Psyllid ID: psy14162

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MIDRGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFHS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHccccEEEEEEEc
Coil and Loop (DISEMBL)
midrgaedgklmweGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLlaspgfvkdKFFEYMFQVFtsqqakspsvqliskfqycffhs
Flexible Loop (DISEMBL)
midrgaedgklmwegdVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTsqqakspsvQLISKFQYCFFHS
Low Complexity Region (SEG)
MIDRGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFHS
Disordered region (IsUnstruct)
***********MWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFF**
Disordered Region (DISOPRED)
*********************KALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVF***********LISKFQYCFFHS
Disordered Region (DISEMBL)
MIDRGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFHS
Disordered Region (DISPRO)
******EDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFHS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIDRGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFHS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
P48612	395	Protein pelota OS=Drosoph	yes	N/A	0.577	0.131	0.711	3e-18
Q7ZWC4	385	Protein pelota homolog OS	yes	N/A	0.666	0.155	0.616	3e-17
Q5U567	383	Protein pelota homolog OS	N/A	N/A	0.655	0.154	0.593	2e-15
Q5ZK01	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.596	8e-15
Q80X73	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.596	8e-15
Q5XIP1	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.576	1e-14
Q58DV0	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.596	1e-14
Q5RCE3	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.576	1e-14
Q9BRX2	385	Protein pelota homolog OS	yes	N/A	0.577	0.135	0.557	3e-14
P50444	381	Uncharacterized protein R	yes	N/A	0.644	0.152	0.430	3e-09

>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 47/52 (90%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G V+QHEK L +FY+ VMQ ILRHVNFD+VKCVL+ASPGFV+D+F++YMFQ
Sbjct: 172 KGSVQQHEKGLAKFYEQVMQSILRHVNFDVVKCVLIASPGFVRDQFYDYMFQ 223

Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 46/60 (76%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G   QH+KAL RFY+ VMQGILRH NFD+VKC+L+ASPGFVKD+F  Y+F+    Q  K
Sbjct: 172 KGSCTQHDKALERFYEAVMQGILRHFNFDVVKCILVASPGFVKDQFISYLFKEAVRQDCK 231

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           G+  QHEKAL +FY+ VMQGILRH+NFD+VK VL+ASPGFV+++F E++F     Q  K
Sbjct: 173 GNCTQHEKALEKFYEQVMQGILRHINFDVVKVVLVASPGFVREQFCEFLFLRAVKQDLK 231

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

Required for normal chromosome segregation during cell division and genomic stability. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH+NF++VKC+L+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQ 223

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH++FD+VKCVL+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCVLVASPGFVREQFCDYMFQ 223

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH++FD+VKC+L+ASPGFV+++F +YMFQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYMFQ 223

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 45/52 (86%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+  QH++AL RFY+ V+Q I RH++FD+VKC+L+ASPGFV+++F +Y+FQ
Sbjct: 172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQ 223

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 7/65 (10%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMF-------QV 66
           +G   QHEK L +FY+ V    +RHVN  +VKCV++AS GFVKD F +++        + 
Sbjct: 172 KGFTSQHEKGLEKFYEAVSTAFMRHVNLQVVKCVIVASRGFVKDAFMQHLIAHADANGKK 231

Query: 67  FTSQQ 71
           FT++Q
Sbjct: 232 FTTEQ 236

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
350411930	537	PREDICTED: LOW QUALITY PROTEIN: protein	0.811	0.135	0.589	1e-18
289743045	390	meiotic cell division protein Pelota/DOm	0.8	0.184	0.582	1e-18
328780285	536	PREDICTED: protein pelota isoform 1 [Api	0.577	0.097	0.769	2e-18
340711355	537	PREDICTED: LOW QUALITY PROTEIN: protein	0.811	0.135	0.589	2e-18
380030333	536	PREDICTED: protein pelota-like [Apis flo	0.577	0.097	0.75	2e-18
312385246	938	hypothetical protein AND_00999 [Anophele	0.577	0.055	0.75	3e-18
157117107	386	pelota [Aedes aegypti] gi|108876194|gb|E	0.822	0.191	0.584	5e-18
242018113	382	protein pelota, putative [Pediculus huma	0.822	0.193	0.571	6e-18
91095145	383	PREDICTED: similar to pelota [Tribolium	0.788	0.185	0.554	1e-17
170040089	386	pelota [Culex quinquefasciatus] gi|16786	0.811	0.189	0.576	1e-17

>gi|350411930|ref|XP_003489492.1| PREDICTED: LOW QUALITY PROTEIN: protein pelota-like [Bombus impatiens]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 5/78 (6%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+V QHEK L RFYDN+MQGILRH+NFDIVKC++LASPGFVKD+F +YM Q    Q  K
Sbjct: 322 KGNVSQHEKGLTRFYDNIMQGILRHINFDIVKCIILASPGFVKDQFMDYMIQ----QAIK 377

Query: 74  SPS-VQLISKFQYCFFHS 90
           S + + L +K ++   HS
Sbjct: 378 SDNKIVLENKSKFLLVHS 395

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743045|gb|ADD20270.1| meiotic cell division protein Pelota/DOm34 [Glossina morsitans morsitans]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 7/79 (8%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+++QHEK L +FY+NVMQ ILRHVNFDIVKCV+LASPGFV+D+FFEYMF     QQA 
Sbjct: 172 KGNIQQHEKGLAKFYENVMQSILRHVNFDIVKCVILASPGFVRDQFFEYMF-----QQAV 226

Query: 74  SPSVQLI--SKFQYCFFHS 90
              ++L+  +K ++   HS
Sbjct: 227 KLDIKLLLDNKGKFMLVHS 245

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780285|ref|XP_623614.2| PREDICTED: protein pelota isoform 1 [Apis mellifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/52 (76%), Positives = 47/52 (90%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+V QHEK L RFYDN+MQGILRHVNFDIVKC++LASPGFVKD+F +YM Q
Sbjct: 321 KGNVSQHEKGLTRFYDNIMQGILRHVNFDIVKCIILASPGFVKDQFMDYMIQ 372

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711355|ref|XP_003394242.1| PREDICTED: LOW QUALITY PROTEIN: protein pelota-like [Bombus terrestris]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 5/78 (6%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+V QHEK L RFYDN+MQGILRH+NFDIVKC++LASPGFVKD+F +YM Q    Q  K
Sbjct: 322 KGNVSQHEKGLTRFYDNIMQGILRHINFDIVKCIILASPGFVKDQFMDYMIQ----QAIK 377

Query: 74  SPS-VQLISKFQYCFFHS 90
           S + + L +K ++   HS
Sbjct: 378 SDNKIVLENKGKFLLVHS 395

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030333|ref|XP_003698803.1| PREDICTED: protein pelota-like [Apis florea]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 47/52 (90%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G+V QHEK L RFYDN+MQGILRH+NFDIVKC++LASPGFVKD+F +YM Q
Sbjct: 321 KGNVSQHEKGLTRFYDNIMQGILRHINFDIVKCIILASPGFVKDQFMDYMIQ 372

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385246|gb|EFR29795.1| hypothetical protein AND_00999 [Anopheles darlingi]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 48/52 (92%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +G V+QHEK L +FY+ VMQGILRHVNFD+VKC+L+ASPGFVKD+F+EYMFQ
Sbjct: 728 KGFVQQHEKGLTKFYEAVMQGILRHVNFDVVKCILVASPGFVKDQFYEYMFQ 779

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117107|ref|XP_001658703.1| pelota [Aedes aegypti] gi|108876194|gb|EAT40419.1| AAEL007854-PA [Aedes aegypti]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 3/77 (3%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+V+QHEK L +FYD V+QGI+RHVNF++VKCVL+ASPGFVKD+FFEYMFQ       K
Sbjct: 172 KGNVQQHEKGLAKFYDAVIQGIIRHVNFEVVKCVLIASPGFVKDQFFEYMFQQAVKTDNK 231

Query: 74  SPSVQLISKFQYCFFHS 90
              V L +K ++   HS
Sbjct: 232 ---VLLDNKSKFMLVHS 245

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018113|ref|XP_002429525.1| protein pelota, putative [Pediculus humanus corporis] gi|212514473|gb|EEB16787.1| protein pelota, putative [Pediculus humanus corporis]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 3/77 (3%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+V+QHEK L +F++NVMQGILRHVNFD+VKCVL+ASPGFVKD+FFE+M Q       K
Sbjct: 173 KGNVQQHEKGLTKFFENVMQGILRHVNFDVVKCVLIASPGFVKDQFFEFMIQQAVKNDNK 232

Query: 74  SPSVQLISKFQYCFFHS 90
              + L +K ++   HS
Sbjct: 233 ---ILLENKGKFVLVHS 246

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91095145|ref|XP_967126.1| PREDICTED: similar to pelota [Tribolium castaneum] gi|270015752|gb|EFA12200.1| pelota [Tribolium castaneum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 58/74 (78%), Gaps = 3/74 (4%)

Query: 17  VKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPS 76
           ++QHEKAL +FYDN++QGILRH++FDIVKCV++ASPGFV+D+F+EYMFQ+      K+  
Sbjct: 175 IQQHEKALAKFYDNIIQGILRHIDFDIVKCVIIASPGFVRDQFYEYMFQMAVKTDNKT-- 232

Query: 77  VQLISKFQYCFFHS 90
             L +K ++   HS
Sbjct: 233 -LLENKSKFMLIHS 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040089|ref|XP_001847844.1| pelota [Culex quinquefasciatus] gi|167863656|gb|EDS27039.1| pelota [Culex quinquefasciatus]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%), Gaps = 5/78 (6%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           +G+V QHEK L +FYD+++Q I+RHVNFD+VKCVLLASPGFVKD+FFEYMFQ    Q  K
Sbjct: 172 KGNVAQHEKGLAKFYDSLIQSIIRHVNFDVVKCVLLASPGFVKDQFFEYMFQ----QAVK 227

Query: 74  SPSVQLI-SKFQYCFFHS 90
           + +  L+ +K ++   HS
Sbjct: 228 TDNKGLLENKGKFMLVHS 245

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
FB|FBgn0011207	395	pelo "pelota" [Drosophila mela	0.822	0.187	0.532	1.3e-17
ZFIN|ZDB-GENE-040426-1074	385	pelo "pelota homolog (Drosophi	0.822	0.192	0.519	2.7e-16
UNIPROTKB|F2Z5N9	385	PELO "Uncharacterized protein"	0.577	0.135	0.615	1.2e-14
UNIPROTKB|H9L2N7	361	PELO "Protein pelota homolog"	0.577	0.144	0.596	3.6e-14
UNIPROTKB|H9L2N8	384	PELO "Protein pelota homolog"	0.577	0.135	0.596	4.4e-14
UNIPROTKB|Q5ZK01	385	PELO "Protein pelota homolog"	0.577	0.135	0.596	4.4e-14
MGI|MGI:2145154	385	Pelo "pelota homolog (Drosophi	0.577	0.135	0.596	4.4e-14
UNIPROTKB|Q58DV0	385	PELO "Protein pelota homolog"	0.577	0.135	0.596	5.7e-14
RGD|1359591	385	Pelo "pelota homolog (Drosophi	0.577	0.135	0.576	5.7e-14
UNIPROTKB|Q9BRX2	385	PELO "Protein pelota homolog"	0.577	0.135	0.557	1.6e-13

FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 41/77 (53%), Positives = 56/77 (72%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
             +G V+QHEK L +FY+ VMQ ILRHVNFD+VKCVL+ASPGFV+D+F++YMFQ       K
Sbjct:   172 KGSVQQHEKGLAKFYEQVMQSILRHVNFDVVKCVLIASPGFVRDQFYDYMFQQAVKMDYK 231

Query:    74 SPSVQLISKFQYCFFHS 90
                + L +K ++   H+
Sbjct:   232 ---LLLDNKSKFMLVHA 245

GO:0007283 "spermatogenesis" evidence=NAS;IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0051078 "meiotic nuclear envelope disassembly" evidence=IMP

GO:0048137 "spermatocyte division" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0006412 "translation" evidence=ISS

GO:0008315 "meiotic G2/MI transition" evidence=TAS

GO:0007141 "male meiosis I" evidence=TAS

GO:0048749 "compound eye development" evidence=NAS

GO:0007054 "spindle assembly involved in male meiosis I" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0007067 "mitosis" evidence=NAS

GO:0048132 "female germ-line stem cell division" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
             +G   QH+KAL RFY+ VMQGILRH NFD+VKC+L+ASPGFVKD+F  Y+F+    Q  K
Sbjct:   172 KGSCTQHDKALERFYEAVMQGILRHFNFDVVKCILVASPGFVKDQFISYLFKEAVRQDCK 231

Query:    74 SPSVQLISKFQYCFFHS 90
                + L ++ ++   HS
Sbjct:   232 ---LLLENRSKFMVVHS 245

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 32/52 (61%), Positives = 46/52 (88%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+QGI RH++FD+VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQGIQRHIHFDVVKCVLVASPGFVREQFCDYMFQ 223

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH+NF++VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASPGFVREQFCDYMFQ 223

GO:0003674 "molecular_function" evidence=ND

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 31/52 (59%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH++FD+VKCVL+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCVLVASPGFVREQFCDYMFQ 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 30/52 (57%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH+NF++VKC+L+ASPGFV+++F +YMFQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQ 223

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 29/52 (55%), Positives = 45/52 (86%)

Query:    14 EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
             +G+  QH++AL RFY+ V+Q I RH++FD+VKC+L+ASPGFV+++F +Y+FQ
Sbjct:   172 KGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQ 223

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZWC4	PELO_DANRE	3, ., 1, ., -, ., -	0.6166	0.6666	0.1558	yes	N/A
Q5XIP1	PELO_RAT	3, ., 1, ., -, ., -	0.5769	0.5777	0.1350	yes	N/A
Q9BRX2	PELO_HUMAN	3, ., 1, ., -, ., -	0.5576	0.5777	0.1350	yes	N/A
Q5ZK01	PELO_CHICK	3, ., 1, ., -, ., -	0.5961	0.5777	0.1350	yes	N/A
Q5RCE3	PELO_PONAB	3, ., 1, ., -, ., -	0.5769	0.5777	0.1350	yes	N/A
Q80X73	PELO_MOUSE	3, ., 1, ., -, ., -	0.5961	0.5777	0.1350	yes	N/A
P48612	PELO_DROME	3, ., 1, ., -, ., -	0.7115	0.5777	0.1316	yes	N/A
Q58DV0	PELO_BOVIN	3, ., 1, ., -, ., -	0.5961	0.5777	0.1350	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
pfam03464	129	pfam03464, eRF1_2, eRF1 domain 2	6e-10
TIGR00111	351	TIGR00111, pelota, mRNA surveillance protein pelot	2e-04

>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2

 Score = 51.5 bits (124), Expect = 6e-10
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
          E+    FY  V +   ++ + D VK ++LA PGF K++F++  + 
Sbjct: 47 EEKRHEFYRKVAEAANQYFDKDNVKGIILAGPGFTKNEFYDSDYL 91

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 129

>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 2   IDRGAEDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFE 61
            +    +  +  +    +  +    FY  + + +L   NFD +K +++A PGF K+ F++
Sbjct: 157 EEIQKIEYHMPGKKRTLKFGELRKEFYKEIAKKLL---NFDDLKTIIVAGPGFYKNDFYD 213

Query: 62  YMFQ 65
           ++F+
Sbjct: 214 FIFE 217

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation [Protein synthesis, Translation factors]. Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
KOG2869|consensus	379		99.89
PF03464	133	eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do	99.72
TIGR00111	351	pelota probable translation factor pelota. This mo	99.43
COG1537	352	PelA Predicted RNA-binding proteins [General funct	98.77
PRK04011	411	peptide chain release factor 1; Provisional	98.76
TIGR03676	403	aRF1/eRF1 peptide chain release factor 1, archaeal	98.72
TIGR00108	409	eRF peptide chain release factor eRF/aRF, subunit	98.67
COG1503	411	eRF1 Peptide chain release factor 1 (eRF1) [Transl	93.45
PF03485	85	Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina	84.34

>KOG2869|consensus

Probab=99.89  E-value=2.8e-23  Score=164.39  Aligned_cols=80  Identities=49%  Similarity=0.747  Sum_probs=75.1

Q ss_pred             Cccccc-chhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEeee
Q psy14162         10 KLMWEG-DVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFF   88 (90)
Q Consensus        10 ~~~r~~-~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~~   88 (90)
                      =|||++ ..++||+++++||++|+++|.+|+||+.|+|+|||||||++++|++||+++|.+.++|.++ .|++||+.+|+
T Consensus       167 iPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il-~nk~kf~~~h~  245 (379)
T KOG2869|consen  167 IPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLIL-ENKSKFPLVHA  245 (379)
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhh-hcccceeEEec
Confidence            466654 6889999999999999999999999999999999999999999999999999999999997 99999999998


Q ss_pred             cC
Q psy14162         89 HS   90 (90)
Q Consensus        89 ~~   90 (90)
                      .|
T Consensus       246 ss  247 (379)
T KOG2869|consen  246 SS  247 (379)
T ss_pred             CC
Confidence            64

>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre

Probab=99.72  E-value=2.1e-17  Score=113.54  Aligned_cols=72  Identities=31%  Similarity=0.532  Sum_probs=60.2

Q ss_pred             Ccccc--cchhHH----HHHHHHHHHHHHHHHHhc--cccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccC
Q psy14162         10 KLMWE--GDVKQH----EKALVRFYDNVMQGILRH--VNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLIS   81 (90)
Q Consensus        10 ~~~r~--~~~s~~----dKal~kFf~~v~~al~r~--vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~ks   81 (90)
                      -|+|+  |+++++    ++++++||++|++++.++  ++++.+++||||||||+|++|++|+.+++++.+        +.
T Consensus        32 ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~k~~f~~~l~~~~~~~~--------~~  103 (133)
T PF03464_consen   32 IPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPGFTKEEFYKYLKAEARRKD--------KK  103 (133)
T ss_dssp             HCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEESTTHHHHHHHHHHHHHHHHT--------CC
T ss_pred             CCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCHHHHHHHHHHHHHhhHhhc--------CC
Confidence            35564  345565    999999999999999999  899999999999999999999999999999877        24


Q ss_pred             ceEEeeec
Q psy14162         82 KFQYCFFH   89 (90)
Q Consensus        82 kfv~~~~~   89 (90)
                      +++++|+.
T Consensus       104 ~i~~~~~s  111 (133)
T PF03464_consen  104 KIVVVDTS  111 (133)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEEECC
Confidence            56666653

The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....

>TIGR00111 pelota probable translation factor pelota

Probab=99.43  E-value=2.1e-13  Score=107.13  Aligned_cols=63  Identities=22%  Similarity=0.513  Sum_probs=53.8

Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcc
Q psy14162         10 KLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPS   76 (90)
Q Consensus        10 ~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~   76 (90)
                      -|+|+.+ +.+++++++||++|+++|   .+|++++|||||||||+|++|++||.+++++..++.+.
T Consensus       166 iP~K~~~-~~~e~~~~~Ff~~v~~~l---~~~~~v~~iIiaGPGf~k~~f~~~l~~~~~~~~~k~ii  228 (351)
T TIGR00111       166 MPGKKRT-LKFGELRKEFYKEIAKKL---LNFDDLKTIIVAGPGFYKNDFYDFIFERYPEEANKAVL  228 (351)
T ss_pred             CCCCccc-chhHHHHHHHHHHHHHHH---hhhcccCEEEEECCHHHHHHHHHHHHHHhhhhhCCcEE
Confidence            4555543 679999999999999998   46789999999999999999999999999887776653

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.

>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]

Probab=98.77  E-value=1.4e-08  Score=81.12  Aligned_cols=45  Identities=18%  Similarity=0.600  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCC
Q psy14162         25 VRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQA   72 (90)
Q Consensus        25 ~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~   72 (90)
                      .+||..|+++|.+..   ++..||||||||+|++|++|+.+.++...+
T Consensus       176 ~k~~~~i~~~~~~~~---~~~~iIvaGPGF~k~~~~~~~~~~~p~~~~  220 (352)
T COG1537         176 RKFFDEIAKALKEYA---NLDIIIVAGPGFAKEDFYDFLRERYPELAN  220 (352)
T ss_pred             HHHHHHHHHHHHHhh---CCCeEEEeCCchHHHHHHHHHHHhcccccc
Confidence            899999999999986   688999999999999999999999986554

>PRK04011 peptide chain release factor 1; Provisional

Probab=98.76  E-value=1.4e-08  Score=81.66  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccc---cCcccEEEEeCCCccHHHHHH--HHHHHhc
Q psy14162         20 HEKALVRFYDNVMQGILRHVN---FDIVKCVLLASPGFVKDKFFE--YMFQVFT   68 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~vd---F~~vk~VIIAsPGF~Kd~F~k--yl~~~a~   68 (90)
                      ++++..+||+.|++++.+++.   +..+++||||||||+|++|.+  ||..+..
T Consensus       190 ~e~~~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg~~K~~f~~~~~L~~~l~  243 (411)
T PRK04011        190 IEQAAHEFYKRVGEKANEAFLPLLEGKLKGILIGGPGPTKEEFLEGDYLHYELK  243 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECChhHHHHHhhhhhhhHHHH
Confidence            589999999999999977743   688999999999999999999  9988754

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms

Probab=98.72  E-value=2.5e-08  Score=80.15  Aligned_cols=48  Identities=27%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHhc----cccCcccEEEEeCCCccHHHHHH--HHHHHhc
Q psy14162         20 HEKALVRFYDNVMQGILRH----VNFDIVKCVLLASPGFVKDKFFE--YMFQVFT   68 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~----vdF~~vk~VIIAsPGF~Kd~F~k--yl~~~a~   68 (90)
                      ++++..+||+.|++++.+.    .++ ++++||||||||+|++|++  ||..+..
T Consensus       182 ~e~~~~~f~~~Vae~~~~~f~~~~~~-~v~~lILaGpg~~K~~f~~~~~L~~~l~  235 (403)
T TIGR03676       182 IEIAAHEFYKRVGEAANEAFLPLKDK-KLKGILIGGPGPTKEEFAEGDYLHHELK  235 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccc-cccEEEEeCCHHHHHHHhhhhhhhHHHH
Confidence            7899999999999996554    455 6999999999999999999  9987543

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.

>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1

Probab=98.67  E-value=3.7e-08  Score=79.14  Aligned_cols=48  Identities=25%  Similarity=0.415  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcc----ccCcccEEEEeCCCccHHHHHH--HHHHHhc
Q psy14162         20 HEKALVRFYDNVMQGILRHV----NFDIVKCVLLASPGFVKDKFFE--YMFQVFT   68 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~v----dF~~vk~VIIAsPGF~Kd~F~k--yl~~~a~   68 (90)
                      ++.+..+||+.|++.+.+++    ++ .+++||||||||+|++|.+  ||..+..
T Consensus       186 ~e~~~~~f~~~Vae~~~~~f~~~~~~-~v~~IIlaGpg~~K~~f~~~~~l~~~l~  239 (409)
T TIGR00108       186 RELAAHEFLKKVGEVANEAFLPNDDV-KLKGIILGGPGHTKEEFAEGEYLHHELK  239 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccc-cceEEEEeccHHHHHHhhhhhhHHHHhh
Confidence            58899999999999887773    44 7999999999999999998  8866554

Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.

>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]

Probab=93.45  E-value=0.11  Score=42.74  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHhcccc---CcccEEEEeCCCccHHHHHH--HHHHH
Q psy14162         21 EKALVRFYDNVMQGILRHVNF---DIVKCVLLASPGFVKDKFFE--YMFQV   66 (90)
Q Consensus        21 dKal~kFf~~v~~al~r~vdF---~~vk~VIIAsPGF~Kd~F~k--yl~~~   66 (90)
                      +-+-..||..|.+....++.-   .+++.|||+|||-+|++|++  ||-..
T Consensus       190 ee~~h~f~k~vge~A~e~f~~~~~~~~kgIilgGp~~tk~ef~e~~yL~~~  240 (411)
T COG1503         190 EEAAHEFYKKVGEAASEAFLPIAKKELKGIILGGPGPTKEEFVEGDYLHHE  240 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhhhcceEeeCCcccchhhhcccccchH
Confidence            344459999999998887641   14788999999999999998  66443

>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6

Probab=84.34  E-value=1.5  Score=27.49  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=18.2

Q ss_pred             HHHHHHHHhccccCc-ccEEEEeCCCcc
Q psy14162         29 DNVMQGILRHVNFDI-VKCVLLASPGFV   55 (90)
Q Consensus        29 ~~v~~al~r~vdF~~-vk~VIIAsPGF~   55 (90)
                      .+|++.|..++.-+. ++.|=++||||+
T Consensus        54 ~~iA~~i~~~l~~~~~i~~vev~gpGFi   81 (85)
T PF03485_consen   54 REIAEEIAEKLEKSPIIEKVEVAGPGFI   81 (85)
T ss_dssp             HHHHHHHHHCHCTTTTEEEEEEETTTEE
T ss_pred             HHHHHHHHHhcCCCCCEEEEEEcCCcEE
Confidence            345555555544333 889999999996

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
3mca_B	390	Structure Of The Dom34-Hbs1 Complex And Implication		3e-08

>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74
           GD   ++K L +FYD+V Q I    +FD +K V+LASPGFV    ++Y+F +      K 
Sbjct: 173 GDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLK- 231
Query: 75  PSVQLI-SKFQYCFFHS 90
              Q++ SK ++   HS
Sbjct: 232 ---QIVKSKNKFVILHS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
2vgn_A	386	DOM34; translation termination factor, protein bio	3e-12
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	4e-11
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	2e-10
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	1e-09
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	2e-08
2qi2_A	347	Pelota, cell division protein pelota related prote	5e-08
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	4e-06
3agk_A	373	Peptide chain release factor subunit 1; translatio	2e-05

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386

 Score = 59.3 bits (143), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
            DV + ++   +FY  +   + + +NFD +K ++L SPGF      + +FQ    +  K
Sbjct: 179 TDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390

 Score = 56.3 bits (135), Expect = 4e-11
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
           GD   ++K L +FYD+V Q I    +FD +K V+LASPGFV    ++Y+F +      K
Sbjct: 173 GDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLK 231

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 18  KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
              E+ + ++ D   + I+           ++A PG +K    E + +
Sbjct: 167 PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQR 214

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 12/56 (21%), Positives = 30/56 (53%)

Query: 18  KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAK 73
              E   ++F+ +V + +   +  + V+  ++A PGFVK+ F++++ + +     K
Sbjct: 173 TDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPELAKK 228

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 14  EGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
              + + E  + +    +   +  +V       +LLA PGF K++  + +
Sbjct: 176 LRPLNEEEGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKV 225

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347

 Score = 47.5 bits (112), Expect = 5e-08
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           G   +   +   ++D ++  +  + N      +++  PGF +D+F  Y  Q
Sbjct: 165 GKYAEGNYSEASYFDQIVNALKNYSN-----SIIILGPGFARDRFARYCAQ 210

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           G  K    +   F+  V       +     K +++A PGF K+ F +++ +
Sbjct: 160 GYGKGMGDSRKEFFGEVAA----KLESFDFKYLIVAGPGFAKNDFLDFLKE 206

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 18  KQHEKALVRFYDNV----MQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQ 65
           +  E+ +  F+  V       ++      ++K V++A PG  K +F E  + 
Sbjct: 189 RIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYL 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	99.75
2vgn_A	386	DOM34; translation termination factor, protein bio	99.65
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	99.48
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	99.3
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	99.28
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	99.19
2qi2_A	347	Pelota, cell division protein pelota related prote	99.0
3e20_C	441	Eukaryotic peptide chain release factor subunit 1;	98.72
3agk_A	373	Peptide chain release factor subunit 1; translatio	98.71
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	98.68
3gdz_A	109	Arginyl-tRNA synthetase; klebsiella pneumoniae sub	87.92

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.2e-18  Score=137.02  Aligned_cols=81  Identities=31%  Similarity=0.450  Sum_probs=72.5

Q ss_pred             CCccccc-chhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEee
Q psy14162          9 GKLMWEG-DVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCF   87 (90)
Q Consensus         9 ~~~~r~~-~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~   87 (90)
                      .-|+|++ +++++++++++||++|++++.+++||+.+++||||||||+|++|++||..++.+.+++.|+ .+++||++||
T Consensus       166 ~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~-~~~~k~~vv~  244 (390)
T 3mca_B          166 VIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIV-KSKNKFVILH  244 (390)
T ss_dssp             CCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHH-HHGGGEEEEE
T ss_pred             eCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhh-hhcCeEEEEE
Confidence            3466543 3348999999999999999999999999999999999999999999999999999999997 8999999998


Q ss_pred             ecC
Q psy14162         88 FHS   90 (90)
Q Consensus        88 ~~~   90 (90)
                      +.+
T Consensus       245 ~s~  247 (390)
T 3mca_B          245 SST  247 (390)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            753

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*

Probab=99.65  E-value=6.1e-17  Score=126.96  Aligned_cols=80  Identities=20%  Similarity=0.349  Sum_probs=68.3

Q ss_pred             Cccccc-c-hhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEee
Q psy14162         10 KLMWEG-D-VKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCF   87 (90)
Q Consensus        10 ~~~r~~-~-~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~   87 (90)
                      -|+|++ + ++++++++++||++|++++.+++|++.++|||||||||+|++|++|+..++++.+++.|+ .+++||+++|
T Consensus       172 iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~~~~-~~~~ki~vv~  250 (386)
T 2vgn_A          172 MPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKIL-DNKGMFFIAH  250 (386)
T ss_dssp             --------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCHHHH-TTGGGEEEEE
T ss_pred             CCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccchhh-hccCcEEEEE
Confidence            455543 2 344899999999999999999999999999999999999999999999999999999997 9999999998


Q ss_pred             ecC
Q psy14162         88 FHS   90 (90)
Q Consensus        88 ~~~   90 (90)
                      +.+
T Consensus       251 ~s~  253 (386)
T 2vgn_A          251 CST  253 (386)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            753

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}

Probab=99.48  E-value=1e-14  Score=113.38  Aligned_cols=72  Identities=18%  Similarity=0.289  Sum_probs=60.3

Q ss_pred             CCCCcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEe
Q psy14162          7 EDGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYC   86 (90)
Q Consensus         7 ~~~~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~   86 (90)
                      +..-|+|++ ++.+++++++||++|++++.+++|+..+++||||||||+|++|++||.+++++         +++|++++
T Consensus       163 ~~~ipkK~~-~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~---------l~~kvv~v  232 (357)
T 3j15_A          163 RHNLGGKRY-NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE---------LAKKVVIE  232 (357)
T ss_dssp             CCCSCSSSS-SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC---------SSCEECCC
T ss_pred             EecCCCCcc-cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH---------hhCeEEEE
Confidence            345576665 45789999999999999999999999999999999999999999999987533         34667766


Q ss_pred             ee
Q psy14162         87 FF   88 (90)
Q Consensus        87 ~~   88 (90)
                      |+
T Consensus       233 ~~  234 (357)
T 3j15_A          233 DT  234 (357)
T ss_dssp             CC
T ss_pred             eC
Confidence            65

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}

Probab=99.30  E-value=2.1e-12  Score=101.03  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHH
Q psy14162         21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQV   66 (90)
Q Consensus        21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~   66 (90)
                      ++++++||++|++++.+++||..++|||||||||+|++|++||.++
T Consensus       183 ~~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~  228 (364)
T 3obw_A          183 EGIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAI  228 (364)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999774

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}

Probab=99.28  E-value=4.1e-12  Score=98.51  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             CCCcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhccc
Q psy14162          8 DGKLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQ   70 (90)
Q Consensus         8 ~~~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~   70 (90)
                      ..-|||++  +++++++++||++|++++.+++|+..+++||||||||+|++|++||..+++..
T Consensus       159 ~~vpkK~g--~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~  219 (358)
T 3agj_B          159 ARLPGKDD--PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL  219 (358)
T ss_dssp             CCCCCTTS--TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS
T ss_pred             ecCCCCCc--hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc
Confidence            34566663  46999999999999999999999999999999999999999999998887653

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}

Probab=99.19  E-value=6.5e-12  Score=97.92  Aligned_cols=52  Identities=17%  Similarity=0.415  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEeeec
Q psy14162         25 VRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYCFFH   89 (90)
Q Consensus        25 ~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~~~~   89 (90)
                      ++||++|++++.++    +++|||||||||+|++|++||..+++         .+++|+++||+.
T Consensus       170 ~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~---------~l~~kvv~v~~s  221 (352)
T 3oby_A          170 KEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYP---------EMAKNAVVVDVS  221 (352)
T ss_dssp             CCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCH---------HHHTTEEECCCC
T ss_pred             HHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHH---------HhhCcEEEEECC
Confidence            79999999999999    69999999999999999999998763         244677777763

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2

Probab=99.00  E-value=1.4e-10  Score=90.04  Aligned_cols=51  Identities=16%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162         10 KLMWEGDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFT   68 (90)
Q Consensus        10 ~~~r~~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~   68 (90)
                      -||+++. ++|++  ++||++|++++.++ |    +|||||||||+|++|.+|+..+++
T Consensus       163 ~~Kk~~~-s~f~r--~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~  213 (347)
T 2qi2_A          163 RSGKYAE-GNYSE--ASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV  213 (347)
T ss_dssp             HHHHC-----CCH--HHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC
T ss_pred             CCCcccc-chhhH--HHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc
Confidence            4555542 33444  79999999999999 4    999999999999999999998876

>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}

Probab=98.72  E-value=1.4e-09  Score=86.84  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccc---cCcccEEEEeCCCccHHHHHHH
Q psy14162         20 HEKALVRFYDNVMQGILRHVN---FDIVKCVLLASPGFVKDKFFEY   62 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~vd---F~~vk~VIIAsPGF~Kd~F~ky   62 (90)
                      +++++++||+.|++++.++++   +..+++||||||||+|++|++|
T Consensus       199 ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~  244 (441)
T 3e20_C          199 RDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQS  244 (441)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHh
Confidence            789999999999999999987   6789999999999999999995

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}

Probab=98.71  E-value=4.4e-09  Score=81.23  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcc---c-cCcccEEEEeCCCccHHHHH--HHHHHH
Q psy14162         20 HEKALVRFYDNVMQGILRHV---N-FDIVKCVLLASPGFVKDKFF--EYMFQV   66 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~v---d-F~~vk~VIIAsPGF~Kd~F~--kyl~~~   66 (90)
                      +++++.+||++|.+++.+++   | |..+++||||||||+|++|+  +||..+
T Consensus       191 ~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~  243 (373)
T 3agk_A          191 IEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYR  243 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChH
Confidence            79999999999999999998   4 78999999999999999999  887643

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A

Probab=98.68  E-value=1.7e-09  Score=85.30  Aligned_cols=44  Identities=11%  Similarity=0.040  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccC---cccEEEEeCCCccHHHHHHHHH
Q psy14162         21 EKALVRFYDNVMQGILRHVNFD---IVKCVLLASPGFVKDKFFEYMF   64 (90)
Q Consensus        21 dKal~kFf~~v~~al~r~vdF~---~vk~VIIAsPGF~Kd~F~kyl~   64 (90)
                      +++..+||++|++++.++++++   .+++||||||||+|++|++|+.
T Consensus       195 ee~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~  241 (437)
T 1dt9_A          195 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDM  241 (437)
T ss_dssp             HHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhc
Confidence            7778899999999999999886   7899999999999999988643

>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}

Probab=87.92  E-value=0.48  Score=30.57  Aligned_cols=27  Identities=30%  Similarity=0.690  Sum_probs=20.2

Q ss_pred             HHHHHHHHhccccC-cccEEEEeCCCcc
Q psy14162         29 DNVMQGILRHVNFD-IVKCVLLASPGFV   55 (90)
Q Consensus        29 ~~v~~al~r~vdF~-~vk~VIIAsPGF~   55 (90)
                      ++|++.|..+++-+ .+..|-+|||||+
T Consensus        59 ~~iA~~i~~~l~~~~~i~~vevagpGFI   86 (109)
T 3gdz_A           59 RQLAEQVLSHLDLNGIANKVEIAGPGFI   86 (109)
T ss_dssp             HHHHHHHHHHCCCTTTEEEEEEETTTEE
T ss_pred             HHHHHHHHHhcCcCCcEeEEEEeCCCeE
Confidence            46777777766543 3788999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d2vgna2	142	c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi	7e-18
d2qi2a2	117	c.55.4.2 (A:127-243) Cell division protein pelota	2e-07

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 70.6 bits (173), Expect = 7e-18
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 15  GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKS 74
            DV + ++   +FY  +   + + +NFD +K ++L SPGF      + +FQ    +  K 
Sbjct: 44  TDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKK 103

Query: 75  PSVQLISKF 83
             +     F
Sbjct: 104 -ILDNKGMF 111

>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 18 KQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYM 63
           +   +   ++D ++  +  +        +++  PGF +D+F  Y 
Sbjct: 42 AEGNYSEASYFDQIVNALKNYS-----NSIIILGPGFARDRFARYC 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d2vgna2	142	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	99.92
d2qi2a2	117	Cell division protein pelota {Thermoplasma acidoph	99.29
d1dt9a1	134	Middle domain of eukaryotic peptide chain release	97.81
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	86.93

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.92  E-value=2.8e-26  Score=158.34  Aligned_cols=81  Identities=21%  Similarity=0.365  Sum_probs=71.0

Q ss_pred             CCcccc--cchhHHHHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhcccCCCCcchhccCceEEe
Q psy14162          9 GKLMWE--GDVKQHEKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFTSQQAKSPSVQLISKFQYC   86 (90)
Q Consensus         9 ~~~~r~--~~~s~~dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~r~~~k~l~~~~kskfv~~   86 (90)
                      .=|+|+  +++++||+++++||++|++++.+|+||+.++|||||||||+||+|++||.+++++..+|.|. +++++|++|
T Consensus        36 ~iP~K~~~~~~s~~~k~~~~Ff~~v~~~l~~~~~~~~~k~iIiaGPGf~K~~F~~yl~~~~~~~~~k~i~-~~k~k~v~v  114 (142)
T d2vgna2          36 SMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKIL-DNKGMFFIA  114 (142)
T ss_dssp             ---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCHHHH-TTGGGEEEE
T ss_pred             eCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHhCcccccEEEEeCCHHHHHHHHHHHHHHhhhhhhhhHH-hccCeEEEE
Confidence            347776  35678999999999999999999999999999999999999999999999999999999997 999999999


Q ss_pred             eecC
Q psy14162         87 FFHS   90 (90)
Q Consensus        87 ~~~~   90 (90)
                      |+.+
T Consensus       115 ~tSs  118 (142)
T d2vgna2         115 HCST  118 (142)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9864

>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=5.4e-13  Score=88.48  Aligned_cols=43  Identities=19%  Similarity=0.479  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccCcccEEEEeCCCccHHHHHHHHHHHhc
Q psy14162         21 EKALVRFYDNVMQGILRHVNFDIVKCVLLASPGFVKDKFFEYMFQVFT   68 (90)
Q Consensus        21 dKal~kFf~~v~~al~r~vdF~~vk~VIIAsPGF~Kd~F~kyl~~~a~   68 (90)
                      +.+.++||++|+++|.++     ++|||||||||+||+|++||.+..+
T Consensus        45 ~~s~~~Ff~~i~~~l~~~-----~~~IIiaGPGf~Ke~f~~ylk~~~~   87 (117)
T d2qi2a2          45 NYSEASYFDQIVNALKNY-----SNSIIILGPGFARDRFARYCAQRGV   87 (117)
T ss_dssp             -CCHHHHHHHHHHHHHTC-----CSCEEEEESSSHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHHHH-----hCeEEEeCCchHHHHHHHHHHhhcc
Confidence            445679999999999987     5699999999999999999987643

>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.6e-06  Score=58.58  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcc---ccCcccEEEEeCCCccHHHHHH
Q psy14162         20 HEKALVRFYDNVMQGILRHV---NFDIVKCVLLASPGFVKDKFFE   61 (90)
Q Consensus        20 ~dKal~kFf~~v~~al~r~v---dF~~vk~VIIAsPGF~Kd~F~k   61 (90)
                      .+.+...||+.|.+...+++   +-..++.|||+|||++|++|++
T Consensus        52 re~~~~~~~kkVae~a~~~Fl~~~~~~~~giilgGpg~~K~~f~~   96 (134)
T d1dt9a1          52 RMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQ   96 (134)
T ss_dssp             HHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCceEEEEeCChHHHHHHhh
Confidence            45566689999999998886   4457999999999999999987

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.93  E-value=0.22  Score=33.02  Aligned_cols=25  Identities=16%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             cccEEEEeCCCccHHHHHHHHHHHhcc
Q psy14162         43 IVKCVLLASPGFVKDKFFEYMFQVFTS   69 (90)
Q Consensus        43 ~vk~VIIAsPGF~Kd~F~kyl~~~a~r   69 (90)
                      --|+|||.|||  |+.+.+.|.++.+.
T Consensus         8 ~~Rpivi~Gp~--K~ti~~~L~~~~p~   32 (199)
T d1kjwa2           8 YARPIIILGPT--KDRANDDLLSEFPD   32 (199)
T ss_dssp             SCCCEEEESTT--HHHHHHHHHHHCTT
T ss_pred             CCCCEEEECcC--HHHHHHHHHHhCcc
Confidence            36899999999  99999999988764