Psyllid ID: psy14238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPLPP
ccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEEEEcccccEEEccccHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHcccccccHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccEEEcccEEEccccEHHHHHHHccEccccccEcHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHcccc
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKnygstkvgeVTVDMMYggmrgikglvcetsvldpeegirfrglsipecqkvlpkakggeeplpeGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLnnfpnhlhpmsQFSAAITALNSESKFAKayndgvhkskYWEYIQQPLPP
malvrisarsvadlHQISNFLRTFATDASTDLKAVLaakipseqervknfrknygstkvgevTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYweyiqqplpp
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPLPP
*******ARSVADLHQISNFLRTFATDASTDLKAVLAAKIP*****VKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPK******PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYI******
*****************************TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKA*NDGVHKSKYWEYIQQPLP*
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPLPP
*****I***********SNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPLPP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALVRISARSVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPLPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q17GM7 467 Probable citrate synthase N/A N/A 0.970 0.421 0.740 1e-84
Q16P20 467 Probable citrate synthase N/A N/A 0.970 0.421 0.740 1e-84
Q9W401 464 Probable citrate synthase yes N/A 0.975 0.426 0.693 6e-81
Q0QHL3 465 Probable citrate synthase N/A N/A 0.980 0.427 0.702 5e-80
Q6S9V5 469 Citrate synthase, mitocho N/A N/A 0.862 0.373 0.754 5e-77
Q6S9V8 469 Citrate synthase, mitocho N/A N/A 0.862 0.373 0.737 2e-76
Q6S9V9 469 Citrate synthase, mitocho N/A N/A 0.862 0.373 0.737 2e-76
Q6S9V6 469 Citrate synthase, mitocho N/A N/A 0.862 0.373 0.742 3e-76
Q6S9V7 469 Citrate synthase, mitocho N/A N/A 0.862 0.373 0.731 4e-76
Q4S5X1 469 Citrate synthase, mitocho N/A N/A 0.847 0.366 0.738 2e-75
>sp|Q17GM7|CISY1_AEDAE Probable citrate synthase 1, mitochondrial OS=Aedes aegypti GN=AAEL002956 PE=3 SV=1 Back     alignment and function desciption
 Score =  312 bits (799), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 151/204 (74%), Positives = 174/204 (85%), Gaps = 7/204 (3%)

Query: 1   MALVRISARSVADLHQ-----ISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYG 55
           MAL RI +  +A  ++     I+ ++R  A+D STDLKAVL+ KIP EQERVKNFRK +G
Sbjct: 1   MALSRIYSSKLASANKNLLPVITTYVRN-ASD-STDLKAVLSEKIPKEQERVKNFRKQFG 58

Query: 56  STKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLP 115
           +TKVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQKVLPKA GG EPLP
Sbjct: 59  ATKVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKVLPKAPGGAEPLP 118

Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
           EGLFWLL+TGDVP++AQV ALS+ WA+RA LPSHVVTMLNN P  LHPMSQ S A+TALN
Sbjct: 119 EGLFWLLITGDVPTKAQVDALSREWANRAALPSHVVTMLNNMPTTLHPMSQLSCAVTALN 178

Query: 176 SESKFAKAYNDGVHKSKYWEYIQQ 199
            ESK+AKAY++GVHKSKYWEY+ +
Sbjct: 179 HESKYAKAYSEGVHKSKYWEYVYE 202

Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|Q16P20|CISY2_AEDAE Probable citrate synthase 2, mitochondrial OS=Aedes aegypti GN=AAEL011789 PE=3 SV=1 Back     alignment and function description
>sp|Q9W401|CISY_DROME Probable citrate synthase, mitochondrial OS=Drosophila melanogaster GN=kdn PE=2 SV=1 Back     alignment and function description
>sp|Q0QHL3|CISY_GLOMM Probable citrate synthase, mitochondrial OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V5|CISY_TETAD Citrate synthase, mitochondrial OS=Tetrapturus audax GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V8|CISY_THUOB Citrate synthase, mitochondrial OS=Thunnus obesus GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V9|CISY_THUAL Citrate synthase, mitochondrial OS=Thunnus albacares GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V6|CISY_XIPGL Citrate synthase, mitochondrial OS=Xiphias gladius GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q6S9V7|CISY_KATPE Citrate synthase, mitochondrial OS=Katsuwonus pelamis GN=cs PE=2 SV=1 Back     alignment and function description
>sp|Q4S5X1|CISY_TETNG Citrate synthase, mitochondrial OS=Tetraodon nigroviridis GN=cs PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
91083623 466 PREDICTED: similar to citrate synthase [ 0.975 0.424 0.783 6e-88
158300600 466 AGAP012048-PA [Anopheles gambiae str. PE 0.970 0.422 0.756 1e-83
157133341 467 citrate synthase [Aedes aegypti] gi|1220 0.970 0.421 0.740 5e-83
157130536 467 citrate synthase [Aedes aegypti] gi|1571 0.970 0.421 0.740 5e-83
312382838 708 hypothetical protein AND_04269 [Anophele 0.891 0.255 0.792 3e-82
357612136 465 putative citrate synthase [Danaus plexip 0.975 0.425 0.709 3e-81
332373860 465 unknown [Dendroctonus ponderosae] 0.975 0.425 0.733 4e-81
321479194 473 hypothetical protein DAPPUDRAFT_299958 [ 0.970 0.416 0.731 7e-81
242016143 451 citrate synthase, putative [Pediculus hu 0.857 0.385 0.798 8e-80
350425352 463 PREDICTED: probable citrate synthase 2, 0.975 0.427 0.726 1e-79
>gi|91083623|ref|XP_970124.1| PREDICTED: similar to citrate synthase [Tribolium castaneum] gi|270006831|gb|EFA03279.1| hypothetical protein TcasGA2_TC013214 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 177/203 (87%), Gaps = 5/203 (2%)

Query: 1   MALVRISARSVAD----LHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGS 56
           MAL R +A  +A+    + QIS  LR   +DASTDLKAVLAAKIP EQERVKNFRKNYG+
Sbjct: 1   MALFRFTATKLAESQKIVPQISVVLRQL-SDASTDLKAVLAAKIPKEQERVKNFRKNYGN 59

Query: 57  TKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPE 116
            KVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQK+LPKA GG EPLPE
Sbjct: 60  QKVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKLLPKAPGGSEPLPE 119

Query: 117 GLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176
           GLFWLL+TGDVP+EAQV+A+SK WA RAELPSHVVT+LNN P ++HPMSQ SAAIT LNS
Sbjct: 120 GLFWLLITGDVPTEAQVRAISKEWAERAELPSHVVTLLNNLPTNVHPMSQLSAAITVLNS 179

Query: 177 ESKFAKAYNDGVHKSKYWEYIQQ 199
           ESKFAKAY+ GVHKSKYWEY+ +
Sbjct: 180 ESKFAKAYSSGVHKSKYWEYVYE 202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158300600|ref|XP_320478.4| AGAP012048-PA [Anopheles gambiae str. PEST] gi|157013238|gb|EAA00454.5| AGAP012048-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157133341|ref|XP_001656210.1| citrate synthase [Aedes aegypti] gi|122095223|sp|Q17GM7.1|CISY1_AEDAE RecName: Full=Probable citrate synthase 1, mitochondrial; Flags: Precursor gi|108881547|gb|EAT45772.1| AAEL002956-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157130536|ref|XP_001655738.1| citrate synthase [Aedes aegypti] gi|157130538|ref|XP_001655739.1| citrate synthase [Aedes aegypti] gi|122067459|sp|Q16P20.1|CISY2_AEDAE RecName: Full=Probable citrate synthase 2, mitochondrial; Flags: Precursor gi|108871873|gb|EAT36098.1| AAEL011789-PB [Aedes aegypti] gi|108871874|gb|EAT36099.1| AAEL011789-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|312382838|gb|EFR28146.1| hypothetical protein AND_04269 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|357612136|gb|EHJ67827.1| putative citrate synthase [Danaus plexippus] Back     alignment and taxonomy information
>gi|332373860|gb|AEE62071.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|321479194|gb|EFX90150.1| hypothetical protein DAPPUDRAFT_299958 [Daphnia pulex] Back     alignment and taxonomy information
>gi|242016143|ref|XP_002428695.1| citrate synthase, putative [Pediculus humanus corporis] gi|212513366|gb|EEB15957.1| citrate synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|350425352|ref|XP_003494094.1| PREDICTED: probable citrate synthase 2, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
UNIPROTKB|Q16P20 467 AAEL011789 "Probable citrate s 0.980 0.426 0.737 4.3e-77
UNIPROTKB|Q17GM7 467 AAEL002956 "Probable citrate s 0.980 0.426 0.737 4.3e-77
FB|FBgn0261955 464 kdn "knockdown" [Drosophila me 0.975 0.426 0.693 1.7e-73
UNIPROTKB|Q0QHL3 465 Q0QHL3 "Probable citrate synth 0.980 0.427 0.702 7.5e-73
UNIPROTKB|Q6S9V5 469 cs "Citrate synthase, mitochon 0.862 0.373 0.754 4.3e-70
UNIPROTKB|Q6S9V8 469 cs "Citrate synthase, mitochon 0.862 0.373 0.737 1.8e-69
UNIPROTKB|Q6S9V9 469 cs "Citrate synthase, mitochon 0.862 0.373 0.737 1.8e-69
UNIPROTKB|Q6S9V6 469 cs "Citrate synthase, mitochon 0.862 0.373 0.742 2.4e-69
UNIPROTKB|Q6S9V7 469 cs "Citrate synthase, mitochon 0.862 0.373 0.731 3e-69
UNIPROTKB|Q4S5X1 469 cs "Citrate synthase, mitochon 0.847 0.366 0.738 1.3e-68
UNIPROTKB|Q16P20 AAEL011789 "Probable citrate synthase 2, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 149/202 (73%), Positives = 172/202 (85%)

Query:     1 MALVRISARSVADLHQ-ISNFLRTFATDAS--TDLKAVLAAKIPSEQERVKNFRKNYGST 57
             MAL RI +  +A  ++ +   + T+  +AS  TDLKAVL+ KIP EQERVKNFRK +G+T
Sbjct:     1 MALSRIYSSKLASANKNLLPVITTYVRNASDSTDLKAVLSEKIPKEQERVKNFRKQFGAT 60

Query:    58 KVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEG 117
             KVGEVTVDMMYGGMRGIKGLVCETSVLDP+EGIRFRGLSIPECQKVLPKA GG EPLPEG
Sbjct:    61 KVGEVTVDMMYGGMRGIKGLVCETSVLDPDEGIRFRGLSIPECQKVLPKAPGGAEPLPEG 120

Query:   118 LFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177
             LFWLL+TGDVP++AQV ALS+ WA+RA LPSHVVTMLNN P  LHPMSQ S A+TALN E
Sbjct:   121 LFWLLITGDVPTKAQVDALSREWANRAALPSHVVTMLNNMPTTLHPMSQLSCAVTALNHE 180

Query:   178 SKFAKAYNDGVHKSKYWEYIQQ 199
             SK+AKAY++GVHKSKYWEY+ +
Sbjct:   181 SKYAKAYSEGVHKSKYWEYVYE 202
GO:0004108 "citrate (Si)-synthase activity" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=ISS
UNIPROTKB|Q17GM7 AAEL002956 "Probable citrate synthase 1, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0261955 kdn "knockdown" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QHL3 Q0QHL3 "Probable citrate synthase, mitochondrial" [Glossina morsitans morsitans (taxid:37546)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V5 cs "Citrate synthase, mitochondrial" [Kajikia audax (taxid:13721)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V8 cs "Citrate synthase, mitochondrial" [Thunnus obesus (taxid:8241)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V9 cs "Citrate synthase, mitochondrial" [Thunnus albacares (taxid:8236)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V6 cs "Citrate synthase, mitochondrial" [Xiphias gladius (taxid:8245)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V7 cs "Citrate synthase, mitochondrial" [Katsuwonus pelamis (taxid:8226)] Back     alignment and assigned GO terms
UNIPROTKB|Q4S5X1 cs "Citrate synthase, mitochondrial" [Tetraodon nigroviridis (taxid:99883)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9W401CISY_DROME2, ., 3, ., 3, ., 10.69300.97530.4267yesN/A
P23007CISY_CHICK2, ., 3, ., 3, ., 10.70340.84720.3972yesN/A
Q29RK1CISY_BOVIN2, ., 3, ., 3, ., 10.720.86200.3755yesN/A
Q7ZVY5CISY_DANRE2, ., 3, ., 3, ., 10.64320.98020.4252yesN/A
P34575CISY_CAEEL2, ., 3, ., 3, ., 10.61730.95560.4145yesN/A
Q9CZU6CISY_MOUSE2, ., 3, ., 3, ., 10.71420.86200.3771yesN/A
O00098CISY_EMENI2, ., 3, ., 3, ., 10.58980.87680.3755yesN/A
P20115CISY4_ARATH2, ., 3, ., 3, ., 10.52550.95560.4092yesN/A
Q10306CISY_SCHPO2, ., 3, ., 3, ., 10.55750.81280.3416yesN/A
P00889CISY_PIG2, ., 3, ., 3, ., 10.73140.86200.3771yesN/A
O75390CISY_HUMAN2, ., 3, ., 3, ., 10.720.86200.3755yesN/A
P51044CISY_ASPNG2, ., 3, ., 3, ., 10.57860.87680.3747yesN/A
Q28DK1CISY_XENTR2, ., 3, ., 3, ., 10.65120.96050.4166yesN/A
Q8VHF5CISY_RAT2, ., 3, ., 3, ., 10.720.86200.3755yesN/A
P00890CISY1_YEAST2, ., 3, ., 3, ., 10.58280.86200.3653yesN/A
Q553V1CISYM_DICDI2, ., 3, ., 3, ., 10.57290.90140.3978yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
cd06105 427 cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( 1e-115
TIGR01793 427 TIGR01793, cit_synth_euk, citrate (Si)-synthase, e 5e-96
cd06103 426 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) 2e-92
cd06106 428 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc 3e-70
PRK09569 437 PRK09569, PRK09569, type I citrate synthase; Revie 5e-59
PLN02456 455 PLN02456, PLN02456, citrate synthase 2e-51
cd06118 358 cd06118, citrate_synt_like_1, Citrate synthase (CS 1e-28
pfam00285 352 pfam00285, Citrate_synt, Citrate synthase 5e-21
COG0372 390 COG0372, GltA, Citrate synthase [Energy production 7e-20
cd06101 265 cd06101, citrate_synt, Citrate synthase (CS) catal 5e-09
cd06114 400 cd06114, EcCS_like, Escherichia coli (Ec) citrate 2e-08
TIGR01800 368 TIGR01800, cit_synth_II, 2-methylcitrate synthase/ 7e-07
PRK12349 369 PRK12349, PRK12349, citrate synthase 3; Provisiona 2e-06
cd06112 373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 8e-06
cd06110 356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 1e-05
cd06115 410 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath 2e-04
cd06107 382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 3e-04
cd06111 362 cd06111, DsCS_like, Cold-active citrate synthase ( 0.003
PRK14034 372 PRK14034, PRK14034, citrate synthase; Provisional 0.004
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information 
 Score =  334 bits (859), Expect = e-115
 Identities = 133/166 (80%), Positives = 147/166 (88%)

Query: 32  LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIR 91
           LK  LA  IP EQ R+K FRK +G T VGEVTVDM+YGGMRGIKGLV ETSVLDPEEGIR
Sbjct: 1   LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIR 60

Query: 92  FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVV 151
           FRGLSIPECQK+LPKA GGEEPLPEGLFWLL+TG+VP++ QV ALSK WA+RA LPSHVV
Sbjct: 61  FRGLSIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVV 120

Query: 152 TMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYI 197
           TML+NFP +LHPMSQ SAAITALNSESKFAKAY +G+HKSKYWEY+
Sbjct: 121 TMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYV 166

Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). ScCit1 is a nuclear-encoded mitochondrial CS with highly specificity for AcCoA. In addition to its CS function, ScCit1 plays a part in the construction of the TCA cycle metabolon. Yeast cells deleted for Cit1 are hyper-susceptible to apoptosis induced by heat and aging stress. ScCit2 is a peroxisomal CS involved in the glyoxylate cycle; in addition to having activity with AcCoA, it may have activity with PrCoA. Chicken and pig heart CS, two Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and Aspergillus niger (An) CS also belong to this group. Ath CSY4 has a mitochondrial targeting sequence; AthCSY5 has no identifiable targeting sequence. AnCS encoded by the citA gene has both an N-terminal mitochondrial import signal and a C-terminal peroxisiomal target sequence; it is not known if both these signals are functional in vivo. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Length = 427
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
TIGR01793 427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
KOG2617|consensus 458 100.0
cd06105 427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
PRK09569 437 type I citrate synthase; Reviewed 100.0
cd06106 428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
cd06103 426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
PLN02456 455 citrate synthase 100.0
cd06115 410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 99.97
cd06107 382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 99.97
TIGR01798 412 cit_synth_I citrate synthase I (hexameric type). T 99.97
PRK05614 419 gltA type II citrate synthase; Reviewed 99.96
cd06116 384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 99.96
cd06112 373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 99.95
cd06108 363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 99.95
cd06117 366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 99.94
cd06114 400 EcCS_like Escherichia coli (Ec) citrate synthase ( 99.94
PRK14036 377 citrate synthase; Provisional 99.94
PF00285 356 Citrate_synt: Citrate synthase; InterPro: IPR00202 99.94
PRK12351 378 methylcitrate synthase; Provisional 99.94
cd06109 349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 99.94
PRK14037 377 citrate synthase; Provisional 99.93
PRK14034 372 citrate synthase; Provisional 99.93
PRK14032 447 citrate synthase; Provisional 99.93
PRK14035 371 citrate synthase; Provisional 99.93
PRK12349 369 citrate synthase 3; Provisional 99.93
cd06113 406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 99.92
cd06118 358 citrate_synt_like_1 Citrate synthase (CS) catalyze 99.92
COG0372 390 GltA Citrate synthase [Energy production and conve 99.91
TIGR01800 368 cit_synth_II 2-methylcitrate synthase/citrate synt 99.91
cd06111 362 DsCS_like Cold-active citrate synthase (CS) from a 99.9
cd06110 356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 99.9
PRK14033 375 citrate synthase; Provisional 99.89
PRK12350 353 citrate synthase 2; Provisional 99.75
cd06101 265 citrate_synt Citrate synthase (CS) catalyzes the c 99.62
PRK06224 263 citrate synthase; Provisional 99.42
cd06102 282 citrate_synt_like_2 Citrate synthase (CS) catalyze 98.96
PLN02522 608 ATP citrate (pro-S)-lyase 98.67
cd06100 227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 98.47
cd06099 213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 94.67
PRK14037 377 citrate synthase; Provisional 93.69
PRK14034 372 citrate synthase; Provisional 90.4
PRK14035 371 citrate synthase; Provisional 90.37
cd06112 373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 90.36
PRK12349 369 citrate synthase 3; Provisional 89.69
PRK14036 377 citrate synthase; Provisional 89.59
PRK14033 375 citrate synthase; Provisional 86.88
cd06111 362 DsCS_like Cold-active citrate synthase (CS) from a 86.66
cd06113 406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 86.01
KOG2617|consensus458 85.43
PRK12351 378 methylcitrate synthase; Provisional 85.33
TIGR01800 368 cit_synth_II 2-methylcitrate synthase/citrate synt 85.18
PRK14032 447 citrate synthase; Provisional 84.59
cd06108 363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 84.26
cd06118 358 citrate_synt_like_1 Citrate synthase (CS) catalyze 83.24
PF00285 356 Citrate_synt: Citrate synthase; InterPro: IPR00202 82.93
cd06110 356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 82.57
cd06117 366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 82.47
cd06109 349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 81.82
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information 
Probab=100.00  E-value=9.7e-48  Score=356.13  Aligned_cols=172  Identities=65%  Similarity=1.116  Sum_probs=167.2

Q ss_pred             hhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCC
Q psy14238         30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG  109 (203)
Q Consensus        30 ~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~  109 (203)
                      ++||++++++||.++++++.|++.||+++||++|+|+.++||||++++.|+||+|||++||+||||+|+||++.+|+.++
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~   81 (427)
T TIGR01793         2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG   81 (427)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999987777778


Q ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCC
Q psy14238        110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH  189 (203)
Q Consensus       110 ~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~  189 (203)
                      +++|.||||+||||+|+|||.+|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+.+|.|+++|.+|++
T Consensus        82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~  161 (427)
T TIGR01793        82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH  161 (427)
T ss_pred             cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccCCC
Q psy14238        190 KSKYWEYIQQPL  201 (203)
Q Consensus       190 k~~yW~~~~eD~  201 (203)
                      |.+||++.+||+
T Consensus       162 ~~~~~~~~~e~~  173 (427)
T TIGR01793       162 KTKYWEYTYEDS  173 (427)
T ss_pred             ccccHHHHHHHH
Confidence            999999999885

This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
>KOG2617|consensus Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>KOG2617|consensus Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
2cts_A 437 Crystallographic Refinement And Atomic Models Of Tw 9e-76
4cts_A 437 Crystal Structure Analysis And Molecular Model Of A 1e-75
6csc_A 437 Chicken Citrate Synthase Complex With Trifluoroacet 7e-73
1amz_A 435 Chicken Citrate Synthase Complex With Nitromethylde 1e-72
1csc_A 433 Structure Of Ternary Complexes Of Citrate Synthase 4e-71
5csc_B 429 Structure Of An Open Form Of Chicken Heart Citrate 1e-63
2c6x_A 363 Structure Of Bacillus Subtilis Citrate Synthase Len 7e-05
1iom_A 377 Crystal Structure Of Citrate Synthase From Thermus 5e-04
2p2w_A 367 Crystal Structure Of Citrate Synthase From Thermoto 6e-04
3msu_A 427 Crystal Structure Of Citrate Synthase From Francise 6e-04
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (713), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 127/172 (73%), Positives = 149/172 (86%)
Query: 28  ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
           +ST+LK +LA  IP EQ R+K FR+ +G+T VG++TVDMMYGGMRG+KGLV ETSVLDP+
Sbjct: 2   SSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDPD 61
Query: 88  EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
           EGIRFRG SIPECQK+LPKAKGGEEPLPEGLFWLLVTG +P+E QV  LSK WA RA LP
Sbjct: 62  EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQ 199
           SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE I +
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYE 173
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 Back     alignment and structure
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 Back     alignment and structure
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 Back     alignment and structure
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 Back     alignment and structure
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1csh_A 435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 6e-87
2h12_A 436 Citrate synthase; acidophIle, acetic acid resistan 1e-08
1o7x_A 377 Citrate synthase; lyase, tricarboxylic acid cycle; 4e-08
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 4e-08
3msu_A 427 Citrate synthase; helix bundle, APHA-beta fold, cs 6e-08
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 7e-08
1vgm_A 378 378AA long hypothetical citrate synthase; open for 9e-08
3l96_A 426 Citrate synthase; quaternary, hexamer, GRAM-negati 1e-07
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 2e-07
3tqg_A 375 2-methylcitrate synthase; energy metabolism, trans 2e-07
3hwk_A 414 Methylcitrate synthase; niaid, ssgcid, structural 2e-07
2c6x_A 363 Citrate synthase 1; tricarboxylic acid cycle, tran 6e-07
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 6e-07
1vgp_A 373 373AA long hypothetical citrate synthase; open for 2e-06
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 2e-06
2p2w_A 367 Citrate synthase; transferase, structural genomics 2e-06
1iom_A 377 Citrate synthase; open form, riken structural geno 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
 Score =  261 bits (670), Expect = 6e-87
 Identities = 121/169 (71%), Positives = 146/169 (86%)

Query: 29  STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
           ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1   STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60

Query: 89  GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
           GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+  QV  +SK WA RA LPS
Sbjct: 61  GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120

Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYI 197
           HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE++
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFV 169
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
1csh_A 435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3msu_A 427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
3l96_A 426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 99.98
2h12_A 436 Citrate synthase; acidophIle, acetic acid resistan 99.97
3hwk_A 414 Methylcitrate synthase; niaid, ssgcid, structural 99.97
3tqg_A 375 2-methylcitrate synthase; energy metabolism, trans 99.97
1vgm_A 378 378AA long hypothetical citrate synthase; open for 99.96
1iom_A 377 Citrate synthase; open form, riken structural geno 99.96
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 99.96
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 99.95
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 99.95
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 99.95
1o7x_A 377 Citrate synthase; lyase, tricarboxylic acid cycle; 99.95
2c6x_A 363 Citrate synthase 1; tricarboxylic acid cycle, tran 99.95
1vgp_A 373 373AA long hypothetical citrate synthase; open for 99.95
2p2w_A 367 Citrate synthase; transferase, structural genomics 99.95
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 87.76
3tqg_A 375 2-methylcitrate synthase; energy metabolism, trans 86.34
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 86.29
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 86.12
1iom_A 377 Citrate synthase; open form, riken structural geno 86.08
1vgp_A 373 373AA long hypothetical citrate synthase; open for 85.21
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 85.08
1vgm_A 378 378AA long hypothetical citrate synthase; open for 84.89
3hwk_A 414 Methylcitrate synthase; niaid, ssgcid, structural 83.84
2c6x_A 363 Citrate synthase 1; tricarboxylic acid cycle, tran 81.77
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 81.74
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
Probab=100.00  E-value=3.6e-45  Score=338.56  Aligned_cols=171  Identities=70%  Similarity=1.201  Sum_probs=165.5

Q ss_pred             hhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCC
Q psy14238         30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG  109 (203)
Q Consensus        30 ~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~  109 (203)
                      ++||++|+++||.++++++.+++.||+++||.+|+||.++|++|+.++.|+||+|||++||+||||+|+||++++||.++
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~   81 (435)
T 1csh_A            2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG   81 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCC
Q psy14238        110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH  189 (203)
Q Consensus       110 ~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~  189 (203)
                      +.+++||||+||||+|+|||++|+++|+++|..++.+|+.+.++|++||+++|||++|+++|++|++.++|+.+|+.+.+
T Consensus        82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~  161 (435)
T 1csh_A           82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN  161 (435)
T ss_dssp             CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred             CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccCC
Q psy14238        190 KSKYWEYIQQP  200 (203)
Q Consensus       190 k~~yW~~~~eD  200 (203)
                      +.+||++.+++
T Consensus       162 ~~~~~~~~~~~  172 (435)
T 1csh_A          162 RTKYWEFVYED  172 (435)
T ss_dssp             GGGHHHHHHHH
T ss_pred             ccccHHHHHHH
Confidence            99999988775
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1csha_ 435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 2e-66
d1o7xa_ 367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 3e-17
d1a59a_ 377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 2e-15
d1ioma_ 374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 6e-14
d1aj8a_ 371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 1e-12
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  208 bits (530), Expect = 2e-66
 Identities = 121/171 (70%), Positives = 147/171 (85%)

Query: 29  STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
           ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1   STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60

Query: 89  GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
           GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+  QV  +SK WA RA LPS
Sbjct: 61  GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120

Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQ 199
           HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE++ +
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYE 171
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1csha_ 435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1k3pa_ 426 Citrate synthase {Escherichia coli [TaxId: 562]} 99.97
d1o7xa_ 367 Citrate synthase {Archaeon Sulfolobus solfataricus 99.94
d1ioma_ 374 Citrate synthase {Thermus thermophilus [TaxId: 274 99.94
d1a59a_ 377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 99.93
d1aj8a_ 371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 99.93
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.6e-50  Score=368.80  Aligned_cols=173  Identities=70%  Similarity=1.189  Sum_probs=169.1

Q ss_pred             chhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCC
Q psy14238         29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAK  108 (203)
Q Consensus        29 ~~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~  108 (203)
                      +++||++|+++||.+++++++|+++||++++|++|+|++|+||||++++.|+||+|||++||+||||+|+||++.+||..
T Consensus         1 ~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~it~d~~~~Glrg~~~~~t~iS~iDg~~Gi~YRGy~I~eL~~~l~k~~   80 (435)
T d1csha_           1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAG   80 (435)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeecccccccCCCceeEEeceeEcCccceeECCccHHHHHHHhhccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccC
Q psy14238        109 GGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGV  188 (203)
Q Consensus       109 ~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~  188 (203)
                      ++++++||||+||||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|++.+.|+..|.+|+
T Consensus        81 ~~e~~~fEEV~yLLl~GeLPt~~EL~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~  160 (435)
T d1csha_          81 GGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGI  160 (435)
T ss_dssp             TCCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTC
T ss_pred             ccccCcHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhcCCccHHHHHHHHHHHhhccCccchhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCcccccCCC
Q psy14238        189 HKSKYWEYIQQPL  201 (203)
Q Consensus       189 ~k~~yW~~~~eD~  201 (203)
                      ++.+||+++++|+
T Consensus       161 ~~~~~~e~~~~~a  173 (435)
T d1csha_         161 NRTKYWEFVYEDA  173 (435)
T ss_dssp             CGGGHHHHHHHHH
T ss_pred             cccccHHHHHHHH
Confidence            9999999998864
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure