Psyllid ID: psy1424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDRDRRHR
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHcccccHHHHHHcEEEEEEEccHHHHHHHHHHHHccHHHHHHHccccccEEEEHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
ccccccHcHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHEEccccccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHccccEccEEccccccHHHHHHHccccccccccHHHHHHccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
manrtvkdaksvrgtnpqYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIggvfggnikptPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRltgssvdcykyleplfadsRKLRFQNRQGAFEVIHMDEYIDQLLREERMCdvilpriqkrhvleenneiEVKVSIldddiddggssssedeneeagevydknrmdvdtyhsskydshhrdpdkerdrryrseksTKERVRERSrskerdrrhrsksprhkdrdydrdrykdyerekyrsdrdrgdrrdrgdrdrrhr
Flexible Loop (DISEMBL)
manrtvkdaksvrgtnpqyliEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILpriqkrhvleenneievkvsildddiddggssssedeneeagevydknrmdvdtyhsskydshhrdpdkerdrryrsekstkervrersrskerdrrhrsksprhkdrdydrdrykdyerekyrsdrdrgdrrdrgdrdrrhr
Low Complexity Region (SEG)
MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVsildddiddggssssedeneeageVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYrsekstkervrersrskerdrrhrsksPRHkdrdydrdrykdyerekyrSdrdrgdrrdrgdrdrrHR
Disordered region (IsUnstruct)
****************PQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSIL*************************************************************************************************************************
Disordered Region (DISOPRED)
***R**KDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVS***************************************************************************************************************************
Disordered Region (DISEMBL)
***********VRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSILDDDI****************EVYDKNRMDVDTYH*******************************************************RDRYKDYERE**********************
Disordered Region (DISPRO)
*******D*K*VRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSIL*************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDRDRRHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q28H87	312	Pre-mRNA-splicing factor	yes	N/A	0.616	0.602	0.755	1e-85
Q4FZQ6	312	Pre-mRNA-splicing factor	N/A	N/A	0.616	0.602	0.755	1e-85
Q5RDD2	312	Pre-mRNA-splicing factor	yes	N/A	0.616	0.602	0.739	6e-85
Q8HXH6	312	Pre-mRNA-splicing factor	N/A	N/A	0.616	0.602	0.739	6e-85
Q8NAV1	312	Pre-mRNA-splicing factor	yes	N/A	0.616	0.602	0.739	6e-85
Q0P5I6	312	Pre-mRNA-splicing factor	yes	N/A	0.616	0.602	0.739	6e-85
Q6DHU4	313	Pre-mRNA-splicing factor	yes	N/A	0.616	0.600	0.739	2e-84
Q4FK66	312	Pre-mRNA-splicing factor	yes	N/A	0.616	0.602	0.723	9e-83
Q9UUD2	210	Pre-mRNA-splicing factor	yes	N/A	0.491	0.714	0.493	3e-36
Q80SY5	542	Pre-mRNA-splicing factor	no	N/A	0.304	0.171	0.252	9e-05

>sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 142/188 (75%), Positives = 169/188 (89%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+Y+GGV
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG++ DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTGTATDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+IDQLL EER+CDVILPR+QKR VLEE  +++ +
Sbjct: 121 EPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.
Xenopus tropicalis (taxid: 8364)

>sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 142/188 (75%), Positives = 170/188 (90%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVRALGA YMRLTG++ DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+IDQLL EER+CDVILPR+QKR VLEE  +++ +
Sbjct: 121 EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 170/188 (90%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 170/188 (90%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Macaca fascicularis (taxid: 9541)

>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 170/188 (90%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q0P5I6|PR38A_BOVIN Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1

 Score =  314 bits (804), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 170/188 (90%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 168/188 (89%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1   MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+SVDCYKYL
Sbjct: 61  YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G FE++H+DE+ID+LL  ERMCD+ILPR+QKR VLEE   ++ +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180

Query: 181 VSILDDDI 188
           +S L++D+
Sbjct: 181 ISALEEDL 188

May be required for pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1

 Score =  306 bits (785), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 168/188 (89%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D RK++ QNR G F ++H+DE+I +LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 VSILDDDI 188
           VS L++D+
Sbjct: 181 VSALEEDM 188

May be required for pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9UUD2|PRP38_SCHPO Pre-mRNA-splicing factor 38 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp38 PE=3 SV=1

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 2/152 (1%)

Query: 17  PQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILK 76
           P +LI KI+R RI DS YWKE+CF L+A  LVD+A+ L YIGG +G N +PT F+CL+ K
Sbjct: 21  PTFLIGKILRERIVDSIYWKEQCFGLNACSLVDRAVRLEYIGGQYG-NQRPTEFICLLYK 79

Query: 77  MLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQ 136
           +LQI PEK+I+ +++   EFKY+RAL A+Y+RLT   V+ ++ LEPL  D RKLR +   
Sbjct: 80  LLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEVHQTLEPLLRDYRKLRIRT-N 138

Query: 137 GAFEVIHMDEYIDQLLREERMCDVILPRIQKR 168
               + ++DE +D LL  E +CD+ LP ++ R
Sbjct: 139 SEIRLTYLDEVVDDLLNAEVVCDISLPPLRSR 170

Required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels. Implicated in the formation of stable and biologically active snRNP structures. As part of the U4/U6.U5 tri-snRNP particle, dispensible for spliceosome assembly, but required for conformational changes, which result in U4 snRNA release and the subsequent catalytic activation of the spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1

 Score = 47.8 bits (112), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 71  LCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKL 130
            CL+ K+  ++  +  V+  I + +  Y+RALG  Y+R T    D + + E    D   L
Sbjct: 130 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 189

Query: 131 RFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
               + G   V+ + E +   L +      + PRI
Sbjct: 190 DV--KAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 222

May be required for pre-mRNA splicing.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
307209857	304	Pre-mRNA-splicing factor 38A [Harpegnath	0.675	0.677	0.830	2e-99
157105718	359	hypothetical protein AaeL_AAEL004355 [Ae	0.963	0.818	0.634	5e-98
328788407	300	PREDICTED: pre-mRNA-splicing factor 38A-	0.652	0.663	0.85	6e-98
340714586	301	PREDICTED: pre-mRNA-splicing factor 38A-	0.652	0.661	0.844	2e-97
332016301	295	Pre-mRNA-splicing factor 38A [Acromyrmex	0.626	0.647	0.858	2e-97
383863753	303	PREDICTED: pre-mRNA-splicing factor 38A-	0.652	0.656	0.85	3e-97
307187747	305	Pre-mRNA-splicing factor 38A [Camponotus	0.626	0.626	0.858	5e-97
322799265	307	hypothetical protein SINV_03612 [Solenop	0.626	0.622	0.863	5e-97
345498292	282	PREDICTED: pre-mRNA-splicing factor 38A-	0.688	0.744	0.793	2e-96
158302472	360	AGAP001145-PA [Anopheles gambiae str. PE	0.655	0.555	0.826	2e-95

>gi|307209857|gb|EFN86636.1| Pre-mRNA-splicing factor 38A [Harpegnathos saltator]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/206 (83%), Positives = 191/206 (92%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+RIYDSKYWKEECFAL+AELLVDKAMELRYIGGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRYIGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG +E+IHMDE+ID LLREER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRMQNKQGVYELIHMDEFIDNLLREERSCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDGGSSSSEDENEEAGEV 206
           +S L+DD+DDG  SS ++E   + EV
Sbjct: 181 ISALEDDMDDGIESSEDEEIVPSKEV 206

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105718|ref|XP_001648995.1| hypothetical protein AaeL_AAEL004355 [Aedes aegypti] gi|108880026|gb|EAT44251.1| AAEL004355-PA [Aedes aegypti]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 193/304 (63%), Positives = 230/304 (75%), Gaps = 10/304 (3%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAK+V GTNPQYLIEKIIR+RIYDSKYWKE+CFAL+AELLVDKAM++RY+GGV
Sbjct: 1   MANRTVKDAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMDIRYLGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           FGGNIKPTPFLCL LKMLQIQPEKDIVVEFIKNEEFKYVRALGA+Y+RLTGSS+DCYKYL
Sbjct: 61  FGGNIKPTPFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D+RKLR QNR G +E++HMDE+ID+LLREER CD+ILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLYNDNRKLRRQNRLGHYELVHMDEFIDELLREERACDIILPRIQKRHVLEENNELEPK 180

Query: 181 VSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSE 240
           VS LDDD+D+     S+DEN E      K +       + +     +     RDR    E
Sbjct: 181 VSALDDDLDE--EMPSDDENLEEIAEALKAKEKEKKMETIRIRGGGK-----RDRSESRE 233

Query: 241 KSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDR-GD 299
           +  K    E+++   R+ + R    RH  RDYDR R +DYER +  +D    DR  R  +
Sbjct: 234 RQEKVVAVEKTKDVTREHKERGDPERH--RDYDRGRERDYERREPPADTRHKDREVREKE 291

Query: 300 RDRR 303
           RDR+
Sbjct: 292 RDRQ 295

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788407|ref|XP_003251125.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Apis mellifera] gi|380025942|ref|XP_003696721.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Apis florea]

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 170/200 (85%), Positives = 189/200 (94%), Gaps = 1/200 (0%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+R+YDSKYWKEECFAL+AELLVDKAMELRYIGGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRVYDSKYWKEECFALTAELLVDKAMELRYIGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG FE+IHMDE+ID LLREER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRRQNKQGKFELIHMDEFIDDLLREERCCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDGGSSSSEDEN 200
           +S L+DD+D+ G  SSEDE+
Sbjct: 181 ISALEDDMDE-GIESSEDED 199

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714586|ref|XP_003395808.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Bombus terrestris] gi|350411175|ref|XP_003489263.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Bombus impatiens]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/199 (84%), Positives = 188/199 (94%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+R+YDSKYWKEECFAL+AELLVDKAMELRYIGGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRVYDSKYWKEECFALTAELLVDKAMELRYIGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG FE+I+MDE+ID LLREER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRRQNKQGKFELINMDEFIDDLLREERCCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDGGSSSSEDE 199
           VS L+DD+D+G  SS ++E
Sbjct: 181 VSALEDDMDEGIESSEDEE 199

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016301|gb|EGI57214.1| Pre-mRNA-splicing factor 38A [Acromyrmex echinatior]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 183/191 (95%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYLIEKIIR+RIYDSKYWKEECFAL+AELLVDKAMELR++GGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRFLGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG FE++HMDE+ID LLR+ER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRIQNKQGVFELVHMDEFIDNLLRDERCCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDG 191
           +S L+DD+DDG
Sbjct: 181 ISALEDDMDDG 191

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863753|ref|XP_003707344.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Megachile rotundata]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/200 (85%), Positives = 189/200 (94%), Gaps = 1/200 (0%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+R+YDSKYWKEECFAL+AELLVDKAMELRYIGGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRVYDSKYWKEECFALTAELLVDKAMELRYIGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN++G FE+IHMDE+ID LLREER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRRQNKEGKFELIHMDEFIDDLLREERCCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDGGSSSSEDEN 200
           VS L+DD+D+ G  SSEDE+
Sbjct: 181 VSALEDDMDE-GIESSEDED 199

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187747|gb|EFN72719.1| Pre-mRNA-splicing factor 38A [Camponotus floridanus]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 183/191 (95%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+RIYDSKYWKEECFAL+AELLVDKAMELR++GGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRFLGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG FE+IHMDE+ID LLREER CDVILPRIQKR+VLEENNE+E K
Sbjct: 121 EPLFNDNRKLRIQNKQGVFELIHMDEFIDHLLREERCCDVILPRIQKRYVLEENNELEAK 180

Query: 181 VSILDDDIDDG 191
           +S L+DD+DDG
Sbjct: 181 ISALEDDMDDG 191

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799265|gb|EFZ20656.1| hypothetical protein SINV_03612 [Solenopsis invicta]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 165/191 (86%), Positives = 182/191 (95%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYLIEKIIR+RIYDSKYWKEECFAL+AELLVDKAMELR++GGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLIEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRFLGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           +GGN+KPTPFLCLILKMLQIQPEKDI+VEFIKNEE+KYVRALGA YMRLTGSS+DCYKYL
Sbjct: 61  YGGNVKPTPFLCLILKMLQIQPEKDIIVEFIKNEEYKYVRALGALYMRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPLF D+RKLR QN+QG FE+IHMDE ID LLREER CDVILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLFNDNRKLRIQNKQGVFELIHMDELIDHLLREERCCDVILPRIQKRHVLEENNELEAK 180

Query: 181 VSILDDDIDDG 191
           +S L+DD+DDG
Sbjct: 181 ISALEDDMDDG 191

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498292|ref|XP_001606816.2| PREDICTED: pre-mRNA-splicing factor 38A-like [Nasonia vitripennis]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/213 (79%), Positives = 192/213 (90%), Gaps = 3/213 (1%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAKS+RGTNPQYL+EKIIR+RIYDSKYWKEECFAL+AELLVDKAMELR+IGGV
Sbjct: 1   MANRTVKDAKSIRGTNPQYLVEKIIRSRIYDSKYWKEECFALTAELLVDKAMELRFIGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           FGGNIKPTPFLCLILKMLQIQPEKDI+VEFIKNEEFKYVRALGA+YMRLTG+S+DCY+YL
Sbjct: 61  FGGNIKPTPFLCLILKMLQIQPEKDIIVEFIKNEEFKYVRALGAFYMRLTGTSLDCYRYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL  D RKLR QNRQG FE+IH+DE+ID LLR ER CD+ILPRIQKRHVLEENNE+E +
Sbjct: 121 EPLLNDYRKLRKQNRQGQFEIIHVDEFIDDLLRAERCCDIILPRIQKRHVLEENNELEPR 180

Query: 181 VSILDDDIDDGGSSSSEDENEEAGEVYDKNRMD 213
           VS L+DDID+   SS   E+EE   + ++ R+D
Sbjct: 181 VSALEDDIDENLESS---EDEEIAPIIERKRVD 210

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158302472|ref|XP_322016.4| AGAP001145-PA [Anopheles gambiae str. PEST] gi|157012969|gb|EAA01014.4| AGAP001145-PA [Anopheles gambiae str. PEST]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 167/202 (82%), Positives = 188/202 (93%), Gaps = 2/202 (0%)

Query: 1   MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
           MANRTVKDAK+V GTNPQYLIEKIIR+RIYDSKYWKE+CFAL+AELLVDKAMELR++GGV
Sbjct: 1   MANRTVKDAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
           FGGNIKPTPFLCL LKMLQIQPEKDIVVEFIKNEEFKYVRALGA+Y+RLTGSS+DCYKYL
Sbjct: 61  FGGNIKPTPFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGSSLDCYKYL 120

Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
           EPL+ D+RKLR QNR GA+E+IHMDE+ID+LLREER+CD+ILPRIQKRHVLEENNE+E K
Sbjct: 121 EPLYNDNRKLRKQNRMGAYELIHMDEFIDELLREERVCDIILPRIQKRHVLEENNELEPK 180

Query: 181 VSILDDDIDDGGSSSSEDENEE 202
           VS L+DD+D+     SEDE  E
Sbjct: 181 VSALEDDLDE--EMPSEDEAVE 200

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
FB|FBgn0050342	330	Prp38 "pre-mRNA processing fac	0.593	0.548	0.817	6.5e-83
UNIPROTKB|Q0P5I6	312	PRPF38A "Pre-mRNA-splicing fac	0.593	0.580	0.751	1.2e-77
UNIPROTKB|Q8NAV1	312	PRPF38A "Pre-mRNA-splicing fac	0.593	0.580	0.751	1.2e-77
ZFIN|ZDB-GENE-040801-225	313	prpf38a "PRP38 pre-mRNA proces	0.593	0.578	0.751	6.6e-77
MGI|MGI:1916962	312	Prpf38a "PRP38 pre-mRNA proces	0.593	0.580	0.734	1.2e-75
WB|WBGene00008380	320	prp-38 [Caenorhabditis elegans	0.567	0.540	0.716	8.7e-69
TAIR|locus:2064811	355	AT2G40650 [Arabidopsis thalian	0.767	0.659	0.508	2e-61
GENEDB_PFALCIPARUM|PF11_0336	386	PF11_0336 "hypothetical protei	0.583	0.461	0.554	3.8e-56
UNIPROTKB|Q8II38	386	PF11_0336 "Pre-mRNA splicing f	0.583	0.461	0.554	3.8e-56
DICTYBASE|DDB_G0274361	515	prpf38a "putative U4/U6.U5 sma	0.518	0.306	0.547	7.6e-46

FB|FBgn0050342 Prp38 "pre-mRNA processing factor 38" [Drosophila melanogaster (taxid:7227)]

 Score = 806 (288.8 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
 Identities = 148/181 (81%), Positives = 171/181 (94%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRTVK+AK+V GTNPQYLIEKIIR+RIYDSKYWKE+CFAL+AELLVDKAMELR++GGV
Sbjct:     1 MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             +GGNIKPT FLCL LKMLQIQPEKDIVVEFIKNEEFKYVRALGA+Y+RLTG+++DCYKYL
Sbjct:    61 YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
             EPL+ D+RKLR QNR G FE+++MDEYID+LLR +R+CD+ILPRIQKR +LEENNEIE K
Sbjct:   121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query:   181 V 181
             V
Sbjct:   181 V 181

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

UNIPROTKB|Q0P5I6 PRPF38A "Pre-mRNA-splicing factor 38A" [Bos taurus (taxid:9913)]

 Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 136/181 (75%), Positives = 164/181 (90%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct:     1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct:    61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
             EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct:   121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query:   181 V 181
             V
Sbjct:   181 V 181

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|Q8NAV1 PRPF38A "Pre-mRNA-splicing factor 38A" [Homo sapiens (taxid:9606)]

 Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 136/181 (75%), Positives = 164/181 (90%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct:     1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct:    61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
             EPL+ D RK++ QNR G FE++H+DE+ID+LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct:   121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query:   181 V 181
             V
Sbjct:   181 V 181

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

ZFIN|ZDB-GENE-040801-225 prpf38a "PRP38 pre-mRNA processing factor 38 (yeast) domain containing A" [Danio rerio (taxid:7955)]

 Score = 755 (270.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 136/181 (75%), Positives = 162/181 (89%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct:     1 MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             +GGN+KPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+SVDCYKYL
Sbjct:    61 YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
             EPL+ D RK++ QNR G FE++H+DE+ID+LL  ERMCD+ILPR+QKR VLEE   ++ +
Sbjct:   121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180

Query:   181 V 181
             +
Sbjct:   181 I 181

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

MGI|MGI:1916962 Prpf38a "PRP38 pre-mRNA processing factor 38 (yeast) domain containing A" [Mus musculus (taxid:10090)]

 Score = 742 (266.3 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 133/181 (73%), Positives = 162/181 (89%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct:     1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             +GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct:    61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
             EPL+ D RK++ QNR G F ++H+DE+I +LL  ER+CD+ILPR+QKR+VLEE  ++E +
Sbjct:   121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query:   181 V 181
             V
Sbjct:   181 V 181

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

WB|WBGene00008380 prp-38 [Caenorhabditis elegans (taxid:6239)]

 Score = 677 (243.4 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 124/173 (71%), Positives = 148/173 (85%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRT K AK+V+GTNPQ+L+EKIIR RIYDS YWKE CFAL+AEL+VDK M+LRYIGG+
Sbjct:     1 MANRTEKAAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGI 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             + GNIKPTPFLCL LKMLQIQP+KDIV+EFI+ EEFKY+RALGA Y+RLT  S + YKYL
Sbjct:    61 YAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEE 173
             EPL+ D RKLR+ N+ G FE I+MD++ID LLRE+R CD+ LPR+QKR  LEE
Sbjct:   121 EPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWALEE 173

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0045132 "meiotic chromosome segregation" evidence=IMP

TAIR|locus:2064811 AT2G40650 [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 122/240 (50%), Positives = 160/240 (66%)

Query:     1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
             MANRT   AK++RGTNPQ L+EKI+R +IY   +WKE+CF L+AE LVDKAMEL ++GG 
Sbjct:     1 MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query:    61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
             FGG+ KPTPFLCLILKMLQIQPEK+IVVEFIKN+++KYVR LGA+Y+RLTG+ VD Y+YL
Sbjct:    61 FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query:   121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEV- 179
             EPL+ D RK+R +   G F + H+DE I++LL ++  CD+ +PR++KR  LE+N  +E  
Sbjct:   121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query:   180 KVXXXXXXXXXXXXXXXXXXXXXXXXVYDKNRMDVDTYHSS----KYDSH-HRDPDKERD 234
             K                           D+ R   +         + DSH HRD D +RD
Sbjct:   181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSHRHRDRDYDRD 240

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=ISS

GENEDB_PFALCIPARUM|PF11_0336 PF11_0336 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 544 (196.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 101/182 (55%), Positives = 138/182 (75%)

Query:     1 MANRTVKDAKSVR--GTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIG 58
             MANRT  DA +++  G+NPQYLI  IIR++IYDS YWKE+CFAL++E ++D+A+ L+Y+G
Sbjct:     1 MANRT--DASAIKNFGSNPQYLISNIIRSKIYDSPYWKEKCFALTSESIIDQAINLKYVG 58

Query:    59 GVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYK 118
             G +GGN KPT FLCLILK+LQIQP+KDI+ E+IKNE+F Y+RALG +Y+RL G S++ Y 
Sbjct:    59 GTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIGKSLEVYN 118

Query:   119 YLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIE 178
             +LEP+  D RK+R + + G FE I+MD ++D  L      DV  P + KR VLEENN ++
Sbjct:   119 HLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVLEENNLLQ 178

Query:   179 VK 180
              K
Sbjct:   179 RK 180

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8II38 PF11_0336 "Pre-mRNA splicing factor, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 544 (196.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 101/182 (55%), Positives = 138/182 (75%)

Query:     1 MANRTVKDAKSVR--GTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIG 58
             MANRT  DA +++  G+NPQYLI  IIR++IYDS YWKE+CFAL++E ++D+A+ L+Y+G
Sbjct:     1 MANRT--DASAIKNFGSNPQYLISNIIRSKIYDSPYWKEKCFALTSESIIDQAINLKYVG 58

Query:    59 GVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYK 118
             G +GGN KPT FLCLILK+LQIQP+KDI+ E+IKNE+F Y+RALG +Y+RL G S++ Y 
Sbjct:    59 GTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIGKSLEVYN 118

Query:   119 YLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIE 178
             +LEP+  D RK+R + + G FE I+MD ++D  L      DV  P + KR VLEENN ++
Sbjct:   119 HLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVLEENNLLQ 178

Query:   179 VK 180
              K
Sbjct:   179 RK 180

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0274361 prpf38a "putative U4/U6.U5 small nuclear ribonucleoparticle-associated protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 448 (162.8 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 87/159 (54%), Positives = 110/159 (69%)

Query:    10 KSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTP 69
             KS+ G NP+ LIEKI R +I    YWKE+C  L+ E LVD+AM L   GG FGGN +PT 
Sbjct:    48 KSIHGVNPRNLIEKITRIKIQSHPYWKEKCIGLNEESLVDRAMALESYGGCFGGNKQPTH 107

Query:    70 FLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRK 129
             FLCL+LKMLQIQPE DI+ EFI+NE+FKYVR LGA Y+RL G  VD Y  L+PL+ D R 
Sbjct:   108 FLCLLLKMLQIQPEMDIIKEFIENEDFKYVRILGAIYLRLVGKPVDIYNQLDPLYKDFRA 167

Query:   130 LRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKR 168
             LR +   G+ +V  +D++I++LL     CD+ LP I  R
Sbjct:   168 LRRKTDMGSTKVF-VDQFIEELLTTNYSCDIALPHIPSR 205

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NAV1	PR38A_HUMAN	No assigned EC number	0.7393	0.6163	0.6025	yes	N/A
Q28H87	PR38A_XENTR	No assigned EC number	0.7553	0.6163	0.6025	yes	N/A
Q0P5I6	PR38A_BOVIN	No assigned EC number	0.7393	0.6163	0.6025	yes	N/A
Q5RDD2	PR38A_PONAB	No assigned EC number	0.7393	0.6163	0.6025	yes	N/A
Q4FK66	PR38A_MOUSE	No assigned EC number	0.7234	0.6163	0.6025	yes	N/A
Q6DHU4	PR38A_DANRE	No assigned EC number	0.7393	0.6163	0.6006	yes	N/A
Q8HXH6	PR38A_MACFA	No assigned EC number	0.7393	0.6163	0.6025	N/A	N/A
Q4FZQ6	PR38A_XENLA	No assigned EC number	0.7553	0.6163	0.6025	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
pfam03371	173	pfam03371, PRP38, PRP38 family	2e-88
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-08
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	2e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-05
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	6e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-05
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	1e-04
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-04
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	4e-04
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.001
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004
pfam08648	158	pfam08648, DUF1777, Protein of unknown function (D	0.004

>gnl|CDD|217519 pfam03371, PRP38, PRP38 family

 Score =  260 bits (668), Expect = 2e-88
 Identities = 96/172 (55%), Positives = 128/172 (74%), Gaps = 1/172 (0%)

Query: 7   KDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAME-LRYIGGVFGGNI 65
             A  + GTNP  LIEKIIR RIYDS Y+KE  F L+AE +VD+ +E + +IGG +GGN 
Sbjct: 2   SGADKLNGTNPTLLIEKIIRDRIYDSPYYKENLFGLNAETIVDEIVEIVDHIGGTYGGNR 61

Query: 66  KPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFA 125
           +P+PFLCL+LK+LQIQP K+I+ E + NE+FKY+RALG +Y+RLT    D YK+LEP   
Sbjct: 62  RPSPFLCLLLKLLQIQPSKEIIKELLNNEDFKYIRALGLFYLRLTYPPADLYKWLEPYLQ 121

Query: 126 DSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEI 177
           D RKLR +   G F++ HMDE++D LL ++R+CD ILPRI KR +LEE+ E+
Sbjct: 122 DYRKLRPKLGDGDFKLTHMDEFVDDLLTKDRVCDTILPRIPKRIILEEDGEL 173

Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation. Length = 173

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 227 RDPDKERDR-RYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDY----- 280
           R+ +K R R R RS +  + R R+RSR ++R RR R +S R   R  DR RY        
Sbjct: 7   REREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSL 66

Query: 281 EREKYRSDRDRGDRRDRG-DRDRRHR 305
                R  RDR  RR R      +HR
Sbjct: 67  RYSSVRRSRDRPRRRSRSVRSIEQHR 92

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 227 RDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDR-YKDYEREKY 285
           R  D+ER  R R++    ++ RERSR + R R    +S R +DRDY R R  +   R   
Sbjct: 1   RYRDRER-GRLRNDTRRSDKGRERSRRRSRSRD---RSRRRRDRDYYRGRRGRSRSRSPN 56

Query: 286 RSDRDRGDRRDRGDRDRRHR 305
           R  R RGDR  R   DRR  
Sbjct: 57  RYYRPRGDRSYR-RDDRRSG 75

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 5/121 (4%)

Query: 185 DDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSEKSTK 244
           +   D    +  E+ +E       ++R                    +RDRR R E+   
Sbjct: 155 EARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG-- 212

Query: 245 ERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDRDRRH 304
                R     RD   R    R +DR   R      +R     D   G    RG R R  
Sbjct: 213 ---DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDR 269

Query: 305 R 305
            
Sbjct: 270 D 270

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 18/88 (20%)

Query: 227 RDPDKERDR-RYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKD------ 279
            D ++E+ R R R   S + R R R RS+ RDR  RS+         +R   +D      
Sbjct: 5   PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSR---------ERSYREDSRPRDR 55

Query: 280 --YEREKYRSDRDRGDRRDRGDRDRRHR 305
             Y+    RS R    RR R    RR R
Sbjct: 56  RRYDSRSPRSLRYSSVRRSRDRPRRRSR 83

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 17/119 (14%)

Query: 185 DDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSEKSTK 244
             + + G     E+   +  +   ++R +              D  +ER RR   ++  +
Sbjct: 182 QAEAERGERGRREERGRDGDDRDRRDRRE------------QGDRREERGRRDGGDRRGR 229

Query: 245 ERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDRDRR 303
            R R+R  ++  D R         D +    R     R +   DRDR  RR     + R
Sbjct: 230 RRRRDRRDARGDDNREDRGDRDGDDGEGRGGR-----RGRRFRDRDRRGRRGGDGGNER 283

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 244 KERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKD---YEREKYRSDRDRGDRRDRGDR 300
           +E  RER +S+ RDR   S+ PR + RD  R R +     ER      R R DRR    R
Sbjct: 3   EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPR-DRRRYDSR 61

Query: 301 DRR 303
             R
Sbjct: 62  SPR 64

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 226 HRDPDKERDRRYRSEKSTKERVRERSRSKERDR-RHRSKSPRHKDRDYDRDRYKDYEREK 284
            RD D    R  R +   +E    R     R R R R +     D + +    +D +  +
Sbjct: 197 GRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE 256

Query: 285 YRSDRDRGDRRDRGDRDRRHR 305
            R  R     RDR  R RR  
Sbjct: 257 GRGGRRGRRFRDRDRRGRRGG 277

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 244 KERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDRDRR 303
           ++   +R R K R R     S R + R  DR R     R+++R  R+R  R D   RDRR
Sbjct: 1   RDEEPDREREKSRGRDRDRSSERPRRRSRDRSR----FRDRHRRSRERSYREDSRPRDRR 56

Query: 304 HR 305
             
Sbjct: 57  RY 58

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 220 SKYDSHHRDPDKERDR-RYRSEKSTKER---VRERSRSKERDRRHRSKSPRHKDRDYDRD 275
            +     R+  +  D+ R RS + ++ R    R R R   R RR RS+S R  +R Y   
Sbjct: 4   DRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRS-RSPNRYYRPR 62

Query: 276 RYKDYEREKYRSDRDRGDRRDRGDRDRR 303
             + Y R+  RS R+  +     +RD R
Sbjct: 63  GDRSYRRDDRRSGRNTKEPLTEAERDDR 90

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 209 KNRMDVDTYHSSKYDSHHRDPDKERDR---RYRSEKSTKERVRERSRSKERDRRHRSKSP 265
            +R    +    +  S  R   + RDR   R R  +S +   RE SR ++R RR+ S+SP
Sbjct: 5   PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDR-RRYDSRSP 63

Query: 266 RHKDRD-YDRDRYKDYEREKYRSDRDRGDRRDRGDRDR 302
           R        R R +   R +        ++  R  RDR
Sbjct: 64  RSLRYSSVRRSRDRPRRRSR---SVRSIEQHRRRLRDR 98

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 227 RDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYR 286
           R    E  RR  + K+ +   +  + ++        +  R + R    DR       +  
Sbjct: 130 RRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRR-RGDREDRQAEAERG 188

Query: 287 SDRDRGDRRDRGDRDRR 303
               R +R   GD   R
Sbjct: 189 ERGRREERGRDGDDRDR 205

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 227 RDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYR 286
            +      R   +E++ +E   ER R  +R+ R        + R  +R R  D +    R
Sbjct: 149 GEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR--DGDDRDRR 206

Query: 287 SDRDRGDRR-DRGDRDRRHR 305
             R++GDRR +RG RD   R
Sbjct: 207 DRREQGDRREERGRRDGGDR 226

Length = 672

>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 224 SHHRDPDKERDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYERE 283
           S  R P + R R     +  +ER RERSRS+ERDRR RS+S         R R     R 
Sbjct: 4   SRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSP--HRSRRSRSPRRHRS 61

Query: 284 KYRSDRDRGDRRDRGDRDRR 303
           + RS   R DR+   D+D R
Sbjct: 62  RSRSPSRRRDRKRERDKDAR 81

This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG2889|consensus	204		100.0
PF03371	172	PRP38: PRP38 family; InterPro: IPR005037 Members o	100.0
KOG2888|consensus	453		100.0
PF12871	97	PRP38_assoc: Pre-mRNA-splicing factor 38-associate	93.17
KOG0835|consensus	367		89.87

>KOG2889|consensus

Probab=100.00  E-value=1.1e-69  Score=480.59  Aligned_cols=201  Identities=63%  Similarity=1.016  Sum_probs=195.7

Q ss_pred             CCCcccccccccCCCCCccchHHHHHHHccchhhHHHHhhhcchHHHHHHHhhccccccccCCCCCCCchhhhhhhhccc
Q psy1424           1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQI   80 (305)
Q Consensus         1 man~T~~~a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~Lt~etvVDeiveV~~iGg~~ggn~~PS~F~CLL~KLlqL   80 (305)
                      |||+|.+.|+++||+|||++++||+|++|++|.|||++|||||++.|||.++++.|+||.||||++|+||+||.+|||||
T Consensus         1 manry~~~a~~~retnpq~lv~KiiRsri~~sv~wke~cfgl~aellvdkam~l~~lgg~yGgn~kpt~fKOG~lkmLqi   80 (204)
T KOG2889|consen    1 MANRYKKIARMTRETNPQFLVEKIIRSRIYDSVYWKEQCFGLTAELLVDKAMELLYLGGKYGGNSKPTPFLCLDLKMLQI   80 (204)
T ss_pred             CcchhhhHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhcchHHHHHHHHHhcCCCCCccHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHHHHHHhhcCccccC
Q psy1424          81 QPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDV  160 (305)
Q Consensus        81 ~Pt~eqI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEfVd~LLtedr~~dt  160 (305)
                      +|+++|+.+||.+.+|||||||||||+||++...++|++|||+|+|||||++++.+|++.+||||||||+||+++++|+|
T Consensus        81 qpeK~i~~efi~~~~fkY~ralgafYlRLt~~~~~~y~ylepl~nDyRKir~~~~~g~~~l~ylDe~iDdLL~~~r~cdI  160 (204)
T KOG2889|consen   81 QPEKEIGSEFIMNHDFKYVRALGAFYLRLTGTDVDVYKYLEPLLNDYRKIRVVNGQGNRTLMYLDEVIDDLLNKSRICDI  160 (204)
T ss_pred             CCCcccchHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhcCCCceeeeeHHHHHHHHhhhcceecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhHhhhCCCcccccccccccccCCCCCccchhh
Q psy1424         161 ILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENE  201 (305)
Q Consensus       161 iLPRIpkR~vLE~~~~LepR~S~Le~~~~~~~~~~~~~~~~  201 (305)
                      .|||+++||+||++++|+||+|.|++|++|+++++++++.+
T Consensus       161 ~Lprl~kr~~le~~~~lep~~s~ld~d~~~~e~~~~~e~~d  201 (204)
T KOG2889|consen  161 HLPRLDKRWQLEELDLLEPRKSSLDEDDDDEESSEEEEEED  201 (204)
T ss_pred             ccchhhhhhhhhhhccccccccccccchhhhhhhhhhhhhh
Confidence            99999999999999999999999999999988766555433

>PF03371 PRP38: PRP38 family; InterPro: IPR005037 Members of this family are related to the pre mRNA splicing factor PRP38 from yeast [], therefore all the members of this family could be involved in splicing

Probab=100.00  E-value=1.2e-64  Score=446.24  Aligned_cols=169  Identities=49%  Similarity=0.952  Sum_probs=164.3

Q ss_pred             cccccCCCCCccchHHHHHHHccchhhHHHHhhhcch-HHHHHHHhh-ccccccccCCCCCCCchhhhhhhhcccCCCHH
Q psy1424           8 DAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSA-ELLVDKAME-LRYIGGVFGGNIKPTPFLCLILKMLQIQPEKD   85 (305)
Q Consensus         8 ~a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~Lt~-etvVDeive-V~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt~e   85 (305)
                      +|+++||+|||+|||+|+|+||++|.|||+.||+++. ++|||+|++ |+|+|||+||+++||+|||||||||||+|+++
T Consensus         2 ~~~~~~g~~~~~~i~~ilr~~I~~S~Y~K~~l~~l~~~~~vvd~i~~~v~~ig~~~~g~~~Ps~f~CLL~KLl~l~pt~~   81 (172)
T PF03371_consen    2 NALQIHGNNPTFNIEKILRQNIYNSEYYKENLFGLSTFETVVDEIYEIVRYIGPWYGGNRRPSPFFCLLYKLLQLRPTKE   81 (172)
T ss_pred             CCcccCCCCchhcccHHHHHHHhcCHHHHHHhhcCCcHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHHhcccCHH
Confidence            5789999999999999999999999999999999988 999999988 99999999999999999999999999999999


Q ss_pred             HHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHHHHHHhhcCccccCCCCCC
Q psy1424          86 IVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI  165 (305)
Q Consensus        86 qI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEfVd~LLtedr~~dtiLPRI  165 (305)
                      ||.+||+|.+||||||||||||||+++|.++|+||||||+|||||++++.+|. ++|||||||++||++++||||+||||
T Consensus        82 ~v~~~l~~~d~kYiralg~lYlR~~~~p~~~~~~lep~l~D~rkl~~~~~~~~-~~~~~de~vd~LL~~~~~~~~~LPrl  160 (172)
T PF03371_consen   82 QVKELLNNDDFKYIRALGFLYLRYVGPPEELYKWLEPYLNDYRKLRVRNDGGD-KITHMDEFVDDLLTKDRYCGTILPRL  160 (172)
T ss_pred             HHHHHHcCCCccHHHHHHHHHheeeCCHHHHHHHHHHHhccceeeeeecCCCc-eeEEHHHHHHHHhhhCcEecccCCCC
Confidence            99999999999999999999999999999999999999999999999887665 99999999999999999999999999


Q ss_pred             CchhhHhhhCCC
Q psy1424         166 QKRHVLEENNEI  177 (305)
Q Consensus       166 pkR~vLE~~~~L  177 (305)
                      |+|.++|+.|+|
T Consensus       161 p~r~~~e~~~~~  172 (172)
T PF03371_consen  161 PKRIVLEIDDEL  172 (172)
T ss_pred             CchHHHHhhccC
Confidence            999999999986

This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation [].

>KOG2888|consensus

Probab=100.00  E-value=1e-48  Score=373.64  Aligned_cols=171  Identities=19%  Similarity=0.397  Sum_probs=156.7

Q ss_pred             ccccCCCCCccchHHHHHHHccchhhHHHHhhhc-chHHHHHHHh-hccccccccCCC-------------CCC------
Q psy1424           9 AKSVRGTNPQYLIEKIIRARIYDSKYWKEECFAL-SAELLVDKAM-ELRYIGGVFGGN-------------IKP------   67 (305)
Q Consensus         9 a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~L-t~etvVDeiv-eV~~iGg~~ggn-------------~~P------   67 (305)
                      .+++||+..++|||++|..||++|.|||.+||.| |+++|||+|+ +|+|++||.+|+             +.+      
T Consensus        46 tlp~wGne~tmnLn~lil~NIlsS~YfKv~LyelktyhevideIyyqVkHvEPWekGsrkt~gqtgmCggvRGvgaggiv  125 (453)
T KOG2888|consen   46 TLPVWGNEVTMNLNTLILENILSSYYFKVNLYELKTYHEVIDEIYYQVKHVEPWEKGSRKTQGQTGMCGGVRGVGAGGIV  125 (453)
T ss_pred             ccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccCchhcCCccccccccccccccccCcCcch
Confidence            4589999999999999999999999999999977 8999999995 599999997554             234      


Q ss_pred             CchhhhhhhhcccCCCHHHHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHH
Q psy1424          68 TPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEY  147 (305)
Q Consensus        68 S~F~CLL~KLlqL~Pt~eqI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEf  147 (305)
                      |+++|||||||+|++|.+||.+||+|.|++|||||||||||||.+|.+||.||||||+|.+.|.+++..|  .+||||++
T Consensus       126 STAyCLLYklftlklTrKQ~~gllnhtdSpYIRalGFmYiRYtqpp~dLw~WyEpyldDdeeidpkaggG--~vmTiGqm  203 (453)
T KOG2888|consen  126 STAYCLLYKLFTLKLTRKQLIGLLNHTDSPYIRALGFMYIRYTQPPADLWDWYEPYLDDDEEIDPKAGGG--DVMTIGQM  203 (453)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHhhcCCchhhhhheeeEEeecCChhHHHHHhhhhccchhhcCCcCCCC--ceeeHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999976444  89999999


Q ss_pred             HHHHhhcCccccCCCCCCCchhhHhhhCCCcccc
Q psy1424         148 IDQLLREERMCDVILPRIQKRHVLEENNEIEVKV  181 (305)
Q Consensus       148 Vd~LLtedr~~dtiLPRIpkR~vLE~~~~LepR~  181 (305)
                      |..||++..||+|.|||||++.+-.....|+.+.
T Consensus       204 vr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~  237 (453)
T KOG2888|consen  204 VRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERK  237 (453)
T ss_pred             HHHHHhhhhHHhccCCCCCchHHHHHHHHHHhcc
Confidence            9999999999999999999998776666665444

>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins

Probab=93.17  E-value=0.068  Score=43.57  Aligned_cols=18  Identities=39%  Similarity=0.619  Sum_probs=14.6

Q ss_pred             ccccccccccccCCCCCc
Q psy1424         179 VKVSILDDDIDDGGSSSS  196 (305)
Q Consensus       179 pR~S~Le~~~~~~~~~~~  196 (305)
                      |++++|+++|+++++++|
T Consensus         1 p~~s~l~~d~~~~~~~~E   18 (97)
T PF12871_consen    1 PRVSALEEDLDDEESGEE   18 (97)
T ss_pred             Cccccccccccccccccc
Confidence            789999999988876544

The function of the domain is not known.

>KOG0835|consensus

Probab=89.87  E-value=2.6  Score=42.02  Aligned_cols=42  Identities=19%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CCCchhhhhhhhcccCCCHHHHHH---HhhC--------CCchhHHHHHHhHH
Q psy1424          66 KPTPFLCLILKMLQIQPEKDIVVE---FIKN--------EEFKYVRALGAYYM  107 (305)
Q Consensus        66 ~PS~F~CLL~KLlqL~Pt~eqI~~---~L~~--------~d~KYIRALG~LYL  107 (305)
                      -|.-+|--.+.-||+-|..++++.   |.+.        -..+-+.|+|+.||
T Consensus       140 hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyL  192 (367)
T KOG0835|consen  140 HPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYL  192 (367)
T ss_pred             ccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHH
Confidence            477888878888899999866654   3331        26788999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 48/278 (17%), Positives = 79/278 (28%), Gaps = 61/278 (21%)

Query: 10  KSVRGTNPQYLIEKIIRARIYD----SKYWK-------EECFALSAELLVDKAMELRYIG 58
           + V  TNP+ L   II   I D       WK             S  +L        +  
Sbjct: 320 REVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 59  -GVFGGNIK-PTPFLCLI-LKMLQIQPEKDIVVEFIK-------NEEFKYVRALGAYYMR 108
             VF  +   PT  L LI   +++      +V +  K        +E     ++ + Y+ 
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTI--SIPSIYLE 434

Query: 109 LTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYI--------DQLLREERMCDV 160
           L     +    L     D   +            ++D+Y           +   ERM   
Sbjct: 435 LKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 161 ILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSS 220
                  R V  +   +E K  I  D      S S  +               +      
Sbjct: 494 -------RMVFLDFRFLEQK--IRHDSTAWNASGSILN-----------TLQQLK----- 528

Query: 221 KYDSHHRDPDKERDRRYRSEKSTKERVRERS-RSKERD 257
            Y  +  D D + +R   +      ++ E    SK  D
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00