Psyllid ID: psy14216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MGSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA
cccccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccEEEEEcccccccccccccccHHcHHHHHccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEccccccEEEccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccEEEEccccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHEEEEcccccEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEcccccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccc
mgsvkeaescdclqgfqlthslgggtgsgmGTLMISKIREeypdrimntfsivpspkvsdtvvepynATLSIHQLVentdetfcidnEALYEICFRTLklttptygdlNHLVSAAMSGVttclrfpgqlnsdLRKLAvnmvpfprlhffmpgfapltsrgsqqyrslTVPELVQQMFDAKnmmaacdprhgkYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEwipnncktavcdipprgLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEaavddeggeddneegdgda
MGSVKEAESCDCLQGFQlthslgggtgsGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAvddeggeddneegdgda
MGSVKEAESCDCLQGFQLTHslgggtgsgmgtlmISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVddeggeddneegdgdA
*********CDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQ**********************
**SVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA******************
*********CDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQ********************
MGSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEA******************
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MGSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDDNEEGDGDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
P41937444 Tubulin beta-4 chain OS=C yes N/A 0.972 0.720 0.884 1e-165
Q94571452 Tubulin beta-2 chain OS=H N/A N/A 0.933 0.679 0.866 1e-165
O17449447 Tubulin beta-1 chain OS=M N/A N/A 0.951 0.700 0.894 1e-164
P61857446 Tubulin beta-2 chain OS=D yes N/A 0.933 0.688 0.908 1e-164
P61858446 Tubulin beta-2 chain OS=D N/A N/A 0.933 0.688 0.908 1e-164
P30883445 Tubulin beta-4 chain OS=X N/A N/A 0.933 0.689 0.912 1e-164
P83130446 Tubulin beta-2 chain OS=D N/A N/A 0.933 0.688 0.908 1e-164
P11833447 Tubulin beta chain OS=Par N/A N/A 0.933 0.686 0.912 1e-164
Q9YHC3445 Tubulin beta-1 chain OS=G N/A N/A 0.933 0.689 0.912 1e-164
Q27U48447 Tubulin beta-1 chain OS=G N/A N/A 0.933 0.686 0.912 1e-164
>sp|P41937|TBB4_CAEEL Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=3 SV=1 Back     alignment and function desciption
 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/320 (88%), Positives = 307/320 (95%)

Query: 5   KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
           KEAESCDCLQGFQ+THSLGGGTGSGMGTL+ISKIREEYPDRIM TFS+VPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVVE 181

Query: 65  PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
           PYNATLS+HQLVENTDETFCIDNEALY+ICFRTLKLTTPTYGDLNHLVS  MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLR 241

Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
           FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPEL QQMFDAKNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDAKNMMA 301

Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
           ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRG+
Sbjct: 302 ACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGV 361

Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
           KMAATF+GN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421

Query: 305 YQQYQEAAVDDEGGEDDNEE 324
           YQQYQEA  DDEG  D++++
Sbjct: 422 YQQYQEATADDEGEFDEHDQ 441
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Caenorhabditis elegans (taxid: 6239)
>sp|Q94571|TBB2_HOMAM Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1 Back     alignment and function description
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1 Back     alignment and function description
>sp|P61857|TBB2_DROME Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1 Back     alignment and function description
>sp|P61858|TBB2_DROHY Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1 Back     alignment and function description
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1 Back     alignment and function description
>sp|P83130|TBB2_DROER Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1 Back     alignment and function description
>sp|P11833|TBB_PARLI Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1 Back     alignment and function description
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1 Back     alignment and function description
>sp|Q27U48|TBB1_GLOMM Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
306922435 456 GH12877p [Drosophila melanogaster] 0.933 0.673 0.908 1e-170
156389348 442 predicted protein [Nematostella vectensi 0.933 0.694 0.889 1e-167
395831913377 PREDICTED: tubulin beta chain [Otolemur 0.933 0.814 0.878 1e-166
341901916 444 hypothetical protein CAEBREN_03813 [Caen 0.972 0.720 0.893 1e-165
321471061 448 hypothetical protein DAPPUDRAFT_302845 [ 0.987 0.725 0.880 1e-165
324515923 444 Tubulin beta-4 chain, partial [Ascaris s 0.972 0.720 0.890 1e-165
263173267339 beta tubulin [Cimex lectularius] 0.969 0.941 0.887 1e-165
321458608 447 hypothetical protein DAPPUDRAFT_300845 [ 0.984 0.724 0.876 1e-165
312371023 442 hypothetical protein AND_22725 [Anophele 0.984 0.733 0.873 1e-164
57116598423 testis beta tubulin, partial [Drosophila 0.951 0.739 0.900 1e-164
>gi|306922435|gb|ADN07431.1| GH12877p [Drosophila melanogaster] Back     alignment and taxonomy information
 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 279/307 (90%), Positives = 298/307 (97%)

Query: 5   KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
           KEAESCDCLQGFQLTHSL GGTGSGMGTL+ISKIREEYPDRIMNT+S+VPSPKVSDTVVE
Sbjct: 131 KEAESCDCLQGFQLTHSLDGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVE 190

Query: 65  PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
           PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVS  MSGVTTCLR
Sbjct: 191 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLR 250

Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
           FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 251 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 310

Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
           ACDPRHG+YLTVAAIFRGRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 311 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL 370

Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
           KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 371 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 430

Query: 305 YQQYQEA 311
           YQQYQEA
Sbjct: 431 YQQYQEA 437

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|395831913|ref|XP_003789027.1| PREDICTED: tubulin beta chain [Otolemur garnettii] Back     alignment and taxonomy information
>gi|341901916|gb|EGT57851.1| hypothetical protein CAEBREN_03813 [Caenorhabditis brenneri] Back     alignment and taxonomy information
>gi|321471061|gb|EFX82035.1| hypothetical protein DAPPUDRAFT_302845 [Daphnia pulex] Back     alignment and taxonomy information
>gi|324515923|gb|ADY46359.1| Tubulin beta-4 chain, partial [Ascaris suum] Back     alignment and taxonomy information
>gi|263173267|gb|ACY69895.1| beta tubulin [Cimex lectularius] Back     alignment and taxonomy information
>gi|321458608|gb|EFX69673.1| hypothetical protein DAPPUDRAFT_300845 [Daphnia pulex] Back     alignment and taxonomy information
>gi|312371023|gb|EFR19299.1| hypothetical protein AND_22725 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|57116598|gb|AAW33777.1| testis beta tubulin, partial [Drosophila bifurca] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
FB|FBgn0003889446 betaTub85D "beta-Tubulin at 85 0.933 0.688 0.866 1.5e-147
ZFIN|ZDB-GENE-030131-8625445 tubb4b "tubulin, beta 4B class 0.933 0.689 0.869 1.5e-147
ZFIN|ZDB-GENE-051113-284472 zgc:123194 "zgc:123194" [Danio 0.933 0.650 0.872 1.5e-147
ZFIN|ZDB-GENE-030131-7926444 wu:fj41e11 "wu:fj41e11" [Danio 0.933 0.691 0.869 1.9e-147
ZFIN|ZDB-GENE-060929-220444 zgc:153426 "zgc:153426" [Danio 0.933 0.691 0.869 1.9e-147
UNIPROTKB|F1NYB1444 TUBB3 "Uncharacterized protein 0.933 0.691 0.866 3.1e-147
UNIPROTKB|G1K342445 TUBB3 "Uncharacterized protein 0.933 0.689 0.866 3.1e-147
UNIPROTKB|Q3MHM5445 TUBB4B "Tubulin beta-4B chain" 0.933 0.689 0.866 3.1e-147
UNIPROTKB|L7N0I7445 TUBB4B "Uncharacterized protei 0.933 0.689 0.866 3.1e-147
UNIPROTKB|P68371445 TUBB4B "Tubulin beta-4B chain" 0.933 0.689 0.866 3.1e-147
FB|FBgn0003889 betaTub85D "beta-Tubulin at 85D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 266/307 (86%), Positives = 286/307 (93%)

Query:     5 KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
             KE+E CDCLQGFQLTH              ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct:   122 KESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181

Query:    65 PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
             PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct:   182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241

Query:   125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
             FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct:   242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301

Query:   185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
             ACDPRHG+YLTVAAIFRGRMSMKEVDEQMLNIQNKN+S+FVEWIPNNCKTAVCDIPPRGL
Sbjct:   302 ACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGL 361

Query:   245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
             KM+ATFIGN+TAIQELF+R+S+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct:   362 KMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421

Query:   305 YQQYQEA 311
             YQQYQEA
Sbjct:   422 YQQYQEA 428
GO:0045298 "tubulin complex" evidence=NAS
GO:0005525 "GTP binding" evidence=IEA;NAS
GO:0005874 "microtubule" evidence=IEA;ISS;NAS
GO:0007017 "microtubule-based process" evidence=IEA;ISS
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007435 "salivary gland morphogenesis" evidence=IGI;IMP
ZFIN|ZDB-GENE-030131-8625 tubb4b "tubulin, beta 4B class IVb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051113-284 zgc:123194 "zgc:123194" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7926 wu:fj41e11 "wu:fj41e11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-220 zgc:153426 "zgc:153426" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYB1 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K342 TUBB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHM5 TUBB4B "Tubulin beta-4B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7N0I7 TUBB4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P68371 TUBB4B "Tubulin beta-4B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ERD7TBB3_MOUSENo assigned EC number0.85230.98170.7177noN/A
Q6B856TBB2B_BOVINNo assigned EC number0.90220.93310.6898noN/A
Q9YHC3TBB1_GADMONo assigned EC number0.91200.93310.6898N/AN/A
Q4R5B3TBB2A_MACFANo assigned EC number0.89900.93310.6898N/AN/A
Q13885TBB2A_HUMANNo assigned EC number0.89900.93310.6898yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.90520.93000.6876yesN/A
P09203TBB1_CHICKNo assigned EC number0.89900.93310.6898yesN/A
P32882TBB2_CHICKNo assigned EC number0.90220.93310.6898yesN/A
P04350TBB4A_HUMANNo assigned EC number0.90190.93000.6891yesN/A
P83130TBB2_DROERNo assigned EC number0.90870.93310.6883N/AN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.90550.93310.6914yesN/A
P99024TBB5_MOUSENo assigned EC number0.90550.93310.6914yesN/A
P61857TBB2_DROMENo assigned EC number0.90870.93310.6883yesN/A
Q24560TBB1_DROMENo assigned EC number0.91200.93310.6868noN/A
P02554TBB_PIGNo assigned EC number0.90550.93310.6898yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.90550.93310.6914yesN/A
Q5R943TBB5_PONABNo assigned EC number0.90550.93310.6914yesN/A
Q3KRE8TBB2B_RATNo assigned EC number0.90220.93310.6898yesN/A
P69897TBB5_RATNo assigned EC number0.90550.93310.6914yesN/A
P61858TBB2_DROHYNo assigned EC number0.90870.93310.6883N/AN/A
P85108TBB2A_RATNo assigned EC number0.89900.93310.6898yesN/A
Q27U48TBB1_GLOMMNo assigned EC number0.91200.93310.6868N/AN/A
P41937TBB4_CAEELNo assigned EC number0.88430.97260.7207yesN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.90190.93000.6891yesN/A
P09206TBB3_CHICKNo assigned EC number0.89900.93310.6898yesN/A
P69893TBB5_CRIGRNo assigned EC number0.90550.93310.6914yesN/A
P68372TBB4B_MOUSENo assigned EC number0.90840.93000.6876yesN/A
P69895TBB5_MACMUNo assigned EC number0.90550.93310.6914noN/A
P68371TBB4B_HUMANNo assigned EC number0.90840.93000.6876yesN/A
O44388TBB_TRITRNo assigned EC number0.90290.93920.6959N/AN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.90190.93000.6891noN/A
P09244TBB7_CHICKNo assigned EC number0.90550.93310.6914yesN/A
O17449TBB1_MANSENo assigned EC number0.89450.95130.7002N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.90550.93310.6914yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.90550.93310.6914yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.90190.93000.6891N/AN/A
Q4QRB4TBB3_RATNo assigned EC number0.85230.98170.7177noN/A
P11833TBB_PARLINo assigned EC number0.91200.93310.6868N/AN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.90220.93310.6898yesN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.90220.93310.6898yesN/A
Q91240TBB_PSEAMNo assigned EC number0.90550.93310.6898N/AN/A
Q91575TBB5_XENLANo assigned EC number0.90550.93310.6914N/AN/A
P07437TBB5_HUMANNo assigned EC number0.90550.93310.6914yesN/A
P13602TBB2_XENLANo assigned EC number0.89350.94220.6997N/AN/A
Q3MHM5TBB4B_BOVINNo assigned EC number0.90840.93000.6876noN/A
Q94571TBB2_HOMAMNo assigned EC number0.86640.93310.6792N/AN/A
P30883TBB4_XENLANo assigned EC number0.91200.93310.6898N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.89900.93310.6898yesN/A
P08841TBB3_DROMENo assigned EC number0.85840.98480.7136noN/A
P36221TBB1_NOTCONo assigned EC number0.90870.93310.6883N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-142
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-113
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-112
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-108
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-104
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-85
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 4e-76
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 3e-72
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 3e-69
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-67
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 1e-44
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-40
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-35
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 2e-26
cd06060493 cd06060, misato, Human Misato shows similarity wit 9e-06
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 2e-05
cd02191303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 3e-04
COG0206338 COG0206, FtsZ, Cell division GTPase [Cell division 8e-04
COG2384226 COG2384, COG2384, Predicted SAM-dependent methyltr 0.001
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  701 bits (1811), Expect = 0.0
 Identities = 274/305 (89%), Positives = 294/305 (96%)

Query: 5   KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
           KEAESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIM TFS+ PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180

Query: 65  PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
           PYNATLS+HQLVEN+DETFCIDNEALY+ICFRTLKLT PTYGDLNHLVSA MSG+TTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240

Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
           FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 300

Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
           ACDPRHG+YLT AAIFRGR+SMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 301 ACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 360

Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
           KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 361 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 420

Query: 305 YQQYQ 309
           YQQYQ
Sbjct: 421 YQQYQ 425

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
COG5023443 Tubulin [Cytoskeleton] 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1374|consensus448 100.0
KOG1376|consensus407 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.97
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.95
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.93
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.92
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.9
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.88
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.85
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.84
PRK13018378 cell division protein FtsZ; Provisional 99.81
PF14881180 Tubulin_3: Tubulin domain 99.77
PRK09330384 cell division protein FtsZ; Validated 99.75
KOG2530|consensus483 99.53
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 98.97
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.76
PF13809345 Tubulin_2: Tubulin like 95.83
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1e-99  Score=693.15  Aligned_cols=317  Identities=51%  Similarity=0.937  Sum_probs=310.0

Q ss_pred             cccchhhhcCCCCcceeEeeCCCCcccchHHHHHHHhHhhCCCceeeeEeecCCCCCCccchhhhhhHhhHhhhhccCCc
Q psy14216          2 GSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDE   81 (329)
Q Consensus         2 ~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~l~d~y~k~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~   81 (329)
                      .|||++|.||+||||+++||+|||||||+|++|+|+|++||||+.+.+++|+|.++.+++||||||++|+++.|.|+||+
T Consensus       119 ~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~  198 (443)
T COG5023         119 MIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDC  198 (443)
T ss_pred             HHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHHHhhhcccccCCCccchhHHHHhhhccCcccccCCCCCchhhhhhccccccCCcccccccCcccccccCC
Q psy14216         82 TFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS  161 (329)
Q Consensus        82 ~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~~~~l~~l~~nLvP~p~~~fl~~~~~P~~~~~~  161 (329)
                      ++++||++|++||.+.|++++|+|.++|++||++++++|+++||||++|.||+++.+||||||++||+.++|+|+.+..+
T Consensus       199 tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~  278 (443)
T COG5023         199 TFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGS  278 (443)
T ss_pred             eEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccCCHHHHHHhhcccCccccccCCCCCceeeeeccccCCCChHHHHHHHHhhhhccccccccccCCCceeeeecCCC
Q psy14216        162 QQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP  241 (329)
Q Consensus       162 ~~~~~~t~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~f~~w~p~~~~~~~~~~~~  241 (329)
                      ..+++.|+.+++++||+|+|+|++|||++|+|+++++++||++.+++++.++.+++.|+..+|++|+|+++++++|+.+|
T Consensus       279 ~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P  358 (443)
T COG5023         279 AAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPP  358 (443)
T ss_pred             HHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ---CCCcceeeecccChhHHHHHHhhhhhhhcccccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy14216        242 ---RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGG  318 (329)
Q Consensus       242 ---~~~~~s~~~l~N~t~I~~~l~~i~~~f~~m~~krAflH~Y~~~Gmee~ef~ea~~~l~~l~~~Y~~~~~~~~~~~~~  318 (329)
                         .+.+.++++|+|+|+|.+.|+++.++|++||+||||||||+++|||++||.||+++|++|+++|++++.++.++++.
T Consensus       359 ~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         359 SEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             cccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence               58899999999999999999999999999999999999999999999999999999999999999999988766443

>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-165
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-165
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-164
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-164
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-163
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-163
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-163
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-163
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-162
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-138
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 4e-65
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 4e-65
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 4e-65
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 7e-65
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-64
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-64
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-64
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-64
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 2e-64
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 3e-64
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 3e-64
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 4e-64
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 9e-54
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-50
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 7e-44
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 7e-44
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  576 bits (1484), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 265/307 (86%), Positives = 286/307 (93%)
Query: 5   KEAESCDCLQGFQLTHXXXXXXXXXXXXXXISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
           KE+ESCDCLQGFQLTH              ISKIREEYPDRIMNTFS+VPSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 65  PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
           PYNATLS+HQLVENTDET+CIDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241
Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
           FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMA 301
Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
           ACDPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361
Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
           KM+ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 305 YQQYQEA 311
           YQQYQ+A
Sbjct: 422 YQQYQDA 428
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 5e-05
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  588 bits (1518), Expect = 0.0
 Identities = 279/322 (86%), Positives = 306/322 (95%)

Query: 5   KEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVE 64
           KE+ESCDCLQGFQLTHSLGGGTGSGMGTL+ISKIREEYPDRIMNTFS++PSPKVSDTVVE
Sbjct: 122 KESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVE 181

Query: 65  PYNATLSIHQLVENTDETFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLR 124
           PYNATLS+HQLVENTDET+ IDNEALY+ICFRTLKLTTPTYGDLNHLVSA MSGVTTCLR
Sbjct: 182 PYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241

Query: 125 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMA 184
           FPGQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFD+KNMMA
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMA 301

Query: 185 ACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGL 244
           ACDPRHG+YLTVA IFRGRMSMKEVDEQMLNIQNKN+SYFVEWIPNN KTAVCDIPPRGL
Sbjct: 302 ACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL 361

Query: 245 KMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISE 304
           KM++TFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SE
Sbjct: 362 KMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421

Query: 305 YQQYQEAAVDDEGGEDDNEEGD 326
           YQQYQ+A  D++G  ++ E  D
Sbjct: 422 YQQYQDATADEQGEFEEEEGED 443
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.94
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.94
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.94
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.36
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 98.43
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 97.59
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=1.3e-94  Score=698.89  Aligned_cols=325  Identities=86%  Similarity=1.358  Sum_probs=308.2

Q ss_pred             cccchhhhcCCCCcceeEeeCCCCcccchHHHHHHHhHhhCCCceeeeEeecCCCCCCccchhhhhhHhhHhhhhccCCc
Q psy14216          2 GSVKEAESCDCLQGFQLTHSLGGGTGSGMGTLMISKIREEYPDRIMNTFSIVPSPKVSDTVVEPYNATLSIHQLVENTDE   81 (329)
Q Consensus         2 ~iR~~~E~cd~lqgf~i~~s~~GGtGSG~~s~l~e~l~d~y~k~~~~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~   81 (329)
                      .|||++|+||+||||+++||+|||||||+|++|+|.|+++|||+.+++++|+|+++.++++++|||++|++++|.+++|+
T Consensus       119 ~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~  198 (445)
T 3ryc_B          119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDE  198 (445)
T ss_dssp             HHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCTTSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSE
T ss_pred             HHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcCccccceEEEEeCCccccccccchhhhhhHhhhhcccce
Confidence            58999999999999999999999999999999999999999999999999999987789999999999999999999999


Q ss_pred             cccccchhhHHHhhhcccccCCCccchhHHHHhhhccCcccccCCCCCchhhhhhccccccCCcccccccCcccccccCC
Q psy14216         82 TFCIDNEALYEICFRTLKLTTPTYGDLNHLVSAAMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS  161 (329)
Q Consensus        82 ~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~~~~l~~l~~nLvP~p~~~fl~~~~~P~~~~~~  161 (329)
                      ++++||++|+++|.+.+++..|+|.++|++||++++++|+++||||.+|.||.++++||||||++||+.++|+|+++..+
T Consensus       199 ~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slRf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~  278 (445)
T 3ryc_B          199 TYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS  278 (445)
T ss_dssp             EEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTC
T ss_pred             eEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhccccccCcccccCHHHHhhcccCCCceeeeccccCcccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cccccCCHHHHHHhhcccCccccccCCCCCceeeeeccccCCCChHHHHHHHHhhhhccccccccccCCCceeeeecCCC
Q psy14216        162 QQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPP  241 (329)
Q Consensus       162 ~~~~~~t~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~k~~~~~~f~~w~p~~~~~~~~~~~~  241 (329)
                      ..++++++.+|++++|+++|+|++|||++|||+++++++||+++++++..++.++|+|++++|++|+|+++|+++|++||
T Consensus       279 ~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp  358 (445)
T 3ryc_B          279 QQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP  358 (445)
T ss_dssp             CCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEESCCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCC
T ss_pred             hhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeecCCChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeeecccChhHHHHHHhhhhhhhcccccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy14216        242 RGLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAAVDDEGGEDD  321 (329)
Q Consensus       242 ~~~~~s~~~l~N~t~I~~~l~~i~~~f~~m~~krAflH~Y~~~Gmee~ef~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~  321 (329)
                      .+.++++++|+|+|+|.++|+++.+||++||+||||||||++|||||+||.||+++|++|+++|++++.++.++|++.+|
T Consensus       359 ~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~  438 (445)
T 3ryc_B          359 RGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEE  438 (445)
T ss_dssp             TTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC------
T ss_pred             cccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777665555


Q ss_pred             CcccC
Q psy14216        322 NEEGD  326 (329)
Q Consensus       322 ~~~~~  326 (329)
                      ++|++
T Consensus       439 ~~~~~  443 (445)
T 3ryc_B          439 EEGED  443 (445)
T ss_dssp             -----
T ss_pred             hhhhh
Confidence            55543
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 5e-99
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 3e-93
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 5e-86
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 2e-66
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 4e-64
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 2e-62
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 3e-06
d1w5fa1194 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Th 3e-05
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 6e-05
d2vapa1209 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar 6e-04
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  287 bits (736), Expect = 5e-99
 Identities = 162/184 (88%), Positives = 178/184 (96%)

Query: 127 GQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAAC 186
           GQLN+DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LTVPEL QQMFDAKNMMAAC
Sbjct: 1   GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60

Query: 187 DPRHGKYLTVAAIFRGRMSMKEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPRGLKM 246
           DPRHG+YLTVAA+FRGRMSMKEVDEQMLN+QNKN+SYFVEWIPNN KTAVCDIPPRGLKM
Sbjct: 61  DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 120

Query: 247 AATFIGNTTAIQELFRRISDQFDSMYKRKAFLHWYLGEGMDEMEFTEAASNVLDLISEYQ 306
           +ATFIGN+TAIQELF+RIS+QF +M++RKAFLHWY GEGMDEMEFTEA SN+ DL+SEYQ
Sbjct: 121 SATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 180

Query: 307 QYQE 310
           QYQ+
Sbjct: 181 QYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Length = 194 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.36
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.31
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.3
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.24
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.1e-50  Score=349.80  Aligned_cols=186  Identities=38%  Similarity=0.740  Sum_probs=178.1

Q ss_pred             CCCchhhhhhccccccCCcccccccCcccccccCCcccccCCHHHHHHhhcccCccccccCCCCCceeeeeccccCCCCh
Q psy14216        127 GQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELVQQMFDAKNMMAACDPRHGKYLTVAAIFRGRMSM  206 (329)
Q Consensus       127 g~~~~~l~~l~~nLvP~p~~~fl~~~~~P~~~~~~~~~~~~t~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~  206 (329)
                      |.+|.||++|.+||||||++||++++++|+.+.....+++.+..++++++|++++++++|++.+|+|+++++++||++.+
T Consensus         1 G~lN~Dl~kl~tNLVPfPrlhFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~~~~~~~~~~~yls~~~~~RG~~~~   80 (195)
T d1tuba2           1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP   80 (195)
T ss_dssp             CSSCCCHHHHHHHHCSSSSCCCCBCCBCCCCCTTCCCSSSCCTTHHHHHHHSTTTCSSCCCTTSSCEEEEEEEEESSCCH
T ss_pred             CCCcchHHHhhccCCCCCcccchhccccccCchhhhhhhcCcHHHHHHHHhchhhhhcccCCCccHHHHHHHHHhCCCCc
Confidence            68999999999999999999999999999998877778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccccccccCCCceeeeecCCCC--------CCcceeeecccChhHHHHHHhhhhhhhcccccccce
Q psy14216        207 KEVDEQMLNIQNKNASYFVEWIPNNCKTAVCDIPPR--------GLKMAATFIGNTTAIQELFRRISDQFDSMYKRKAFL  278 (329)
Q Consensus       207 ~~i~~~~~~~k~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~I~~~l~~i~~~f~~m~~krAfl  278 (329)
                      +++.+.+.+++.++.++|++|+|+++++++|.++|.        +...++++|+|+|+|..+|+++.++|++||+|||||
T Consensus        81 ~ei~~~i~~ik~~~~~~fv~W~~~~~kv~~~~~~p~~~~~~~l~~~~~s~~~l~N~TsI~~~f~~i~~~Fdkl~~rkAfl  160 (195)
T d1tuba2          81 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV  160 (195)
T ss_dssp             HHHHHHHHHHTTSSTTCCCSSCSSCCEEEEESSCCCCCTGGGCCCCCCCCBEEEEETTHHHHHHHHHHHHHHHTTTTCCT
T ss_pred             chHHHHHHHHHHhCCcchhhhhccceeeeecCCCCccCCCcchhhhhhhhhHhcCChhHHHHHHHHHHHHHHHHhhchHH
Confidence            999999999999999999999999999999999885        556789999999999999999999999999999999


Q ss_pred             eccccCCCChhhHHHHHHHHHHHHHHHHHHhhhc
Q psy14216        279 HWYLGEGMDEMEFTEAASNVLDLISEYQQYQEAA  312 (329)
Q Consensus       279 H~Y~~~Gmee~ef~ea~~~l~~l~~~Y~~~~~~~  312 (329)
                      |||.++|||++||.||+++|++|+++|++++.++
T Consensus       161 h~Y~~egmee~eF~EA~e~l~~li~eY~~~~~~~  194 (195)
T d1tuba2         161 HWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS  194 (195)
T ss_dssp             TTGGGGSCCSSSSHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999998764
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure