Psyllid ID: psy14289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MFSVDTDTDYLLIKELSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL
Secondary Structure (PSIPRED)
cccccccccEEEHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEccccEEEEEcccccccHHHHHHHcccccccEEEEEEEccccccccccccccccccEEEEEEEEEccccccccEEEEEEEEcccccEEEEEccccEEEEEcccccccccccccEEEccccEEEEEEEcccccccEEEEEEEccEEEEEccccccEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEHHHHHHcccccccccccccEEEEEcccccccHHHHHHccccccccccEEEEEEccccHHHccccccccccEEEEEEEEEEccccccEEEEEEEEEEcccccEEEEccccEEEEEcccccccccccccEEEccccEEEEEEccccccEEEEEEEEEcccEEEEccccccEEEEEEcccccccccccccccEEEc
Coil and Loop (DISEMBL)
mfsvdtdtDYLLIKELSDVILTikpwvgrnqthksaprkhihylpsKLTRYFAMIvcdpsqnkvhyegwvphslhyrnddQRLTREAMERYLRDRSDMVIVILHAKVAQKsygnekrffcpppciylygegWRLRQEQLLREGESEQAAQLCAFIgignsdqdmqQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFygsghdigvfTSKRIkviskpskkkqslknadlcIASGTKVALFNRLRSQTVSTRYLHvengnfhasstqwGAFTIHlldddeseseefsVRDWFTSL
Flexible Loop (DISEMBL)
mfsvdtdtDYLLIKELSDVILTIKpwvgrnqthksaprkhihyLPSKLTRYFAMIVCDPSQNKVHYEGWVPhslhyrnddqrLTREAMERYLRDRSDMVIVILHAKVAqksygnekrffcPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKViskpskkkqslknadLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDddeseseefsvrdwftsl
Low Complexity Region (SEG)
MFSVDTDTDYLLIKELSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLdddeseseefsVRDWFTSL
Disordered region (IsUnstruct)
******DTDYLLIKELSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREG**EQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVI***********NADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLD******************
Disordered Region (DISOPRED)
****DTDTDYLLIKELSDVI********************************************************************ERYLRDRSDMVIVILHAKV**********FFCPPPCIYLYGEG***********************IGI***********LNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTS**********************IASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHL**************DWFTSL
Disordered Region (DISEMBL)
MFSVDTDTDYLLIKELSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVI***********NADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDD****************
Disordered Region (DISPRO)
***VDTDTDYLLIKELSDVILTIKPWVGRN***KS***KHI***P**********************************DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE***EQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKK***KNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSV***F***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSVDTDTDYLLIKELSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
P28159	594	Suppressor of hairless pr	yes	N/A	0.723	0.361	0.861	1e-110
Q5RFK6	486	Recombining binding prote	yes	N/A	0.760	0.465	0.766	1e-101
Q06330	500	Recombining binding prote	yes	N/A	0.750	0.446	0.781	1e-101
P31266	526	Recombining binding prote	yes	N/A	0.730	0.412	0.798	1e-101
Q3SZ41	487	Recombining binding prote	yes	N/A	0.730	0.445	0.798	1e-101
Q91880	501	Suppressor of hairless pr	N/A	N/A	0.730	0.433	0.788	1e-100
O02019	518	Suppressor of hairless ho	N/A	N/A	0.791	0.453	0.707	3e-96
O76808	554	Suppressor of hairless ho	yes	N/A	0.744	0.398	0.735	1e-90
O08674	515	Recombining binding prote	no	N/A	0.680	0.392	0.537	4e-60
Q9UBG7	517	Recombining binding prote	no	N/A	0.710	0.408	0.513	2e-59

>sp|P28159|SUH_DROME Suppressor of hairless protein OS=Drosophila melanogaster GN=Su(H) PE=1 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/216 (86%), Positives = 206/216 (95%), Gaps = 1/216 (0%)

Query: 79  DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 138
           ++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G GWR R E+
Sbjct: 101 EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGSGWRRRYEE 160

Query: 139 LLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKM 198
           +L++GE EQ AQLCAFIGIG+SDQDMQQLDLN GKQYCAAKTL+ISDSDKRKHFMLSVKM
Sbjct: 161 MLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN-GKQYCAAKTLFISDSDKRKHFMLSVKM 219

Query: 199 FYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHV 258
           FYG+GHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGT VALFNRLRSQTVSTRYLHV
Sbjct: 220 FYGNGHDIGVFNSKRIKVISKPSKKKQSLKNADLCIASGTNVALFNRLRSQTVSTRYLHV 279

Query: 259 ENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           ENG+FHASSTQWGAFTIHLLDD+ESESEEF VRD +
Sbjct: 280 ENGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGY 315

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Binds directly the 5'-GTGRGAR-3' DNA consensus sequence, which is present in the regulatory region of several genes. Required for neurogenesis in imaginal disks. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Required for transcription of Sim. Also functions independently of Notch pathway, in the development of the bristle sensory organ precursor cell.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RFK6|SUH_PONAB Recombining binding protein suppressor of hairless OS=Pongo abelii GN=RBPJ PE=2 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/227 (76%), Positives = 193/227 (85%), Gaps = 1/227 (0%)

Query: 68  GWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL 127
            W+      R   +RLT+EAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL
Sbjct: 2   AWIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYL 61

Query: 128 YGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSD 187
            G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSD
Sbjct: 62  MGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSD 120

Query: 188 KRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 247
           KRKHFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180

Query: 248 SQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           SQTVSTRYLHVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 227

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Pongo abelii (taxid: 9601)

>sp|Q06330|SUH_HUMAN Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/224 (78%), Positives = 192/224 (85%), Gaps = 1/224 (0%)

Query: 71  PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 130
           P     R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G 
Sbjct: 19  PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78

Query: 131 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRK 190
           GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRK
Sbjct: 79  GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRK 137

Query: 191 HFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 250
           HFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT
Sbjct: 138 HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 197

Query: 251 VSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           VSTRYLHVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 198 VSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 241

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Homo sapiens (taxid: 9606)

>sp|P31266|SUH_MOUSE Recombining binding protein suppressor of hairless OS=Mus musculus GN=Rbpj PE=1 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 191/218 (87%), Gaps = 1/218 (0%)

Query: 77  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 51  RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 110

Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 111 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 169

Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 170 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 229

Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           HVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 230 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 267

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Mus musculus (taxid: 10090)

>sp|Q3SZ41|SUH_BOVIN Recombining binding protein suppressor of hairless OS=Bos taurus GN=RBPJ PE=2 SV=1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 191/218 (87%), Gaps = 1/218 (0%)

Query: 77  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 12  RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 71

Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 72  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 130

Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 131 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 190

Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           HVE GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 191 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 228

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes. Probably represses or activates transcription via the recruitment of chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins, respectively. Specifically binds to the immunoglobulin kappa-type J segment recombination signal sequence. Binds specifically to methylated DNA.

Bos taurus (taxid: 9913)

>sp|Q91880|SUH_XENLA Suppressor of hairless protein homolog OS=Xenopus laevis GN=rbpj PE=1 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 191/218 (87%), Gaps = 1/218 (0%)

Query: 77  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 26  RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 85

Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
           EQ+ R+G SEQ +Q CAFIGIGNS+Q+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 86  EQMERDGCSEQESQPCAFIGIGNSEQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 144

Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 145 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 204

Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           HVE GNFHASS QWGAF IHLLDD+ESE EEF+VRD +
Sbjct: 205 HVEGGNFHASSQQWGAFYIHLLDDEESEGEEFTVRDGY 242

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some NICD product of Notch proteins (Notch intracellular domain), it acts as a transcriptional activator that activates transcription of Notch target genes (By similarity). Required for the transcriptional activation of ESR1, suggesting that it is required during primary neurogenesis in embryos.

Xenopus laevis (taxid: 8355)

>sp|O02019|SUH_HALRO Suppressor of hairless homolog OS=Halocynthia roretzi GN=RBP-JK PE=2 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 195/236 (82%), Gaps = 1/236 (0%)

Query: 59  PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 118
           P+QN        P S+      QRLTREAM +YLR+R+D  ++ILHAKVAQKSYGNEKRF
Sbjct: 38  PNQNGGTSTSSKPRSVFENRPPQRLTREAMSKYLRERNDQTLIILHAKVAQKSYGNEKRF 97

Query: 119 FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAA 178
            CPPPC+YL   GW+ +Q+ L    ++ +A Q+ AFIGIG+SDQ+MQQL+L+ GK +C A
Sbjct: 98  LCPPPCLYLMESGWKQKQQILEEADQAPEAGQVHAFIGIGSSDQEMQQLNLD-GKNFCTA 156

Query: 179 KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGT 238
           KTLYISD+DKRKHFML VKMF+GSG ++G F S+RIKVISKPSKKKQSLKNADLCIASGT
Sbjct: 157 KTLYISDTDKRKHFMLCVKMFFGSGLEVGAFNSRRIKVISKPSKKKQSLKNADLCIASGT 216

Query: 239 KVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           KVALFNRLRSQTVSTRYLHVENGNFHASS QWG+F IHLLDDDESESEEF+VRD +
Sbjct: 217 KVALFNRLRSQTVSTRYLHVENGNFHASSIQWGSFAIHLLDDDESESEEFTVRDGY 272

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes.

Halocynthia roretzi (taxid: 7729)

>sp|O76808|SUH_CIOIN Suppressor of hairless homolog OS=Ciona intestinalis GN=Su(H) PE=2 SV=1

 Score =  333 bits (853), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 189/223 (84%), Gaps = 2/223 (0%)

Query: 73  SLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGW 132
           SL  +   ++LTR+AM RYL+D +D  +++LHAKVAQKSYGNEKRFFCPPPC+YL G GW
Sbjct: 46  SLREKYPPKKLTRDAMRRYLKDPNDQTLIVLHAKVAQKSYGNEKRFFCPPPCMYLLGNGW 105

Query: 133 RLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHF 192
           + +Q+ L  E  S +A QL AFIGIG+S+Q+MQQL L+ GK +C AKTLYISD+DKRKHF
Sbjct: 106 KRKQQILEEEEGSSEAGQLHAFIGIGSSEQEMQQLHLD-GKNFCTAKTLYISDTDKRKHF 164

Query: 193 MLSVKMFYGSG-HDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 251
           ML+VKMF+G G  D+G F+SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV
Sbjct: 165 MLNVKMFFGGGGADVGQFSSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 224

Query: 252 STRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           STRYLHVE GNFHASS QWG F IHLLDDDESESEEFSV D +
Sbjct: 225 STRYLHVEKGNFHASSIQWGCFAIHLLDDDESESEEFSVVDGY 267

Transcriptional regulator that plays a central role in Notch signaling, a signaling pathway involved in cell-cell communication that regulates a broad spectrum of cell-fate determinations. Acts as a transcriptional repressor when it is not associated with Notch proteins. When associated with some Notch protein, it acts as a transcriptional activator that activates transcription of Notch target genes (By similarity). Required for the transcriptional expression of Brachyury, suggesting that it participates in notochord differentiation.

Ciona intestinalis (taxid: 7719)

>sp|O08674|RBPJL_MOUSE Recombining binding protein suppressor of hairless-like protein OS=Mus musculus GN=Rbpjl PE=1 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 152/212 (71%), Gaps = 10/212 (4%)

Query: 83  LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR--QEQLL 140
           + RE +   L+ R +  + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++  Q+Q L
Sbjct: 50  ILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQAL 109

Query: 141 REGESEQAAQLCAFIGI---GNSDQDMQQLDLN---NGKQYCAAKTLYISDSDKRKHFML 194
           +  E+     +C ++G+     S  + Q+L+     + +++  AKTLYISD+DKRKHF L
Sbjct: 110 QSAET--GPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRL 167

Query: 195 SVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTR 254
            +++    G ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTR
Sbjct: 168 VLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTR 227

Query: 255 YLHVENGNFHASSTQWGAFTIHLLDDDESESE 286
           YL VE+G F AS+ QW AFT+HL D   S+ +
Sbjct: 228 YLSVEDGAFVASARQWAAFTLHLADGHCSQGD 259

Putative transcription factor, which cooperates with EBNA2 to activate transcription.

Mus musculus (taxid: 10090)

>sp|Q9UBG7|RBPJL_HUMAN Recombining binding protein suppressor of hairless-like protein OS=Homo sapiens GN=RBPJL PE=1 SV=3

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 151/218 (69%), Gaps = 7/218 (3%)

Query: 83  LTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE 142
           + R  + R L+ + +  + ILHAKVAQKSYGNEKRFFCPPPC+YL G GWR++  Q    
Sbjct: 52  ILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAH 111

Query: 143 GESEQAAQLCAFIGI---GNSDQDMQQLDLN---NGKQYCAAKTLYISDSDKRKHFMLSV 196
              E    +C ++G+     S  + Q+L+     + +++  AKTLYISD+DKRKHF L +
Sbjct: 112 QAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVL 171

Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           ++    G ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTRYL
Sbjct: 172 RLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYL 231

Query: 257 HVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
            VE+G F AS+ QW AFT+HL D   ++  +F  R+ +
Sbjct: 232 SVEDGAFVASARQWAAFTLHLADGHSAQG-DFPPREGY 268

Putative transcription factor, which cooperates with EBNA2 to activate transcription.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
322795206	511	hypothetical protein SINV_09098 [Solenop	0.740	0.430	0.936	1e-120
328791062	506	PREDICTED: suppressor of hairless protei	0.740	0.434	0.936	1e-119
383864013	506	PREDICTED: suppressor of hairless protei	0.740	0.434	0.936	1e-119
332029718	509	Suppressor of hairless protein [Acromyrm	0.740	0.432	0.936	1e-119
340714241	506	PREDICTED: suppressor of hairless protei	0.740	0.434	0.936	1e-119
242019295	501	suppressor of hairless protein, putative	0.794	0.471	0.877	1e-119
91083357	507	PREDICTED: similar to recombining bindin	0.737	0.431	0.940	1e-119
307176269	509	Suppressor of hairless protein [Camponot	0.740	0.432	0.932	1e-119
307206658	506	Suppressor of hairless protein [Harpegna	0.740	0.434	0.923	1e-118
157113375	543	recombining binding protein suppressor o	0.872	0.476	0.746	1e-112

>gi|322795206|gb|EFZ18028.1| hypothetical protein SINV_09098 [Solenopsis invicta]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/222 (93%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 36  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 95

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 96  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 155

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 156 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 215

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 216 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 257

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791062|ref|XP_003251510.1| PREDICTED: suppressor of hairless protein [Apis mellifera] gi|380026085|ref|XP_003696792.1| PREDICTED: suppressor of hairless protein-like [Apis florea]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/222 (93%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864013|ref|XP_003707474.1| PREDICTED: suppressor of hairless protein-like [Megachile rotundata]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/222 (93%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029718|gb|EGI69597.1| Suppressor of hairless protein [Acromyrmex echinatior]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/222 (93%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRADHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714241|ref|XP_003395639.1| PREDICTED: suppressor of hairless protein-like [Bombus terrestris] gi|350417256|ref|XP_003491333.1| PREDICTED: suppressor of hairless protein-like [Bombus impatiens]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/222 (93%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGESEQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019295|ref|XP_002430097.1| suppressor of hairless protein, putative [Pediculus humanus corporis] gi|212515178|gb|EEB17359.1| suppressor of hairless protein, putative [Pediculus humanus corporis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 222/237 (93%), Gaps = 1/237 (0%)

Query: 59  PSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRF 118
           P     HYE + P  L ++ +D+RLTREAME+YLR+RSDMVIVILHAKVAQKSYGNEKRF
Sbjct: 25  PPSPPNHYERYAPVPLRHQ-EDRRLTREAMEKYLRERSDMVIVILHAKVAQKSYGNEKRF 83

Query: 119 FCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAA 178
           FCPPPCIYLYG+GWRLR EQLLREGES+Q+AQLCAFIGIGNSDQDMQQLDLNNGKQYCAA
Sbjct: 84  FCPPPCIYLYGDGWRLRHEQLLREGESDQSAQLCAFIGIGNSDQDMQQLDLNNGKQYCAA 143

Query: 179 KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGT 238
           KTLYISDSDKRKHFMLSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGT
Sbjct: 144 KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFQSKRIKVISKPSKKKQSLKNADLCIASGT 203

Query: 239 KVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           KVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF+VR+ + 
Sbjct: 204 KVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFAVREGYV 260

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083357|ref|XP_975102.1| PREDICTED: similar to recombining binding protein suppressor of hairless [Tribolium castaneum] gi|270008236|gb|EFA04684.1| suppressor of hairless [Tribolium castaneum]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/219 (94%), Positives = 215/219 (98%)

Query: 76  YRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLR 135
           YR +D+RLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWRLR
Sbjct: 39  YRGEDRRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWRLR 98

Query: 136 QEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLS 195
           QEQ+LREGESEQA+QLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLS
Sbjct: 99  QEQMLREGESEQASQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLS 158

Query: 196 VKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRY 255
           VKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRY
Sbjct: 159 VKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRY 218

Query: 256 LHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
           LHVENG+FHASSTQWGAFTIHLLDD+ESESEEF VRD +
Sbjct: 219 LHVENGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGY 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176269|gb|EFN65900.1| Suppressor of hairless protein [Camponotus floridanus]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/222 (93%), Positives = 214/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDM+IVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDQQDQRLTREAMERYLRDRSDMMIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGESEQ AQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGESEQNAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFFSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206658|gb|EFN84630.1| Suppressor of hairless protein [Harpegnathos saltator]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/222 (92%), Positives = 215/222 (96%), Gaps = 2/222 (0%)

Query: 76  YRND--DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWR 133
           YR D  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G+GWR
Sbjct: 35  YRPDHQDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWR 94

Query: 134 LRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 193
           +RQEQ+LREGE++Q++QLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM
Sbjct: 95  MRQEQMLREGETDQSSQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFM 154

Query: 194 LSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 253
           LSVKMFYGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 155 LSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 214

Query: 254 RYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           RYLHVENGNFHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 215 RYLHVENGNFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 256

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113375|ref|XP_001657802.1| recombining binding protein suppressor of hairless [Aedes aegypti] gi|108877792|gb|EAT42017.1| AAEL006419-PA [Aedes aegypti]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/276 (74%), Positives = 227/276 (82%), Gaps = 17/276 (6%)

Query: 28  GRNQTHKSAPRKHIHYLPSKLTRYFAMIVC--------DPSQNKVHYEGWVPHSLHYRND 79
           G  QT  S P  H   L  +L     + V          PS N + + G +        +
Sbjct: 9   GYGQTPPSPPTHHGGALIPRLGGGAVIPVSANTNAGSMGPSGNAL-FRGPI--------E 59

Query: 80  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQL 139
           ++RLTREAME+YLRDR++MVIVILHAKVAQKSYGNEKRFFCPPPCIYL+GEGWRLR+EQ+
Sbjct: 60  ERRLTREAMEKYLRDRNNMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGEGWRLRKEQM 119

Query: 140 LREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMF 199
           LR GESEQ+ QLCAFIGIG+SDQDMQ LDLNN KQYCAAKTL+ISDSDKRKHFMLSVKMF
Sbjct: 120 LRRGESEQSTQLCAFIGIGSSDQDMQPLDLNNSKQYCAAKTLFISDSDKRKHFMLSVKMF 179

Query: 200 YGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 259
           YGSGHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE
Sbjct: 180 YGSGHDIGVFQSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 239

Query: 260 NGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFT 295
           +G+FHASSTQWGAFTIHLLDD+ESESEEF VRD + 
Sbjct: 240 DGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGYV 275

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
FB|FBgn0004837	594	Su(H) "Suppressor of Hairless"	0.744	0.372	0.799	1.4e-94
UNIPROTKB|E2QV83	486	RBPJ "Uncharacterized protein"	0.757	0.462	0.734	1.6e-86
UNIPROTKB|D6R927	382	RBPJ "Recombining-binding prot	0.757	0.589	0.734	1.6e-86
UNIPROTKB|I3LDF9	486	RBPJ "Recombining binding prot	0.757	0.462	0.734	1.6e-86
UNIPROTKB|Q5RFK6	486	RBPJ "Recombining binding prot	0.757	0.462	0.730	3.3e-86
UNIPROTKB|Q06330	500	RBPJ "Recombining binding prot	0.750	0.446	0.741	1.1e-85
UNIPROTKB|Q3SZ41	487	RBPJ "Recombining binding prot	0.730	0.445	0.756	1.4e-85
MGI|MGI:96522	526	Rbpj "recombination signal bin	0.730	0.412	0.756	1.4e-85
UNIPROTKB|F1NIJ8	484	RBPJ "Uncharacterized protein"	0.730	0.448	0.752	2.4e-85
UNIPROTKB|Q91880	501	rbpj "Suppressor of hairless p	0.730	0.433	0.752	3e-85

FB|FBgn0004837 Su(H) "Suppressor of Hairless" [Drosophila melanogaster (taxid:7227)]

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 179/224 (79%), Positives = 199/224 (88%)

Query:    71 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 130
             P+  H   ++++LTR+AME+Y+R+R+DMVIVILHAKVAQKSYGNEKRFFCPPPCIYL+G 
Sbjct:    95 PYRPHI--EEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGS 152

Query:   131 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRK 190
             GWR R E++L++GE EQ AQLCAFIGIG+SDQDMQQLDLN GKQYCAAKTL+ISDSDKRK
Sbjct:   153 GWRRRYEEMLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLN-GKQYCAAKTLFISDSDKRK 211

Query:   191 HFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 250
             HFMLSVKMFYG+GHDIGVF SKRIKVISKPSKKKQSLKNADLCIASGT VALFNRLRSQT
Sbjct:   212 HFMLSVKMFYGNGHDIGVFNSKRIKVISKPSKKKQSLKNADLCIASGTNVALFNRLRSQT 271

Query:   251 VSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             VSTRYLHVENG+FHASSTQWGAFTIHLL           VRD +
Sbjct:   272 VSTRYLHVENGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGY 315

GO:0007219 "Notch signaling pathway" evidence=IGI;NAS;IMP;TAS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=ISS;IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0003677 "DNA binding" evidence=NAS;IDA;TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0007451 "dorsal/ventral lineage restriction, imaginal disc" evidence=NAS

GO:0046331 "lateral inhibition" evidence=TAS

GO:0042688 "crystal cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0042683 "negative regulation of compound eye cone cell fate specification" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0007616 "long-term memory" evidence=IMP

UNIPROTKB|E2QV83 RBPJ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 166/226 (73%), Positives = 183/226 (80%)

Query:    69 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 128
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:   129 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDK 188
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDK
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDK 121

Query:   189 RKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 248
             RKHFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS
Sbjct:   122 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 181

Query:   249 QTVSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             QTVSTRYLHVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   182 QTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 227

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|D6R927 RBPJ "Recombining-binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 166/226 (73%), Positives = 183/226 (80%)

Query:    69 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 128
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:   129 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDK 188
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDK
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDK 121

Query:   189 RKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 248
             RKHFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS
Sbjct:   122 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 181

Query:   249 QTVSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             QTVSTRYLHVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   182 QTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 227

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0000982 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LDF9 RBPJ "Recombining binding protein suppressor of hairless" [Sus scrofa (taxid:9823)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 166/226 (73%), Positives = 183/226 (80%)

Query:    69 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 128
             W+      R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:   129 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDK 188
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDK
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDK 121

Query:   189 RKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 248
             RKHFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS
Sbjct:   122 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 181

Query:   249 QTVSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             QTVSTRYLHVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   182 QTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 227

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q5RFK6 RBPJ "Recombining binding protein suppressor of hairless" [Pongo abelii (taxid:9601)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 165/226 (73%), Positives = 183/226 (80%)

Query:    69 WVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLY 128
             W+      R   +RLT+EAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL 
Sbjct:     3 WIKRKFGERPPPKRLTKEAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLM 62

Query:   129 GEGWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDK 188
             G GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDK
Sbjct:    63 GSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDK 121

Query:   189 RKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 248
             RKHFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS
Sbjct:   122 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 181

Query:   249 QTVSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             QTVSTRYLHVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   182 QTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 227

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=ISS

UNIPROTKB|Q06330 RBPJ "Recombining binding protein suppressor of hairless" [Homo sapiens (taxid:9606)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 166/224 (74%), Positives = 182/224 (81%)

Query:    71 PHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGE 130
             P     R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G 
Sbjct:    19 PGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGS 78

Query:   131 GWRLRQEQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRK 190
             GW+ ++EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRK
Sbjct:    79 GWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRK 137

Query:   191 HFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 250
             HFMLSVKMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT
Sbjct:   138 HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 197

Query:   251 VSTRYLHVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             VSTRYLHVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   198 VSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 241

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=NAS

GO:0000150 "recombinase activity" evidence=NAS

GO:0003677 "DNA binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IDA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=IMP;TAS

GO:0010467 "gene expression" evidence=TAS

GO:0036302 "atrioventricular canal development" evidence=ISS

GO:0003214 "cardiac left ventricle morphogenesis" evidence=ISS

GO:0030279 "negative regulation of ossification" evidence=ISS

GO:0061314 "Notch signaling involved in heart development" evidence=IC

GO:0001525 "angiogenesis" evidence=ISS

GO:0001837 "epithelial to mesenchymal transition" evidence=ISS

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0035912 "dorsal aorta morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0060716 "labyrinthine layer blood vessel development" evidence=ISS

GO:0072554 "blood vessel lumenization" evidence=ISS

GO:0097101 "blood vessel endothelial cell fate specification" evidence=ISS

GO:1901186 "positive regulation of ERBB signaling pathway" evidence=ISS

GO:1901189 "positive regulation of ephrin receptor signaling pathway" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=ISS

GO:0003160 "endocardium morphogenesis" evidence=ISS

GO:0003198 "epithelial to mesenchymal transition involved in endocardial cushion formation" evidence=ISS

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=ISS

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP

UNIPROTKB|Q3SZ41 RBPJ "Recombining binding protein suppressor of hairless" [Bos taurus (taxid:9913)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 165/218 (75%), Positives = 181/218 (83%)

Query:    77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
             R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct:    12 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 71

Query:   137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
             EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct:    72 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 130

Query:   197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
             KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct:   131 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 190

Query:   257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             HVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   191 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 228

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

MGI|MGI:96522 Rbpj "recombination signal binding protein for immunoglobulin kappa J region" [Mus musculus (taxid:10090)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 165/218 (75%), Positives = 181/218 (83%)

Query:    77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
             R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct:    51 RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 110

Query:   137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
             EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct:   111 EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 169

Query:   197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
             KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct:   170 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 229

Query:   257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             HVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   230 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 267

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IDA

GO:0000982 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=ISO

GO:0001228 "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0001525 "angiogenesis" evidence=IMP

GO:0001756 "somitogenesis" evidence=TAS

GO:0001837 "epithelial to mesenchymal transition" evidence=IMP

GO:0001947 "heart looping" evidence=TAS

GO:0001974 "blood vessel remodeling" evidence=IMP

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=ISO

GO:0002437 "inflammatory response to antigenic stimulus" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003157 "endocardium development" evidence=IMP

GO:0003160 "endocardium morphogenesis" evidence=IMP

GO:0003198 "epithelial to mesenchymal transition involved in endocardial cushion formation" evidence=IMP

GO:0003214 "cardiac left ventricle morphogenesis" evidence=IMP

GO:0003222 "ventricular trabecula myocardium morphogenesis" evidence=IMP

GO:0003256 "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" evidence=IMP

GO:0003677 "DNA binding" evidence=ISA;IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC;ISA;IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;IGI

GO:0006959 "humoral immune response" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=ISO;IMP

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=ISO;IGI

GO:0007507 "heart development" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009912 "auditory receptor cell fate commitment" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0021983 "pituitary gland development" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030183 "B cell differentiation" evidence=IMP

GO:0030216 "keratinocyte differentiation" evidence=IMP

GO:0030279 "negative regulation of ossification" evidence=IMP

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IMP

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0035481 "positive regulation of Notch signaling pathway involved in heart induction" evidence=TAS

GO:0035912 "dorsal aorta morphogenesis" evidence=IMP

GO:0036302 "atrioventricular canal development" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045165 "cell fate commitment" evidence=IMP

GO:0045596 "negative regulation of cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP;IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0048733 "sebaceous gland development" evidence=IMP

GO:0048820 "hair follicle maturation" evidence=IMP

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IMP

GO:0060716 "labyrinthine layer blood vessel development" evidence=IMP

GO:0060844 "arterial endothelial cell fate commitment" evidence=IMP

GO:0060853 "Notch signaling pathway involved in arterial endothelial cell fate commitment" evidence=IC

GO:0061344 "regulation of cell adhesion involved in heart morphogenesis" evidence=IC

GO:0061371 "determination of heart left/right asymmetry" evidence=TAS

GO:0072554 "blood vessel lumenization" evidence=IMP

GO:0072602 "interleukin-4 secretion" evidence=IMP

GO:0097101 "blood vessel endothelial cell fate specification" evidence=IGI

GO:1901186 "positive regulation of ERBB signaling pathway" evidence=IMP

GO:1901189 "positive regulation of ephrin receptor signaling pathway" evidence=IMP

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=IMP

UNIPROTKB|F1NIJ8 RBPJ "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 164/218 (75%), Positives = 181/218 (83%)

Query:    77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
             R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct:     9 RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 68

Query:   137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
             EQ+ R+G +EQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct:    69 EQMERDGCTEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 127

Query:   197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
             KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct:   128 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 187

Query:   257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             HVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   188 HVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 225

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0002193 "MAML1-RBP-Jkappa- ICN1 complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q91880 rbpj "Suppressor of hairless protein homolog" [Xenopus laevis (taxid:8355)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 164/218 (75%), Positives = 181/218 (83%)

Query:    77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
             R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct:    26 RPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 85

Query:   137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
             EQ+ R+G SEQ +Q CAFIGIGNS+Q+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct:    86 EQMERDGCSEQESQPCAFIGIGNSEQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 144

Query:   197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
             KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct:   145 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 204

Query:   257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
             HVE GNFHASS QWGAF IHLL           VRD +
Sbjct:   205 HVEGGNFHASSQQWGAFYIHLLDDEESEGEEFTVRDGY 242

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007221 "positive regulation of transcription of Notch receptor target" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZ41	SUH_BOVIN	No assigned EC number	0.7981	0.7306	0.4455	yes	N/A
P28159	SUH_DROME	No assigned EC number	0.8611	0.7239	0.3619	yes	N/A
P31266	SUH_MOUSE	No assigned EC number	0.7981	0.7306	0.4125	yes	N/A
Q5RFK6	SUH_PONAB	No assigned EC number	0.7665	0.7609	0.4650	yes	N/A
Q06330	SUH_HUMAN	No assigned EC number	0.7812	0.7508	0.446	yes	N/A
O76808	SUH_CIOIN	No assigned EC number	0.7354	0.7441	0.3989	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	297
pfam09271	138	pfam09271, LAG1-DNAbind, LAG1, DNA binding	9e-70
pfam09270	152	pfam09270, BTD, Beta-trefoil DNA-binding domain	2e-28

>gnl|CDD|220160 pfam09271, LAG1-DNAbind, LAG1, DNA binding

 Score =  212 bits (541), Expect = 9e-70
 Identities = 90/138 (65%), Positives = 106/138 (76%), Gaps = 5/138 (3%)

Query: 99  VIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIG 158
            + ILHAKVAQKSYGNEKRF CPPPC+YL G GWRL+ + L   G S+QA ++  +IGIG
Sbjct: 1   TVSILHAKVAQKSYGNEKRFLCPPPCVYLIGPGWRLKPQPLQPNGISDQATEISPYIGIG 60

Query: 159 NSDQ---DMQQLDLNNGKQYCAA--KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKR 213
            S+Q   +MQ+L+ +  K Y  A  KTLYISDSDKRKHF L V+MF GSG D+G F SKR
Sbjct: 61  GSEQQQAEMQKLNFDGQKVYGTAALKTLYISDSDKRKHFRLLVRMFLGSGQDLGTFPSKR 120

Query: 214 IKVISKPSKKKQSLKNAD 231
           IKVISKPSKK+QSLKNAD
Sbjct: 121 IKVISKPSKKRQSLKNAD 138

Members of this family are found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. They adopt a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding. This domain is also known as RHR-N (Rel-homology region) as it related to Rel domain proteins. Length = 138

>gnl|CDD|117815 pfam09270, BTD, Beta-trefoil DNA-binding domain

 Score =  106 bits (266), Expect = 2e-28
 Identities = 53/63 (84%), Positives = 58/63 (92%)

Query: 232 LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVR 291
           LCIASG+KVALFNRLRSQTVSTRYLHVENG FHASS QWGAFTIHLLDDD +ES+EF VR
Sbjct: 1   LCIASGSKVALFNRLRSQTVSTRYLHVENGAFHASSAQWGAFTIHLLDDDRNESDEFDVR 60

Query: 292 DWF 294
           + +
Sbjct: 61  EGY 63

Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR). Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG3743|consensus	622		100.0
PF09271	140	LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR0153	100.0
PF09270	158	BTD: Beta-trefoil DNA-binding domain; InterPro: IP	99.96

>KOG3743|consensus

Probab=100.00  E-value=5.7e-90  Score=680.01  Aligned_cols=279  Identities=53%  Similarity=0.809  Sum_probs=247.4

Q ss_pred             cccceeeccccccccccccCCCccceeeeccccccceeeeeeCCCCccccc-------------------cccccccCCC
Q psy14289         16 LSDVILTIKPWVGRNQTHKSAPRKHIHYLPSKLTRYFAMIVCDPSQNKVHY-------------------EGWVPHSLHY   76 (297)
Q Consensus        16 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------------~~~~~~~~~~   76 (297)
                      ..++....+.+.+++|+..++++.+++++..++.+- ++--.+++..+++-                   .+.+|  ...
T Consensus        79 e~~~~~ps~~td~~~q~qq~~t~~dp~~~~~n~~P~-ss~~~~~q~~~~~d~~~~~~~~r~~~q~~~~a~n~slp--g~~  155 (622)
T KOG3743|consen   79 EKSVEFPSVVTDEQSQPQQAPTSNDPDELAPNSIPP-SSPQGFNQNSKTFDEDSSVLQIRRAIQLQLQALNNSLP--GIA  155 (622)
T ss_pred             cceeeccccCcCcccchhcCCccCCchhccCCCCCC-CccccccccccccCccchhhhcchhHHHHHHHhhCcCc--ccc
Confidence            456778888999999999999999999998887541 00000111111100                   00111  112


Q ss_pred             CCCchhhhHHHHHHHHhcCCCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhccccccceeEEEEe
Q psy14289         77 RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIG  156 (297)
Q Consensus        77 ~~~~~~l~r~~mr~yL~~~~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~~~~~~~~~~~ig  156 (297)
                      ..++..+.|..|.++.+.+|+++|.|+||||||||||||||||||||||||+|+||+....|+.++++.|++.++|+|||
T Consensus       156 ~~q~~ti~r~~~~~~~k~~~l~tv~i~hasVaQKSYGnEKRylCPPpcvYL~G~gw~~~~~q~~~~~~~e~g~~i~~~~g  235 (622)
T KOG3743|consen  156 NLQEDTIHRIILTRSGKESCLVTVSILHASVAQKSYGNEKRYLCPPPCVYLNGSGWRSIKNQSLQDGAGETGAEISAYIG  235 (622)
T ss_pred             ccCcchhhhhHHHHhcCcceeEEEEEeehhhhhhhccccccccCCCCEEEEeccccccccchhhcchhccccceeeeeec
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccc-Ccc---ceEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccce
Q psy14289        157 IGNSDQDMQQLDLN-NGK---QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADL  232 (297)
Q Consensus       157 ig~~~qe~q~l~l~-~~k---~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dl  232 (297)
                      ||++.+++|+++++ .|.   +||+||+|||||+||||||+|++++++++|.++|.|.|++||||||||||||++||+||
T Consensus       236 ig~ssqe~qqln~~~qgd~~~~~~~akTlyisd~dK~k~f~ls~~~~~~~g~~~g~f~s~~ikViSKPSkKkqslKnsDl  315 (622)
T KOG3743|consen  236 IGSSSQEIQQLNFNTQGDSRFGYCLAKTLYISDSDKNKHFSLSMFLFYGNGLEIGLFTSSRIKVISKPSKKKQSLKNSDL  315 (622)
T ss_pred             ccccchhhhhhcccCCCccccccceeeeEEEecCccccccceEEEEEecCcceeeeEEeeeceeecCcccccccccccce
Confidence            99999999999997 354   49999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCEEEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEEEecCCC--CccCccccccceeeC
Q psy14289        233 CIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDE--SESEEFSVRDWFTSL  297 (297)
Q Consensus       233 CI~sGS~VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~Lvd~~~--~~~~~f~~rdgyi~~  297 (297)
                      ||.||++||||||||||||||||||||+|+|||++++|+||+|||+|+++  +++++|++|||||||
T Consensus       316 cI~sGs~VsLFNRlrSQtvsTrYl~vE~gqF~as~~~W~aftI~l~d~~e~g~~~~~f~~r~g~i~y  382 (622)
T KOG3743|consen  316 CIRSGSKVSLFNRLRSQTVSTRYLSVENGQFHASSTQWGAFTIHLLDDDENGSESCDFVVRDGYIKY  382 (622)
T ss_pred             eeccCCEEeeehhhhhhhcceeEEEeecceeeccCCccccEEEEEecCcccccccCCCCCCCcceee
Confidence            99999999999999999999999999999999999999999999999999  799999999999998

>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1

Probab=100.00  E-value=1.6e-62  Score=418.01  Aligned_cols=133  Identities=72%  Similarity=1.190  Sum_probs=100.4

Q ss_pred             EEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhcc--ccccceeEEEEecCCCcc---ccccccccCcc
Q psy14289         99 VIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGE--SEQAAQLCAFIGIGNSDQ---DMQQLDLNNGK  173 (297)
Q Consensus        99 tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~--~~~~~~~~~~igig~~~q---e~q~l~l~~~k  173 (297)
                      ||+||||||||||||||||||||||||||+|++|+.+.+++...+.  ++.+.++|+|||+|+.++   ++|++++++.+
T Consensus         1 Tv~i~hakVAQKSYG~EKRF~CPPP~v~L~G~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~   80 (140)
T PF09271_consen    1 TVIILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWKIKQQQLQDNGICDSEQGSEPCAFIGIGSSSQSQSEMQQLNLDEQK   80 (140)
T ss_dssp             EEEEEEESEEE-B-TT-----SS--EEEEESTHHHHHHHHHHHTT---STTTCSEEEEEECSTSSS-----EEE--TTTS
T ss_pred             CEEEEEhhHhhhhhcccccccCCCCeEEEECCCcCccccccccccccccccCCcceEEEeeCCCCccchhhhhccccccc
Confidence            7999999999999999999999999999999999988888776555  677899999999999877   89999997778


Q ss_pred             ceEee--eeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccc
Q psy14289        174 QYCAA--KTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNAD  231 (297)
Q Consensus       174 ~~~~a--KtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~d  231 (297)
                      .||+|  |+|||||+||||+|+|+|+||+++|+++|+|+|+|||||||||||||++||+|
T Consensus        81 ~~~~a~~K~LyISd~dKrK~f~L~~kl~~~~g~~igtF~Sk~IkVISKPSKKkqs~Kn~d  140 (140)
T PF09271_consen   81 DYGAAVFKTLYISDSDKRKHFELSVKLFYGNGREIGTFPSKPIKVISKPSKKKQSMKNTD  140 (140)
T ss_dssp             SEEE---TT---BTT---SEEEEEEEEEETTTEEEEEEEECEEEEESS---S-S-CCCGC
T ss_pred             hhheeeeeeeEeccccccceeEEEEEEEcCCCcEEEEEcCCeeeEEeCCChhhhhhhcCC
Confidence            99988  99999999999999999999999999999999999999999999999999997

It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.

>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry

Probab=99.96  E-value=7.8e-30  Score=221.94  Aligned_cols=66  Identities=67%  Similarity=1.060  Sum_probs=54.9

Q ss_pred             eeeecCCEEEEeeecCCcccceeeEEeeCC------eeeeecCCcccEEEEEecCCCCccCccccccceeeC
Q psy14289        232 LCIASGTKVALFNRLRSQTVSTRYLHVENG------NFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL  297 (297)
Q Consensus       232 lCI~sGS~VALFNRlRSQTVSTRYL~Ve~g------~F~Ass~~W~aF~I~Lvd~~~~~~~~f~~rdgyi~~  297 (297)
                      |||.||++|||||||||||||||||+||++      +|+|++++|+||+|||||+..++.++|+++||||+|
T Consensus         1 LCI~~Gs~VsLFNRirSQTVsTrYL~v~~~~~~~g~~f~as~~~W~~F~I~lvd~~~~~~~~~~~~~~~I~Y   72 (158)
T PF09270_consen    1 LCISSGSTVSLFNRIRSQTVSTRYLHVENGASGHGPRFVASSTQWDPFTIHLVDDPRSNAEPFDVREGYIHY   72 (158)
T ss_dssp             CB-BTTCEEEEEEECTTECCCEEEEEEETT------EEEEESS----EEEEEE-TT--SSSCEEEE-SB-BT
T ss_pred             CeecCCCEEEeEcccccccccceeeecCCCcccceeeeeeccCcccceEEEEecCCccccCCCCCCCCceec
Confidence            799999999999999999999999999999      999999999999999999999999999999999998

In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
3nbn_A	433	Crystal Structure Of A Dimer Of Notch Transcription		3e-94
2f8x_C	434	Crystal Structure Of Activated Notch, Csl And Maml		3e-94
3iag_C	422	Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site Lengt		4e-94
3brg_C	427	Csl (Rbp-Jk) Bound To Dna Length = 427		5e-94
3brf_A	478	Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C		7e-69
1ttu_A	477	Crystal Structure Of Csl Bound To Dna Length = 477		7e-69

>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription Complex Trimers On Hes1 Dna Length = 433

Iteration: 1
 Score =  341 bits (874), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Query: 77  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 4   RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 63
Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 64  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 122
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 123 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 182
Query: 257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
           HVE GNFHASS QWGAF IHLL           VRD +
Sbjct: 183 HVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 220

>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 434

Iteration: 1
 Score =  341 bits (874), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Query: 77  RNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQ 136
           R   +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++
Sbjct: 4   RPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKK 63
Query: 137 EQLLREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSV 196
           EQ+ R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSV
Sbjct: 64  EQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSV 122
Query: 197 KMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 256
           KMFYG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL
Sbjct: 123 KMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYL 182
Query: 257 HVENGNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
           HVE GNFHASS QWGAF IHLL           VRD +
Sbjct: 183 HVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGY 220

>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site Length = 422

Iteration: 1
 Score =  340 bits (873), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 180/214 (84%), Gaps = 1/214 (0%)
Query: 81  QRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 140
           +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+ 
Sbjct: 3   KRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQME 62
Query: 141 REGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFY 200
           R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSVKMFY
Sbjct: 63  RDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSVKMFY 121
Query: 201 GSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEN 260
           G+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 
Sbjct: 122 GNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG 181
Query: 261 GNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
           GNFHASS QWGAF IHLL           VRD +
Sbjct: 182 GNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 215

>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna Length = 427

Iteration: 1
 Score =  340 bits (873), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 180/214 (84%), Gaps = 1/214 (0%)
Query: 81  QRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 140
           +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+ 
Sbjct: 8   KRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQME 67
Query: 141 REGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFY 200
           R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSVKMFY
Sbjct: 68  RDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSVKMFY 126
Query: 201 GSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEN 260
           G+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 
Sbjct: 127 GNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG 186
Query: 261 GNFHASSTQWGAFTIHLLXXXXXXXXXXXVRDWF 294
           GNFHASS QWGAF IHLL           VRD +
Sbjct: 187 GNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 220

>pdb|3BRF|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221 Length = 478

Iteration: 1
 Score =  257 bits (656), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 164/235 (69%), Gaps = 37/235 (15%)
Query: 81  QRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 138
           Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L++++
Sbjct: 11  QSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDR 70
Query: 139 LLR---------------EGE---SEQAAQLCAFIGIGNSDQDMQQLDLNNGK------- 173
           + +               E +    +QA +L A+IGIG+   + QQLD + GK       
Sbjct: 71  VAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQ 130
Query: 174 -------QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQS 226
                   YCAAKTLYISDSDKRK+F L+ + FYG G +IG F S+RIKVISKPSKKKQS
Sbjct: 131 RQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQS 190
Query: 227 LKNAD---LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLL 278
           +KN D   LCIASGTKVALFNRLRSQTVSTRYLHVE   FHASST+WGAFTIHL 
Sbjct: 191 MKNTDCKYLCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIHLF 245

>pdb|1TTU|A Chain A, Crystal Structure Of Csl Bound To Dna Length = 477

Iteration: 1
 Score =  256 bits (655), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 164/235 (69%), Gaps = 37/235 (15%)
Query: 81  QRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQ 138
           Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L++++
Sbjct: 10  QSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDR 69
Query: 139 LLR---------------EGE---SEQAAQLCAFIGIGNSDQDMQQLDLNNGK------- 173
           + +               E +    +QA +L A+IGIG+   + QQLD + GK       
Sbjct: 70  VAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQ 129
Query: 174 -------QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQS 226
                   YCAAKTLYISDSDKRK+F L+ + FYG G +IG F S+RIKVISKPSKKKQS
Sbjct: 130 RQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQS 189
Query: 227 LKNAD---LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLL 278
           +KN D   LCIASGTKVALFNRLRSQTVSTRYLHVE   FHASST+WGAFTIHL 
Sbjct: 190 MKNTDCKYLCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIHLF 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
3iag_C	422	Recombining binding protein suppressor of hairless	1e-118
3brd_A	477	LIN-12 and GLP-1 phenotype protein 1, isoform A; p	1e-102

>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C* Length = 422

 Score =  346 bits (888), Expect = e-118
 Identities = 173/215 (80%), Positives = 190/215 (88%), Gaps = 1/215 (0%)

Query: 80  DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQL 139
            +RLTREAM  YL++R D  ++ILHAKVAQKSYGNEKRFFCPPPC+YL G GW+ ++EQ+
Sbjct: 2   PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 61

Query: 140 LREGESEQAAQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMF 199
            R+G SEQ +Q CAFIGIGNSDQ+MQQL+L  GK YC AKTLYISDSDKRKHFMLSVKMF
Sbjct: 62  ERDGCSEQESQPCAFIGIGNSDQEMQQLNLE-GKNYCTAKTLYISDSDKRKHFMLSVKMF 120

Query: 200 YGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 259
           YG+  DIGVF SKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE
Sbjct: 121 YGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVE 180

Query: 260 NGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWF 294
            GNFHASS QWGAF IHLLDDDESE EEF+VRD +
Sbjct: 181 GGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGY 215

>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A* Length = 477

 Score =  307 bits (787), Expect = e-102
 Identities = 143/258 (55%), Positives = 177/258 (68%), Gaps = 39/258 (15%)

Query: 74  LHYRNDDQRLTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEG 131
           L   +  Q LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+G
Sbjct: 3   LGSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQG 62

Query: 132 WRLRQEQLLREGES------------------EQAAQLCAFIGIGNSDQDMQQLDLNNGK 173
           W+L+++++ +  ++                  +QA +L A+IGIG+   + QQLD + GK
Sbjct: 63  WKLKKDRVAQLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGK 122

Query: 174 Q--------------YCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISK 219
                          YCAAKTLYISDSDKRK+F L+ + FYG G +IG F S+RIKVISK
Sbjct: 123 VRHPGDQRQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIGGFVSQRIKVISK 182

Query: 220 PSKKKQSLKNAD---LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIH 276
           PSKKKQS+KN D   LCIASGTKVALFNRLRSQTVSTRYLHVE   FHASST+WGAFTIH
Sbjct: 183 PSKKKQSMKNTDCKYLCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIH 242

Query: 277 LLDDDE--SESEEFSVRD 292
           L DD+    E++ F+VRD
Sbjct: 243 LFDDERGLQETDNFAVRD 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3iag_C	422	Recombining binding protein suppressor of hairless	100.0
3brd_A	477	LIN-12 and GLP-1 phenotype protein 1, isoform A; p	100.0

>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*

Probab=100.00  E-value=4.1e-101  Score=741.51  Aligned_cols=217  Identities=80%  Similarity=1.252  Sum_probs=214.1

Q ss_pred             chhhhHHHHHHHHhcCCCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhccccccceeEEEEecCC
Q psy14289         80 DQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGESEQAAQLCAFIGIGN  159 (297)
Q Consensus        80 ~~~l~r~~mr~yL~~~~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~~~~~~~~~~~igig~  159 (297)
                      +++|||++|++||++++|+||+||||||||||||||||||||||||||+|++|+.++++++++++++.+.++|+|||||+
T Consensus         2 ~~~l~r~~~~~yl~~~~e~tv~ilHakVAQKSYGnEKRFfCPPP~VyL~G~gW~~~~~~~~~~~~~~~~~~~~~~igi~~   81 (422)
T 3iag_C            2 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN   81 (422)
T ss_dssp             CCCCCHHHHHHHHHHCCCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTCCHHHHSEEEEEEESS
T ss_pred             cccccHHHHHHHHhCcCceEEEEEehhhhhhccccccccCCCCCEEEEeCCCccccchhhcccccccCCCceEEEEecCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccCccceEeeeeeeecCCCCCcceEEEEEEecCCCceeeEeecCCeEEEecCCcccccccccceeeecCCE
Q psy14289        160 SDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLKNADLCIASGTK  239 (297)
Q Consensus       160 ~~qe~q~l~l~~~k~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~dlCI~sGS~  239 (297)
                      ++|++|+|++ ++++||+||+|||||+||||||+|+||||+++|++||+|+|||||||||||||||++||+|+||.||++
T Consensus        82 s~q~~q~l~~-~~~~~~~aK~L~ISDsDKrK~F~L~vk~~~~~g~~iG~F~Sk~IkVISKPSKKkqs~Kn~dlcI~sGs~  160 (422)
T 3iag_C           82 SDQEMQQLNL-EGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTK  160 (422)
T ss_dssp             CSSCCEECCC-TTSSEEECTTCCCBTTCCCSEECEEEEEEETTCCEEEEEECCCEEEESSCCCSCCCGGGGGGBCBTTEE
T ss_pred             Cccccccccc-CCCceEEeccccccCCCcccCeEEEEEeccCCCceEEEeccccceEEECcchhhhcccCcceeecCCCE
Confidence            9999999999 689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEEEecCCCCccCccccccceeeC
Q psy14289        240 VALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDESESEEFSVRDWFTSL  297 (297)
Q Consensus       240 VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~Lvd~~~~~~~~f~~rdgyi~~  297 (297)
                      ||||||||||||||||||||+|+|+|++++|+||+|||+|++++++++|++|||||||
T Consensus       161 VaLFNRlrSQTVsTrYL~ve~g~f~ass~~W~aF~I~lvd~~~~~~~~~~~~~g~I~Y  218 (422)
T 3iag_C          161 VALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHY  218 (422)
T ss_dssp             EEEEECSSSCGGGCEEEEEETTEEEEESSCCCCEEEEECCTTCCSSSCCCCBCSBCBT
T ss_pred             EEEeeccccceeeeeEEEeeCCceEeecCceecEEEEEecCcccccccCCcCCCeEEe
Confidence            9999999999999999999999999999999999999999999999999999999998

>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*

Probab=100.00  E-value=1.4e-96  Score=719.06  Aligned_cols=224  Identities=64%  Similarity=1.051  Sum_probs=194.5

Q ss_pred             CCCCCCchhhhHHHHHHHHhcC--CCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhh---------
Q psy14289         74 LHYRNDDQRLTREAMERYLRDR--SDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLRE---------  142 (297)
Q Consensus        74 ~~~~~~~~~l~r~~mr~yL~~~--~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~---------  142 (297)
                      ++.+...+.||||+|++||+++  .+|+|+||||||||||||||||||||||||||+|++|+.+++++.+.         
T Consensus         3 ~~~~~~~~~~~~e~~~~yl~~~~~~~~tv~ilHakVaQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~s~~   82 (477)
T 3brd_A            3 LGSGDSVQSLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQ   82 (477)
T ss_dssp             ------CCCCCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC-----
T ss_pred             CCCCCCcchhhHHHHHHHhhcCCCCceEEEEeecchhhhccccccccCCCCCEEEEecCCcccccccccccccccccccc
Confidence            4556667999999999999998  58999999999999999999999999999999999999987654321         


Q ss_pred             --------c-cccccceeEEEEecCCCccccccccccCcc--------------ceEeeeeeeecCCCCCcceEEEEEEe
Q psy14289        143 --------G-ESEQAAQLCAFIGIGNSDQDMQQLDLNNGK--------------QYCAAKTLYISDSDKRKHFMLSVKMF  199 (297)
Q Consensus       143 --------g-~~~~~~~~~~~igig~~~qe~q~l~l~~~k--------------~~~~aKtL~ISDsDKrK~F~L~vk~~  199 (297)
                              . ..+..+++|+|||||++++|+|+|++++++              +||+||+|||||+||||||+|+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~gig~~~~e~q~L~~~~~kv~~~~~~~~d~~~~~~~~aKtLyISd~dKrK~F~L~~k~~  162 (477)
T 3brd_A           83 KDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFF  162 (477)
T ss_dssp             ------------CCTTSEEEEEECSCTTSCCEECCC--------------CCEEEEEECCSCCCBTTCCCSEECCEEEEE
T ss_pred             ccccccCccccccccceeEEEeccCCchhhhhhccccccccccccccccccccccceeeeeEeecCcccceeEEEEEEee
Confidence                    1 234578899999999999999999997777              89999999999999999999999999


Q ss_pred             cCCCceeeEeecCCeEEEecCCcccccccccc---eeeecCCEEEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEE
Q psy14289        200 YGSGHDIGVFTSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIH  276 (297)
Q Consensus       200 ~~~g~~iGtF~Sk~IkVISKPSKKkqs~Kn~d---lCI~sGS~VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~  276 (297)
                      +|+|++||+|+|||||||||||||||++||+|   |||.||++||||||||||||||||||||+|+|+|++++|+||+||
T Consensus       163 ~g~g~~iG~F~Sk~IkVISKPSKKkqs~Kn~d~~~lcI~sGs~VaLFNRlRSQTVsTrYL~Ve~g~f~ass~~W~aF~I~  242 (477)
T 3brd_A          163 YGCGMEIGGFVSQRIKVISKPSKKKQSMKNTDCKYLCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIH  242 (477)
T ss_dssp             ETTSCEEEEEECCCEEEESSCCCCC-----CCHHHHBCBTTSEEEEEECSTTCGGGCEEEEEETTEEEEESSCCCCEEEE
T ss_pred             cCCCceEEEecCCceeEEeCcchhhhhcccccccceeecCCCEEEeeeeecccccceeEEEecCCceEeecCccccEEEE
Confidence            99999999999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC--ccCccccccceeeC
Q psy14289        277 LLDDDES--ESEEFSVRDWFTSL  297 (297)
Q Consensus       277 Lvd~~~~--~~~~f~~rdgyi~~  297 (297)
                      |+|++++  ++++|++|||||||
T Consensus       243 Lvd~~~~~~e~~~f~~~dg~I~Y  265 (477)
T 3brd_A          243 LFDDERGLQETDNFAVRDGFVYY  265 (477)
T ss_dssp             EECC----CCCSEEEEECSBCBT
T ss_pred             EecCcccccccccccccCCeEEe
Confidence            9999988  89999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d3brda2	184	b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL	1e-82
d3brda3	161	b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CS	4e-31

>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  244 bits (625), Expect = 1e-82
 Identities = 92/183 (50%), Positives = 119/183 (65%), Gaps = 34/183 (18%)

Query: 83  LTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 140
           LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L+++++ 
Sbjct: 2   LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 61

Query: 141 REGE------------------SEQAAQLCAFIGIGNSDQDMQQLDLNNGK--------- 173
           +  +                   +QA +L A+IGIG+   + QQLD + GK         
Sbjct: 62  QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQ 121

Query: 174 -----QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFTSKRIKVISKPSKKKQSLK 228
                 YCAAKTLYISDSDKRK+F L+ + FYG G +IG F S+RIKVISKPSKKKQS+K
Sbjct: 122 DPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQSMK 181

Query: 229 NAD 231
           N D
Sbjct: 182 NTD 184

>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} Length = 161

class: All beta proteins
fold: beta-Trefoil
superfamily: DNA-binding protein LAG-1 (CSL)
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  112 bits (281), Expect = 4e-31
 Identities = 49/63 (77%), Positives = 54/63 (85%), Gaps = 2/63 (3%)

Query: 232 LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDE--SESEEFS 289
           LCIASGTKVALFNRLRSQTVSTRYLHVE   FHASST+WGAFTIHL DD+    E++ F+
Sbjct: 4   LCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIHLFDDERGLQETDNFA 63

Query: 290 VRD 292
           VRD
Sbjct: 64  VRD 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d3brda2	184	DNA-binding protein LAG-1 (CSL) {Caenorhabditis el	100.0
d3brda3	161	DNA-binding protein LAG-1 (CSL) {Caenorhabditis el	99.97

>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.2e-69  Score=473.65  Aligned_cols=150  Identities=61%  Similarity=1.047  Sum_probs=130.4

Q ss_pred             hhhHHHHHHHHh--cCCCeEEEEEechhhhhhcCCcccccCCCcEEEEecCCcchhhHHHhhhcc---------------
Q psy14289         82 RLTREAMERYLR--DRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLLREGE---------------  144 (297)
Q Consensus        82 ~l~r~~mr~yL~--~~~e~tV~IlHakVAQKSYGnEKRFfCPPP~VyL~G~~W~~~~~q~~~~g~---------------  144 (297)
                      .|||++|++||.  +++||+|+||||||||||||||||||||||||||+|++|+.+.+++.....               
T Consensus         1 ~l~~~~~~~~l~~~~~~~~~v~ilHakVAQKSYG~EKRFfCPPP~vyL~G~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d3brda2           1 SLTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVAQLYKTLKASAQKDAAIEND   80 (184)
T ss_dssp             CCCHHHHHHHHHSHHHHCEEEEEEEESEEECBCTTCCCCCSSCCEEEEESTHHHHHHHHHHHTTTTC-------------
T ss_pred             CchHHHHHHHHHhcccCceEEEEeechhhhhcccccccccCCCCEEEEecCccCCchhhhcccccccccccccccccccC
Confidence            389999999995  678999999999999999999999999999999999999998876543211               


Q ss_pred             ---ccccceeEEEEecCCCccccccccccCcc--------------ceEeeeeeeecCCCCCcceEEEEEEecCCCceee
Q psy14289        145 ---SEQAAQLCAFIGIGNSDQDMQQLDLNNGK--------------QYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIG  207 (297)
Q Consensus       145 ---~~~~~~~~~~igig~~~qe~q~l~l~~~k--------------~~~~aKtL~ISDsDKrK~F~L~vk~~~~~g~~iG  207 (297)
                         .+.+.++|+|||||++++++|+|++++|+              +||+||+|||||+||||||+|+|+||+++|.++|
T Consensus        81 ~~~~~~~~~~~~~~gig~s~~~~qqL~l~~gk~~~~~~~~~~~~~~~~~~aKtL~ISDsdKrK~f~l~lk~~~~~~~~iG  160 (184)
T d3brda2          81 PIHEQQATELVAYIGIGSDTSERQQLDFSTGKVRHPGDQRQDPNIYDYCAAKTLYISDSDKRKYFDLNAQFFYGCGMEIG  160 (184)
T ss_dssp             ----CCTTSEEEEEECSCTTSCCEECCC--------------CCEEEEEECCSCCCBTTCCCSEECCEEEEEETTSCEEE
T ss_pred             CcccccccceeeeeccCcchHHhhhhhcccCccccCCccccCcccccccccceeEeeccchhhcceeEEEEeecCCceEE
Confidence               25678999999999999999999997554              7999999999999999999999999999999999


Q ss_pred             EeecCCeEEEecCCcccccccccc
Q psy14289        208 VFTSKRIKVISKPSKKKQSLKNAD  231 (297)
Q Consensus       208 tF~Sk~IkVISKPSKKkqs~Kn~d  231 (297)
                      +|+|+|||||||||||||++||+|
T Consensus       161 ~F~S~~IkVISKPSKKkqs~Kn~d  184 (184)
T d3brda2         161 GFVSQRIKVISKPSKKKQSMKNTD  184 (184)
T ss_dssp             EEECCCEEEESSCCCCC-----CC
T ss_pred             EecCccceEEeCCcccccccccCC
Confidence            999999999999999999999997

>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: beta-Trefoil
superfamily: DNA-binding protein LAG-1 (CSL)
family: DNA-binding protein LAG-1 (CSL)
domain: DNA-binding protein LAG-1 (CSL)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=8.6e-32  Score=231.02  Aligned_cols=66  Identities=76%  Similarity=1.169  Sum_probs=62.7

Q ss_pred             eeeecCCEEEEeeecCCcccceeeEEeeCCeeeeecCCcccEEEEEecCCC--CccCccccccceeeC
Q psy14289        232 LCIASGTKVALFNRLRSQTVSTRYLHVENGNFHASSTQWGAFTIHLLDDDE--SESEEFSVRDWFTSL  297 (297)
Q Consensus       232 lCI~sGS~VALFNRlRSQTVSTRYL~Ve~g~F~Ass~~W~aF~I~Lvd~~~--~~~~~f~~rdgyi~~  297 (297)
                      |||.||++||||||||||||||||||||||+|+|++++|+||+|||+|+.+  +++++|++|||||||
T Consensus         4 LcI~sGs~VsLFNRlrSQTVsTrYl~ve~~~f~as~~~W~~F~I~l~d~~~~~~~~~~~~~~~~~I~Y   71 (161)
T d3brda3           4 LCIASGTKVALFNRLRSQTVSTRYLHVEGNAFHASSTKWGAFTIHLFDDERGLQETDNFAVRDGFVYY   71 (161)
T ss_dssp             HBCBTTSEEEEEECSTTCGGGCEEEEEETTEEEEESSCCCCEEEEEECC----CCCSEEEEECSBCBT
T ss_pred             EEecCCCEEEeeeeecccccceeEEEecCCeeEEeecceeceEEEEeccccccCcCccccCCCCeEEe
Confidence            899999999999999999999999999999999999999999999999988  688899999999998