Psyllid ID: psy14176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MRIATGASMVRDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ
ccccccccccccHHHcHHHHHccccccccccccccccHHHHHcccccEEEEEEcHHHHHHHccccccccccHHHHHHHHcccccccccccccHHHHHcccHHHccccccccccEEEEEEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccccc
ccEEccccHcccHHHHHHHHHHHHHHHHHcccccccHHHEEHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEccccccccHHHHHHHHHHHHHHcHEEEccccEEEcccccccEEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHccccccHHHHHHcEEEEcccHHHHHHHHHHEccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHcc
mriatgasmvrdeKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDdlsvhgfknkmwkfslgqhchqnkskstcydtynhghrlYVNWRFMRGIEQQFLALQKGFTHWILGLLrywenptmlQLYVNWRFMRGIEQQFLALQKGFteivplhllrpfdeRELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLsqhctsdtpvVKWFWQIVESYSEEMRARLLQFVtgssrvplqgfkalq
mriatgasmvrdekqIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFvtgssrvplqgfkalq
MRIATGASMVRDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ
****************DLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTG*************
*********VRDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL*
**********RDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ
******ASMVRDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIATGASMVRDEKQIDLAEQLESVAFVLCGEDHISLDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGLLRYWENPTMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q9V8531061 E3 ubiquitin-protein liga yes N/A 0.416 0.102 0.707 3e-48
Q9HCE7757 E3 ubiquitin-protein liga yes N/A 0.416 0.143 0.650 1e-42
Q9CUN6731 E3 ubiquitin-protein liga yes N/A 0.416 0.149 0.650 1e-42
A9JRZ0765 E3 ubiquitin-protein liga no N/A 0.416 0.142 0.666 2e-42
Q2TAS2751 E3 ubiquitin-protein liga N/A N/A 0.416 0.145 0.658 1e-41
Q9PUN2731 E3 ubiquitin-protein liga N/A N/A 0.416 0.149 0.650 1e-41
Q9HAU4748 E3 ubiquitin-protein liga no N/A 0.416 0.145 0.650 2e-40
A2A5Z6748 E3 ubiquitin-protein liga no N/A 0.416 0.145 0.658 2e-40
P39940809 E3 ubiquitin-protein liga yes N/A 0.416 0.134 0.455 5e-27
Q92462767 E3 ubiquitin-protein liga yes N/A 0.416 0.142 0.430 3e-26
>sp|Q9V853|SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3 Back     alignment and function desciption
 Score =  191 bits (486), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/123 (70%), Positives = 102/123 (82%), Gaps = 14/123 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           ++LYVN+RFMRGIEQQFLALQKGF E++P HLLRPFDERELELVIGG++SID++DW+ +T
Sbjct: 891 VKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNT 950

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
           RLK              HCT++T  V WFWQ+VESYS EMRARLLQFVTGSSRVPLQGF+
Sbjct: 951 RLK--------------HCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFR 996

Query: 260 ALQ 262
           ALQ
Sbjct: 997 ALQ 999
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Down-regulates Dpp signaling after gastrulation by promoting MAD ubiquitination and subsequent degradation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9HCE7|SMUF1_HUMAN E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2 Back     alignment and function description
>sp|Q9CUN6|SMUF1_MOUSE E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=2 SV=2 Back     alignment and function description
>sp|A9JRZ0|SMUF2_DANRE E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TAS2|SMUF2_XENLA E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1 Back     alignment and function description
>sp|Q9PUN2|SMUF1_XENLA E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1 Back     alignment and function description
>sp|Q9HAU4|SMUF2_HUMAN E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1 Back     alignment and function description
>sp|A2A5Z6|SMUF2_MOUSE E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=1 SV=1 Back     alignment and function description
>sp|P39940|RSP5_YEAST E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSP5 PE=1 SV=1 Back     alignment and function description
>sp|Q92462|PUB1_SCHPO E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
383852531 907 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.120 0.772 6e-50
383852529 894 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.121 0.772 6e-50
380029637 846 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.128 0.772 6e-50
380029635 899 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.121 0.772 6e-50
350398007 906 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.120 0.772 6e-50
340720899 906 PREDICTED: e3 ubiquitin-protein ligase S 0.416 0.120 0.772 6e-50
328784531 905 PREDICTED: e3 ubiquitin-protein ligase S 0.416 0.120 0.772 6e-50
345487811 918 PREDICTED: E3 ubiquitin-protein ligase S 0.416 0.118 0.764 8e-49
270012549 889 hypothetical protein TcasGA2_TC006704 [T 0.416 0.122 0.747 1e-48
195122989 1087 GI18790 [Drosophila mojavensis] gi|19391 0.416 0.100 0.707 1e-47
>gi|383852531|ref|XP_003701780.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 95/123 (77%), Positives = 102/123 (82%), Gaps = 14/123 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           ++LYVN+RFMRGIEQQFLALQKGF E++P  LLRPFDERELELVIGGL +IDI+DWK HT
Sbjct: 737 VRLYVNYRFMRGIEQQFLALQKGFHELIPPQLLRPFDERELELVIGGLGTIDINDWKMHT 796

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
           RLK              HCT DTPVVKWFWQIVESY EEMRARLLQFVTGSSRVPLQGFK
Sbjct: 797 RLK--------------HCTPDTPVVKWFWQIVESYGEEMRARLLQFVTGSSRVPLQGFK 842

Query: 260 ALQ 262
           ALQ
Sbjct: 843 ALQ 845

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852529|ref|XP_003701779.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380029637|ref|XP_003698474.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|380029635|ref|XP_003698473.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|350398007|ref|XP_003485059.1| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720899|ref|XP_003398866.1| PREDICTED: e3 ubiquitin-protein ligase SMURF2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328784531|ref|XP_396318.4| PREDICTED: e3 ubiquitin-protein ligase SMURF2 [Apis mellifera] Back     alignment and taxonomy information
>gi|345487811|ref|XP_001606601.2| PREDICTED: E3 ubiquitin-protein ligase SMURF2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|270012549|gb|EFA08997.1| hypothetical protein TcasGA2_TC006704 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195122989|ref|XP_002005992.1| GI18790 [Drosophila mojavensis] gi|193911060|gb|EDW09927.1| GI18790 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
FB|FBgn00290061061 lack "lethal with a checkpoint 0.416 0.102 0.707 5.2e-42
UNIPROTKB|J9NW19556 SMURF1 "Uncharacterized protei 0.416 0.196 0.650 1.1e-39
UNIPROTKB|F1NFN4729 SMURF1 "E3 ubiquitin-protein l 0.416 0.149 0.658 2.4e-39
MGI|MGI:1923038731 Smurf1 "SMAD specific E3 ubiqu 0.416 0.149 0.650 4.1e-39
RGD|1594738731 Smurf1 "SMAD specific E3 ubiqu 0.416 0.149 0.650 4.1e-39
UNIPROTKB|Q9HCE7757 SMURF1 "E3 ubiquitin-protein l 0.416 0.143 0.650 4.7e-39
UNIPROTKB|F1PQT6754 SMURF1 "E3 ubiquitin-protein l 0.416 0.144 0.650 6e-39
ZFIN|ZDB-GENE-040426-2744731 smurf1 "SMAD specific E3 ubiqu 0.416 0.149 0.658 6.7e-39
UNIPROTKB|I3LTD6731 SMURF1 "E3 ubiquitin-protein l 0.416 0.149 0.658 8.6e-39
UNIPROTKB|F1MLS5770 Bt.110349 "E3 ubiquitin-protei 0.416 0.141 0.658 1.1e-38
FB|FBgn0029006 lack "lethal with a checkpoint kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 445 (161.7 bits), Expect = 5.2e-42, Sum P(2) = 5.2e-42
 Identities = 87/123 (70%), Positives = 102/123 (82%)

Query:   140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
             ++LYVN+RFMRGIEQQFLALQKGF E++P HLLRPFDERELELVIGG++SID++DW+ +T
Sbjct:   891 VKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNT 950

Query:   200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
             RLK              HCT++T  V WFWQ+VESYS EMRARLLQFVTGSSRVPLQGF+
Sbjct:   951 RLK--------------HCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFR 996

Query:   260 ALQ 262
             ALQ
Sbjct:   997 ALQ 999
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA;NAS
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IGI
GO:0005515 "protein binding" evidence=IPI
GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP
GO:0008101 "decapentaplegic signaling pathway" evidence=IMP
GO:0048619 "embryonic hindgut morphogenesis" evidence=IMP
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IMP
GO:0040008 "regulation of growth" evidence=IGI;IMP
GO:0010629 "negative regulation of gene expression" evidence=IDA
GO:0007293 "germarium-derived egg chamber formation" evidence=IGI
GO:0030514 "negative regulation of BMP signaling pathway" evidence=IGI
GO:0005634 "nucleus" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
UNIPROTKB|J9NW19 SMURF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFN4 SMURF1 "E3 ubiquitin-protein ligase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1923038 Smurf1 "SMAD specific E3 ubiquitin protein ligase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1594738 Smurf1 "SMAD specific E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCE7 SMURF1 "E3 ubiquitin-protein ligase SMURF1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQT6 SMURF1 "E3 ubiquitin-protein ligase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2744 smurf1 "SMAD specific E3 ubiquitin protein ligase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTD6 SMURF1 "E3 ubiquitin-protein ligase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLS5 Bt.110349 "E3 ubiquitin-protein ligase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V853SMUF1_DROME6, ., 3, ., 2, ., -0.70730.41600.1027yesN/A
Q9HCE7SMUF1_HUMAN6, ., 3, ., 2, ., -0.65040.41600.1439yesN/A
Q9CUN6SMUF1_MOUSE6, ., 3, ., 2, ., -0.65040.41600.1491yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-42
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 4e-39
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 4e-35
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 7e-34
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  148 bits (375), Expect = 1e-42
 Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 13/123 (10%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           + LYV++R  +GIE+Q  A + GF+E++P  LL  F   ELEL+I G   ID+ D K++T
Sbjct: 192 VDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNT 251

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
             K                +SD+P ++WFW+++ES++ E R + LQFVTGSSR+P+ GF 
Sbjct: 252 EYKGGY-------------SSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFA 298

Query: 260 ALQ 262
            L 
Sbjct: 299 DLN 301

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG0939|consensus720 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0941|consensus850 100.0
KOG0942|consensus1001 100.0
KOG0170|consensus621 100.0
KOG4427|consensus1096 100.0
KOG0940|consensus358 99.96
KOG0943|consensus3015 99.93
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-53  Score=429.05  Aligned_cols=228  Identities=33%  Similarity=0.548  Sum_probs=211.1

Q ss_pred             CcchHHHHHHHhhhcc---cceecCCCCCC---------hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHHHH
Q psy14176         10 VRDEKQIDLAEQLESV---AFVLCGEDHIS---------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMWKF   77 (262)
Q Consensus        10 ~~~e~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~k~   77 (262)
                      |+.|+=..|+.+++++   .|..+.++...         .++++++|+|+|++||+||     ++++.++++||++|||+
T Consensus       559 ltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~fiGrvIGkaI-----yd~~~LD~~F~~~fyKk  633 (872)
T COG5021         559 LTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRVIGKAI-----YDSRILDVQFSKAFYKK  633 (872)
T ss_pred             cchHHHHHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHHHHHHHHHHH-----HhcceeeecchHHHHHH
Confidence            6778878999999986   45555554222         3889999999999999999     99999999999999999


Q ss_pred             hhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccc-hheeeeEeEeeeeCCee-------------eeech-HHHHHH
Q psy14176         78 SLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQ-QFLALQKGFTHWILGLL-------------RYWEN-PTMLQL  142 (262)
Q Consensus        78 Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~-~~l~l~F~v~~~~~g~~-------------vt~eN-~eYv~~  142 (262)
                      |++++++++|++++  |  |++|++ |.||+++++++ . ++++|+++.+.+|..             ||.+| ++||++
T Consensus       634 lL~~~~sl~Dl~s~--D--pe~y~s-Lv~ll~~~~d~~~-l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~  707 (872)
T COG5021         634 LLGKPVSLVDLESL--D--PELYRS-LVWLLNNDIDETI-LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKK  707 (872)
T ss_pred             HhCCCCchhhhhhc--C--HHHHHH-HHHHHcCCCCcce-eeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHH
Confidence            99999999999999  9  999999 99999999988 5 999999887766644             34459 999999


Q ss_pred             HHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCC-CchhhhccceeecccccchhhhhhccCCCCCC
Q psy14176        143 YVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTS-IDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSD  221 (262)
Q Consensus       143 ~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~-id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~  221 (262)
                      +++|+++++|++|++||..||.+|||.+++++|++.||+.||||.++ ||++|||++|.|.              ||+++
T Consensus       708 vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~--------------GY~~~  773 (872)
T COG5021         708 VVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYH--------------GYTED  773 (872)
T ss_pred             HHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhccccc--------------ccccC
Confidence            99999999999999999999999999999999999999999999998 9999999999998              99999


Q ss_pred             CHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176        222 TPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ  262 (262)
Q Consensus       222 ~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~  262 (262)
                      +|+|.|||++|++|+.|+|++|||||||++|+|++||++||
T Consensus       774 s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~  814 (872)
T COG5021         774 SPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQ  814 (872)
T ss_pred             CcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcC
Confidence            99999999999999999999999999999999999999996

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 2e-41
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 1e-26
3jvz_C385 E2~ubiquitin-Hect Length = 385 1e-23
3jw0_C385 E2~ubiquitin-Hect Length = 385 1e-23
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 7e-23
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 1e-22
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 5e-22
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 2e-19
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 3e-19
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 4e-19
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 4e-10
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 95/123 (77%), Gaps = 14/123 (11%)
Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           ++LYVNWRF+RGIE QFLALQKGF E++P HLL+ FDE+ELEL+I GL  ID++DWK +T
Sbjct: 214 VRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNT 273
Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
           RLK              HCT D+ +VKWFW+ VE + EE RARLLQFVTGSSRVPLQGFK
Sbjct: 274 RLK--------------HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFK 319
Query: 260 ALQ 262
           ALQ
Sbjct: 320 ALQ 322
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 9e-52
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 2e-51
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 3e-51
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 2e-50
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 7e-50
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 2e-47
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 2e-23
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
 Score =  173 bits (440), Expect = 9e-52
 Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 14/123 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           ++LY  WR +  +++QF A   GF E++P  L+  FDERELEL+IGG+  IDI DWK+HT
Sbjct: 264 VELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHT 323

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
             +                     V++WFW+ V  +  E RARLLQF TG+SR+P+ GFK
Sbjct: 324 DYR--------------GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFK 369

Query: 260 ALQ 262
            LQ
Sbjct: 370 DLQ 372
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 99.78
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.3e-55  Score=408.81  Aligned_cols=232  Identities=44%  Similarity=0.692  Sum_probs=207.7

Q ss_pred             CCCCCcchHHHHHHHhhhccc---ceecCCCCC----C-----hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHH
Q psy14176          6 GASMVRDEKQIDLAEQLESVA---FVLCGEDHI----S-----LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNK   73 (262)
Q Consensus         6 ~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~----~-----~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~   73 (262)
                      +++=+..|+=..++.++.++.   |..++++..    +     .++++++|+|+|+++|+||     +++.+++++||++
T Consensus        65 D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al-----~~~~~ld~~f~~~  139 (380)
T 1zvd_A           65 DYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV-----FHGHYIDGGFTLP  139 (380)
T ss_dssp             CHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHH-----HTTCCCCCCCCHH
T ss_pred             CCCccHHHHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHH-----hCCceeCCcCCHH
Confidence            343356677678899988764   444433311    1     2568899999999999999     9999999999999


Q ss_pred             HHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeeeCC-----------e--eeeech-HHH
Q psy14176         74 MWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILG-----------L--LRYWEN-PTM  139 (262)
Q Consensus        74 f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~~g-----------~--~vt~eN-~eY  139 (262)
                      |||+|+|.+++++||+++  |  |++|++ |++|+++++++. ++++|+++.+.+|           .  .||.+| .+|
T Consensus       140 f~k~llg~~~~l~Dl~~~--D--p~l~~s-L~~ll~~d~~~~-l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eY  213 (380)
T 1zvd_A          140 FYKQLLGKSITLDDMELV--D--PDLHNS-LVWILENDITGV-LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEY  213 (380)
T ss_dssp             HHHHHTTCCCCSTTHHHH--C--HHHHHH-HHHHHHSCCTTT-SCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHH
T ss_pred             HHHHHhCCCCCHHHHHHh--C--HHHHHH-HHHHHhCCcccc-ccceeEEeeecCCcEeEEecCCCCCCCccccccHHHH
Confidence            999999999999999999  9  999999 999999999876 8999998765444           2  266679 999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCC
Q psy14176        140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCT  219 (262)
Q Consensus       140 v~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~  219 (262)
                      |+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|.              ||+
T Consensus       214 v~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~--------------gy~  279 (380)
T 1zvd_A          214 VRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLK--------------HCT  279 (380)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEE--------------SSC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEec--------------CCC
Confidence            999999999999999999999999999999999999999999999999999999999999999              899


Q ss_pred             CCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176        220 SDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ  262 (262)
Q Consensus       220 ~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~  262 (262)
                      +++++|+|||++|++||++||++||+|||||+|+|++||++|+
T Consensus       280 ~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~  322 (380)
T 1zvd_A          280 PDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQ  322 (380)
T ss_dssp             TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCE
T ss_pred             CCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhcc
Confidence            9999999999999999999999999999999999999999873
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 2e-25
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 7e-22
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-25
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 14/123 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           + L   WRF RG+++Q  A   GF E+VPL  L+ FDE+ELE+++ G+  +D+ DW+++T
Sbjct: 214 IGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNT 273

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
                           +H T ++  + WFWQ V+    E+R RLLQFVTG+ R+PL GF 
Sbjct: 274 VY--------------RHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFA 319

Query: 260 ALQ 262
            L 
Sbjct: 320 ELM 322
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-50  Score=373.61  Aligned_cols=234  Identities=29%  Similarity=0.485  Sum_probs=209.8

Q ss_pred             ccCCCCCcchHHHHHHHhhhcc---cceecCCCCCC---------hHHHHHHHHHHHHHhhccccccccccCeeecCCCC
Q psy14176          4 ATGASMVRDEKQIDLAEQLESV---AFVLCGEDHIS---------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFK   71 (262)
Q Consensus         4 ~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~   71 (262)
                      +.+++=+..|+=..++.++.++   .|..++++...         .++++++|+++|+++|+||     +++.+++++||
T Consensus        62 g~D~GG~~rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al-----~~~~~~~~~f~  136 (374)
T d1nd7a_          62 GLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMAL-----FHGKFIDTGFS  136 (374)
T ss_dssp             CCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHH-----HTTCCCCCCCC
T ss_pred             ccCCCccHHHHHHHHHHHHcCCccCCeeecCCCCcccccCCccccChhHHHHHHHhHHHHHHHH-----HcCcccCCCcc
Confidence            3455556778867999998764   46666655332         2567899999999999999     99999999999


Q ss_pred             HHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeee-----------eCCe--eeeech-H
Q psy14176         72 NKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHW-----------ILGL--LRYWEN-P  137 (262)
Q Consensus        72 ~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~-----------~~g~--~vt~eN-~  137 (262)
                      ++|||+|+|.+++++||+++  |  |+++++ ++++++++.++..++++|+++..           ++|.  .||.+| +
T Consensus       137 ~~f~k~Llg~~~t~~DL~~i--D--~~~~~s-l~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~  211 (374)
T d1nd7a_         137 LPFYKRMLSKKLTIKDLESI--D--TEFYNS-LIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKD  211 (374)
T ss_dssp             HHHHHHHTTCCCCHHHHHTT--C--HHHHHH-HHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHH
T ss_pred             HHHHHHhcCCCCCHHHHHHh--C--HHHHHh-HHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHH
Confidence            99999999999999999999  9  999999 99999988887557888887543           3443  477789 9


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCC
Q psy14176        138 TMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQH  217 (262)
Q Consensus       138 eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g  217 (262)
                      +||+++++++++++++.|++|||+||++|+|...+++|+|+||+.++||+++||+++|+++|.|.              |
T Consensus       212 ~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~--------------g  277 (374)
T d1nd7a_         212 EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR--------------H  277 (374)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEE--------------S
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeec--------------c
Confidence            99999999999999999999999999999999999999999999999999999999999999998              9


Q ss_pred             CCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCccccccc
Q psy14176        218 CTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL  261 (262)
Q Consensus       218 ~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L  261 (262)
                      |+++++.|+|||+++++||++||++||+|+||++|+|++||++|
T Consensus       278 y~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l  321 (374)
T d1nd7a_         278 YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL  321 (374)
T ss_dssp             CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGC
T ss_pred             CCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCcchhhh
Confidence            99999999999999999999999999999999999999999987
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure