Psyllid ID: psy14161

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGNCGNC
Secondary Structure (PSIPRED)
cEEEEEEcccccccEEEEEEcccccHHHHHHHccccccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mklvhknindkdksgvvalvpeesedmWHAYNLitegdsvraSTIRKVqsesntgsstssRVRTMLTISVESIDFDTQACVLRlkgncgnc
Flexible Loop (DISEMBL)
mklvhknindkdksgvVALVPEESEDMWHAYNLITEGDSVRASTIRKvqsesntgsstssrvRTMLTISvesidfdtqACVLRLKGNCGNC
Low Complexity Region (SEG)
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQsesntgsstssRVRTMLTISVESIDFDTQACVLRLKGNCGNC
Disordered region (IsUnstruct)
*****************ALV*****DMWHAYNLITE*******************************************************
Disordered Region (DISOPRED)
MKL*H********SGVVALVPEESEDMWHAYNLITEGDSVRAST********************MLTISVESIDFDTQACVLRLKGNCGNC
Disordered Region (DISEMBL)
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRAST*****************VRTMLTISVESIDFDTQACVLRLKGNCGNC
Disordered Region (DISPRO)
*KLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGNCGNC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGNCGNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
P48612	395	Protein pelota OS=Drosoph	yes	N/A	0.934	0.215	0.779	2e-30
Q7ZWC4	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.697	4e-29
Q9BRX2	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.709	1e-28
Q5RCE3	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.709	1e-28
Q58DV0	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.697	3e-28
Q5XIP1	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.697	4e-28
Q80X73	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.686	1e-27
Q5ZK01	385	Protein pelota homolog OS	yes	N/A	0.934	0.220	0.662	2e-27
Q5U567	383	Protein pelota homolog OS	N/A	N/A	0.934	0.221	0.674	6e-27
Q9USL5	390	Protein dom34 OS=Schizosa	yes	N/A	0.934	0.217	0.511	1e-18

>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2

 Score =  131 bits (329), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/86 (77%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V LVPEESEDMWHAYNLI +GDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVESIDFDTQACVLRLKG 85

Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLVHK+I +KD +G V L+P+E+EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  SS
Sbjct: 1  MKLVHKDI-EKDNAGQVTLIPDEAEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVETIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV KNI +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKNI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV KNI +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKNI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV K+I +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV K+I +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV K+I +KD +G V LVPEE EDMWH +NL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTFNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLV K++ +KD +G V L+PEE EDMWH YNL+  GDS+RASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLVRKDL-EKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          R+RT LT+ VE+IDFD+QAC LR+KG
Sbjct: 60 RIRTTLTLCVEAIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1

 Score =  119 bits (297), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/86 (67%), Positives = 73/86 (84%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K+I +KD +G V L+PEE+EDMWH YNL+  GDS++ASTIRKVQ+ES+TGS  S+
Sbjct: 1  MKLIRKDI-EKDNAGQVTLIPEEAEDMWHTYNLLHVGDSLQASTIRKVQTESSTGSVGSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI VE+IDFD+QAC LR+KG
Sbjct: 60 RVRTTLTICVETIDFDSQACQLRVKG 85

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9USL5|DOM34_SCHPO Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dom34 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ KNI +K+ SG + + PEE EDMWH YN++  GD ++AST+R+V     TGS++ S
Sbjct: 1  MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RV   L I VE++DFDT+A  L +KG
Sbjct: 60 RVVMKLRILVENMDFDTKAAQLHIKG 85

Involved in protein translation. Together with hbs1, may function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. The complex formed by dom34 and hbs1 has ribonuclease activity towards double-stranded RNA substrates, but does not cleave single-stranded RNA. Acts as endonuclease; has no exonuclease activity. Increases the affinity of hbs1 for GTP, but nor for GDP. Promotes G1 progression and differentiation and is involved in mitotic and meiotic cell divisions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
289743045	390	meiotic cell division protein Pelota/DOm	0.934	0.217	0.802	6e-33
193664632	394	PREDICTED: protein pelota-like isoform 1	0.934	0.215	0.767	4e-31
328702819	383	PREDICTED: protein pelota-like isoform 2	0.934	0.221	0.767	5e-31
195438391	396	GK24186 [Drosophila willistoni] gi|19416	0.934	0.214	0.767	3e-30
195063312	394	GH25139 [Drosophila grimshawi] gi|193895	0.934	0.215	0.779	4e-30
195118951	394	GI20011 [Drosophila mojavensis] gi|19391	0.934	0.215	0.779	4e-30
195147042	394	GL18928 [Drosophila persimilis] gi|19410	0.934	0.215	0.767	7e-30
125985205	394	GA17805 [Drosophila pseudoobscura pseudo	0.934	0.215	0.767	7e-30
194765587	394	GF22793 [Drosophila ananassae] gi|190617	0.934	0.215	0.767	8e-30
195339511	394	GM17647 [Drosophila sechellia] gi|194130	0.934	0.215	0.767	1e-29

>gi|289743045|gb|ADD20270.1| meiotic cell division protein Pelota/DOm34 [Glossina morsitans morsitans]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 77/86 (89%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+HKN+ DK   G V L+PEESEDMWHAYNL+ EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLIHKNV-DKGGQGTVVLIPEESEDMWHAYNLVAEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTISVESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTISVESIDFDTQACVLRLKG 85

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664632|ref|XP_001946898.1| PREDICTED: protein pelota-like isoform 1 [Acyrthosiphon pisum]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLVHK+I +KD  GVV L+PEE+EDMW AYN+I +GD +RASTIRKVQ+ES TGSSTS 
Sbjct: 1  MKLVHKDI-EKDGKGVVVLIPEEAEDMWQAYNIIRKGDRIRASTIRKVQNESATGSSTSH 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTISVES+DFDTQAC+LRLKG
Sbjct: 60 RVRTTLTISVESVDFDTQACLLRLKG 85

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702819|ref|XP_003242018.1| PREDICTED: protein pelota-like isoform 2 [Acyrthosiphon pisum]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKLVHK+I +KD  GVV L+PEE+EDMW AYN+I +GD +RASTIRKVQ+ES TGSSTS 
Sbjct: 1  MKLVHKDI-EKDGKGVVVLIPEEAEDMWQAYNIIRKGDRIRASTIRKVQNESATGSSTSH 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTISVES+DFDTQAC+LRLKG
Sbjct: 60 RVRTTLTISVESVDFDTQACLLRLKG 85

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438391|ref|XP_002067120.1| GK24186 [Drosophila willistoni] gi|194163205|gb|EDW78106.1| GK24186 [Drosophila willistoni]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI+EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGTVTLMPEESEDMWHAYNLISEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VE IDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVEGIDFDTQACVLRLKG 85

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195063312|ref|XP_001996357.1| GH25139 [Drosophila grimshawi] gi|193895222|gb|EDV94088.1| GH25139 [Drosophila grimshawi]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLMPEESEDMWHAYNLIAEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVESIDFDTQACVLRLKG 85

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118951|ref|XP_002003995.1| GI20011 [Drosophila mojavensis] gi|193914570|gb|EDW13437.1| GI20011 [Drosophila mojavensis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V LVPEE EDMWHAYNLI EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLVPEEPEDMWHAYNLIAEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVESIDFDTQACVLRLKG 85

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195147042|ref|XP_002014489.1| GL18928 [Drosophila persimilis] gi|194106442|gb|EDW28485.1| GL18928 [Drosophila persimilis]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLMPEESEDMWHAYNLIAEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VE+IDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVETIDFDTQACVLRLKG 85

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125985205|ref|XP_001356366.1| GA17805 [Drosophila pseudoobscura pseudoobscura] gi|54644689|gb|EAL33429.1| GA17805 [Drosophila pseudoobscura pseudoobscura]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI EGDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLMPEESEDMWHAYNLIAEGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VE+IDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVETIDFDTQACVLRLKG 85

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194765587|ref|XP_001964908.1| GF22793 [Drosophila ananassae] gi|190617518|gb|EDV33042.1| GF22793 [Drosophila ananassae]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI+EGDSVR++TIRKVQ+E+ TGSSTS+
Sbjct: 1  MKLLGKYV-DKGMQGNVTLMPEESEDMWHAYNLISEGDSVRSTTIRKVQNETATGSSTSN 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVESIDFDTQACVLRLKG 85

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339511|ref|XP_002036363.1| GM17647 [Drosophila sechellia] gi|194130243|gb|EDW52286.1| GM17647 [Drosophila sechellia]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ K + DK   G V L+PEESEDMWHAYNLI +GDSVR++TIRKVQ+E+ TGSSTSS
Sbjct: 1  MKLLGKYV-DKGMQGNVTLMPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RVRT LTI+VESIDFDTQACVLRLKG
Sbjct: 60 RVRTTLTIAVESIDFDTQACVLRLKG 85

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
FB|FBgn0011207	395	pelo "pelota" [Drosophila mela	0.934	0.215	0.686	3.6e-25
ZFIN|ZDB-GENE-040426-1074	385	pelo "pelota homolog (Drosophi	0.934	0.220	0.616	6.8e-24
UNIPROTKB|Q9BRX2	385	PELO "Protein pelota homolog"	0.934	0.220	0.639	8.7e-24
UNIPROTKB|Q58DV0	385	PELO "Protein pelota homolog"	0.934	0.220	0.627	2.9e-23
UNIPROTKB|F2Z5N9	385	PELO "Uncharacterized protein"	0.934	0.220	0.627	2.9e-23
RGD|1359591	385	Pelo "pelota homolog (Drosophi	0.934	0.220	0.627	2.9e-23
MGI|MGI:2145154	385	Pelo "pelota homolog (Drosophi	0.934	0.220	0.616	7.8e-23
UNIPROTKB|H9L2N7	361	PELO "Protein pelota homolog"	0.934	0.235	0.593	1e-22
UNIPROTKB|H9L2N8	384	PELO "Protein pelota homolog"	0.934	0.221	0.593	1e-22
UNIPROTKB|Q5ZK01	385	PELO "Protein pelota homolog"	0.934	0.220	0.593	1e-22

FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/86 (68%), Positives = 65/86 (75%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKL+ K + DK   G V LVPEESEDMWHAYNLI +GDSVR++TIRKVQ           
Sbjct:     1 MKLLGKYV-DKGMQGNVTLVPEESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSS 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LTI+VESIDFDTQACVLRLKG
Sbjct:    60 RVRTTLTIAVESIDFDTQACVLRLKG 85

GO:0007283 "spermatogenesis" evidence=NAS;IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0051078 "meiotic nuclear envelope disassembly" evidence=IMP

GO:0048137 "spermatocyte division" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0006412 "translation" evidence=ISS

GO:0008315 "meiotic G2/MI transition" evidence=TAS

GO:0007141 "male meiosis I" evidence=TAS

GO:0048749 "compound eye development" evidence=NAS

GO:0007054 "spindle assembly involved in male meiosis I" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0007067 "mitosis" evidence=NAS

GO:0048132 "female germ-line stem cell division" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/86 (61%), Positives = 65/86 (75%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLVHK+I +KD +G V L+P+E+EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVHKDI-EKDNAGQVTLIPDEAEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSS 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVETIDFDSQACQLRVKG 85

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 55/86 (63%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV KNI +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKNI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/86 (62%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K+I +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/86 (62%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K+I +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/86 (62%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K+I +KD +G V LVPEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/86 (61%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K+I +KD +G V LVPEE EDMWH +NL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDI-EKDNAGQVTLVPEEPEDMWHTFNLVQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             RVRT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RVRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0003674 "molecular_function" evidence=ND

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 51/86 (59%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K++ +KD +G V L+PEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDL-EKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             R+RT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RIRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 51/86 (59%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K++ +KD +G V L+PEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDL-EKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             R+RT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RIRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 51/86 (59%), Positives = 63/86 (73%)

Query:     1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
             MKLV K++ +KD +G V L+PEE EDMWH YNL+  GDS+RASTIRKVQ           
Sbjct:     1 MKLVRKDL-EKDNAGQVTLIPEEPEDMWHTYNLLQVGDSLRASTIRKVQTESSTGSVGSN 59

Query:    61 RVRTMLTISVESIDFDTQACVLRLKG 86
             R+RT LT+ VE+IDFD+QAC LR+KG
Sbjct:    60 RIRTTLTLCVEAIDFDSQACQLRVKG 85

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XIP1	PELO_RAT	3, ., 1, ., -, ., -	0.6976	0.9340	0.2207	yes	N/A
Q5RCE3	PELO_PONAB	3, ., 1, ., -, ., -	0.7093	0.9340	0.2207	yes	N/A
Q80X73	PELO_MOUSE	3, ., 1, ., -, ., -	0.6860	0.9340	0.2207	yes	N/A
Q9BRX2	PELO_HUMAN	3, ., 1, ., -, ., -	0.7093	0.9340	0.2207	yes	N/A
Q5ZK01	PELO_CHICK	3, ., 1, ., -, ., -	0.6627	0.9340	0.2207	yes	N/A
Q7ZWC4	PELO_DANRE	3, ., 1, ., -, ., -	0.6976	0.9340	0.2207	yes	N/A
P48612	PELO_DROME	3, ., 1, ., -, ., -	0.7790	0.9340	0.2151	yes	N/A
Q58DV0	PELO_BOVIN	3, ., 1, ., -, ., -	0.6976	0.9340	0.2207	yes	N/A
Q9USL5	DOM34_SCHPO	3, ., 1, ., -, ., -	0.5116	0.9340	0.2179	yes	N/A
P50444	YNU6_CAEEL	No assigned EC number	0.5930	0.9340	0.2230	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
pfam03463	133	pfam03463, eRF1_1, eRF1 domain 1	8e-26
COG1537	352	COG1537, PelA, Predicted RNA-binding proteins [Gen	7e-21
TIGR00111	351	TIGR00111, pelota, mRNA surveillance protein pelot	2e-13

>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1

 Score = 92.3 bits (230), Expect = 8e-26
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSE--SNTGSST 58
          MKL+ KNI +K   G++ L+PE   D+WH  +LI  GD V + T RK+Q E  +     T
Sbjct: 1  MKLLEKNI-EKYGKGLIKLLPETLGDLWHLISLIIPGDRVISDTTRKLQDEYSNIKSKVT 59

Query: 59 SSRVRTMLTISVESIDFDTQACVLRLKG 86
            RV++ LTI+VE + FD +  +LR  G
Sbjct: 60 RERVQSALTIAVERLKFDPENGLLRFCG 87

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 133

>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only]

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M+++ ++     K GV+ LVPE  +D+WH YN+I +GD V A T R+ +S     S    
Sbjct: 1  MRILEEDK----KRGVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGE 56

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          R+   L I VE I+FD  A  LR+KG
Sbjct: 57 RIPMTLGIKVEKIEFDKFANRLRIKG 82

Length = 352

>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M +V ++ N      V+ L+PE  +D+WH Y +I +GD   A T R+ Q      S  S 
Sbjct: 1  MSIVEESFNKGG--AVIKLLPETLDDLWHLYQIIEKGDVEFAFTKRRTQDLDKIRSDKSK 58

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
               L I VES++FD +   LR KG
Sbjct: 59 DT-VKLGIEVESVEFDMKTERLRYKG 83

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation [Protein synthesis, Translation factors]. Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
TIGR00111	351	pelota probable translation factor pelota. This mo	99.97
KOG2869|consensus	379		99.96
COG1537	352	PelA Predicted RNA-binding proteins [General funct	99.96
PF03463	132	eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do	99.95

>TIGR00111 pelota probable translation factor pelota

Probab=99.97  E-value=1.4e-31  Score=206.20  Aligned_cols=87  Identities=34%  Similarity=0.538  Sum_probs=82.5

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |||++++.  ++++|.|+|+||++||||||||||++||.|+|.|+|+|+++..+|+++ +|++++|+|+||+++|||+++
T Consensus         1 Mki~~~~~--~~~~g~v~l~pe~~dDlw~l~nli~~GD~V~~~T~Rkv~~~~~~g~~~-er~~~~l~i~Ve~ief~~~~~   77 (351)
T TIGR00111         1 MSIVEESF--NKGGAVIKLLPETLDDLWHLYQIIEKGDVEFAFTKRRTQDLDKIRSDK-SKDTVKLGIEVESVEFDMKTE   77 (351)
T ss_pred             Cceeeeec--CCCcEEEEEEeCChHHHHHHHHhCCCCCEEEEEEEEEEeccccCCCcc-eEEEEEEEEEEEEEEecCCCC
Confidence            99999996  677789999999999999999999999999999999999887778877 999999999999999999999


Q ss_pred             eEEEEEEEcc
Q psy14161         81 VLRLKGNCGN   90 (91)
Q Consensus        81 ~Lri~G~i~~   90 (91)
                      +|||+|+|++
T Consensus        78 ~Lri~G~i~~   87 (351)
T TIGR00111        78 RLRYKGVIVT   87 (351)
T ss_pred             EEEEEEEEec
Confidence            9999999975

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.

>KOG2869|consensus

Probab=99.96  E-value=7.3e-29  Score=190.87  Aligned_cols=88  Identities=66%  Similarity=0.955  Sum_probs=85.7

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      ||++++++ .+||+|+|+++||++|||||+||+|++||.|+|.|.|||+.+.++|+++++|++++|+|+||+++||+.++
T Consensus         1 MKli~K~~-~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~   79 (379)
T KOG2869|consen    1 MKLIRKDI-ERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKAC   79 (379)
T ss_pred             Cccchhhh-hcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEEEEEeecccccc
Confidence            99999999 99999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             eEEEEEEEc
Q psy14161         81 VLRLKGNCG   89 (91)
Q Consensus        81 ~Lri~G~i~   89 (91)
                      .||++|+.+
T Consensus        80 ~L~~KGrti   88 (379)
T KOG2869|consen   80 VLRLKGRTI   88 (379)
T ss_pred             EEEEeeeee
Confidence            999999976

>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=190.56  Aligned_cols=87  Identities=40%  Similarity=0.643  Sum_probs=78.6

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |+++.++.    ++|.|+|+||++||||||||+|++||.|.|.|.|+.++....++++++|++|+|+|+||++|||++++
T Consensus         1 M~ile~~~----k~g~I~l~pE~lDDLw~L~~Ii~~GD~v~a~T~Rr~~~~d~~r~~~~eri~m~L~IkVe~ieF~~f~n   76 (352)
T COG1537           1 MRILEEDK----KRGVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGERIPMTLGIKVEKIEFDKFAN   76 (352)
T ss_pred             Ccceeccc----cCceEEEecCChHHHHHHHHhcCCCCEEEEEEEEecccccccccCcceEEEEEEEEEEEEEEeeeccc
Confidence            89999997    69999999999999999999999999999999999332223347778999999999999999999999


Q ss_pred             eEEEEEEEccC
Q psy14161         81 VLRLKGNCGNC   91 (91)
Q Consensus        81 ~Lri~G~i~~~   91 (91)
                      +|||+|+|++|
T Consensus        77 rLRi~G~i~~~   87 (352)
T COG1537          77 RLRIKGPIVEG   87 (352)
T ss_pred             EEEEEEEEEEc
Confidence            99999999875

>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre

Probab=99.95  E-value=9.8e-30  Score=172.95  Aligned_cols=89  Identities=45%  Similarity=0.782  Sum_probs=81.0

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeee-cCCCCccceEEEEEEEEEEEEEeecCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSE-SNTGSSTSSRVRTMLTISVESIDFDTQA   79 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~-~~~g~~~~~r~~~~L~i~Ve~iefd~~~   79 (91)
                      |||+++++ .++++|.|+++||+.||||||||||.+||.|.|.|+|+|+.+ +.+++..++++++.|+|+|++++|+|++
T Consensus         1 Mki~~~~~-~~~~~~~i~ll~e~~dDlw~L~~li~~gD~v~~~t~Rkv~~~~~~~~~~~~~~v~~~L~i~ve~v~~~~~~   79 (132)
T PF03463_consen    1 MKIISKDI-EKNGKGLIKLLPEEKDDLWHLYNLIIPGDEVISKTTRKVQEASNIKGSKTRERVQIALTIKVEKVEFDPEN   79 (132)
T ss_dssp             -EEEEECH-CHHHHHEEEEETTSHHHHHHHHHHEETTTEEEECCHCHHHHCTCESSHHHHHCEEEEEEEEEEEEEEETTT
T ss_pred             Cccchhhh-ccccCceEEEcccccCCcEEEEEEEECCCEEEEEEEEeeeecccccCCcceEEEEEEEEEEEEEeEecCCC
Confidence            99999999 567789999999999999999999999999999999999543 3466777899999999999999999999


Q ss_pred             CeEEEEEEEcc
Q psy14161         80 CVLRLKGNCGN   90 (91)
Q Consensus        80 ~~Lri~G~i~~   90 (91)
                      +.||++|+|+.
T Consensus        80 ~~Lri~G~i~~   90 (132)
T PF03463_consen   80 GLLRISGKIVE   90 (132)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEeEEcc
Confidence            99999999975

The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
3mca_B	390	Structure Of The Dom34-Hbs1 Complex And Implication		2e-16
3oby_A	352	Crystal Structure Of Archaeoglobus Fulgidus Pelota		2e-06
3j15_A	357	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		8e-05

>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
          MKL+ KNI +K+ SG + + PEE EDMWH YN++  GD ++AST+R+V            
Sbjct: 1  MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGS 59
Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
          RV   L I VE++DFDT+A  L +KG
Sbjct: 60 RVVMKLRILVENMDFDTKAAQLHIKG 85

>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXX 60
          M++V +N+  +D  G + L+PE  +D+WH   +I +GD V A+T R  Q           
Sbjct: 1  MQIVEENL--RDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATTKRASQSSDKLRSDKEM 58
Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
           V   L I VE ++F   A  LR+ G
Sbjct: 59 -VTVRLGIEVEKVEFHRFANRLRVSG 83

>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 8  INDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRK-VQXXXXXXXXXXXRVRTML 66
          + +K K G V +  E  +D+WH Y++I  GD V A T+RK  Q            +   L
Sbjct: 4  LEEKPKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFL 63
Query: 67 TISVESIDFDTQACVLRLKG 86
           +  E I+F   A  +R+ G
Sbjct: 64 GVQAEKINFHKFANQVRVTG 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	2e-32
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	4e-30
2vgn_A	386	DOM34; translation termination factor, protein bio	2e-29
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	3e-28
2qi2_A	347	Pelota, cell division protein pelota related prote	5e-28
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	3e-26
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	7e-26

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390

 Score =  114 bits (287), Expect = 2e-32
 Identities = 44/87 (50%), Positives = 61/87 (70%), Gaps = 1/87 (1%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          MKL+ KNI +K+ SG + + PEE EDMWH YN++  GD ++AST+R+V     TGS++ S
Sbjct: 1  MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGS 59

Query: 61 RVRTMLTISVESIDFDTQACVLRLKGN 87
          RV   L I VE++DFDT+A  L +KG 
Sbjct: 60 RVVMKLRILVENMDFDTKAAQLHIKGR 86

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352

 Score =  107 bits (269), Expect = 4e-30
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M++V +N+  +D  G + L+PE  +D+WH   +I +GD V A+T R  QS      S   
Sbjct: 1  MQIVEENL--RDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATTKRASQSSD-KLRSDKE 57

Query: 61 RVRTMLTISVESIDFDTQACVLRLKG 86
           V   L I VE ++F   A  LR+ G
Sbjct: 58 MVTVRLGIEVEKVEFHRFANRLRVSG 83

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386

 Score =  106 bits (265), Expect = 2e-29
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 1  MKLVHKNIN-DKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTS 59
          MK++    +       V+ L+PE+ ED++  Y ++ + D +        + +        
Sbjct: 1  MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKK 58

Query: 60 SRVRTMLTISVESIDFDTQACVLRLKG 86
          S     L I V S DFD +   L+ KG
Sbjct: 59 STDLVKLKIKVISEDFDMKDEYLKYKG 85

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358

 Score =  103 bits (257), Expect = 3e-28
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M++        +K  +V L PE  ED+W     +  GD VR  T R V      GS    
Sbjct: 3  MRVEVL----DNKRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVP----VGSGRKE 54

Query: 61 RVRTMLTISVESIDFDTQACVLRLKGNCGNC 91
          RV   L I ++SI+F      LR+ G     
Sbjct: 55 RVVMTLRIRLDSIEFQPFTGKLRISGIVVEG 85

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347

 Score =  102 bits (255), Expect = 5e-28
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESN-TGSSTS 59
          M+++ +++    K+    +  E  +D+W+  N+++EGD V A T R+V+  ++   S   
Sbjct: 1  MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRER 56

Query: 60 SRVRTMLTISVESIDFDTQACVLRLKGNC 88
           R+   + + VE I+F      LR+ G  
Sbjct: 57 ERIPITIRLKVEKIEFQDFDNRLRILGTV 85

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357

 Score = 97.6 bits (242), Expect = 3e-26
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKV-QSESNTGSSTS 59
          M+++ +    K K G V +  E  +D+WH Y++I  GD V A T+RK  Q   +  +   
Sbjct: 1  MEILEE----KPKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKV 56

Query: 60 SRVRTMLTISVESIDFDTQACVLRLKGNCGNC 91
            +   L +  E I+F   A  +R+ G     
Sbjct: 57 EVIPVFLGVQAEKINFHKFANQVRVTGPIVYA 88

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364

 Score = 97.1 bits (241), Expect = 7e-26
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M+++  +    +K   V L  E  +D+W  + ++ + D V A T R V          S 
Sbjct: 21 MRILEFD----EKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVG-----LGKESR 71

Query: 61 RVRTMLTISVESIDFDTQACVLRLKGN 87
          R+   + + V+  +F      LR+ G 
Sbjct: 72 RIPMTIILKVDYTEFQEFTNRLRIHGI 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	99.97
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	99.97
2qi2_A	347	Pelota, cell division protein pelota related prote	99.97
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	99.97
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	99.97
2vgn_A	386	DOM34; translation termination factor, protein bio	99.97
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	99.96
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	86.35

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.3e-33  Score=215.95  Aligned_cols=89  Identities=49%  Similarity=0.817  Sum_probs=55.8

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |||+++.+ .++++|+|+|+||++||||||||||++||.|+|+|+|+|++++++|+++++|++++|+|+||+++|||+++
T Consensus         1 Mkl~~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~   79 (390)
T 3mca_B            1 MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAA   79 (390)
T ss_dssp             -------C-BCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSS
T ss_pred             Cccccccc-cCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCC
Confidence            99999999 89999999999999999999999999999999999999999988888889999999999999999999999


Q ss_pred             eEEEEEEEcc
Q psy14161         81 VLRLKGNCGN   90 (91)
Q Consensus        81 ~Lri~G~i~~   90 (91)
                      +|||+|+|+.
T Consensus        80 ~Lri~G~i~~   89 (390)
T 3mca_B           80 QLHIKGRTTE   89 (390)
T ss_dssp             CEEEC-CBCS
T ss_pred             EEEEEEEEec
Confidence            9999999975

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}

Probab=99.97  E-value=7.1e-32  Score=207.17  Aligned_cols=88  Identities=33%  Similarity=0.521  Sum_probs=70.3

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |||++++  .++++|.|+|+||++||||||||||++||.|+|.| |||+.+++++...++|++++|+|+||+++|||+++
T Consensus         1 Mki~~~~--~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~   77 (352)
T 3oby_A            1 MQIVEEN--LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFAN   77 (352)
T ss_dssp             CEEEEEC--CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSS
T ss_pred             Cceeeec--cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCC
Confidence            9999999  57899999999999999999999999999999999 99999887874445999999999999999999999


Q ss_pred             eEEEEEEEccC
Q psy14161         81 VLRLKGNCGNC   91 (91)
Q Consensus        81 ~Lri~G~i~~~   91 (91)
                      +|||+|+|+.+
T Consensus        78 ~Lri~G~i~~~   88 (352)
T 3oby_A           78 RLRVSGKIVAG   88 (352)
T ss_dssp             CEEEEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            99999999864

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2

Probab=99.97  E-value=1.3e-31  Score=205.08  Aligned_cols=87  Identities=26%  Similarity=0.473  Sum_probs=68.6

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeec-CCCCccceEEEEEEEEEEEEEeecCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSES-NTGSSTSSRVRTMLTISVESIDFDTQA   79 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~iefd~~~   79 (91)
                      |||+++++    .+|.|+|+||++||||||||||++||.|+|.|+|+|++++ .+|+++++|++++|+|+||+++||+++
T Consensus         1 Mki~~~~~----~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~   76 (347)
T 2qi2_A            1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFD   76 (347)
T ss_dssp             CEEEEEET----TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEE
T ss_pred             CceeEeec----cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCC
Confidence            99999998    4999999999999999999999999999999999999854 556778999999999999999999999


Q ss_pred             CeEEEEEEEccC
Q psy14161         80 CVLRLKGNCGNC   91 (91)
Q Consensus        80 ~~Lri~G~i~~~   91 (91)
                      ++||++|.|+.|
T Consensus        77 ~~Lri~G~vv~~   88 (347)
T 2qi2_A           77 NRLRILGTVIEG   88 (347)
T ss_dssp             EEEEECC-----
T ss_pred             CEEecceEEEEc
Confidence            999999999876

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}

Probab=99.97  E-value=1.9e-30  Score=198.76  Aligned_cols=81  Identities=35%  Similarity=0.485  Sum_probs=77.2

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |||+++++    .+|+|+|+||++||||||||||++||.|+|.|+|+|++    |+.+++|++++|+|+||+++|||+++
T Consensus         3 Mki~~~~~----~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~   74 (358)
T 3agj_B            3 MRVEVLDN----KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTG   74 (358)
T ss_dssp             CEEEECSS----SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSC
T ss_pred             CEEEEeec----cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCC
Confidence            99999998    49999999999999999999999999999999999986    66678999999999999999999999


Q ss_pred             eEEEEEEEc
Q psy14161         81 VLRLKGNCG   89 (91)
Q Consensus        81 ~Lri~G~i~   89 (91)
                      .|||+|+|+
T Consensus        75 ~Lri~G~i~   83 (358)
T 3agj_B           75 KLRISGIVV   83 (358)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999986

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=3e-32  Score=208.97  Aligned_cols=87  Identities=28%  Similarity=0.493  Sum_probs=82.0

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCC-CCccceEEEEEEEEEEEEEeecCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNT-GSSTSSRVRTMLTISVESIDFDTQA   79 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~iefd~~~   79 (91)
                      |||++++.    ++|+|+|+||++||||||||||++||.|+|+|+|+|++++++ ++++++|++++|+|+||+++||+++
T Consensus         1 Mki~~~~~----~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~   76 (357)
T 3j15_A            1 MEILEEKP----KEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFA   76 (357)
T ss_dssp             CCCEECST----TSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTT
T ss_pred             CceeEecC----CCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCC
Confidence            99999884    899999999999999999999999999999999999998876 4778899999999999999999999


Q ss_pred             CeEEEEEEEccC
Q psy14161         80 CVLRLKGNCGNC   91 (91)
Q Consensus        80 ~~Lri~G~i~~~   91 (91)
                      ++|||+|+|+.+
T Consensus        77 ~~Lri~G~i~~~   88 (357)
T 3j15_A           77 NQVRVTGPIVYA   88 (357)
T ss_dssp             TEEEECCBEEEC
T ss_pred             CEEEEEEEEEec
Confidence            999999999864

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*

Probab=99.97  E-value=1.1e-30  Score=201.95  Aligned_cols=86  Identities=27%  Similarity=0.413  Sum_probs=70.8

Q ss_pred             CeeEeec---ccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecC
Q psy14161          1 MKLVHKN---INDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDT   77 (91)
Q Consensus         1 MKi~~~~---~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~   77 (91)
                      |||++++   + ++ ++|+|+|+||++||||||||||++||.|+|+|+|+|++ +++|+ +++|++++|+|+||+++|||
T Consensus         1 Mki~~~~~~~~-~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~   76 (386)
T 2vgn_A            1 MKVISLKKDSF-NK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDM   76 (386)
T ss_dssp             CEEEEEEECSS-CT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEET
T ss_pred             Ceeeeeccccc-cC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecC
Confidence            9999999   7 77 88999999999999999999999999999999999998 66777 88999999999999999999


Q ss_pred             CCCeEEEEEEEcc
Q psy14161         78 QACVLRLKGNCGN   90 (91)
Q Consensus        78 ~~~~Lri~G~i~~   90 (91)
                      ++++|||+|+|+.
T Consensus        77 ~~~~lri~G~i~~   89 (386)
T 2vgn_A           77 KDEYLKYKGVTVT   89 (386)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             CCCEEEEEEEEEc
Confidence            9999999999974

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}

Probab=99.96  E-value=3.8e-30  Score=198.18  Aligned_cols=82  Identities=26%  Similarity=0.408  Sum_probs=69.7

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~~~   80 (91)
                      |||++++.    ++|+|+|+||++||||||||||++||.|+|+|+|+|+.    |+ +++|++++|+|+||++||||+++
T Consensus        21 Mki~~~~~----~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~Ve~ief~~~~~   91 (364)
T 3obw_A           21 MRILEFDE----KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILKVDYTEFQEFTN   91 (364)
T ss_dssp             ------CC----CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTT
T ss_pred             cEEEEecC----CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEEEEEEEecCCCC
Confidence            99999886    89999999999999999999999999999999999974    22 56999999999999999999999


Q ss_pred             eEEEEEEEccC
Q psy14161         81 VLRLKGNCGNC   91 (91)
Q Consensus        81 ~Lri~G~i~~~   91 (91)
                      +|||+|+|+.+
T Consensus        92 ~Lri~G~iv~~  102 (364)
T 3obw_A           92 RLRIHGIIEDA  102 (364)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            99999999864

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A

Probab=86.35  E-value=0.0004  Score=53.87  Aligned_cols=60  Identities=10%  Similarity=0.024  Sum_probs=45.5

Q ss_pred             hhhhhhcCCCEEEEEeeEEEeee--cCCCCccceEEEEEEEEEEEEEee-----cCCCCeEEEEEEE
Q psy14161         29 HAYNLITEGDSVRASTIRKVQSE--SNTGSSTSSRVRTMLTISVESIDF-----DTQACVLRLKGNC   88 (91)
Q Consensus        29 ~lynli~~GD~V~a~T~Rkv~~~--~~~g~~~~~r~~~~L~i~Ve~ief-----d~~~~~Lri~G~i   88 (91)
                      .+|++|.|||.|.+.|.|++...  +++...+.+|..+.++|.++..+|     .|..+.+.+.|.+
T Consensus        34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~  100 (437)
T 1dt9_A           34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTI  100 (437)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEE
T ss_pred             EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCcc
Confidence            36889999999999999987542  122223678999999999999999     5666777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d2qi2a1	126	b.38.4.1 (A:1-126) Cell division protein pelota {T	6e-30
d2vgna1	135	b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae	3e-29

>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  100 bits (252), Expect = 6e-30
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 1  MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSS 60
          M+++ +++    K+    +  E  +D+W+  N+++EGD V A T R+V+  ++   S   
Sbjct: 1  MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRER 56

Query: 61 RVRTM-LTISVESIDFDTQACVLRLKG 86
              + + + VE I+F      LR+ G
Sbjct: 57 ERIPITIRLKVEKIEFQDFDNRLRILG 83

>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 99.1 bits (247), Expect = 3e-29
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 1  MKLVHKNIN-DKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTS 59
          MK++    +       V+ L+PE+ ED++  Y ++ + D +        + +        
Sbjct: 1  MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKK 58

Query: 60 SRVRTMLTISVESIDFDTQACVLRLKG 86
          S     L I V S DFD +   L+ KG
Sbjct: 59 STDLVKLKIKVISEDFDMKDEYLKYKG 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d2qi2a1	126	Cell division protein pelota {Thermoplasma acidoph	100.0
d2vgna1	135	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	100.0

>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.3e-35  Score=199.42  Aligned_cols=87  Identities=26%  Similarity=0.490  Sum_probs=68.4

Q ss_pred             CeeEeecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCC-CccceEEEEEEEEEEEEEeecCCC
Q psy14161          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTG-SSTSSRVRTMLTISVESIDFDTQA   79 (91)
Q Consensus         1 MKi~~~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g-~~~~~r~~~~L~i~Ve~iefd~~~   79 (91)
                      |||+++++    .+|.++|.||++||||||||||++||.|+|.|+|||+++++++ +++++|++++|+|+||+++|||++
T Consensus         1 Mkil~~~~----~~g~v~L~~E~~dDLW~L~nli~~GD~V~~~T~Rkv~~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~   76 (126)
T d2qi2a1           1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFD   76 (126)
T ss_dssp             CEEEEEET----TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEE
T ss_pred             CceeEEec----CCCeEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEeeccCCCCccceeEEEEEEEEEEEEEEEecCCC
Confidence            99999998    6699999999999999999999999999999999999887766 677899999999999999999999


Q ss_pred             CeEEEEEEEccC
Q psy14161         80 CVLRLKGNCGNC   91 (91)
Q Consensus        80 ~~Lri~G~i~~~   91 (91)
                      +.|||+|+|+.+
T Consensus        77 ~~LRi~G~i~~~   88 (126)
T d2qi2a1          77 NRLRILGTVIEG   88 (126)
T ss_dssp             EEEEECC-----
T ss_pred             CEEEEeeEEeeC
Confidence            999999999753

>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=190.42  Aligned_cols=87  Identities=25%  Similarity=0.369  Sum_probs=70.2

Q ss_pred             CeeEe--ecccCCCCCeeEEEeeCCCchhhhhhhhhcCCCEEEEEeeEEEeeecCCCCccceEEEEEEEEEEEEEeecCC
Q psy14161          1 MKLVH--KNINDKDKSGVVALVPEESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ   78 (91)
Q Consensus         1 MKi~~--~~~~~k~~~g~i~l~pE~~dDlW~lynli~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~iefd~~   78 (91)
                      |||++  ++. ..+++|.|+|+||++||||||||||++||.|+|.|.|+++.++.  +.+++|++++|+|+||+++||++
T Consensus         1 Mkli~~~k~~-~~~~~g~v~l~pE~~dDLW~LynlI~~GD~V~~~t~R~~~~~~~--~~~~er~~~~L~I~Ve~~ef~~~   77 (135)
T d2vgna1           1 MKVISLKKDS-FNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDEA--GKKKSTDLVKLKIKVISEDFDMK   77 (135)
T ss_dssp             CEEEEEEECS-SCTTCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETT
T ss_pred             CeeEEeeccc-ccCCceEEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEecCCC--CccEEEEEEEEEEEEEEEEeecC
Confidence            99998  555 67789999999999999999999999999999999999987553  34578999999999999999999


Q ss_pred             CCeEEEEEEEcc
Q psy14161         79 ACVLRLKGNCGN   90 (91)
Q Consensus        79 ~~~Lri~G~i~~   90 (91)
                      ++.|||+|+|+.
T Consensus        78 ~~~LRi~G~iv~   89 (135)
T d2vgna1          78 DEYLKYKGVTVT   89 (135)
T ss_dssp             TTEEEEEEEECC
T ss_pred             CCEEEEeeeEEe
Confidence            999999999975