus       176 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          176 NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALM  255 (276)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHH
Confidence            9999999999999999999999999999999999 89999999999999999887    456 89999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHhC
Q psy14140        149 FAASRGHADCVRWLLRYG  166 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g  166 (207)
                      +|+..|+.+++++|++++
T Consensus       256 ~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          256 VALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHhcc
Confidence            999999999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=3e-28  Score=180.01  Aligned_cols=173  Identities=16%  Similarity=0.174  Sum_probs=134.0

Q ss_pred             CCcceeehcc---CChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC
Q psy14140          2 AHPLFIRAVS---GDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL   77 (207)
Q Consensus         2 ~tpl~~Aa~~---g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~   77 (207)
                      .||||+|+..   |+.++++.|++.+....   .++.++...  .+..+..+.+|+++|+..++..++. |++.|++++.
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~---~~~~~i~~~--~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTD---SLKQFVNAS--YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTT---CHHHHHTCC--CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhcccc---chhHHhhcc--cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            4899999986   99998777776654421   122222222  2335568899999999999988877 7799999999


Q ss_pred             CCC--------------CCCCHHHHHHHcCCHHHHHHHHH---hCCCc-CCCCCCCcHHHHHHhcCh---------HH--
Q psy14140         78 KDG--------------DGATPLHFAASRGHADCVRWLLR---YGGKL-VPDKFGKSPINDAAENQQ---------ME--  128 (207)
Q Consensus        78 ~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~-~~~~~g~~~l~~a~~~~~---------~~--  128 (207)
                      .+.              .|.||||+|+..|+.+++++|++   .|+++ .+|..|.||||+|+..++         .+  
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            987              79999999999999999999999   89999 999999999999998775         33  


Q ss_pred             --HhhcCCCCC-------CCCCCCCcHHHHHHHCCCHHHHHHHHHhCC-Cc-cCCCCCCCHH
Q psy14140        129 --VRDQGVDPN-------LKDGDGATPLHFAASRGHADCVRWLLRYGG-KL-VPDKFGKSPI  179 (207)
Q Consensus       129 --l~~~~~~~~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~-~~~~~g~t~l  179 (207)
                        |++.|++++       ..|..|.||||+|+..|+.+++++|+++|+ ++ .....+.+|.
T Consensus       210 ~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence              567788876       489999999999999999999999999999 66 3444455554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.3e-27  Score=157.66  Aligned_cols=128  Identities=29%  Similarity=0.417  Sum_probs=116.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCC-CCc
Q psy14140         72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGD-GAT  145 (207)
Q Consensus        72 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~-g~t  145 (207)
                      +++++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+. ++.+    +++.|++++..+.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            5788999999999999999999999999999999988 888999999999999 8877    56789999999999 999


Q ss_pred             HHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        146 PLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       146 ~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      |||+|+..|+.+++++|+++|+++ .++..|+|||++|+..++.++      ++.|++.|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~------~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI------ARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHH------HHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH------HHHHHHcCCC
Confidence            999999999999999999999999 688999999999999999887      6777777764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.6e-27  Score=159.64  Aligned_cols=112  Identities=30%  Similarity=0.436  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhC-CCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYG-GKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~-~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      +.|||+.|+..|+.+++++|++.. .++ ..+..|.||||+ +..++.+    +++.|++++..+..|.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            357888888888888888888882 244 778888888888 7777766    567888999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .+++++|+++|+++ .++..|+||||+|+..|+.+++++|
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  120 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL  120 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHH
Confidence            99999999999999 6889999999999999999985544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=9.5e-28  Score=164.54  Aligned_cols=150  Identities=25%  Similarity=0.364  Sum_probs=132.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||.|+.+|+.++++.+++.               .+.+++..+..+.+|++.|+..++..+.. |++.|++++.+|.
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~---------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   73 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTV---------------QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK   73 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCT---------------TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hHHHHHHHHhCCHHHHHHHHHc---------------CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC
Confidence            3789999999999975544432               34566777888899999999999988776 7899999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..++.+    +++.|++++..|..|.||+++|.. ++
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~  152 (165)
T 3twr_A           74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD  152 (165)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC
Confidence            9999999999999999999999999999 89999999999999999887    568999999999999999999777 89


Q ss_pred             HHHHHHHHHhCC
Q psy14140        156 ADCVRWLLRYGG  167 (207)
Q Consensus       156 ~~~~~~Ll~~g~  167 (207)
                      .+++++|+++|+
T Consensus       153 ~~i~~~L~~~gA  164 (165)
T 3twr_A          153 TDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHHTC--
T ss_pred             hHHHHHHhhccc
Confidence            999999998875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=5.3e-28  Score=177.03  Aligned_cols=152  Identities=22%  Similarity=0.264  Sum_probs=131.2

Q ss_pred             CCcceeehcc---CChhHHHHHhhccchhhHHHHHHHHHHcCCCCC-----------chhhcccchhhhhhhccCCchHH
Q psy14140          2 AHPLFIRAVS---GDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPD-----------YHEEAKLHGKLHGCTCRKGESTK   67 (207)
Q Consensus         2 ~tpl~~Aa~~---g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~   67 (207)
                      .||||+|+.+   |+.++++                +|+++|++++           ..+..+.+|++.|+..++..+..
T Consensus        44 ~t~L~~A~~~~~~g~~~~v~----------------~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~  107 (256)
T 2etb_A           44 KTCLMKAVLNLQDGVNACIM----------------PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK  107 (256)
T ss_dssp             BCHHHHHHHTCBTTBCTTHH----------------HHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHccccchHHHHH----------------HHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHH
Confidence            4899999999   9998755                4555554443           23467899999999999988877


Q ss_pred             -HHhcCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHH---hCCCc-CCCCCCCcHHHHHHh--cChH
Q psy14140         68 -VRDQGVDPNLKDGD-------------GATPLHFAASRGHADCVRWLLR---YGGKL-VPDKFGKSPINDAAE--NQQM  127 (207)
Q Consensus        68 -ll~~g~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~-~~~~~g~~~l~~a~~--~~~~  127 (207)
                       |++.|++++..+..             |.||||+|+..|+.+++++|++   .|+++ .+|..|.||||+|+.  .++.
T Consensus       108 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH
T ss_pred             HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc
Confidence             77999999999886             9999999999999999999999   89999 999999999999998  5554


Q ss_pred             H-----------HhhcCCCC-------CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        128 E-----------VRDQGVDP-------NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       128 ~-----------l~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      +           |++.|+++       +..|..|.||||+|+..|+.+++++|+++|.+.
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            3           55788888       889999999999999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.4e-27  Score=175.12  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=135.8

Q ss_pred             CCcceeeh---ccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC
Q psy14140          2 AHPLFIRA---VSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL   77 (207)
Q Consensus         2 ~tpl~~Aa---~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~   77 (207)
                      .||||+|+   .+|+.++++.|++.+.....   +..++  ....+..+..+.+|+++|+..++..++. |++.|++++.
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~---~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGN---MREFI--NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC---HHHHH--TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccc---hHhhh--cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc
Confidence            48999999   77999987777776554221   11111  2444555668999999999999988877 7799999999


Q ss_pred             CC--------------CCCCCHHHHHHHcCCHHHHHHHHH---hCCCc-CCCCCCCcHHHHHHhcCh---------HH--
Q psy14140         78 KD--------------GDGATPLHFAASRGHADCVRWLLR---YGGKL-VPDKFGKSPINDAAENQQ---------ME--  128 (207)
Q Consensus        78 ~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~-~~~~~g~~~l~~a~~~~~---------~~--  128 (207)
                      .+              ..|.||||+|+..|+.+++++|++   .|+++ .+|..|.||||+|+..++         .+  
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            98              689999999999999999999999   89999 999999999999997665         23  


Q ss_pred             --HhhcCCCC-------CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        129 --VRDQGVDP-------NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       129 --l~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                        |++.|+++       +..|..|.||||+|+..|+.+++++|+++|.+.
T Consensus       202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence              56778887       678999999999999999999999999998776

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1e-26  Score=168.73  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=107.3

Q ss_pred             hcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcC
Q psy14140         48 EAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  125 (207)
Q Consensus        48 ~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~  125 (207)
                      ..|.+|++.|+..+...... ++++|++++.. ..|.||||.|+..|+.+++++|++.|.++ .++..|.||||+|+..+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            35788999988888777655 88999999865 67899999999999999999999999988 89999999999999999


Q ss_pred             hHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCC-CHHHHH--HHcCCcceeehHHHH
Q psy14140        126 QME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGK-SPINDA--AENQQMEVSTVSPVV  197 (207)
Q Consensus       126 ~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~-t~l~~a--~~~~~~~~~~~l~~~  197 (207)
                      +.+    |++.|++++..|..|+||||+|+..|+.+++++|+++|+++ ..+..|. ||||+|  +..|+.+++++|...
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            987    56789999999999999999999999999999999999999 5776666 999999  788999996666544


Q ss_pred             HH
Q psy14140        198 RR  199 (207)
Q Consensus       198 ~~  199 (207)
                      ..
T Consensus       162 ~a  163 (239)
T 1ycs_B          162 QE  163 (239)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.1e-25  Score=149.47  Aligned_cols=128  Identities=23%  Similarity=0.329  Sum_probs=119.8

Q ss_pred             CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCC-CCc
Q psy14140         40 GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKF-GKS  116 (207)
Q Consensus        40 g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~-g~~  116 (207)
                      +++++..+..+.+|++.|+..++..+.. |++.|++++.+|..|.||||+|+. ++.+++++|++.|+++ .++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            5688999999999999999999988776 789999999999999999999999 9999999999999999 88888 999


Q ss_pred             HHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCC
Q psy14140        117 PINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK  168 (207)
Q Consensus       117 ~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  168 (207)
                      |||+|+..++.+    +++.|++++..|..|.|||++|+..++.+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999887    5679999999999999999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.7e-26  Score=153.70  Aligned_cols=134  Identities=23%  Similarity=0.267  Sum_probs=74.9

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||+|+..|+.++                +++|+++|++++..+..+.+|++.|+ .++..+.. |++.|++++.+|..
T Consensus        14 t~L~~A~~~g~~~~----------------v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~   76 (156)
T 1bi7_B           14 DWLATAAARGRVEE----------------VRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA   76 (156)
T ss_dssp             THHHHHHHHTCHHH----------------HHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT
T ss_pred             HHHHHHHHcCCHHH----------------HHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC
Confidence            55555555555543                55555555555555555555555542 33333333 44555555555555


Q ss_pred             CCC-HHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140         82 GAT-PLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus        82 g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      |.| |||+|+..++.+++++|++.                            |++++..+..|.||||+|+..|+.++++
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~----------------------------ga~~~~~d~~g~tpl~~A~~~~~~~~v~  128 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRA----------------------------GARLDVRDAWGRLPVDLAEELGHRDVAR  128 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHH----------------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHc----------------------------CCCCcccCCCCCCHHHHHHHhCHHHHHH
Confidence            555 55555555555555555555                            4567777888899999999999999999


Q ss_pred             HHHHhCCCc-cCCCCCCCHHHH
Q psy14140        161 WLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       161 ~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                      +|+++|+++ .++..|.||.+.
T Consensus       129 ~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B          129 YLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHSSCC----------------
T ss_pred             HHHHcCCCCCccCcCcCccccc
Confidence            999999999 678888888763

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=8.7e-26  Score=150.15  Aligned_cols=124  Identities=28%  Similarity=0.496  Sum_probs=109.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcH
Q psy14140         72 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATP  146 (207)
Q Consensus        72 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~  146 (207)
                      |+|+ .+|..|.||||+|+..|+.+++++|++.|.++ .++..|.||||+|+..++.+    +++.|++++..+..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            5677 78889999999999999999999999999988 88999999999999999877    567899999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        147 LHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       147 l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                      ||+|+..++.+++++|+++|+++ .++..|.|||++|+..+..++++++..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            99999999999999999999999 689999999999999888887666543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.2e-24  Score=140.98  Aligned_cols=120  Identities=43%  Similarity=0.695  Sum_probs=107.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      +|.||||+|+..|+.+++++|++.+.++ ..+..|.||||+|+..++.+    +++.|.+++..+..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            4789999999999999999999998888 88889999999999988877    457889999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      .+++++|+++|+++ .++..|.|||++|+..++.++      ++.|++.|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~------~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV------VKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHH------HHHHHHcCCC
Confidence            99999999999999 688899999999999998887      6777777764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.9e-25  Score=150.21  Aligned_cols=126  Identities=31%  Similarity=0.397  Sum_probs=108.4

Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCc-HHH
Q psy14140         75 PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGAT-PLH  148 (207)
Q Consensus        75 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t-~l~  148 (207)
                      .+..+..|.||||+|+..|+.+++++|++.|.++ ..+..|.||||+|+ .++.+    |++.|++++..+..|.| |||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            3455678899999999999999999999999988 88899999999985 67766    56789999999999999 999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        149 FAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      +|+..|+.+++++|+++|+++ .++..|+||||+|+..|+.++      ++.|++.|++|
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~------v~~Ll~~ga~~  137 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV------ARYLRAAAGGT  137 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHH------HHHHSSCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHH------HHHHHHcCCCC
Confidence            999999999999999999999 688999999999999999987      67778877764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.2e-24  Score=144.42  Aligned_cols=116  Identities=32%  Similarity=0.477  Sum_probs=92.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHC
Q psy14140         79 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASR  153 (207)
Q Consensus        79 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~  153 (207)
                      ...+.||||+|+..|+.+++++|++.|.++ ..+..|.||||+|+..++.+    +++.|++++..|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            345667777777777777777777777777 67777777777777777765    4567778888888899999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ++.+++++|+++|+++ .++..|+|||++|+..++.+++++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            9999999999999888 6888899999999999988874443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.7e-25  Score=154.45  Aligned_cols=144  Identities=16%  Similarity=0.134  Sum_probs=91.3

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchh-hcccchhhhhhhccCCc----hH-HHHhcCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHE-EAKLHGKLHGCTCRKGE----ST-KVRDQGVDPN   76 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~-~~~~~~~~~a~~~~~~~----~~-~ll~~g~~~~   76 (207)
                      ++||.||..|+.+.                ++.+++.+.  +..+ ..|.+|+++|+..++..    +. .|++.|+++|
T Consensus         8 ~~l~~Aa~~g~~~~----------------~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn   69 (186)
T 3t8k_A            8 RTVSAAAMLGTYED----------------FLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK   69 (186)
T ss_dssp             SSHHHHHHHSCHHH----------------HHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred             cHHHHHHHcCCHHH----------------HHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence            67888888888885                444444443  4444 67788888887776532    33 3778888888


Q ss_pred             CCCCCCCCHHHHHHHcCC------HHHHHHHHHhCCCc-CCCCCCC-cHHHHHHhcCh-----HH----Hhh-cCCCCCC
Q psy14140         77 LKDGDGATPLHFAASRGH------ADCVRWLLRYGGKL-VPDKFGK-SPINDAAENQQ-----ME----VRD-QGVDPNL  138 (207)
Q Consensus        77 ~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~-~~~~~g~-~~l~~a~~~~~-----~~----l~~-~~~~~~~  138 (207)
                      .+|..|+||||+|+..++      .+++++|++.|+++ .+|..|. ||||+|+..+.     .+    +++ .|++++.
T Consensus        70 ~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~  149 (186)
T 3t8k_A           70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI  149 (186)
T ss_dssp             CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred             CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence            888888888888888776      56788888888777 6667776 77777665321     01    223 4444444


Q ss_pred             CCCCCCcHHHHHHHCCCHHHHHHHHH
Q psy14140        139 KDGDGATPLHFAASRGHADCVRWLLR  164 (207)
Q Consensus       139 ~~~~g~t~l~~a~~~~~~~~~~~Ll~  164 (207)
                      .|..|.||||+|++.++.+++++|.+
T Consensus       150 ~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          150 KDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             CCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44444444444444444444444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=4.4e-26  Score=164.31  Aligned_cols=154  Identities=20%  Similarity=0.253  Sum_probs=126.2

Q ss_pred             HHHHHHcCCCCCchh---hcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         33 LSLLVQHGTLPDYHE---EAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        33 v~~ll~~g~~~~~~~---~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      ++.|+++|++++..+   .++.++++.|+..++..++. |++.|++++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            467788888876544   45567788899999888776 77999999999999999999999999999999999999999


Q ss_pred             -CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-CCCCcHHHHH--HHCCCHHHHHHHHHhCCCc-cCCCCCCCHH
Q psy14140        109 -VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-GDGATPLHFA--ASRGHADCVRWLLRYGGKL-VPDKFGKSPI  179 (207)
Q Consensus       109 -~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l  179 (207)
                       .+|..|.||||+|+..++.+    |++.|++++..+ ..|.|||++|  +..++.+++++|++.|+++ ..+..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence             88999999999999999887    567899999886 5999999999  8999999999999999999 5777788888


Q ss_pred             HHHHHcC
Q psy14140        180 NDAAENQ  186 (207)
Q Consensus       180 ~~a~~~~  186 (207)
                      +.+....
T Consensus       161 ~~~~~~~  167 (229)
T 2vge_A          161 WDYSAEF  167 (229)
T ss_dssp             SCBCCSS
T ss_pred             HHHhhcc
Confidence            8554443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=3.2e-25  Score=154.76  Aligned_cols=148  Identities=11%  Similarity=0.022  Sum_probs=124.5

Q ss_pred             ccchhhhhhhccCCchHH-HHhcCCCCCCCC-CCCCCHHHHHHHcCCH----HHHHHHHHhCCCc-CCCCCCCcHHHHHH
Q psy14140         50 KLHGKLHGCTCRKGESTK-VRDQGVDPNLKD-GDGATPLHFAASRGHA----DCVRWLLRYGGKL-VPDKFGKSPINDAA  122 (207)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~-~~~~~g~~~l~~a~  122 (207)
                      +.++++.|+..++..... ++..+  ++..+ ..|.||||+|+..++.    +++++|++.|+++ .++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            446778888888766554 55655  45555 6799999999999875    5899999999999 99999999999999


Q ss_pred             hcCh------HH----HhhcCCCCCCCCCCCC-cHHHHHHHCC-----CHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHH
Q psy14140        123 ENQQ------ME----VRDQGVDPNLKDGDGA-TPLHFAASRG-----HADCVRWLLR-YGGKL-VPDKFGKSPINDAAE  184 (207)
Q Consensus       123 ~~~~------~~----l~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~  184 (207)
                      ..++      .+    |++.|++++..|..|. ||||+|+..+     ..+++++|++ +|+++ .++..|+||||+|++
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            8875      12    6789999999999999 9999999854     3568999999 99999 799999999999999


Q ss_pred             cCCcceeehHHHHHH
Q psy14140        185 NQQMEVSTVSPVVRR  199 (207)
Q Consensus       185 ~~~~~~~~~l~~~~~  199 (207)
                      .++.+++++|.....
T Consensus       164 ~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          164 CQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999999888765543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=3.5e-23  Score=137.36  Aligned_cols=120  Identities=27%  Similarity=0.388  Sum_probs=110.1

Q ss_pred             hhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhc
Q psy14140         47 EEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  124 (207)
Q Consensus        47 ~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~  124 (207)
                      ...+.++++.|+..++..+.. |++.|++++..|..|.||||+|+..++.+++++|++.|+++ ..+..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            345678899999999988776 78999999999999999999999999999999999999999 8899999999999999


Q ss_pred             ChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q psy14140        125 QQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  166 (207)
Q Consensus       125 ~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  166 (207)
                      ++.+    +++.|++++..|..|.|||++|+..++.+++++|++.|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9887    56799999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=1e-22  Score=132.96  Aligned_cols=119  Identities=39%  Similarity=0.577  Sum_probs=110.6

Q ss_pred             ccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH
Q psy14140         50 KLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM  127 (207)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~  127 (207)
                      |.+|++.|+..++..+.. |++.|++++..+..|.||||+|+..++.+++++|++.|.++ .++..|.||||+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            678999999999887776 77999999999999999999999999999999999999998 8899999999999999988


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCC
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGK  168 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  168 (207)
                      +    +++.|++++..+..|.||+++|+..++.+++++|+++|++
T Consensus        82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7    5678999999999999999999999999999999999975

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=7.8e-24  Score=153.98  Aligned_cols=134  Identities=23%  Similarity=0.287  Sum_probs=92.6

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC-C
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD-G   80 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~-~   80 (207)
                      ||||+|+..|+.++                ++.|++ |+++|..+..+.+|+++|+..++..++. |++.|++++.++ .
T Consensus        47 t~L~~A~~~g~~~~----------------v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  109 (244)
T 3ui2_A           47 TPWWTAARKADEQA----------------LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR  109 (244)
T ss_dssp             HHHHHHHTTTCHHH----------------HHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             CHHHHHHHcCCHHH----------------HHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC
Confidence            56666666666653                556666 6677777777777777777777766655 557777777776 6


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCV  159 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  159 (207)
                      .|.||||+|+..|+.+++++|++.|+++ .++..|.||+|+|+..+             ....+.|||++|+..|+.+++
T Consensus       110 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-------------~~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A          110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-------------KTTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-------------hccCCCCHHHHHHHcChHHHH
Confidence            6777777777777777777777777777 67777777777776421             124566777777777777777


Q ss_pred             HHHHHhC
Q psy14140        160 RWLLRYG  166 (207)
Q Consensus       160 ~~Ll~~g  166 (207)
                      ++|++.+
T Consensus       177 ~~L~~~~  183 (244)
T 3ui2_A          177 NVLEGQV  183 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7777653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=9.8e-24  Score=146.96  Aligned_cols=130  Identities=22%  Similarity=0.234  Sum_probs=77.4

Q ss_pred             hcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC-CCCCcHHHHHHhc
Q psy14140         48 EAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD-KFGKSPINDAAEN  124 (207)
Q Consensus        48 ~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~-~~g~~~l~~a~~~  124 (207)
                      ..+.+|++.|+..++..+.. |++ |++++..|..|.||||+|+..|+.+++++|++.|+++ ..+ ..|.||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            44556666666666555544 344 6666666666666666666666666666666666666 444 5666666666666


Q ss_pred             ChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        125 QQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       125 ~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ++.+    +++.|++++..|..|.|||++|+..++.                ..+.++|++|+..|..+++++|
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHH
Confidence            6555    3456666666666666666666553222                1345666666666666654443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2e-23  Score=136.18  Aligned_cols=107  Identities=26%  Similarity=0.336  Sum_probs=92.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHC
Q psy14140         79 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASR  153 (207)
Q Consensus        79 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~  153 (207)
                      ++.|.||||+|+..|+.+++++|++.+.++ .++..|.||||+|+..++.+    +++.|++++..|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            456778889999998999999888888888 78888889999998888876    4578889999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHc
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  185 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~  185 (207)
                      ++.+++++|+++|+++ .++..|+|||++|...
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            9999999999999999 6899999999999443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.2e-23  Score=153.07  Aligned_cols=158  Identities=20%  Similarity=0.173  Sum_probs=128.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      +|+.+++..|+.+.+..+....                   ...+..+.+|++.|+..++..++. |++ |++++.+|..
T Consensus        17 ~~~l~~~~~g~~~~~~~~~~~~-------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~   76 (244)
T 3ui2_A           17 MEYLIEWKDGHSPSWVPSSYIA-------------------ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDEN   76 (244)
T ss_dssp             EEEEEEESSCCCCEEEEGGGSC-------------------HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTT
T ss_pred             cHHHHHHHcCCCcccccccccc-------------------cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCC
Confidence            4677777777776533222111                   122356788999999999888777 556 9999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCC-CCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPD-KFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~-~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      |.||||+|+..|+.+++++|++.|+++ ..+ ..|.||||+|+..++.+    |++.|++++..|..|.||||+|+..+ 
T Consensus        77 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-  155 (244)
T 3ui2_A           77 GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-  155 (244)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-
Confidence            999999999999999999999999999 666 88999999999999887    56789999999999999999998521 


Q ss_pred             HHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        156 ADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                                     ....+.|||++|+..|+.+++++|..
T Consensus       156 ---------------~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          156 ---------------KTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ---------------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence                           23568999999999999998766643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=5.7e-24  Score=148.17  Aligned_cols=114  Identities=23%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-CCCCcHHHHHHHC
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-GDGATPLHFAASR  153 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-~~g~t~l~~a~~~  153 (207)
                      ..|.||||+|+..|+.++++.|++ +.++ ..+..|.||||+|+..++.+    +++.|++++..+ ..|+||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            467899999999999999999999 8888 88999999999999999887    567999999888 8899999999999


Q ss_pred             CCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        154 GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       154 ~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      |+.+++++|+++|+++ .++..|+||||+|++.++.+.+..+
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~  162 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP  162 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccH
Confidence            9999999999999999 6899999999999999888776653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=2.7e-23  Score=148.99  Aligned_cols=116  Identities=26%  Similarity=0.247  Sum_probs=102.5

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hhhc-CCCCCCCCCCCCcHHHHHHH
Q psy14140         79 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQ-GVDPNLKDGDGATPLHFAAS  152 (207)
Q Consensus        79 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~-~~~~~~~~~~g~t~l~~a~~  152 (207)
                      +..|.||||+|+..|+.+++++|++.|.++ .++..|.||||+|+..++.+    |++. |++++..|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            456889999999999999999999999888 88899999999999999887    4456 89999999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        153 RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       153 ~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .|+.+++++|+++|+++ .++..|+|||++|+..++.++++.+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l  192 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK  192 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHH
Confidence            99999999999999999 6889999999999998888875554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=152.08  Aligned_cols=132  Identities=17%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             chhhhhhhccCCchHH-HHhcCCCCCC------CCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCc-CCCCCCCcHHHH
Q psy14140         52 HGKLHGCTCRKGESTK-VRDQGVDPNL------KDGDGATPLHFAASR---GHADCVRWLLRYGGKL-VPDKFGKSPIND  120 (207)
Q Consensus        52 ~~~~~a~~~~~~~~~~-ll~~g~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~  120 (207)
                      .+++.|+..++...+. +++.|++++.      .+..|.||||+|+..   ++.+++++|++.|+++ .+|..|.||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            4566666666655443 6677777776      477777888887775   6777888888877777 777777888888


Q ss_pred             HHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCccCCCCCCCHHHHHHHcCCc
Q psy14140        121 AAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM  188 (207)
Q Consensus       121 a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~l~~a~~~~~~  188 (207)
                      |+..++.+    |++.|++++..|..|.|||++|+..++.+++++|+++|++     .|.||||+|+..|+.
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence            87777766    4567777777777788888888877888888877777665     467788877777653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.7e-23  Score=138.98  Aligned_cols=126  Identities=24%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             CCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcH
Q psy14140         40 GTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP  117 (207)
Q Consensus        40 g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~  117 (207)
                      |+++ ..+..+.+|++.|+..++..+.. |++.|++++.+|..|.||||+|+..++.+++++|++.|.++ .++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            5677 77889999999999999887776 78999999999999999999999999999999999999999 899999999


Q ss_pred             HHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q psy14140        118 INDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  166 (207)
Q Consensus       118 l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  166 (207)
                      ||+|+..++.+    +++.|++++..|..|.||+++|+..+..+++++|.+.+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            99999999887    56899999999999999999999888888877766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=7.7e-26  Score=173.63  Aligned_cols=147  Identities=10%  Similarity=-0.030  Sum_probs=71.3

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCC---CCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDP---NLK   78 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~---~~~   78 (207)
                      ||||+||.+|+.++|+.+++.+...             ...+..+..+.+|+++|+..++.+++. |++.|+++   +..
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~-------------~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~  160 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSD-------------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  160 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CC-------------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcH-------------HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC
Confidence            7899999999998766655554310             000111223334555555555555444 44555431   111


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-C--CCCCCCcHHHHHH-hcChHHHhhcCCCCCCCCCCCCcHHHHHHHCC
Q psy14140         79 DGDGATPLHFAASRGHADCVRWLLRYGGKL-V--PDKFGKSPINDAA-ENQQMEVRDQGVDPNLKDGDGATPLHFAASRG  154 (207)
Q Consensus        79 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~--~~~~g~~~l~~a~-~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~  154 (207)
                      +.. .||||+|+..|+.+++++|++.|+++ .  .+..|.||||+|+ ..|+.++++.-.+-.   ..|.|||+.|+..|
T Consensus       161 ~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g---a~~~taL~~Aa~~g  236 (376)
T 2aja_A          161 AEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP---VMLAYAEIHEFEYG  236 (376)
T ss_dssp             HHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH---HHHHHHHHCTTTTT
T ss_pred             CCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC---CccchHHHHHHHCC
Confidence            111 45555555555555555555555544 2  4444555555555 555555333221110   12445555555555


Q ss_pred             CHHHHHHHHHhC
Q psy14140        155 HADCVRWLLRYG  166 (207)
Q Consensus       155 ~~~~~~~Ll~~g  166 (207)
                      +.+++++|+++|
T Consensus       237 ~~evv~lL~~~g  248 (376)
T 2aja_A          237 EKYVNPFIARHV  248 (376)
T ss_dssp             TTTHHHHHHHHH
T ss_pred             CHHHHHHHHhcC
Confidence            555555555443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=8.5e-23  Score=133.17  Aligned_cols=110  Identities=22%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||+|+.+|+.++                +++|+++|++++..+..+.+|+++|+..++..+.. |++.|++++.+|..
T Consensus         9 ~~l~~A~~~~~~~~----------------v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~   72 (123)
T 3aaa_C            9 KEFMWALKNGDLDE----------------VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH   72 (123)
T ss_dssp             HHHHHHHHTTCHHH----------------HHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             hHHHHHHHcCCHHH----------------HHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Confidence            56777777777763                66666777777777777777777777766666555 55777777777777


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  128 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~  128 (207)
                      |.||||+|+..++.+++++|++.|+++ .++..|.||+++|...+..+
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            777777777777777777777777666 66666666666664443333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=3.8e-22  Score=149.20  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=106.4

Q ss_pred             cceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCc------hhhcccchhhhhhhc---cCCchHH-HHhcCC
Q psy14140          4 PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDY------HEEAKLHGKLHGCTC---RKGESTK-VRDQGV   73 (207)
Q Consensus         4 pl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~------~~~~~~~~~~~a~~~---~~~~~~~-ll~~g~   73 (207)
                      |||.|+.+|+.+.                ++.|++.|++++.      .+..+.+|++.|+..   ++..+.. |++.|+
T Consensus       154 ~L~~A~~~g~~~~----------------v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga  217 (301)
T 2b0o_E          154 RLWTAICNRDLLS----------------VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG  217 (301)
T ss_dssp             HHHHHHHTTCHHH----------------HHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred             HHhhhhhccCHHH----------------HHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence            4788888888874                7778889999987      688899999999887   4555554 779999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHH----hhcCCCCCCCCCCCCcHHH
Q psy14140         74 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQGVDPNLKDGDGATPLH  148 (207)
Q Consensus        74 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l----~~~~~~~~~~~~~g~t~l~  148 (207)
                      +++.+|..|.||||+|+..|+.+++++|++.|+++ .+|..|.|||++|+..++.++    ++.+.+      .|.||||
T Consensus       218 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh  291 (301)
T 2b0o_E          218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLH  291 (301)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhH
Confidence            99999999999999999999999999999999999 999999999999999999874    445543      6889999


Q ss_pred             HHHHCCCH
Q psy14140        149 FAASRGHA  156 (207)
Q Consensus       149 ~a~~~~~~  156 (207)
                      +|+..|+.
T Consensus       292 ~A~~~g~~  299 (301)
T 2b0o_E          292 VDYSWVIS  299 (301)
T ss_dssp             --------
T ss_pred             HHHhcCCc
Confidence            99988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=9e-22  Score=141.00  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=106.7

Q ss_pred             hhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHH
Q psy14140         46 HEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAA  122 (207)
Q Consensus        46 ~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~  122 (207)
                      .+..+.++++.|+..++..++. |++.|++++..|..|.||||+|+..|+.+++++|++. |.++ .++..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            3556788999999999988776 7899999999999999999999999999999999998 8888 89999999999999


Q ss_pred             hcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        123 ENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       123 ~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      ..++.+    |++.|++++..+..|.|||++|+..++.++++.|+..++..
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            999887    56789999999999999999999999999999999998877

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=2.3e-20  Score=115.60  Aligned_cols=82  Identities=46%  Similarity=0.779  Sum_probs=50.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      +|.||||+|+..++.+++++|++.|.++                            +..|..|.||||+|+..++.++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------n~~d~~g~t~L~~A~~~~~~~~v~   52 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV----------------------------NAKDKNGRTPLHLAARNGHLEVVK   52 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT----------------------------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC----------------------------cccCCCCCCHHHHHHHcCCHHHHH
Confidence            3788999999988999998888887655                            344445555555555555555555


Q ss_pred             HHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        161 WLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       161 ~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      +|+++|+++ .++..|+||||+|+..|+.++
T Consensus        53 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~   83 (93)
T 1n0q_A           53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEV   83 (93)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            555555555 345555555555555555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=4.4e-24  Score=163.89  Aligned_cols=155  Identities=13%  Similarity=0.059  Sum_probs=123.9

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDP---NLKDGDGATPLHFAASRGHADCVRWLLRYGG  106 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  106 (207)
                      ++++.++++|.+.       .+|++.|+..|+..++. |++.|+..   +..+..|.||||+|+..|+.+++++|++.|+
T Consensus        80 ~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga  152 (376)
T 2aja_A           80 QLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  152 (376)
T ss_dssp             THHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            4667777777643       48999999999988877 67888732   2344567899999999999999999999997


Q ss_pred             Cc----CCCCCCCcHHHHHHhcChHH----HhhcCCCCCC--CCCCCCcHHHHHH-HCCCHHHHHHHHHhCCCccCCCCC
Q psy14140        107 KL----VPDKFGKSPINDAAENQQME----VRDQGVDPNL--KDGDGATPLHFAA-SRGHADCVRWLLRYGGKLVPDKFG  175 (207)
Q Consensus       107 ~~----~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~g  175 (207)
                      +.    ..+.. .||||+|+..|+.+    |++.|++++.  .+..|.||||+|+ ..|+.+++++|++.|++      |
T Consensus       153 d~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------~  225 (376)
T 2aja_A          153 TEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------L  225 (376)
T ss_dssp             TTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------H
T ss_pred             CccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------c
Confidence            52    22222 89999999999988    5678888776  7788999999999 99999999999987642      8


Q ss_pred             CCHHHHHHHcCCcceeehHHHHHH
Q psy14140        176 KSPINDAAENQQMEVSTVSPVVRR  199 (207)
Q Consensus       176 ~t~l~~a~~~~~~~~~~~l~~~~~  199 (207)
                      .|||++|+.+|+.+++++|.....
T Consensus       226 ~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          226 AYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             HHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             chHHHHHHHCCCHHHHHHHHhcCc
Confidence            899999999999999887755443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=2.5e-20  Score=137.92  Aligned_cols=117  Identities=16%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCc-------CCCCCCCcHHHHHHhc---ChHH----HhhcCCCCCCCCCCCCcHHHH
Q psy14140         84 TPLHFAASRGHADCVRWLLRYGGKL-------VPDKFGKSPINDAAEN---QQME----VRDQGVDPNLKDGDGATPLHF  149 (207)
Q Consensus        84 t~l~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~g~~~l~~a~~~---~~~~----l~~~~~~~~~~~~~g~t~l~~  149 (207)
                      ++|+.|+..++.+.++.+++.|.++       ..+..|.||||+|+..   ++.+    |++.|++++..|..|+||||+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            4677777777777777777777764       2366677778777777   5554    456777888888888888888


Q ss_pred             HHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccC
Q psy14140        150 AASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       150 a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      |+..|+.+++++|+++|+++ .++..|+||||+|+..|+.++      ++.|++.|++
T Consensus       212 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~------v~~Ll~~ga~  263 (278)
T 1dcq_A          212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC------EELLTQALSG  263 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHH------HHHHHHcCCC
Confidence            88888888888888888888 577778888888888887776      4455555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=3.1e-20  Score=137.41  Aligned_cols=167  Identities=17%  Similarity=0.173  Sum_probs=125.5

Q ss_pred             CcceeehccCChhHHHHHhhccch---------hh---HHHHHH-HHHHcC--CCCCchhhcccchhhhhhhccCCchHH
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDR---------LM---LSNCLS-LLVQHG--TLPDYHEEAKLHGKLHGCTCRKGESTK   67 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~---------~~---~~~~v~-~ll~~g--~~~~~~~~~~~~~~~~a~~~~~~~~~~   67 (207)
                      ++++.+...|+....++.......         ..   ..+-++ ..+.+.  ...+........+++.|+..++.....
T Consensus        68 ~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~  147 (278)
T 1dcq_A           68 SELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLL  147 (278)
T ss_dssp             GGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHH
Confidence            567778888887666554322110         01   111122 112222  122233334456677777777655544


Q ss_pred             -HHhcCCCC------CCCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----Hhhc
Q psy14140         68 -VRDQGVDP------NLKDGDGATPLHFAASR---GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQ  132 (207)
Q Consensus        68 -ll~~g~~~------~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~  132 (207)
                       +++.|+++      +..+..|.||||+|+..   ++.+++++|++.|+++ .+|..|.||||+|+..|+.+    |++.
T Consensus       148 ~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  227 (278)
T 1dcq_A          148 QAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG  227 (278)
T ss_dssp             HHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             78899984      45588999999999998   8999999999999999 89999999999999999987    5689


Q ss_pred             CCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        133 GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       133 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      |++++..|..|.||||+|+..|+.+++++|+++|++.
T Consensus       228 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          228 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999998765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=3.2e-20  Score=142.01  Aligned_cols=136  Identities=20%  Similarity=0.204  Sum_probs=99.3

Q ss_pred             ccchhhhhhhc-cCCchHH-HHhcCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhc
Q psy14140         50 KLHGKLHGCTC-RKGESTK-VRDQGVDPNLKD--GDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN  124 (207)
Q Consensus        50 ~~~~~~~a~~~-~~~~~~~-ll~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~  124 (207)
                      +.++++.|+.. ++..++. |++.|++++..+  ..|.||||+|+..++.+++++|++.|+++ ..|..|.||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34567777776 6655554 778999999888  78899999999999999999999999888 8888999999999988


Q ss_pred             ChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc----cCCCCCCCHHHHHHHc
Q psy14140        125 QQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL----VPDKFGKSPINDAAEN  185 (207)
Q Consensus       125 ~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~----~~~~~g~t~l~~a~~~  185 (207)
                      ++.+    |++.|++++..|..|.||||+|+..++.+++++|+..+...    ..+..+.|+++.+...
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            8877    56789999999999999999999999999999998776443    2445577777766554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.8e-20  Score=143.43  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=107.7

Q ss_pred             CCCCHHHHHHHc-CCHHHHHHHHHhCCCc-CCC--CCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHH
Q psy14140         81 DGATPLHFAASR-GHADCVRWLLRYGGKL-VPD--KFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAAS  152 (207)
Q Consensus        81 ~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~-~~~--~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~  152 (207)
                      .+.++||.|+.. ++.++++.|++.|+++ ..+  ..|.||||+|+..++.+    |++.|++++..|..|+||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            455799999999 9999999999999999 666  89999999999999887    568999999999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHH
Q psy14140        153 RGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVV  197 (207)
Q Consensus       153 ~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~  197 (207)
                      .|+.+++++|+++|+++ ..+..|.||||+|+..++.+++++|...
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999 6899999999999999999998777544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=2.5e-20  Score=119.91  Aligned_cols=103  Identities=35%  Similarity=0.481  Sum_probs=91.0

Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHH
Q psy14140         77 LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAA  151 (207)
Q Consensus        77 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~  151 (207)
                      .+|..|.||||+|+..++.+++++|++.|.++ ..+..|.||||+|+..++.+    |++.|++++..|..|.|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            56788999999999999999999999999888 88899999999999998877    55789999999999999999999


Q ss_pred             HCCCHHHHHHHHHhCCCc-cCCCCCCCHH
Q psy14140        152 SRGHADCVRWLLRYGGKL-VPDKFGKSPI  179 (207)
Q Consensus       152 ~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l  179 (207)
                      ..++.+++++|+++|+++ .++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999 5777787774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=7.8e-20  Score=113.18  Aligned_cols=48  Identities=46%  Similarity=0.762  Sum_probs=30.7

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        143 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       143 g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      |+||||+|+..|+.+++++|++.|+++ .++..|+||||+|+..++.++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~   50 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV   50 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence            566666666666666666666666666 456666666666666666655

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=3.3e-19  Score=114.62  Aligned_cols=99  Identities=22%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||+|+.+|+.++                +++|+++|++++..+..+.+|++.|+..++..+.. |++.|++++.+|..
T Consensus        11 t~L~~A~~~~~~~~----------------~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~   74 (115)
T 2l6b_A           11 TPLHNAAKNGHAEE----------------VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD   74 (115)
T ss_dssp             CHHHHHHHHTCHHH----------------HHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTT
T ss_pred             CHHHHHHHcCCHHH----------------HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC
Confidence            56666666666553                55555555666665656666666665555555444 44556666666666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP  117 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~  117 (207)
                      |.||||+|+..++.+++++|++.|+++ .++..|.+|
T Consensus        75 g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           75 GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            666666666666666666666666555 444444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=2.9e-18  Score=109.40  Aligned_cols=91  Identities=35%  Similarity=0.532  Sum_probs=73.5

Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         76 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        76 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      ...|..|.|+||+|+..|+.+++++|++.|.                            +++..|..|.||||+|+..|+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----------------------------~i~~~d~~g~tpLh~A~~~~~   69 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGA----------------------------DVAAKDKNGSTPLHLAARNGH   69 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTC----------------------------CTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCC----------------------------CCCccCCCCCCHHHHHHHcCC
Confidence            3456788889999999999999988888765                            456667788888888898999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .+++++|+++|+++ .++..|+||||+|+..|+.+++++|
T Consensus        70 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999888 6888899999999999988886654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=1.5e-16  Score=101.33  Aligned_cols=88  Identities=27%  Similarity=0.468  Sum_probs=70.9

Q ss_pred             CchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHH
Q psy14140         44 DYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA  121 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a  121 (207)
                      ...+..+.++++.|+..++..+.. |++.|++++.+|..|.||||+|+..++.+++++|++.|+++ .++..|.||+|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            344566778888888888877666 67888888888888999999999999999999999988888 8888899999999


Q ss_pred             HhcChHHHhh
Q psy14140        122 AENQQMEVRD  131 (207)
Q Consensus       122 ~~~~~~~l~~  131 (207)
                      +..++.++++
T Consensus        98 ~~~~~~~~~~  107 (110)
T 2zgd_A           98 IDNGNEDLAE  107 (110)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            9888877553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 5e-20
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 75  PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVR-- 130
                  GAT L  AA +GH + ++ LL   G  V   D  G++ +  A  +        
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 131 ------DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDA 182
                 D G D N++   G TPL  A  + H   V+ LL      +   D  GK+ +  A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 183 AENQQMEV 190
            E +  ++
Sbjct: 261 VELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-17
 Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 27/97 (27%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
           D G D N++   G TPL  A  + H   V+ LL                           
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH----------------------- 243

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
               ++ N  D DG T L  A           L + G
Sbjct: 244 ----IEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 52/194 (26%)

Query: 60  CRKGESTKVR---DQGVDPNLKDGD-GATPLHFAASRGHADCVRWLLRYGGKL------- 108
            +  +   V+   + G + N ++ + G TPLH A      D V  LLR+G          
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72

Query: 109 ---------------------------VPDKFGKSPINDAAENQQMEVRDQGVD------ 135
                                        D +G +   +AA   +++             
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 136 --------PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQ 187
                          GAT L  AA +GH + ++ LL   G  V                 
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 188 MEVSTVSPVVRRLL 201
            + S V  +   LL
Sbjct: 193 SDDSDVEAITHLLL 206

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 29/86 (33%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +    L  A      D V+ LL                            + G + N ++
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL----------------------------EGGANVNFQE 35

Query: 141 GD-GATPLHFAASRGHADCVRWLLRY 165
            + G TPLH A      D V  LLR+
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRH 61

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-18
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 29/108 (26%)

Query: 84  TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
           TPLH A+  GH   V+ LL                             +G  PN+ +   
Sbjct: 2   TPLHVASFMGHLPIVKNLL----------------------------QRGASPNVSNVKV 33

Query: 144 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
            TPLH AA  GH +  ++LL+   K+    K  ++P++ AA      +
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM 81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 2e-17
 Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 32/114 (28%)

Query: 55  LHGCTCRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 111
           LH      G    V+    +G  PN+ +    TPLH AA  GH +  ++LL         
Sbjct: 4   LH-VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL--------- 53

Query: 112 KFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
                                    N K  D  TPLH AA  GH + V+ LL  
Sbjct: 54  -------------------QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 4e-17
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 75  PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSP-INDAAENQQMEVRD- 131
            NL +  G TPLH  A  GH      L+++G  +    + G +P    +       V+  
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 132 --QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM 188
                D N K   G +PLH AA +GH D V  LL+ G         G +P+  A     +
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 376

Query: 189 EV 190
            V
Sbjct: 377 SV 378

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-15
 Identities = 36/152 (23%), Positives = 47/152 (30%), Gaps = 33/152 (21%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFA 89
               +L++HG + D                   +  K +     D N K   G +PLH A
Sbjct: 278 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 337

Query: 90  ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHF 149
           A +GH D V  LL+ G                              PN    DG TPL  
Sbjct: 338 AQQGHTDIVTLLLKNG----------------------------ASPNEVSSDGTTPLAI 369

Query: 150 AASRGHADCVRWLLRYGGK----LVPDKFGKS 177
           A   G+      L     +    LV DK   S
Sbjct: 370 AKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 5e-15
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           ++   PN    +G TPLH A    + D V+ LL  GG    P   G +P++ AA+  Q+E
Sbjct: 153 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

Query: 129 VR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
           V       G   N +   G TPLH AA  GHA+ V  LL       + +K G +P++  A
Sbjct: 213 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 272

Query: 184 ENQQMEV 190
           +   + V
Sbjct: 273 QEGHVPV 279

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 4e-16
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAEN----Q 125
           +G   N  + +G TPLH+AAS+   +    LL  G      D +  + ++ AA       
Sbjct: 92  KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 151

Query: 126 QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE 184
              +       N++D +G TPLH A      +  + L+  G  + + +K  K+P+  A  
Sbjct: 152 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG 211

Query: 185 NQQMEVSTVSPVVRRLL 201
              +       +++R++
Sbjct: 212 GLGL-------ILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 2e-14
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME 128
           + G +P+ KD   AT +H AA++G+   +  LL Y     + D  G +P++ A + +++E
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
                  QG    +++ +  TPL  A   G    ++ ++
Sbjct: 184 EAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 68  VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQM 127
           +          D D  T LH+A S GH + V +LL+ G  +             A +   
Sbjct: 23  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR 82

Query: 128 EVR-----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI 179
           +        +G   N  + +G TPLH+AAS+   +    LL  G      D +  + +
Sbjct: 83  DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 140

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.3 bits (173), Expect = 1e-15
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG--KLVPDKFGKSPINDAAENQQME 128
                + +   G T LH+AA   +   V++L+   G  K   D+ GK+PI  AA+  ++E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 129 V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
           V      QG      D    T    A +  H + V    R 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 7e-11
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 6/193 (3%)

Query: 4   PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG 63
           PL +  ++   +  +     G    + N       H    +      ++           
Sbjct: 77  PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 136

Query: 64  ESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAE 123
           E            +   +G   +  A                 K      G++ ++ AA+
Sbjct: 137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 196

Query: 124 NQ-----QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKS 177
                  +  V ++G + + +D DG TP+  AA  G  + V +L++ G  +   D    +
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 256

Query: 178 PINDAAENQQMEV 190
               A  N    +
Sbjct: 257 ARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 7e-09
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 21/92 (22%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
            + V+         T LH+ AS   A+    L+ +  K                    E 
Sbjct: 22  RESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK--------------------EC 60

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRW 161
              G D N  D D  TPL  A        V +
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAY 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 8/35 (22%), Positives = 10/35 (28%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 104
            QG      D    T    A +  H + V    R 
Sbjct: 242 QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 9e-07
 Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 39/116 (33%)

Query: 84  TPLHFA-ASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGD 142
           +P+     + G       + R    ++  +                              
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPR-----------------------------H 32

Query: 143 GATPLHFAASRGHADCVRWLLRYGGKLV---------PDKFGKSPINDAAENQQME 189
             T LH+ AS   A+    L+ +  K            D    +P+  A   ++  
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 33/131 (25%)

Query: 26  RLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKV-----RDQGVDPNLKDG 80
           +  L   +  +V+    P      +   K +     + +S               N +D 
Sbjct: 198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           +G T L+ AA  G+   V  LL                            D G DP + +
Sbjct: 258 NGDTCLNIAARLGNISIVDALL----------------------------DYGADPFIAN 289

Query: 141 GDGATPLHFAA 151
             G  P+ F A
Sbjct: 290 KSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 5e-14
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 27/180 (15%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVD-----PNLKDGDGATP 85
             +  LV+HG+   Y +       +          +   +  +D       L+D    T 
Sbjct: 121 ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 180

Query: 86  LHFAASRGH------------ADCVRWLLRYGGKLVP--DKFGKSPINDAAENQQMEV-- 129
           LH                      + W+++   + +       +S  ND    ++  +  
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 130 -----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA 183
                       N +D +G T L+ AA  G+   V  LL YG    + +K G  P++  A
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 6e-10
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 72  GVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDA-------- 121
            ++ N+  D  G TPLH+  S  + + V+ L+++G      D  G+S +  A        
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 122 AENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY 165
           +   +  +        L+D    T LH               +Y
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 199

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 12/149 (8%)

Query: 65  STKVRDQGVDPNLKDGDGATPLHFAASR----GHADCVRWLLRYGGKLVPDKF--GKSPI 118
             K+      P + D +    L     R       +    L         +     +   
Sbjct: 18  PLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 77

Query: 119 NDAAENQQMEVRDQ----GVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPD 172
           + + ++   EV D      ++ N+  D  G TPLH+  S  + + V+ L+++G      D
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 173 KFGKSPINDAAENQQMEVSTVSPVVRRLL 201
             G+S +  A ++     S     +   L
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYL 166

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 6e-14
 Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 16/132 (12%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV---PDKFGKSPINDAAENQQ 126
                  +   +       AA  GH   +  L       +              AAEN  
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 127 MEVR----DQGVDPN---LKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPI 179
           + V     +         ++  +       A  RGH + + +LL     L          
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML------AYAE 227

Query: 180 NDAAENQQMEVS 191
               E  +  V+
Sbjct: 228 IHEFEYGEKYVN 239

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 23/138 (16%), Positives = 32/138 (23%), Gaps = 12/138 (8%)

Query: 74  DPNLKDGDGATPLHFAASRGHAD---CVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 129
           D + K          AA  G +     +  LL     + V           AAEN  + V
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 141

Query: 130 ----RDQGVDPNLKDGD--GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAA 183
                +      +             AA  GH   +  L                 N  A
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT--EATAMIQAENYYA 199

Query: 184 ENQQMEVSTVSPVVRRLL 201
                       V+  LL
Sbjct: 200 FRWAAVGRGHHNVINFLL 217

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.3 bits (158), Expect = 3e-13
 Identities = 20/182 (10%), Positives = 39/182 (21%), Gaps = 22/182 (12%)

Query: 32  CLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDG-DGATPLHFAA 90
            L+ L +             +               V    ++  L      A       
Sbjct: 176 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV----INFLLDCPVMLAYAEIHEF 231

Query: 91  SRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFA 150
             G      ++ R+  +    K        +  +   ++  +     L+       L   
Sbjct: 232 EYGEKYVNPFIARHVNR---LKEMHDAFKLSNPDGVFDLVTK--SECLQGFYMLRNLIRR 286

Query: 151 ASRGHADCVRWLLRYGG------KLVPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQ 204
                 D +R+LL   G                 +  A                 LL+I 
Sbjct: 287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG------ACALLLSIP 340

Query: 205 KV 206
            V
Sbjct: 341 SV 342

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.5 bits (150), Expect = 9e-13
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 56  HGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFG 114
                 +G    +     D N  D  G T LH+AA+  + + V  LL +       D   
Sbjct: 97  AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD 156

Query: 115 KSPINDAAENQQMEVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
           ++P+  AA     E      D   +  + D     P   A+ R H D VR L
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 32/195 (16%), Positives = 46/195 (23%), Gaps = 74/195 (37%)

Query: 70  DQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDA------- 121
            QG + N   D  G T LH AA    AD  + LL  G               A       
Sbjct: 10  AQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAM 69

Query: 122 --------------------------------AENQQMEVRDQGVDPNLKDGDGATPLHF 149
                                            E    ++     D N  D  G T LH+
Sbjct: 70  GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHW 129

Query: 150 AASRG---------------------------------HADCVRWLLRYGGKL-VPDKFG 175
           AA+                                     +  + LL       + D   
Sbjct: 130 AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 189

Query: 176 KSPINDAAENQQMEV 190
           + P + A+E    ++
Sbjct: 190 RLPRDVASERLHHDI 204

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.4 bits (150), Expect = 2e-12
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 39/155 (25%)

Query: 52  HGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 111
             K       +     +    ++       G T LH AA++G+ + ++ L          
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL---------- 218

Query: 112 KFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V 170
                                  D N+KD DG TPLH AA  G  +  R L+     +  
Sbjct: 219 ------------------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260

Query: 171 PDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQK 205
            +K G++  + A E+          ++  L  +QK
Sbjct: 261 VNKVGQTAFDVADED----------ILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 28/81 (34%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           D       A S G  + V  LL                            ++G D N  +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLL----------------------------ERGADINYAN 70

Query: 141 GDGATPLHFAASRGHADCVRW 161
            DG T LH A    + D V++
Sbjct: 71  VDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 8/148 (5%)

Query: 60  CRKGESTKVR---DQGVDPNLKDGDGATPLHFAASRGHAD-----CVRWLLRYGGKLVPD 111
           C  G++ +V    ++G D N  + DG T LH A    + D                    
Sbjct: 48  CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107

Query: 112 KFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP 171
               +  +    +    +  QG      + +G TPL  A      + ++  +   G  + 
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167

Query: 172 DKFGKSPINDAAENQQMEVSTVSPVVRR 199
               +       + +Q   S     VR 
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRH 195

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 5e-12
 Identities = 21/124 (16%), Positives = 31/124 (25%), Gaps = 17/124 (13%)

Query: 60  CRKGESTKVR---DQGVDPNLK------DGDGATPLHFAA---SRGHADCVRWLLRYGGK 107
            +  +   +      GVD   K           T LH A     R     V +L++  G 
Sbjct: 14  VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 73

Query: 108 LVP-----DKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWL 162
           L                         +        + +  G TPL  A    H  C   L
Sbjct: 74  LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 133

Query: 163 LRYG 166
            +  
Sbjct: 134 TQAL 137

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP--DKFGKSPINDAAENQQM 127
           D  +    ++ DG TPLH A     A+ VR L   G  L       G++P++ A E Q  
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 128 EV----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
            V       G DP  +   G TPL  A  R +    R L  +G     D
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 78  KDGDGATPLHFAASRGHADCVRWLLRYGGKL----VPDKFGKSPINDAAEN----QQMEV 129
              DG T LH A    H   + +LL +        + +  G++ ++ AA         ++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPD 172
              G    + +  G T LH A       C   LL+       D
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 55  LHGCTCRKGESTKVR---DQGVDP---NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL 108
           LH           +             +L++  G T LH AA  G A  V  L   G  +
Sbjct: 13  LH-LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 109 VPDKFGKSPINDAAENQQME 128
           +  + G       A   +  
Sbjct: 72  LVAERGGHTALHLACRVRAH 91

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-10
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 28/91 (30%)

Query: 70  DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEV 129
             G + N +   G++ LH A+ RG    VR L+                           
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLV--------------------------- 197

Query: 130 RDQGVDPNLKDGDGATPLHFAASRGHADCVR 160
              G D +LK+    TPL  A SR   D +R
Sbjct: 198 -RSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-09
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 24/81 (29%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           DG TPLH A  +G+   V  L+                           +  G + ++ +
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLF------------------------QQGGRELDIYN 37

Query: 141 GDGATPLHFAASRGHADCVRW 161
               TPLH A        VR 
Sbjct: 38  NLRQTPLHLAVITTLPSVVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-07
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKS--PINDAAENQQMEVR----DQGV 134
           DG T LH A +    + V+ LL  G  +          P+  A EN  + +       G 
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168

Query: 135 DPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV 190
           + N +   G++ LH A+ RG    VR L+R G    + +    +P+  A   + +++
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-06
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-----VPDKFGKSPINDAAENQQM 188
           DG TPLH A  +G+   V  L+    +      + +   ++P++ A      
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 3e-10
 Identities = 17/83 (20%), Positives = 22/83 (26%), Gaps = 27/83 (32%)

Query: 84  TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDG 143
            PLH A        V+ LL                                    KD DG
Sbjct: 2   YPLHQACMENEFFKVQELLHSKP---------------------------SLLLQKDQDG 34

Query: 144 ATPLHFAASRGHADCVRWLLRYG 166
             PLH++ S    +   +LL   
Sbjct: 35  RIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 71  QGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQME 128
            G    +KD     PLH AAS G    +  L   G   V   DK G +P+  A      +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 129 V-----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYG 166
                    G + +L D  GA     A    +    ++ L   
Sbjct: 187 AAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 5e-07
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 145 TPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQM 188
            PLH A        V+ LL     L+   D+ G+ P++ +   Q  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 35/185 (18%), Positives = 50/185 (27%), Gaps = 50/185 (27%)

Query: 55  LHGCTCRKGESTKVR----DQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP 110
           LH   C + E  KV+     +      KD DG  PLH++ S    +   +LL     +  
Sbjct: 4   LH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 111 DKFGKSPINDAAENQQMEVRDQ-------------------------------------- 132
           D +                  +                                      
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 133 -----GVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAEN 185
                G    +KD     PLH AAS G    +  L   G   V   DK G +P+  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 186 QQMEV 190
              + 
Sbjct: 183 GHGDA 187

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 18/194 (9%)

Query: 4   PLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKG 63
           PL         + +S   S  + + L +           PD       H           
Sbjct: 37  PLHWSVSFQAHEITSFLLSKMENVNLDDY----------PDDSGWTPFHIACSVGNLEVV 86

Query: 64  ESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVP-DKFGKSPINDAA 122
           +S   R    D N     G T LH A  +   +  ++L+  G  +   DKF + P++ AA
Sbjct: 87  KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA 146

Query: 123 ENQQMEVRDQGVD-----PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLV--PDKFG 175
               +++ +          N +D  G TPL  A + GH D    L+   G      D  G
Sbjct: 147 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 176 KSPINDAAENQQME 189
               + A   Q  +
Sbjct: 207 AKAEDVALNEQVKK 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 12/81 (14%), Positives = 18/81 (22%), Gaps = 24/81 (29%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKD 140
           DG + LH A           ++R                                 N ++
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVK------------------------GDLAFLNFQN 36

Query: 141 GDGATPLHFAASRGHADCVRW 161
               TPLH A      +    
Sbjct: 37  NLQQTPLHLAVITNQPEIAEA 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 85  PLHFAASRGHADCVRWLLRYGGKLVPDKF--GKSPINDAAENQQME----VRDQGVDPNL 138
            LH A+  G+   V  L+  G  +   +   G++ ++ A + Q  +    +   G D N 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 139 KDGDGATPLHFAASRGHADCVRWLLRYG 166
               G +P      R      + L +  
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-07
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 16  CSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDP 75
           C   A   G   ++   +SL          +    LH  L          + +   G D 
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH--LAVDLQNPDLVSLLLKCGADV 171

Query: 76  NLKDGDGATPLHFAASRGHADCVRWLLRYG 105
           N     G +P      R      + L +  
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 3e-05
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 142 DGATPLHFAASRGHADCVRWLLRYGGKL-----VPDKFGKSPINDAAENQQM 188
           DG + LH A           ++R            +   ++P++ A    Q 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-08
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 38/120 (31%)

Query: 82  GATPLHFAASRGHADCVRWLLRYG------------------------------------ 105
            A  L  AA+RG  + VR LL  G                                    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 106 --GKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
                   +       +   +  + +   G   +++D  G  P+  A   GH D  R+L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 75  PNLKDGDGATPLHFAASRGHADCVRWLL 102
            +++D  G  P+  A   GH D  R+L 
Sbjct: 95  LDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 41/127 (32%)

Query: 84  TPLHFAASRGHADCVRWLLRYGGKL----------------------------------V 109
             L  ++  G  D V+ ++                                         
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 110 PDKFGKSPINDAAENQQMEVR----DQGVDPNLK---DGDGATPLHFAASRGHADCVRWL 162
            D  G +P++ AA    ++V     + G         D   A         G+  C ++L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 163 LRYGGKL 169
                K+
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 3/42 (7%)

Query: 70  DQGVDPNLK---DGDGATPLHFAASRGHADCVRWLLRYGGKL 108
           + G         D   A         G+  C ++L     K+
Sbjct: 88  ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 5e-07
 Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 38/148 (25%)

Query: 81  DGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQ--------------- 125
           D    L  AA  G  D VR L+  G     D  G SP++ AA+                 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 126 ----------------------QMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
                                    +   G D N KD    T LH+A    H + V  L+
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 164 RYGGKL-VPDKFGKSPINDAAENQQMEV 190
           +YG  +    KF K+  + + +N   ++
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDL 148

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (98), Expect = 6e-06
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAA 90
           + + +L+ +G              L         +  +   GV  + +     TPLH AA
Sbjct: 16  DEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75

Query: 91  SRGHADCVRWLLRYGGKLVPDKF-GKSPINDAAENQQMEV----RDQGVDPNLKDGDGAT 145
           S GHA+ V  LL++G  +        + ++ A E+   EV       G D + +     T
Sbjct: 76  SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135

Query: 146 PLHFAASRGHADCVRWL 162
               +   G+ D    L
Sbjct: 136 AFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 24  GDRLM-------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPN 76
           GDRL        +     LL +    PD                    + ++  QG  PN
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 77  LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVRDQGV- 134
           ++D  G +P+H AA  G  D ++ L+ +G  + VPD  G  PI+ A +     V      
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 135 --DPNLKDGDGATPLHFAASRGHADCVRWLL 163
             D + +D  G TPL  A  RG  D V  L 
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 38/147 (25%)

Query: 82  GATPLHFAASRGHADCVRWLLRYGGKLV--PDKFGKSPINDAAENQQMEVRDQ------- 132
               L  AA+RG    VR LL          ++FGK+ +            +        
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 133 -----------------------------GVDPNLKDGDGATPLHFAASRGHADCVRWLL 163
                                        G D N+ DG GA P+H A   GH   V +L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 164 RYGGKLVPDKFGKSPINDAAENQQMEV 190
                   D  G +P+  A +    ++
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDL 148

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-06
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 6/142 (4%)

Query: 31  NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAA 90
             L+ L+Q+    +                    + ++  +G +P+LKD  G   +H AA
Sbjct: 15  EQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAA 74

Query: 91  SRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDP------NLKDGDGA 144
             G  D ++ LL +   +  +    +     A  +      + +          ++  G 
Sbjct: 75  RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 134

Query: 145 TPLHFAASRGHADCVRWLLRYG 166
           T    A   G  + V  +   G
Sbjct: 135 TACDLARLYGRNEVVSLMQANG 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.79

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=201.41  Aligned_cols=159  Identities=23%  Similarity=0.373  Sum_probs=144.8

Q ss_pred             HHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-
Q psy14140         31 NCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-  108 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-  108 (207)
                      ++++++++.+.........+.+++..++..++.++.. |++.|++++.+|..|.||||+|+..++.+++++|++.|.++ 
T Consensus        51 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~  130 (223)
T d1uoha_          51 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD  130 (223)
T ss_dssp             HHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC
Confidence            5688888888888888888888888888888877766 77999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        109 VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       109 ~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      .++.+|.||+|+++..+...    +...+.+++..|..|+||||.|+..|+.+++++|++.|+++ .+|.+|+||||+| 
T Consensus       131 ~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-  209 (223)
T d1uoha_         131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-  209 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-
T ss_pred             CcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-
Confidence            88999999999999999876    56789999999999999999999999999999999999999 6999999999998 


Q ss_pred             HcCCcce
Q psy14140        184 ENQQMEV  190 (207)
Q Consensus       184 ~~~~~~~  190 (207)
                      +.|+.++
T Consensus       210 ~~~~~~i  216 (223)
T d1uoha_         210 KGGLGLI  216 (223)
T ss_dssp             CTTHHHH
T ss_pred             HCCCHHH
Confidence            4677776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-34  Score=206.01  Aligned_cols=183  Identities=20%  Similarity=0.244  Sum_probs=158.1

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCC---CCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTL---PDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL   77 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~---~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~   77 (207)
                      .||||+||.+|+.++                +++|+++|++   +|.++..|.||+++|+..++.++.. |++.|++++.
T Consensus        10 ~t~Lh~A~~~~~~~~----------------v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~   73 (255)
T d1oy3d_          10 DTALHLAVIHQHEPF----------------LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV   73 (255)
T ss_dssp             CCHHHHHHHTTCHHH----------------HHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CCHHHHHHHcCCHHH----------------HHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc
Confidence            599999999999985                6777777776   5667788899999999999988877 7899999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc------------------------------------------------C
Q psy14140         78 KDGDGATPLHFAASRGHADCVRWLLRYGGKL------------------------------------------------V  109 (207)
Q Consensus        78 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~------------------------------------------------~  109 (207)
                      +|..|.||||+|+..++.+++++|++.+...                                                .
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  153 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccc
Confidence            9999999999999999999999987543211                                                2


Q ss_pred             CCCCCCcHHHHHHhcChHH----HhhcCCCCCCC-CCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        110 PDKFGKSPINDAAENQQME----VRDQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      ++..|.||||+|+..++.+    +++.+.+.+.. +..|.||||+|++.++.+++++|+++|+++ .++..|+||||+|+
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            4567899999999999887    45677777754 568999999999999999999999999999 68999999999999


Q ss_pred             HcCCcceeehHHHHHHHhhcccC
Q psy14140        184 ENQQMEVSTVSPVVRRLLTIQKV  206 (207)
Q Consensus       184 ~~~~~~~~~~l~~~~~ll~~~~~  206 (207)
                      ..++.++      ++.|++.|+.
T Consensus       234 ~~~~~~i------~~~Ll~~Ga~  250 (255)
T d1oy3d_         234 LRPNPIL------ARLLRAHGAP  250 (255)
T ss_dssp             TSSCHHH------HHHHHHTTCC
T ss_pred             HCCCHHH------HHHHHHcCCC
Confidence            9999998      7888888873

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.9e-33  Score=204.45  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=160.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+||.+|+.++|+.|+.+.        .+.++++|+++|..+..|.+|+++|+..++.+++. |+++|++++.+|.
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~--------~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~  105 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHE--------AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK  105 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHH--------HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcc--------hhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccc
Confidence            49999999999999988777544        45788899999999999999999999999988877 7899999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCC---Cc---------------------------------------------CCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGG---KL---------------------------------------------VPDK  112 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~---~~---------------------------------------------~~~~  112 (207)
                      .|.||+++|...++.+++.++...+.   .+                                             ..+.
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  185 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccccc
Confidence            99999999999999888887753310   00                                             1234


Q ss_pred             CCCcHHHHHHhcChHH-----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        113 FGKSPINDAAENQQME-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       113 ~g~~~l~~a~~~~~~~-----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      .|.||||+++..++.+     +...+.+.+..|..|.||||+|+..|+.+++++|+++|+++ .+|..|+||||+|+++|
T Consensus       186 ~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            5778899888888765     34678888889999999999999999999999999999999 68999999999999999


Q ss_pred             CcceeehHHH
Q psy14140        187 QMEVSTVSPV  196 (207)
Q Consensus       187 ~~~~~~~l~~  196 (207)
                      +.+++++|..
T Consensus       266 ~~~iv~lL~~  275 (277)
T d2fo1e1         266 HHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            9999777654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-32  Score=193.15  Aligned_cols=181  Identities=19%  Similarity=0.238  Sum_probs=155.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      -||||+|+..|+.+++..            +++.+..+|+++|.++..|.||+++|+..++..+.. |++.|++++..|.
T Consensus         3 ~t~Lh~A~~~g~~~~~~~------------li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~   70 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTME------------VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF   70 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSC------------CCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT
T ss_pred             ChHHHHHHHcCCHHHHHH------------HHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccc
Confidence            489999999999887553            466677789999999999999999999999988877 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-------CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCC-CCCCcHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-------VPDKFGKSPINDAAENQQME----VRDQGVDPNLKD-GDGATPLH  148 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~-~~g~t~l~  148 (207)
                      .|.|||++++..++.++++.|++.+...       .....|.||+|.|+..+..+    ++..+..++..+ ..|.||||
T Consensus        71 ~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~  150 (221)
T d1iknd_          71 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH  150 (221)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccc
Confidence            9999999999999999999999876543       45566899999999999877    456787877665 57999999


Q ss_pred             HHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        149 FAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       149 ~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .|++.|+.+++++|+++|+++ .++..|+||||+|++.++.+++++|
T Consensus       151 ~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         151 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             cccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999 6999999999999999999985544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-30  Score=182.42  Aligned_cols=184  Identities=26%  Similarity=0.374  Sum_probs=166.6

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      +.|+.+|.+|+++.               +.+++.+++..++..|..|.+|+++|+..++.++.. +++.+.+....+..
T Consensus         5 ~~~~~~a~~G~~~~---------------v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~   69 (223)
T d1uoha_           5 LMVCNLAYSGKLEE---------------LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA   69 (223)
T ss_dssp             SHHHHHHHTTCHHH---------------HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT
T ss_pred             HHHHHHHHhCCHHH---------------HHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc
Confidence            56777899999985               445556677888999999999999999999988887 66888888888899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHA  156 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~  156 (207)
                      +.++++.++..++.+++++|++.+.++ ..+..|.||||+|+..++.+    +++.|++++..+..|.||||.++..++.
T Consensus        70 ~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          70 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCc
Confidence            999999999999999999999999998 89999999999999999887    5689999999999999999999999999


Q ss_pred             HHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        157 DCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       157 ~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      +++++|.+.+.++ .++..|+||||+|+..|+.++      ++.||+.|++|
T Consensus       150 ~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~------v~~LL~~Gad~  195 (223)
T d1uoha_         150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE------AKLLVSQGASI  195 (223)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH------HHHHHHTTCCS
T ss_pred             chhhhhccccceeeeccCCCCceeccccccCcHHH------HHHHHHCCCCC
Confidence            9999999999999 689999999999999999887      77788888875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.7e-29  Score=185.22  Aligned_cols=172  Identities=24%  Similarity=0.366  Sum_probs=119.9

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      |||+.||..|++++                |++|+++|+++|..+..|.+|+++|+..++.++.. |++.|.+.+..+..
T Consensus        42 t~l~~A~~~G~~~~----------------v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~  105 (291)
T d1s70b_          42 AVFLAACSSGDTEE----------------VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE  105 (291)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hHHHHHHHcCCHHH----------------HHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccc
Confidence            68999999999985                77888899999999999999999998888877776 77888888888888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHH-------------------------------
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV-------------------------------  129 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l-------------------------------  129 (207)
                      +.+||++++..++.++++.|++.+... ..+..+.+++++|+..+..+.                               
T Consensus       106 ~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (291)
T d1s70b_         106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL  185 (291)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhh
Confidence            999999999999999999998887766 666666666666554443221                               


Q ss_pred             hhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        130 RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       130 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      ..........+..|.|||+.|+..|+.+++++|++.|+++ .++..|+||||+|+..|+.++
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~i  247 (291)
T d1s70b_         186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA  247 (291)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHH
Confidence            0112222333445555555555555555555555555555 345555555555555555554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-29  Score=190.32  Aligned_cols=194  Identities=23%  Similarity=0.296  Sum_probs=168.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCch
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGES   65 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~   65 (207)
                      +|||+|+.+|+.++++.++..+....                 ..+..+.++..+......+..+.+|++.|+..+...+
T Consensus       167 ~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  246 (408)
T d1n11a_         167 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM  246 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH
Confidence            68888888888888888887654311                 1366777788887777777778888888887777666


Q ss_pred             HH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCC
Q psy14140         66 TK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLK  139 (207)
Q Consensus        66 ~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~  139 (207)
                      .. +...+...+..+..|.||++.+++.++.+++++|++.|.++ ..+..+.|||+.++..+...    +++.|++++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~  326 (408)
T d1n11a_         247 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK  326 (408)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC
T ss_pred             hhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccccc
Confidence            65 66888899999999999999999999999999999999999 88889999999999988765    56799999999


Q ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        140 DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       140 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                      |..|.||||.|++.|+.+++++|+++|+++ .+|..|+||||+|+++|+.+++++|..
T Consensus       327 d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999 689999999999999999999888743

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-28  Score=174.17  Aligned_cols=196  Identities=21%  Similarity=0.304  Sum_probs=159.7

Q ss_pred             CcceeehccCChhHHHHHhhccch------------------hhHHHHHHHHHHcCCCCCch---hhcccchhhhhhhcc
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDR------------------LMLSNCLSLLVQHGTLPDYH---EEAKLHGKLHGCTCR   61 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~------------------~~~~~~v~~ll~~g~~~~~~---~~~~~~~~~~a~~~~   61 (207)
                      ||||+||.+|+.++++.+++....                  ....+++++|+++|++++..   +..+.++++.+....
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            899999999999999988775432                  11137999999999988754   445667888777766


Q ss_pred             CCchHH-HHhcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHH----hhcC
Q psy14140         62 KGESTK-VRDQGVDP--NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV----RDQG  133 (207)
Q Consensus        62 ~~~~~~-ll~~g~~~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l----~~~~  133 (207)
                      ...+.. ++..+.+.  ...+..+.++++.++..++.++++.|+..+... ..+..|.||+|+++..++.++    +..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            665554 55666544  456778899999999999999999999999888 889999999999999998873    4444


Q ss_pred             -CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHH-hCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        134 -VDPNLKDGDGATPLHFAASRGHADCVRWLLR-YGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       134 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                       .+++..|.+|.||||+|+..|+.+++++|++ .|+++ .++..|+||||+|+..         ..++.|++.|+|.
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---------~~~~~Ll~~g~d~  229 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---------QVKKFFLNNVVDA  229 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---------HHHHHHHHHCCCC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---------HHHHHHHHcCCCC
Confidence             6788899999999999999999999999996 59999 6899999999998743         3478999999873

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=4.8e-28  Score=170.33  Aligned_cols=176  Identities=19%  Similarity=0.226  Sum_probs=146.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHHHH--hcCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTKVR--DQGVDPNLKDG   80 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~ll--~~g~~~~~~~~   80 (207)
                      ||||+||.+|+.++                +++|+++|+++|..+..+.+++..++.........+.  ...........
T Consensus        25 t~L~~A~~~g~~e~----------------v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
T d1ot8a_          25 TSLHLAARFARADA----------------AKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH   88 (209)
T ss_dssp             CHHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred             CHHHHHHHcCCHHH----------------HHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            78888888888874                7788888888888888888787777666665555432  22223334455


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCC
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGH  155 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~  155 (207)
                      .+.++.+.+.........+.|...+.++ .++..|.||+++++..+...    ++..+.+++..|..|.||||.|+..|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccH
Confidence            6778888888888888889999999888 88999999999999988876    457899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .+++++|+++|+++ .++..|+||||+|+++|+.+++++|
T Consensus       169 ~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         169 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999 6899999999999999999997765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=173.84  Aligned_cols=178  Identities=24%  Similarity=0.337  Sum_probs=146.1

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+||.+|+.++++.            +++.+.+.|+++|..+..|.+|+++|+..++..+.. |++.|++.+..+.
T Consensus         4 ~TpLh~A~~~g~~~~v~~------------Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~   71 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHR------------LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR   71 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHH------------HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccHHHHHHHcCCHHHHHH------------HHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccc
Confidence            489999999999999774            466677899999999999999999999999888776 7899999999998


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc---------------------------------------CCCCCCCcHHHHH
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL---------------------------------------VPDKFGKSPINDA  121 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------------------------------------~~~~~g~~~l~~a  121 (207)
                      .+.++++.|....+.++++.+.......                                       .....+.++++.+
T Consensus        72 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a  151 (228)
T d1k1aa_          72 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  151 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHH
Confidence            8999999988888888777765443221                                       2233466677777


Q ss_pred             HhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCccee
Q psy14140        122 AENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVS  191 (207)
Q Consensus       122 ~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~  191 (207)
                      +..+...    +++.+...+..+..|.|||++|+..|+.+++++|+++|+++ .++..|+||||+|+++|+.|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            7666554    45678888888899999999999999999999999999999 6888999999999988887764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-27  Score=172.54  Aligned_cols=199  Identities=22%  Similarity=0.262  Sum_probs=151.1

Q ss_pred             CcceeehccCChhHHHHHhhccchhh-----------------HHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCch
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLM-----------------LSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGES   65 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~-----------------~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~   65 (207)
                      ||||+|+.+|+.++++.+++.+....                 ..+.....+++..+....+..+.+++..++..+....
T Consensus        41 tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  120 (285)
T d1wdya_          41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA  120 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhh
Confidence            67777777777777776666544311                 1244555666665555555666666766666655544


Q ss_pred             HH-HHhcCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcCh----HH
Q psy14140         66 TK-VRDQGVDPNLK----------DGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQ----ME  128 (207)
Q Consensus        66 ~~-ll~~g~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~----~~  128 (207)
                      .. ++....+++..          +..|.||||+|+++++.+++++|++. |.++ ..+..|.++.........    ..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  200 (285)
T d1wdya_         121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             hhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHH
Confidence            43 55555555443          34689999999999999999999976 6677 888888888777654332    22


Q ss_pred             ----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHh-CCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhh
Q psy14140        129 ----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLT  202 (207)
Q Consensus       129 ----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~  202 (207)
                          |++.|++++..+..|.||||.|++.|+.+++++|++. |+++ .++..|.||||+|++.|+.++      ++.||+
T Consensus       201 i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~ei------v~~Ll~  274 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI------AELLCK  274 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH------HHHHHH
T ss_pred             HHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHH------HHHHHH
Confidence                6789999999999999999999999999999999974 8899 688999999999999999997      899999


Q ss_pred             cccCC
Q psy14140        203 IQKVP  207 (207)
Q Consensus       203 ~~~~p  207 (207)
                      .|++|
T Consensus       275 ~GAd~  279 (285)
T d1wdya_         275 RGAST  279 (285)
T ss_dssp             HSSCS
T ss_pred             CCCCC
Confidence            99987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-27  Score=170.10  Aligned_cols=171  Identities=22%  Similarity=0.198  Sum_probs=145.4

Q ss_pred             HHHHHHHH-cCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy14140         31 NCLSLLVQ-HGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNL---KDGDGATPLHFAASRGHADCVRWLLRYG  105 (207)
Q Consensus        31 ~~v~~ll~-~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  105 (207)
                      ++++.|++ ++..++.++..|.+|+++|+..++.++.. |++.|++++.   .+..|.+|+++++..+..++++.++..+
T Consensus        14 ~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (229)
T d1ixva_          14 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP   93 (229)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSS
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            56666665 67889999999999999999999888776 7799999874   5678999999999999999999998887


Q ss_pred             CCc---CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCC-Cc-cCCCCCC
Q psy14140        106 GKL---VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGG-KL-VPDKFGK  176 (207)
Q Consensus       106 ~~~---~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~-~~~~~g~  176 (207)
                      ...   ..+..+.++++.++..+..+    ++..+...+..+..|+||||.|+..|+.+++++|++.+. ++ .++..|+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~  173 (229)
T d1ixva_          94 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW  173 (229)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccC
Confidence            655   67788999999999988877    567889999999999999999999999999999999875 44 5888999


Q ss_pred             CHHHHHHHcCCcceeehHHHHHHHhh-cccCC
Q psy14140        177 SPINDAAENQQMEVSTVSPVVRRLLT-IQKVP  207 (207)
Q Consensus       177 t~l~~a~~~~~~~~~~~l~~~~~ll~-~~~~p  207 (207)
                      ||||+|+++|+.++      ++.|++ .|++|
T Consensus       174 TpLh~A~~~~~~~~------v~~Ll~~~gad~  199 (229)
T d1ixva_         174 TPLFHALAEGHGDA------AVLLVEKYGAEY  199 (229)
T ss_dssp             CHHHHHHHTTCHHH------HHHHHHHHCCCS
T ss_pred             CchhhhcccccHHH------HHHHHHhcCCCC
Confidence            99999999999998      555664 36654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=181.61  Aligned_cols=172  Identities=29%  Similarity=0.413  Sum_probs=136.2

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||+||..|+.++                |++|+++|+++|..+..|.+|++.|+..++.++.. |+++|++++..+..
T Consensus         2 TpL~~Aa~~g~~~~----------------v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~   65 (408)
T d1n11a_           2 TPLHVASFMGHLPI----------------VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD   65 (408)
T ss_dssp             CHHHHHHHHTCHHH----------------HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             ChHHHHHHCcCHHH----------------HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence            89999999999985                88999999999999999999999999999988777 77999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-C---------------------------------CCCCCCcHHHHHHhcChH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-V---------------------------------PDKFGKSPINDAAENQQM  127 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~---------------------------------~~~~g~~~l~~a~~~~~~  127 (207)
                      |.|||++|+..|+.+++++|+..+... .                                 .+..+.++++.++..++.
T Consensus        66 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~  145 (408)
T d1n11a_          66 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV  145 (408)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCH
Confidence            999999999999999999998776554 2                                 234455666666666655


Q ss_pred             H----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        128 E----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       128 ~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      +    +++.+.+++..+..|.+||+.|+..++.+++++|+.+|+++ ..+..|.||++++....+.+.
T Consensus       146 ~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~  213 (408)
T d1n11a_         146 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV  213 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhh
Confidence            4    44566666666666777777777777777777777777666 466666777777766666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-27  Score=173.10  Aligned_cols=158  Identities=25%  Similarity=0.298  Sum_probs=136.2

Q ss_pred             CchhhcccchhhhhhhccCCchHH-HHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHH
Q psy14140         44 DYHEEAKLHGKLHGCTCRKGESTK-VRDQGVD---PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPI  118 (207)
Q Consensus        44 ~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l  118 (207)
                      ++-++.|.+|+++|+..++..+.. |++.|++   ++.++..|.||||+|+..|+.+++++|++.|+++ ..+.+|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            566789999999999999988877 6788887   6678889999999999999999999999999999 9999999999


Q ss_pred             HHHHhcChHHHh---------------------------------------------------hcCCCCCCCCCCCCcHH
Q psy14140        119 NDAAENQQMEVR---------------------------------------------------DQGVDPNLKDGDGATPL  147 (207)
Q Consensus       119 ~~a~~~~~~~l~---------------------------------------------------~~~~~~~~~~~~g~t~l  147 (207)
                      |+|+..+..+++                                                   ..+.+++..+..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999988865421                                                   01334566788999999


Q ss_pred             HHHHHCCCHHHHHHHHHhCCCc--cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        148 HFAASRGHADCVRWLLRYGGKL--VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       148 ~~a~~~~~~~~~~~Ll~~g~~~--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+|+..++.+++++|++.+.+.  ..+..|.||||+|++.++.++      ++.|++.|++|
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~------v~~Ll~~gadi  218 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV------LELLLKAGADP  218 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH------HHHHHHTTCCT
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHH------HHHHHHCCCCC
Confidence            9999999999999999999988  356789999999999999887      66777777765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=158.93  Aligned_cols=143  Identities=27%  Similarity=0.349  Sum_probs=89.3

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      +|||+||.+|+.++                |+.|+++|+++|..+..|.+|++.|+ .++.++.. |++.|++++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~----------------v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~   65 (156)
T d1ihba_           3 NELASAAARGDLEQ----------------LTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT   65 (156)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHHcCCHHH----------------HHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccccccccc
Confidence            46666666666653                56666666666666655555555443 33333332 44555555555555


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRW  161 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  161 (207)
                      +.++++.++..++.+.++.++..+                            .+++..+..|.++++.|+..++.+++++
T Consensus        66 ~~~~l~~~~~~~~~~~~~~l~~~~----------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~  117 (156)
T d1ihba_          66 GFAVIHDAARAGFLDTLQTLLEFQ----------------------------ADVNIEDNEGNLPLHLAAKEGHLRVVEF  117 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             Cccccccccccccccccccccccc----------------------------cccccccccccccccccccccccccccc
Confidence            555655555555555555555554                            4555666677777777777777777777


Q ss_pred             HHHhCC-Cc-cCCCCCCCHHHHHHHcCCcce
Q psy14140        162 LLRYGG-KL-VPDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       162 Ll~~g~-~~-~~~~~g~t~l~~a~~~~~~~~  190 (207)
                      |+++++ +. .++..|+||||+|++.++.++
T Consensus       118 Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_         118 LVKHTASNVGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            777765 34 466777777777777777776

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.2e-27  Score=174.90  Aligned_cols=184  Identities=22%  Similarity=0.254  Sum_probs=146.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH---------HHhcC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK---------VRDQG   72 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~---------ll~~g   72 (207)
                      .||||+|+..+..+.               +++.|.+.+++..- ...+.+|+++|+..++..++.         +++.|
T Consensus         1 ~~p~~~~~~~~~~~~---------------~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G   64 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYA---------------ITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG   64 (277)
T ss_dssp             CCCCHHHHHHHSSSC---------------CCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC
T ss_pred             CChHHHHHHhCCCHH---------------HHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcC
Confidence            589997776655552               34555555555422 235889999999999887654         35789


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHHHh---------------------
Q psy14140         73 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVR---------------------  130 (207)
Q Consensus        73 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~l~---------------------  130 (207)
                      +|+|.+|..|.||||+|++.|+.+++++|++.|+++ .++.+|.||+++++..++..+.                     
T Consensus        65 advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  144 (277)
T d2fo1e1          65 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  144 (277)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccc
Confidence            999999999999999999999999999999999999 8999999999999988854310                     


Q ss_pred             ------------------------------hcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHH-HhCCCc-cCCCCCCCH
Q psy14140        131 ------------------------------DQGVDPNLKDGDGATPLHFAASRGHADCVRWLL-RYGGKL-VPDKFGKSP  178 (207)
Q Consensus       131 ------------------------------~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g~~~-~~~~~g~t~  178 (207)
                                                    ......+..+..|.|+|+.++..++.+..++++ ..+.+. .++..|+||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tp  224 (277)
T d2fo1e1         145 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  224 (277)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             hhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCH
Confidence                                          012223445678999999999999999999876 456666 589999999


Q ss_pred             HHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        179 INDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       179 l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ||+|++.|+.++      ++.|++.|++|
T Consensus       225 L~~A~~~g~~~i------v~~Ll~~gadi  247 (277)
T d2fo1e1         225 IMLAAQEGRIEV------VMYLIQQGASV  247 (277)
T ss_dssp             HHHHHHHTCHHH------HHHHHHTTCCS
T ss_pred             HHHHHHcCCHHH------HHHHHHCcCCC
Confidence            999999999988      67777888764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=155.29  Aligned_cols=109  Identities=27%  Similarity=0.405  Sum_probs=93.2

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHH
Q psy14140         84 TPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADC  158 (207)
Q Consensus        84 t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  158 (207)
                      ++||+|+..|+.+++++|++.|+++ .+|.+|.||||+|+ .++.+    +++.+++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6788888888888888888888887 77888888888765 45555    457788889999999999999999999999


Q ss_pred             HHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        159 VRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       159 ~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                      .++|++.+.++ ..+..|.+|+++|+..++.+++++
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  117 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF  117 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            99999999999 688999999999999999998444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.1e-26  Score=153.47  Aligned_cols=143  Identities=26%  Similarity=0.404  Sum_probs=129.9

Q ss_pred             cchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH
Q psy14140         51 LHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  128 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~  128 (207)
                      .+|++.|+..++.+++. |++.|++++ .|..|.||||+|+..++.++++.++...... ..+..+.++++.++.....+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            37899999999988877 789999887 6899999999999999999999999887777 77778889999999888776


Q ss_pred             ----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        129 ----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       129 ----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                          +...+.+.+..+..|.||||+|+..|+.+++++|++.|+++ .++..|+||||+|+.+|+.|++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                45789999999999999999999999999999999999999 6899999999999999999997765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=4.7e-27  Score=173.11  Aligned_cols=178  Identities=21%  Similarity=0.267  Sum_probs=153.2

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .||||+|+.+|+.++                +++|+++|.+.+..+..+.+|++.++..++..+.. +++.|+..+..+.
T Consensus        74 ~T~L~~A~~~g~~ei----------------v~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~  137 (291)
T d1s70b_          74 LTALHQACIDDNVDM----------------VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS  137 (291)
T ss_dssp             CBHHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcHHHHHHhcCCcee----------------eeeecccccccccccccccccccccccccccchhhcccccCcccccccc
Confidence            389999999999985                78888899988888888899999998888877766 7899999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhC-C--------------------------Cc-CCCCCCCcHHHHHHhcChHH----
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYG-G--------------------------KL-VPDKFGKSPINDAAENQQME----  128 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~-~--------------------------~~-~~~~~g~~~l~~a~~~~~~~----  128 (207)
                      .+.+++++|+..++.+.++.++... .                          .. ..+..|.||||.++..++.+    
T Consensus       138 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  217 (291)
T d1s70b_         138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL  217 (291)
T ss_dssp             TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcc
Confidence            9999999999888888887776432 1                          12 56778999999999999877    


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHH
Q psy14140        129 VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRR  199 (207)
Q Consensus       129 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~  199 (207)
                      +++.|++++..+..|+||||+|+..|+.+++++|+++|+++ .+|..|+||||+|++    +++++|..++.
T Consensus       218 Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             cccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence            56899999999999999999999999999999999999999 689999999999964    56666655443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.8e-26  Score=152.37  Aligned_cols=125  Identities=27%  Similarity=0.399  Sum_probs=70.4

Q ss_pred             CCCCCchhhcccchhhhhhhccCCchHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHH
Q psy14140         40 GTLPDYHEEAKLHGKLHGCTCRKGESTKVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPIN  119 (207)
Q Consensus        40 g~~~~~~~~~~~~~~~~a~~~~~~~~~~ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~  119 (207)
                      ++++|..+..+.+|+++|+......+..|++.+.+++..+..|.+|++.++..++.++++++++.+              
T Consensus        26 ~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------------   91 (156)
T d1bd8a_          26 LVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG--------------   91 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--------------
T ss_pred             CCCCCccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            455555555555555544432222222245555555555555555555555555555555555554              


Q ss_pred             HHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeeh
Q psy14140        120 DAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTV  193 (207)
Q Consensus       120 ~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~  193 (207)
                                    ++++..+..|.||||+|+..|+.+++++|+ .|+++ .++..|+||||+|++.|+.+++++
T Consensus        92 --------------~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~  151 (156)
T d1bd8a_          92 --------------ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             --------------CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             --------------cccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                          455555666666666666666666666555 45566 466666666666666666666433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.4e-26  Score=151.92  Aligned_cols=110  Identities=31%  Similarity=0.431  Sum_probs=87.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHHh-CCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHH
Q psy14140         84 TPLHFAASRGHADCVRWLLRY-GGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHAD  157 (207)
Q Consensus        84 t~l~~a~~~~~~~~~~~Ll~~-~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  157 (207)
                      ++|+.|+..|+.++++.|++. +.++ ..|..|.||||+|+. ++.+    +++.+.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            356777777777777777665 4455 667777777777654 3333    45667788888889999999999999999


Q ss_pred             HHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        158 CVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       158 ~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      ++++++++|+++ .++..|+||||+|+..|+.+++++|
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L  120 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL  120 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccCCCCeeeccccccccccccccc
Confidence            999999999999 6888999999999999999985443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-24  Score=145.87  Aligned_cols=143  Identities=22%  Similarity=0.271  Sum_probs=128.7

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCC
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGD   81 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~   81 (207)
                      ||||.||..|+.++                |++|+++|++++ .+..|.+|+++|+..++..+.. +..........+..
T Consensus         4 t~L~~Aa~~g~~~~----------------v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~   66 (153)
T d1awcb_           4 KKLLEAARAGQDDE----------------VRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHTCHHH----------------HHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHHHHHCCCHHH----------------HHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccc
Confidence            79999999999985                888889999877 5888999999999888877665 55666677777788


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCH
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHA  156 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~  156 (207)
                      +.++++.++...+.+.++++...+.+. .++..|.||||+|+..++.+    +++.|++++..|..|.|||++|+..|+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCH
Confidence            899999999999999999999999988 89999999999999999987    5689999999999999999999999999


Q ss_pred             HHHHHH
Q psy14140        157 DCVRWL  162 (207)
Q Consensus       157 ~~~~~L  162 (207)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-24  Score=152.74  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=127.6

Q ss_pred             cccchhhhhhhccCCchHH-----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHH
Q psy14140         49 AKLHGKLHGCTCRKGESTK-----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  122 (207)
Q Consensus        49 ~~~~~~~~a~~~~~~~~~~-----ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~  122 (207)
                      .|.+|+++|+..++..+..     +...|+++|.+|..|+||||+|+..++.+++++|++.|+++ .++..|.+|+++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            3678999999998865433     45789999999999999999999999999999999999999 99999999999999


Q ss_pred             hcChHH----HhhcCCC------CCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-c-CCCCCCCHHHHHHHcCCcce
Q psy14140        123 ENQQME----VRDQGVD------PNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-V-PDKFGKSPINDAAENQQMEV  190 (207)
Q Consensus       123 ~~~~~~----l~~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~-~~~~g~t~l~~a~~~~~~~~  190 (207)
                      ..+..+    ++..+..      .......|.||++.|+..++.+++++|+..|... . .+..|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            998776    3333333      2334556899999999999999999999999888 3 55679999999999999998


Q ss_pred             eehHHHHHHHhhcccCC
Q psy14140        191 STVSPVVRRLLTIQKVP  207 (207)
Q Consensus       191 ~~~l~~~~~ll~~~~~p  207 (207)
                            ++.|++.|++|
T Consensus       161 ------v~~Ll~~gad~  171 (221)
T d1iknd_         161 ------VSLLLKCGADV  171 (221)
T ss_dssp             ------HHHHHTTTCCS
T ss_pred             ------HHHHHhcCCcc
Confidence                  67778888875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=3.2e-28  Score=183.73  Aligned_cols=184  Identities=13%  Similarity=0.023  Sum_probs=138.9

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCC--
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKD--   79 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~--   79 (207)
                      ||||+||.+|+.++++             +++.|++.|+++|..+..+.+|+++||..|+.+++. |++.|++++..+  
T Consensus        92 t~L~~Aa~~g~~~~~~-------------~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~  158 (346)
T d2ajaa1          92 VICFVAAITGCSSALD-------------TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  158 (346)
T ss_dssp             HHHHHHHHHCCHHHHH-------------HHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             cHHHHHHHhCCHHHHH-------------HHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            7899999999998643             567789999999999999999999999999988887 779999998765  


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc----CCCCCCCcHHHHHHhcChHHHh----hcCCCC---------------
Q psy14140         80 GDGATPLHFAASRGHADCVRWLLRYGGKL----VPDKFGKSPINDAAENQQMEVR----DQGVDP---------------  136 (207)
Q Consensus        80 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~----~~~~~g~~~l~~a~~~~~~~l~----~~~~~~---------------  136 (207)
                      ..|.||||+|+..|+.+++++|++.|+..    ..+..+.+|++.|+..|+.+++    +.|+++               
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            45899999999999999999999998765    2344567788888889987632    211110               


Q ss_pred             ---------------------------CCCCC-------CCCcHHHHHHHCCCHHHHHHHHHhCCCc------cCCCCCC
Q psy14140        137 ---------------------------NLKDG-------DGATPLHFAASRGHADCVRWLLRYGGKL------VPDKFGK  176 (207)
Q Consensus       137 ---------------------------~~~~~-------~g~t~l~~a~~~~~~~~~~~Ll~~g~~~------~~~~~g~  176 (207)
                                                 +..+.       .+.++++.+...++.+++++|++.+...      ..+..|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence                                       00000       0125677777788899999999877643      2345689


Q ss_pred             CHHHHHHHcCCcceeehHHHHHH
Q psy14140        177 SPINDAAENQQMEVSTVSPVVRR  199 (207)
Q Consensus       177 t~l~~a~~~~~~~~~~~l~~~~~  199 (207)
                      ||||+|++.|+.+++++|-.+..
T Consensus       319 T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         319 ELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             cHHHHHHHcCcHHHHHHHhCCCC
Confidence            99999999999999777744443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=139.48  Aligned_cols=112  Identities=32%  Similarity=0.449  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCC-cHHHHHHHCCC
Q psy14140         82 GATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGA-TPLHFAASRGH  155 (207)
Q Consensus        82 g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~-t~l~~a~~~~~  155 (207)
                      +.++||+|++.|+.+++++|++.|+++ .++..|.||+|.|+ .++.+    +++.|++++..+..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            357888999999999999998888888 88888888888665 46655    5678888998888776 69999999999


Q ss_pred             HHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehH
Q psy14140        156 ADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVS  194 (207)
Q Consensus       156 ~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l  194 (207)
                      .+++++|+++|+++ .++..|+||||+|+++|+.|++++|
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999 6899999999999999999986554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.6e-25  Score=142.47  Aligned_cols=106  Identities=23%  Similarity=0.264  Sum_probs=97.6

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .|||++|+.+|+.++                |++|+++|++++..+..+.+|+++|+..++..+.. +++.|++++.+|.
T Consensus         3 ~tpL~~A~~~g~~~~----------------v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDE----------------VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK   66 (118)
T ss_dssp             HHHHHHHHHTTCHHH----------------HHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS
T ss_pred             ChHHHHHHHCCCHHH----------------HHHHHHhhhccccccccccccccccccccccccccccccccceeeeccc
Confidence            379999999999985                88999999999999999999999999999988776 7799999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHh
Q psy14140         81 DGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAE  123 (207)
Q Consensus        81 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~  123 (207)
                      .|.||||+|+..++.+++++|++.|+++ .+|..|.||+|+|..
T Consensus        67 ~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             ccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            9999999999999999999999999988 889999999988743

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=2.4e-23  Score=145.96  Aligned_cols=171  Identities=24%  Similarity=0.264  Sum_probs=148.3

Q ss_pred             HHHHHHHHcCCCCCc-hhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Q psy14140         31 NCLSLLVQHGTLPDY-HEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL  108 (207)
Q Consensus        31 ~~v~~ll~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  108 (207)
                      ++|++|+++|+++|. .+..|.+|+++||..++.++.. |++.|++++..+..+.++++.++..++..............
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            689999999999987 4889999999999999998887 78999999999999999999999999888776665554444


Q ss_pred             --CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHH
Q psy14140        109 --VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPIND  181 (207)
Q Consensus       109 --~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~  181 (207)
                        .....+.++.+.+.......    +...+.+++..+..|.||++.++..+..++++.+++++.++ ..+..|.||||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~  162 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL  162 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccch
Confidence              56667778888776555432    66889999999999999999999999999999999999999 688999999999


Q ss_pred             HHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        182 AAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       182 a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      |+..|+.++      ++.|++.|++|
T Consensus       163 A~~~g~~~~------v~~Ll~~gad~  182 (209)
T d1ot8a_         163 AAREGSYEA------SKALLDNFANR  182 (209)
T ss_dssp             HHHTTCHHH------HHHHHHTTCCT
T ss_pred             hccccHHHH------HHHHHHCCCCC
Confidence            999999998      67777888775

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.3e-25  Score=139.87  Aligned_cols=101  Identities=28%  Similarity=0.371  Sum_probs=90.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHH
Q psy14140         83 ATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHAD  157 (207)
Q Consensus        83 ~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  157 (207)
                      .|||++|++.|+.+++++|++.|+++ .++..|.||+|+|+..++.+    +++.|++++..|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            36888888888999999888888888 88888889999888888766    56788999999999999999999999999


Q ss_pred             HHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        158 CVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       158 ~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      ++++|+++|+++ .++..|+||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999 68999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4e-24  Score=138.28  Aligned_cols=118  Identities=25%  Similarity=0.318  Sum_probs=94.8

Q ss_pred             CCcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhhcccchhhhhhhccCCchHH-HHhcCCCCCCCCC
Q psy14140          2 AHPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDG   80 (207)
Q Consensus         2 ~tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~   80 (207)
                      .++||+||.+|++++                +++|+++|+++|..+..+.++++.+ ..++..+.. |++.|++++.++.
T Consensus         4 ~~~L~~Aa~~G~~~~----------------v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~   66 (125)
T d1bi7b_           4 ADWLATAAARGRVEE----------------VRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADP   66 (125)
T ss_dssp             TTHHHHHHHHTCHHH----------------HHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCT
T ss_pred             hhHHHHHHHCCCHHH----------------HHHHHHcCCcccccccccccccccc-ccccccccccccccccccccccc
Confidence            478999999999985                8889999999999999888887655 456655555 7799999999888


Q ss_pred             CCC-CHHHHHHHcCCHHHHHHHHHhCCCcCCCCCCCcHHHHHHhcChHHHhhcCCCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy14140         81 DGA-TPLHFAASRGHADCVRWLLRYGGKLVPDKFGKSPINDAAENQQMEVRDQGVDPNLKDGDGATPLHFAASRGHADCV  159 (207)
Q Consensus        81 ~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~g~~~l~~a~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  159 (207)
                      .+. ||||+|++.|+.+++++|++.|++                            ++..|..|+||||+|++.|+.+++
T Consensus        67 ~~~~~~L~~A~~~g~~~~v~~Ll~~ga~----------------------------~~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          67 ATLTRPVHDAAREGFLDTLVVLHRAGAR----------------------------LDVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCC----------------------------SSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccc----------------------------cccccCCCCCHHHHHHHcCCHHHH
Confidence            765 699999999999999999988764                            456666777777777777777777


Q ss_pred             HHHHH
Q psy14140        160 RWLLR  164 (207)
Q Consensus       160 ~~Ll~  164 (207)
                      ++|++
T Consensus       119 ~~Lls  123 (125)
T d1bi7b_         119 RYLRA  123 (125)
T ss_dssp             HHHSS
T ss_pred             HHHHh
Confidence            77753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.6e-24  Score=160.45  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=92.4

Q ss_pred             cCCCCCch-hhcccchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCH-------HHHHHHHHhCCCcC
Q psy14140         39 HGTLPDYH-EEAKLHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHA-------DCVRWLLRYGGKLV  109 (207)
Q Consensus        39 ~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~-------~~~~~Ll~~~~~~~  109 (207)
                      .++++|.. |..|.+|+++||..++.+++. |++.|++++.+|..|.||||.|+..++.       ++++++.+...  .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~--~  172 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI--L  172 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG--E
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhh--h
Confidence            45555544 556666666666666655554 4566666666666666666666654431       23333322111  4


Q ss_pred             CCCCCCcHHHHHHhcChH-----------H-----Hhh-------------------------------------cCCCC
Q psy14140        110 PDKFGKSPINDAAENQQM-----------E-----VRD-------------------------------------QGVDP  136 (207)
Q Consensus       110 ~~~~g~~~l~~a~~~~~~-----------~-----l~~-------------------------------------~~~~~  136 (207)
                      +|..|+||+|+++..+..           +     +..                                     ....+
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            455666666655432210           0     000                                     01126


Q ss_pred             CCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHH
Q psy14140        137 NLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  183 (207)
Q Consensus       137 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~  183 (207)
                      +.+|..|+||||+|++.|+.+++++|++.|+++ .+|+.|.|||++|+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            788999999999999999999999999999999 79999999999885

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.2e-23  Score=134.86  Aligned_cols=114  Identities=23%  Similarity=0.270  Sum_probs=85.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcCCCCCCCCCCCCcHHHHHHHCCCHHHH
Q psy14140         85 PLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQGVDPNLKDGDGATPLHFAASRGHADCV  159 (207)
Q Consensus        85 ~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  159 (207)
                      +|+.|+..|+.+++++|++.|+++ .+|.+|.||||+|+..++.+    +++.|++++..|.+|+||||+|+..|+.+++
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            456666666666666666666666 66666666666666666555    3456678888899999999999999999999


Q ss_pred             HHHHHhCCCc-cCC-CCCCCHHHHH--HHcCCcceeehHHHHH
Q psy14140        160 RWLLRYGGKL-VPD-KFGKSPINDA--AENQQMEVSTVSPVVR  198 (207)
Q Consensus       160 ~~Ll~~g~~~-~~~-~~g~t~l~~a--~~~~~~~~~~~l~~~~  198 (207)
                      ++|+++|+++ ..+ ..++||++++  .+.|+.|++++|..++
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999 344 4588887655  5778899988776554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.1e-21  Score=135.59  Aligned_cols=153  Identities=20%  Similarity=0.246  Sum_probs=129.4

Q ss_pred             cccchhhhhhhccCCchHH-H----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHH
Q psy14140         49 AKLHGKLHGCTCRKGESTK-V----RDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAA  122 (207)
Q Consensus        49 ~~~~~~~~a~~~~~~~~~~-l----l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~  122 (207)
                      .|.||++.||..++.+++. |    .+.|++++.+|..|.||||+|+..|+.+++++|++.|+.. ..+..+.++++.+.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            5889999999999887665 3    3689999999999999999999999999999999999988 88889999999987


Q ss_pred             hcChHHHh-----------------------------------------hcCCC-CCCCCCCCCcHHHHHHHCCCHHHHH
Q psy14140        123 ENQQMEVR-----------------------------------------DQGVD-PNLKDGDGATPLHFAASRGHADCVR  160 (207)
Q Consensus       123 ~~~~~~l~-----------------------------------------~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~  160 (207)
                      .......+                                         ....+ .......+.++++.|+..+...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            76654311                                         11222 2234557889999999999999999


Q ss_pred             HHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        161 WLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       161 ~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      ++++.|.+. .++..|.|||++|+..|+.++      ++.|++.|++|
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~------v~~Ll~~Gad~  203 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPL------VRTLVRSGADS  203 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH------HHHHHHTTCCT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHH------HHHHHHCCCCC
Confidence            999999988 689999999999999999987      77788888875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-20  Score=136.93  Aligned_cols=182  Identities=26%  Similarity=0.323  Sum_probs=122.8

Q ss_pred             CcceeehccCChhHHHHHhhccchhhHHHHHHHHHHcCCCCCchhh-cccchhhhhhhccCCchHH-HHhcCCCCC----
Q psy14140          3 HPLFIRAVSGDVKCSSQAGSMGDRLMLSNCLSLLVQHGTLPDYHEE-AKLHGKLHGCTCRKGESTK-VRDQGVDPN----   76 (207)
Q Consensus         3 tpl~~Aa~~g~~~~~~~~~~~~~~~~~~~~v~~ll~~g~~~~~~~~-~~~~~~~~a~~~~~~~~~~-ll~~g~~~~----   76 (207)
                      |+||.|+.+|+.++                |++|+++|+++|..+. .+.+|+++|+..++..+.. |++.+.+.+    
T Consensus         7 ~~L~~Ai~~~~~e~----------------vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~   70 (285)
T d1wdya_           7 HLLIKAVQNEDVDL----------------VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK   70 (285)
T ss_dssp             HHHHHHHHTTCHHH----------------HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCHHH----------------HHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccccccc
Confidence            68999999999986                5556666666655443 4555666666655555544 334444443    


Q ss_pred             -----------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----------CCCCCCCc
Q psy14140         77 -----------------------------LKDGDGATPLHFAASRGHADCVRWLLRYGGKL-----------VPDKFGKS  116 (207)
Q Consensus        77 -----------------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-----------~~~~~g~~  116 (207)
                                                   ..+..+.++++.++..++...+..++......           ..+..|.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (285)
T d1wdya_          71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred             ccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCch
Confidence                                         34445666677777777776666666654332           23445778


Q ss_pred             HHHHHHhcChHHH----h-hcCCCCCCCCCCCCcHHHHHHHCC----CHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcC
Q psy14140        117 PINDAAENQQMEV----R-DQGVDPNLKDGDGATPLHFAASRG----HADCVRWLLRYGGKL-VPDKFGKSPINDAAENQ  186 (207)
Q Consensus       117 ~l~~a~~~~~~~l----~-~~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~  186 (207)
                      |||+|+..+..++    + ..+++++..+..|.++...+....    ...++++|+++|+++ .++..|.||||+|++.|
T Consensus       151 ~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~  230 (285)
T d1wdya_         151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC
Confidence            8888888887662    2 457788888888887776655433    356888888999998 57889999999999999


Q ss_pred             CcceeehHHHHHHHhhc-ccC
Q psy14140        187 QMEVSTVSPVVRRLLTI-QKV  206 (207)
Q Consensus       187 ~~~~~~~l~~~~~ll~~-~~~  206 (207)
                      +.++      ++.||+. |++
T Consensus       231 ~~~~------v~~lL~~~g~d  245 (285)
T d1wdya_         231 HLGL------VQRLLEQEHIE  245 (285)
T ss_dssp             CHHH------HHHHHHSSSCC
T ss_pred             cHHH------HHHHHHcCCCC
Confidence            9887      5555543 443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.6e-21  Score=127.03  Aligned_cols=99  Identities=22%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             HHhcCCCCCCC------CCCCCCHHHHHHHc---CCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH----HhhcC
Q psy14140         68 VRDQGVDPNLK------DGDGATPLHFAASR---GHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME----VRDQG  133 (207)
Q Consensus        68 ll~~g~~~~~~------~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~----l~~~~  133 (207)
                      ++..|++++.+      +..|.||||+|++.   ++.+++++|++.|+++ .+|..|.||||+|+..++.+    |++.|
T Consensus        25 ~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g  104 (154)
T d1dcqa1          25 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK  104 (154)
T ss_dssp             HHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccC
Confidence            44556655543      45566777776653   4566677777666655 55555555555555555444    33455


Q ss_pred             CCCCCCCCCCCcHHHHHHHCCCHHHHHHHHHhC
Q psy14140        134 VDPNLKDGDGATPLHFAASRGHADCVRWLLRYG  166 (207)
Q Consensus       134 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  166 (207)
                      ++++..|..|.||||+|++.|+.+++++|++.+
T Consensus       105 ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         105 ASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            555555555555555555555555555555443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=126.95  Aligned_cols=115  Identities=23%  Similarity=0.327  Sum_probs=98.5

Q ss_pred             cchhhhhhhccCCchHH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChHH
Q psy14140         51 LHGKLHGCTCRKGESTK-VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQME  128 (207)
Q Consensus        51 ~~~~~~a~~~~~~~~~~-ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~~  128 (207)
                      .+.++.|+..++.++++ |++.|+|+|.+|..|.||||+|+..++.+++++|++.|.++ .+|.+|+||||+|+.+|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            34677788888877766 77999999999999999999999999999999999999988 88999999999999999887


Q ss_pred             ----HhhcCCCCCCCCC-CCCcHHHHH--HHCCCHHHHHHHHHh
Q psy14140        129 ----VRDQGVDPNLKDG-DGATPLHFA--ASRGHADCVRWLLRY  165 (207)
Q Consensus       129 ----l~~~~~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~Ll~~  165 (207)
                          |++.|++++..+. .+.|+++++  ...|+.+++++|+..
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence                5678999987765 578887765  567889999999865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.2e-20  Score=123.68  Aligned_cols=112  Identities=16%  Similarity=0.249  Sum_probs=96.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCc-------CCCCCCCcHHHHHHhc---ChHH----HhhcCCCCCCCCCCCCcHHHHH
Q psy14140         85 PLHFAASRGHADCVRWLLRYGGKL-------VPDKFGKSPINDAAEN---QQME----VRDQGVDPNLKDGDGATPLHFA  150 (207)
Q Consensus        85 ~l~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~g~~~l~~a~~~---~~~~----l~~~~~~~~~~~~~g~t~l~~a  150 (207)
                      .|..|++.++...+..++..|.+.       ..+..|+||||+|+..   +..+    +++.|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            456678899999998888888765       2367799999999975   3444    5689999999999999999999


Q ss_pred             HHCCCHHHHHHHHHhCCCc-cCCCCCCCHHHHHHHcCCcceeehHHH
Q psy14140        151 ASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQMEVSTVSPV  196 (207)
Q Consensus       151 ~~~~~~~~~~~Ll~~g~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~  196 (207)
                      +..|+.+++++|+++|+++ .++..|+||||+|++.|+.+++++|..
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999 789999999999999999999665543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2e-20  Score=138.16  Aligned_cols=132  Identities=24%  Similarity=0.341  Sum_probs=102.8

Q ss_pred             hcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CCCCCCCcHHHHHHhcChH-------HHhh-cCCCCCCC
Q psy14140         70 DQGVDPNLK-DGDGATPLHFAASRGHADCVRWLLRYGGKL-VPDKFGKSPINDAAENQQM-------EVRD-QGVDPNLK  139 (207)
Q Consensus        70 ~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~g~~~l~~a~~~~~~-------~l~~-~~~~~~~~  139 (207)
                      ..++++|.+ |..|+||||+|+..|+.+++++|++.|+++ .+|..|+||||.|+..++-       .++. ....+...
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            457788876 999999999999999999999999999999 9999999999999986642       2332 23345667


Q ss_pred             CCCCCcHHHHHHHCCC----HHH--------HHHHHHhCCC-------------------------------------c-
Q psy14140        140 DGDGATPLHFAASRGH----ADC--------VRWLLRYGGK-------------------------------------L-  169 (207)
Q Consensus       140 ~~~g~t~l~~a~~~~~----~~~--------~~~Ll~~g~~-------------------------------------~-  169 (207)
                      |..|+|+||.++..+.    ...        +.+++..+..                                     + 
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence            8899999998875432    222        2333333221                                     2 


Q ss_pred             cCCCCCCCHHHHHHHcCCcceeehHHHHHHHhhcccCC
Q psy14140        170 VPDKFGKSPINDAAENQQMEVSTVSPVVRRLLTIQKVP  207 (207)
Q Consensus       170 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ll~~~~~p  207 (207)
                      .+|..|+||||+|++.|+.++      ++.|++.|++|
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~i------v~~Ll~~GAd~  285 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISI------VDALLDYGADP  285 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHH------HHHHHHTTCCT
T ss_pred             CCCCCCCCHHHHHHHcCCHHH------HHHHHHCCCCC
Confidence            357889999999999999987      88999999886

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=1.5e-23  Score=157.99  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=91.7

Q ss_pred             chhhcccchhhhhhhccCCchHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-CC--CCCCCcH
Q psy14140         45 YHEEAKLHGKLHGCTCRKGESTK----VRDQGVDPNLKDGDGATPLHFAASRGHADCVRWLLRYGGKL-VP--DKFGKSP  117 (207)
Q Consensus        45 ~~~~~~~~~~~~a~~~~~~~~~~----ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~--~~~g~~~  117 (207)
                      .++..+.++++.|+..|+..+..    |++.|++++..|..|.||||+||+.|+.+++++|++.|+++ ..  +.+|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            33446678888888888865543    56889999999999999999999999999999999998877 33  3568888


Q ss_pred             HHHHHhcChHHHh----hcCCCCC---CCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCc
Q psy14140        118 INDAAENQQMEVR----DQGVDPN---LKDGDGATPLHFAASRGHADCVRWLLRYGGKL  169 (207)
Q Consensus       118 l~~a~~~~~~~l~----~~~~~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  169 (207)
                      ||+|+..|+.+++    +.|.+..   ..+..+.|+++.|+..|+.+++++|++.|+++
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            8888888887743    4454432   22334567777788888888888888887776