Psyllid ID: psy1432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | 2.2.26 [Sep-21-2011] | |||||||
| P91679 | 743 | Peptide transporter famil | no | N/A | 0.435 | 0.497 | 0.386 | 5e-82 | |
| Q63424 | 729 | Solute carrier family 15 | yes | N/A | 0.510 | 0.595 | 0.366 | 6e-82 | |
| Q9ES07 | 729 | Solute carrier family 15 | yes | N/A | 0.421 | 0.491 | 0.401 | 1e-80 | |
| Q16348 | 729 | Solute carrier family 15 | yes | N/A | 0.474 | 0.552 | 0.382 | 5e-80 | |
| P46029 | 729 | Solute carrier family 15 | yes | N/A | 0.472 | 0.551 | 0.387 | 4e-78 | |
| P36836 | 707 | Solute carrier family 15 | no | N/A | 0.438 | 0.527 | 0.346 | 1e-76 | |
| Q9JIP7 | 709 | Solute carrier family 15 | no | N/A | 0.451 | 0.541 | 0.362 | 6e-76 | |
| Q8WMX5 | 708 | Solute carrier family 15 | no | N/A | 0.438 | 0.526 | 0.362 | 7e-76 | |
| P46059 | 708 | Solute carrier family 15 | no | N/A | 0.451 | 0.542 | 0.360 | 2e-75 | |
| P51574 | 710 | Solute carrier family 15 | no | N/A | 0.449 | 0.538 | 0.361 | 2e-74 |
| >sp|P91679|PEPT1_DROME Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 241/422 (57%), Gaps = 52/422 (12%)
Query: 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA 296
YPKS+ I++ EFCERF++ G+RT+L LYL + L ++E+ ATV
Sbjct: 32 YPKSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATV----------------- 74
Query: 297 ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV 356
L+H F L Y P+IGA++AD + G+Y+TI S VY
Sbjct: 75 ----------------------LFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYS 112
Query: 357 LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
LG +++ GAVP +PT T++GL+ I IGTGGIKPCV+A G+QF +P Q F L +F
Sbjct: 113 LGAMVVSFGAVPLSGMPTKAVTVVGLLLIAIGTGGIKPCVSAFGGDQFSLPAQSFQLAKF 172
Query: 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMY 476
FS++YF IN G + F P++R + C+G + C++L F VPA+LM+ ++++F+ GK +Y
Sbjct: 173 FSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAGKRLY 232
Query: 477 TIRCPKKNIILQFLKCM---FYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLA 533
+ P N+I +C+ F K+ S P + +LDYA+ R++ + K +
Sbjct: 233 RCQPPAGNMIFGVSRCIADAFKGWQKRRHSEPMES---FLDYAKPTVGSRMVQETKCLGR 289
Query: 534 ILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDN 593
IL +F+P P+FW+LFDQ GS WTFQA R D + G I PDQMQV++P+L L +PLFD
Sbjct: 290 ILRLFLPFPVFWALFDQQGSRWTFQATRMDGNVLGFQIKPDQMQVVNPLLILGFLPLFDY 349
Query: 594 CIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPEST------TKLECY 647
IYPAL + I + + A F+SAG +E+ +++ +T T L Y
Sbjct: 350 IIYPALARCGIRRPLQKLTLGLLLAALGFFLSAG-LEMKMEQAAYRATPIEPDMTHLRIY 408
Query: 648 NG 649
NG
Sbjct: 409 NG 410
|
Important role in absorbtion of dietary peptides. High-affinity transporter of alanylalanine. Dipeptide transport activity is proton dependent. Drosophila melanogaster (taxid: 7227) |
| >sp|Q63424|S15A2_RAT Solute carrier family 15 member 2 OS=Rattus norvegicus GN=Slc15a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 267/491 (54%), Gaps = 57/491 (11%)
Query: 235 ANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPII 294
++YP SI I+ EFCERFS+ G++ +L+LY L ++E +T +Y
Sbjct: 40 SSYPVSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVY------------- 86
Query: 295 GAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV 354
H F +LCYF PI+GA +ADS+ G+++TI S V
Sbjct: 87 --------------------------HAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLV 120
Query: 355 YVLGNILLCLGAVPTLALPTIKT--TLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412
YVLG++ LGA+P L + T +L+GL I +GTGGIKPCVAA G+QF E
Sbjct: 121 YVLGHVFKSLGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQF-EEEHAEA 179
Query: 413 LERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472
R+FSV+Y IN G + PM+R + C+G + CYAL F VP +LMVLALV+F +G
Sbjct: 180 RTRYFSVFYLAINAGSLISTFITPMLRGDVKCFG-QDCYALAFGVPGLLMVLALVVFAMG 238
Query: 473 KPMYTIRCPKKNIILQFLKCMFYSLSKKLS--SSPYQKKAHWLDYAEDEYSPRLISDMKT 530
MY P+ NI+ Q +KC++++L + S K+ HWLD+A ++Y LI+D+K
Sbjct: 239 SKMYRKPPPEGNIVAQVIKCIWFALCNRFRNRSGDLPKRQHWLDWAAEKYPKHLIADVKA 298
Query: 531 VLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPL 590
+ +LF++IPLP+FW+L DQ GS WT QA + + + + PDQMQV++P L LI IPL
Sbjct: 299 LTRVLFLYIPLPMFWALLDQQGSRWTLQANKMNGDLGFFVLQPDQMQVLNPFLVLIFIPL 358
Query: 591 FDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVE--LNLQENPPESTTK----- 643
FD IY + K RI + LR+M G +A AF A VE +N +P ++ +
Sbjct: 359 FDLVIYRLISKCRINFSSLRKMAVGMILACLAFAVAALVETKINGMIHPQPASQEIFLQV 418
Query: 644 LECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSS 703
L +G +K S+N+ + + + F N + +L S ++ NS
Sbjct: 419 LNLADGDVKVTVLGSRNNSLLVESVSSF-----QNTTHYSKLHLEAKSQDLHFHLKYNSL 473
Query: 704 SITNNKNITSK 714
S+ N+ ++ K
Sbjct: 474 SVHNDHSVEEK 484
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. Rattus norvegicus (taxid: 10116) |
| >sp|Q9ES07|S15A2_MOUSE Solute carrier family 15 member 2 OS=Mus musculus GN=Slc15a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/403 (40%), Positives = 230/403 (57%), Gaps = 45/403 (11%)
Query: 235 ANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPII 294
++YP SI I+ EFCERFS+ G++ +L+LY L ++E +T +Y
Sbjct: 40 SSYPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVY------------- 86
Query: 295 GAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV 354
H F +LCYF PI+GA +ADS+ G+++TI S V
Sbjct: 87 --------------------------HAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLV 120
Query: 355 YVLGNILLCLGAVPTLALPTIKT--TLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412
YVLG++ LGA+P L + T +L+GL I +GTGGIKPCVAA G+QF E
Sbjct: 121 YVLGHVFKSLGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQF-EEEHAEA 179
Query: 413 LERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472
R+FSV+Y IN G + PM+R + C+G E CYAL F +P +LMVLALV+F +G
Sbjct: 180 RTRYFSVFYLSINAGSLISTFITPMLRGDVKCFG-EDCYALAFGIPGLLMVLALVVFAMG 238
Query: 473 KPMYTIRCPKKNIILQFLKCMFYSLSKKLS--SSPYQKKAHWLDYAEDEYSPRLISDMKT 530
MY P+ NI+ Q KC+++++ + S K+ HWLD+A ++Y LI D+K
Sbjct: 239 SKMYRKPPPEGNIVAQVTKCIWFAICNRFRNRSEDIPKRQHWLDWAAEKYPKHLIMDVKA 298
Query: 531 VLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPL 590
+ ILF++IPLP+FW+L DQ GS WT QA + D + + PDQMQV++P L L+ IPL
Sbjct: 299 LTRILFLYIPLPMFWALLDQQGSRWTLQANKMDGDLGFFVLQPDQMQVLNPFLVLVFIPL 358
Query: 591 FDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNL 633
FD IY + K + + LR+M G +A AF A VE+ +
Sbjct: 359 FDLVIYRLISKCGVNFSSLRKMAVGMILACLAFAVAALVEIKI 401
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. Mus musculus (taxid: 10090) |
| >sp|Q16348|S15A2_HUMAN Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 299 bits (766), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 254/452 (56%), Gaps = 49/452 (10%)
Query: 235 ANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPII 294
+NYP SI I+ EFCERFS+ G++ +L LY L ++E +T +Y
Sbjct: 40 SNYPLSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIY------------- 86
Query: 295 GAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV 354
H F +LCYF PI+GA +ADS+ G+++TI S V
Sbjct: 87 --------------------------HAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLV 120
Query: 355 YVLGNILLCLGAVPTLALPTIKT--TLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412
YVLG+++ LGA+P L + T +L+GL I +GTGGIKPCVAA G+QF E++
Sbjct: 121 YVLGHVIKSLGALPILGGQVVHTVLSLIGLSLIALGTGGIKPCVAAFGGDQF---EEKHA 177
Query: 413 LER--FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470
ER +FSV+Y IN G + PM+R + C+G E CYAL F VP +LMV+ALV+F
Sbjct: 178 EERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFG-EDCYALAFGVPGLLMVIALVVFA 236
Query: 471 VGKPMYTIRCPKKNIILQFLKCMFYSLSKKLS--SSPYQKKAHWLDYAEDEYSPRLISDM 528
+G +Y P+ NI+ Q KC+++++S + S K+ HWLD+A ++Y +LI D+
Sbjct: 237 MGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQHWLDWAAEKYPKQLIMDV 296
Query: 529 KTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILI 588
K + +LF++IPLP+FW+L DQ GS WT QA R + + + PDQMQV++P+L LI I
Sbjct: 297 KALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMNRNLGFFVLQPDQMQVLNPLLVLIFI 356
Query: 589 PLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYN 648
PLFD IY + K I + LR+M G +A AF A VE+ + E P E +
Sbjct: 357 PLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAVEIKINEMAPAQPGPQEVFL 416
Query: 649 GFMKNATEWSKNSLSFMGNRALFLTGDRTNRK 680
+ A + K ++ N +L + ++ +K
Sbjct: 417 QVLNLADDEVKVTVVGNENNSLLIESIKSFQK 448
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. Homo sapiens (taxid: 9606) |
| >sp|P46029|S15A2_RABIT Solute carrier family 15 member 2 OS=Oryctolagus cuniculus GN=SLC15A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 174/449 (38%), Positives = 253/449 (56%), Gaps = 47/449 (10%)
Query: 231 EMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYF 290
++ +NYP SI I+ EFCERFS+ G++ +L+LY L ++E +T +YH F +LCYF
Sbjct: 36 KICGSNYPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYF 95
Query: 291 VPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRV 350
PI+GA +ADS+ G+++TI S VL H+ +L F PI+G
Sbjct: 96 TPILGAAIADSWLGKFKTIIYLSL-VNVLGHVIKSLSAF-PILGG--------------- 138
Query: 351 FSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQR 410
V+ +L +L+GL I +GTGGIKPCVAA G+QF E++
Sbjct: 139 ----KVVHTVL----------------SLVGLCLIALGTGGIKPCVAAFGGDQF---EEK 175
Query: 411 FYLE--RFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468
E R+FS +Y IN G + PM+R + C+ GE CYAL F VP +LMV+ALV+
Sbjct: 176 HAEERTRYFSGFYLAINAGSLISTFITPMLRGDVQCF-GEDCYALAFGVPGLLMVIALVV 234
Query: 469 FVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLS--SSPYQKKAHWLDYAEDEYSPRLIS 526
F +G MY P+ NI+ Q +KC+++++S + S K+ HWLD+A ++Y +LI
Sbjct: 235 FAMGSKMYKKPPPEGNIVAQVVKCIWFAISNRFKNRSEDIPKRQHWLDWAAEKYPKQLIM 294
Query: 527 DMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLI 586
D+KT+ +LF++IPLP+FW+L DQ GS WT QA + + + + PDQMQV++P+L LI
Sbjct: 295 DVKTLTRVLFLYIPLPMFWALLDQQGSRWTLQATKMNGNLGFFVLQPDQMQVLNPLLVLI 354
Query: 587 LIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLEC 646
IPLFD IY + K I LR+M G +A AF +A VE+ + E P E
Sbjct: 355 FIPLFDLVIYRLISKCGINFTSLRKMAVGMVLACLAFAAAATVEIKINEMAPPQPGSQEI 414
Query: 647 YNGFMKNATEWSKNSLSFMGNRALFLTGD 675
+ A + K L+ +GN L D
Sbjct: 415 LLQVLNLADDEVK--LTVLGNNNNSLLAD 441
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. Oryctolagus cuniculus (taxid: 9986) |
| >sp|P36836|S15A1_RABIT Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 243/427 (56%), Gaps = 54/427 (12%)
Query: 226 LSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFY 285
+ + K ++ YP SI+ I+ EFCERFS+ G+R +L LY R+ + + + +TV+YH F
Sbjct: 1 MGMSKSLSCFGYPLSIFFIVVNEFCERFSYYGMRALLILYFRNFIGWDDNLSTVIYHTFV 60
Query: 286 ALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRY 345
ALCY PI+GA++AD++ G+ +
Sbjct: 61 ALCYLTPILGALIADAWLGK---------------------------------------F 81
Query: 346 RTIRVFSFVYVLGNILLCLGAVPTL----------ALPT-IKTTLLGLIFIGIGTGGIKP 394
+TI S VY +G + L +V L +LP + ++GL+ I +GTGGIKP
Sbjct: 82 KTIVWLSIVYTIGQAVTSLSSVNELTDNNHDGTPDSLPVHVAVCMIGLLLIALGTGGIKP 141
Query: 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYGGESCYAL 453
CV+A G+QF +++ RFFS++Y IN G L I PM+R + + ++CY L
Sbjct: 142 CVSAFGGDQFEEGQEK-QRNRFFSIFYLAINAGSLLSTIITPMVRVQQCGIHVKQACYPL 200
Query: 454 GFVVPAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKL--SSSPYQKKAH 511
F +PA+LM ++L++F++G MY P+ NI+ + +KC+ +++ + S + K+AH
Sbjct: 201 AFGIPAILMAVSLIVFIIGSGMYKKFKPQGNILSKVVKCICFAIKNRFRHRSKQFPKRAH 260
Query: 512 WLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHI 571
WLD+A+++Y RLI+ +K V +LF++IPLP+FW+LFDQ GS WT QA +I + I
Sbjct: 261 WLDWAKEKYDERLIAQIKMVTRVLFLYIPLPMFWALFDQQGSRWTLQATTMSGRIGILEI 320
Query: 572 LPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVEL 631
PDQMQ ++ +L +IL+P+ D +YP + K + L++M G +A AF++A +++
Sbjct: 321 QPDQMQTVNTILIIILVPIMDAVVYPLIAKCGLNFTSLKKMTIGMFLASMAFVAAAILQV 380
Query: 632 NLQENPP 638
+ + P
Sbjct: 381 EIDKTLP 387
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q9JIP7|S15A1_MOUSE Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 237/416 (56%), Gaps = 32/416 (7%)
Query: 226 LSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFY 285
+ + K YP SI+ I+ EFCERFS+ G+R +L LY R+ L + + +T +YH F
Sbjct: 1 MGMSKSRGCFGYPLSIFFIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTFV 60
Query: 286 ALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRY 345
ALCY PI+GA++ADS+ G+++TI S ++Y I A+ V I + G
Sbjct: 61 ALCYLTPILGALIADSWLGKFKTIVSLS----IVYTIGQAVIS-VSSINDLTDHDHNGSP 115
Query: 346 RTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405
++ V + +++GL I +GTGGIKPCV+A G+QF
Sbjct: 116 DSLPVH-----------------------VALSMVGLALIALGTGGIKPCVSAFGGDQFE 152
Query: 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYGGESCYALGFVVPAVLMVL 464
+++ RFFS++Y IN G L I P++R + + ++CY L F VPA LM +
Sbjct: 153 EGQEK-QRNRFFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAV 211
Query: 465 ALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKL--SSSPYQKKAHWLDYAEDEYSP 522
AL++FV+G MY P+ NI+ + KC+ +++ + S Y K+ HWLD+A+++Y
Sbjct: 212 ALIVFVLGSGMYKKFQPQGNIMGKVAKCIGFAIKNRFRHRSKAYPKREHWLDWAKEKYDE 271
Query: 523 RLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPM 582
RLIS +K V ++F++IPLP+FW+LFDQ GS WT QA + +I I I PDQMQ ++ +
Sbjct: 272 RLISQIKMVTKVMFLYIPLPMFWALFDQQGSRWTLQATTMNGKIGAIEIQPDQMQTVNAI 331
Query: 583 LSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
L +I++P+ D +YP + K L++M G +A AF+ A V++ + + P
Sbjct: 332 LIVIMVPIVDAVVYPLIAKCGFNFTSLKKMTVGMFLASMAFVVAAIVQVEIDKTLP 387
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products. Mus musculus (taxid: 10090) |
| >sp|Q8WMX5|S15A1_CANFA Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 231/405 (57%), Gaps = 32/405 (7%)
Query: 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA 296
YP SI+ I+ EFCERFS+ G+R +L LY R + + + +T +YH F ALCY PI+GA
Sbjct: 12 YPLSIFFIVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGA 71
Query: 297 ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV 356
++ADS+ G+++TI S I Y + V + +I + Y + T
Sbjct: 72 LIADSWLGKFKTIVSLS--------IVYTIGQAVTAVSSINDLTDYNKDGT--------- 114
Query: 357 LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
P + +++GL I +GTGGIKPCV+A G+QF +++ RF
Sbjct: 115 -----------PDNLSVHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEK-QRNRF 162
Query: 417 FSVYYFIINIGGFLGMIFIPMIR-KSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
FS++Y IN G + I PM+R Y ++CY L F VPA LM ++L++FV+G M
Sbjct: 163 FSIFYLAINAGSLISTIVTPMLRVHECGIYSQKACYPLAFGVPAALMAVSLIVFVIGSGM 222
Query: 476 YTIRCPKKNIILQFLKCMFYSLSKKL--SSSPYQKKAHWLDYAEDEYSPRLISDMKTVLA 533
Y P+ N++ + +KC+ ++L + S + K+ HWLD+A+++Y RLIS +K V
Sbjct: 223 YKKFQPQGNVMGKVVKCIGFALKNRFRHRSKQFPKREHWLDWAKEKYDERLISQIKMVTK 282
Query: 534 ILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDN 593
++F++IPLP+FW+LFDQ GS WT QA +I + + PDQMQ ++ +L ++++P+ D
Sbjct: 283 VMFLYIPLPMFWALFDQQGSRWTLQATAMSGKIGLLEVQPDQMQTVNAILIVVMVPIMDA 342
Query: 594 CIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
+YP + K L+RM G +A AF+ A V+L + + P
Sbjct: 343 VVYPLIAKCGFNFTSLKRMTVGMFLASMAFVMAAIVQLEIDKTLP 387
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products. Canis familiaris (taxid: 9615) |
| >sp|P46059|S15A1_HUMAN Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 238/416 (57%), Gaps = 32/416 (7%)
Query: 226 LSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFY 285
+ + K + YP SI+ I+ EFCERFS+ G+R +L LY + + + + +T +YH F
Sbjct: 1 MGMSKSHSFFGYPLSIFFIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFV 60
Query: 286 ALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRY 345
ALCY PI+GA++ADS+ G+++TI S ++Y I A+ V I + + G
Sbjct: 61 ALCYLTPILGALIADSWLGKFKTIVSLS----IVYTIGQAVTS-VSSINDLTDHNHDGTP 115
Query: 346 RTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405
++ V + +L+GL I +GTGGIKPCV+A G+QF
Sbjct: 116 DSLPVH-----------------------VVLSLIGLALIALGTGGIKPCVSAFGGDQFE 152
Query: 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYGGESCYALGFVVPAVLMVL 464
+++ RFFS++Y IN G L I PM+R + + ++CY L F VPA LM +
Sbjct: 153 EGQEK-QRNRFFSIFYLAINAGSLLSTIITPMLRVQQCGIHSKQACYPLAFGVPAALMAV 211
Query: 465 ALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKL--SSSPYQKKAHWLDYAEDEYSP 522
AL++FV+G MY P+ NI+ + KC+ +++ + S + K+ HWLD+A+++Y
Sbjct: 212 ALIVFVLGSGMYKKFKPQGNIMGKVAKCIGFAIKNRFRHRSKAFPKREHWLDWAKEKYDE 271
Query: 523 RLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPM 582
RLIS +K V ++F++IPLP+FW+LFDQ GS WT QA +I + I PDQMQ ++ +
Sbjct: 272 RLISQIKMVTRVMFLYIPLPMFWALFDQQGSRWTLQATTMSGKIGALEIQPDQMQTVNAI 331
Query: 583 LSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
L +I++P+FD +YP + K L++M G +A AF+ A V++ + + P
Sbjct: 332 LIVIMVPIFDAVLYPLIAKCGFNFTSLKKMAVGMVLASMAFVVAAIVQVEIDKTLP 387
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products. Homo sapiens (taxid: 9606) |
| >sp|P51574|S15A1_RAT Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/418 (36%), Positives = 237/418 (56%), Gaps = 36/418 (8%)
Query: 226 LSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFY 285
+ + K YP SI+ I+ EFCERFS+ G+R +L LY R+ L + + +T +YH F
Sbjct: 1 MGMSKSRGCFGYPLSIFFIVVNEFCERFSYYGMRALLVLYFRNFLGWDDDLSTAIYHTFV 60
Query: 286 ALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAI--LADSFYG 343
ALCY PI+GA++ADS+ G+++TI S I Y + V + +I L D +
Sbjct: 61 ALCYLTPILGALIADSWLGKFKTIVSLS--------IVYTIGQAVISVSSINDLTDHDHD 112
Query: 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403
G+ L L + +++GL I +GTGGIKPCV+A G+Q
Sbjct: 113 ---------------------GSPNNLPL-HVALSMIGLALIALGTGGIKPCVSAFGGDQ 150
Query: 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYGGESCYALGFVVPAVLM 462
F +++ RFFS++Y IN G L I P++R + + ++CY L F VPA LM
Sbjct: 151 FEEGQEK-QRNRFFSIFYLAINAGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALM 209
Query: 463 VLALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKL--SSSPYQKKAHWLDYAEDEY 520
+AL++FV+G MY P+ NI+ + KC+ +++ + S + K+ HWLD+A+++Y
Sbjct: 210 AVALIVFVLGSGMYKKFQPQGNIMGKVAKCIRFAIKNRFRHRSKAFPKRNHWLDWAKEKY 269
Query: 521 SPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVIS 580
RLIS +K + ++F++IPLP+FW+LFDQ GS WT QA +I I I PDQMQ ++
Sbjct: 270 DERLISQIKIMTKVMFLYIPLPMFWALFDQQGSRWTLQATTMTGKIGTIEIQPDQMQTVN 329
Query: 581 PMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
+L +I++P+ D +YP + K L++M G +A AF+ A V++ + + P
Sbjct: 330 AILIVIMVPIVDAVVYPLIAKCGFNFTSLKKMTVGMFLASMAFVVAAIVQVEIDKTLP 387
|
Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| 242017667 | 801 | Oligopeptide transporter, putative [Pedi | 0.555 | 0.589 | 0.432 | 1e-123 | |
| 91078866 | 694 | PREDICTED: similar to oligopeptide trans | 0.437 | 0.536 | 0.486 | 1e-115 | |
| 270004136 | 649 | hypothetical protein TcasGA2_TC003454 [T | 0.431 | 0.565 | 0.487 | 1e-115 | |
| 345495080 | 699 | PREDICTED: peptide transporter family 1- | 0.501 | 0.609 | 0.403 | 1e-102 | |
| 158300464 | 713 | AGAP012154-PA [Anopheles gambiae str. PE | 0.44 | 0.524 | 0.442 | 1e-101 | |
| 270004137 | 1440 | hypothetical protein TcasGA2_TC003455 [T | 0.469 | 0.277 | 0.402 | 2e-98 | |
| 189235264 | 702 | PREDICTED: similar to oligopeptide trans | 0.469 | 0.568 | 0.402 | 3e-98 | |
| 170031940 | 716 | oligopeptide transporter [Culex quinquef | 0.438 | 0.520 | 0.417 | 1e-97 | |
| 321473738 | 630 | hypothetical protein DAPPUDRAFT_46936 [D | 0.42 | 0.566 | 0.433 | 2e-96 | |
| 383866059 | 689 | PREDICTED: peptide transporter family 1- | 0.424 | 0.523 | 0.434 | 2e-96 |
| >gi|242017667|ref|XP_002429309.1| Oligopeptide transporter, putative [Pediculus humanus corporis] gi|212514205|gb|EEB16571.1| Oligopeptide transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/534 (43%), Positives = 318/534 (59%), Gaps = 62/534 (11%)
Query: 149 PTSGSNKPQLKIIAMNLNHKHDYKIRLTGKLKSEKSLEVSKQEHAKTFEGVPVEYGMNQI 208
P K L ++L K + K L + KS+K L +K+E +K +
Sbjct: 34 PNQDFKKAPLSDSKLSLLTKKNVKNYLNSRKKSQKDLANNKKERSK-----------KSV 82
Query: 209 DVVLKDNLDNSSDIPVNLSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRD 268
+ + +LDN K YP+SI+LI+ EFCERFSFCGLRT+LSLYLR+
Sbjct: 83 RIFMTQSLDN-----------KNKPDMEYPRSIFLIIATEFCERFSFCGLRTILSLYLRN 131
Query: 269 VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328
+L F E ATV+ YH+F +CY
Sbjct: 132 ILLFHENKATVV---------------------------------------YHVFIMMCY 152
Query: 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG 388
FVP+IGAILADS GR+RTI FS +Y +GNI++C A P + L + T++GL I G
Sbjct: 153 FVPVIGAILADSCLGRFRTILYFSVIYTVGNIVMCFAATPPIGLEPVTFTMIGLSLIATG 212
Query: 389 TGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGE 448
TGGIKPCVAA G+QF VP+Q L++FF+++YF IN GGF+GMI P++RK+I C+G +
Sbjct: 213 TGGIKPCVAAFGGDQFKVPQQEHLLKQFFAIFYFTINFGGFVGMILTPILRKAITCFGDD 272
Query: 449 SCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQK 508
+CY+LGF PA LM+++L +F+ GKP+Y I+ PK+NI+++F CM Y++ K+ +
Sbjct: 273 TCYSLGFGFPAALMIISLGLFIAGKPLYRIKFPKQNIMVRFTTCMMYAICTKIRTKEKDP 332
Query: 509 KAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFG 568
HWL YAE ++ +LISDMK VLAIL++F PLP+FWSLFDQ GS WTFQA+R + ++FG
Sbjct: 333 NRHWLSYAEKKFDAKLISDMKNVLAILYLFFPLPIFWSLFDQQGSRWTFQASRMNGEVFG 392
Query: 569 IHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGY 628
I+PDQ+QVI+P L L+LIPLF+ IYP L +L +PL+RMV GG IAG AFI +G
Sbjct: 393 YQIMPDQIQVINPALVLLLIPLFNKGIYPCLGSCHVLVSPLQRMVAGGFIAGLAFICSGV 452
Query: 629 VELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNI 682
+E L++ P +K E + F+ N+ GN GD T K I
Sbjct: 453 LEYELEQTYPMLPSKGEAFINFV-NSLPCDLMITDSKGNSRTLSMGDMTTIKKI 505
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91078866|ref|XP_972417.1| PREDICTED: similar to oligopeptide transporter [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/411 (48%), Positives = 273/411 (66%), Gaps = 39/411 (9%)
Query: 229 MKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALC 288
MK ++YP +++ I+ EFCERFSFCGLRT+LS+YLR+ L FSE C
Sbjct: 1 MKMNFESSYPTAVFCIIATEFCERFSFCGLRTILSIYLRNELLFSEN------------C 48
Query: 289 YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTI 348
+TV+YH+F +CY VP+ GA+ ADS GRY TI
Sbjct: 49 ---------------------------STVIYHVFIMVCYIVPLAGAVCADSILGRYSTI 81
Query: 349 RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPE 408
FS VY++GNIL+C+GAVP L + +I + +GL I +GTGGIKPCVAA G+QF +P+
Sbjct: 82 LYFSVVYLIGNILMCMGAVPLLDISSITLSAVGLFLISVGTGGIKPCVAAFGGDQFRLPD 141
Query: 409 QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468
Q+ L+ FFS++YF IN+GGF+GMI P++RK + C+G ++CYALGF PA LMVL+L++
Sbjct: 142 QKDLLQHFFSLFYFTINLGGFVGMILTPILRKWVSCFGDDTCYALGFGFPAALMVLSLLL 201
Query: 469 FVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDM 528
F++GKP Y ++ PK+NI+LQF C Y+L+K+ S HWL A D+YS +LI DM
Sbjct: 202 FILGKPWYRLKTPKENIMLQFFNCTMYALAKRCKSGNKNPTKHWLHAARDKYSAKLIRDM 261
Query: 529 KTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILI 588
K V A+LF+++PLP+FWSLFDQ GS WTFQA+ D + GI I+PDQMQV++P + LILI
Sbjct: 262 KIVFAVLFLYVPLPIFWSLFDQQGSRWTFQASHMDGNVLGIQIVPDQMQVVNPAMVLILI 321
Query: 589 PLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPE 639
P+FD + P K+ ++EN L RM GG A AF+SAG +EL L+ P+
Sbjct: 322 PIFDKVVNPWFAKLHVMENALHRMAIGGLFASAAFLSAGVLELVLETTYPK 372
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270004136|gb|EFA00584.1| hypothetical protein TcasGA2_TC003454 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/406 (48%), Positives = 271/406 (66%), Gaps = 39/406 (9%)
Query: 234 SANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPI 293
++YP +++ I+ EFCERFSFCGLRT+LS+YLR+ L FSE C
Sbjct: 4 ESSYPTAVFCIIATEFCERFSFCGLRTILSIYLRNELLFSEN------------C----- 46
Query: 294 IGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF 353
+TV+YH+F +CY VP+ GA+ ADS GRY TI FS
Sbjct: 47 ----------------------STVIYHVFIMVCYIVPLAGAVCADSILGRYSTILYFSV 84
Query: 354 VYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYL 413
VY++GNIL+C+GAVP L + +I + +GL I +GTGGIKPCVAA G+QF +P+Q+ L
Sbjct: 85 VYLIGNILMCMGAVPLLDISSITLSAVGLFLISVGTGGIKPCVAAFGGDQFRLPDQKDLL 144
Query: 414 ERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473
+ FFS++YF IN+GGF+GMI P++RK + C+G ++CYALGF PA LMVL+L++F++GK
Sbjct: 145 QHFFSLFYFTINLGGFVGMILTPILRKWVSCFGDDTCYALGFGFPAALMVLSLLLFILGK 204
Query: 474 PMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLA 533
P Y ++ PK+NI+LQF C Y+L+K+ S HWL A D+YS +LI DMK V A
Sbjct: 205 PWYRLKTPKENIMLQFFNCTMYALAKRCKSGNKNPTKHWLHAARDKYSAKLIRDMKIVFA 264
Query: 534 ILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDN 593
+LF+++PLP+FWSLFDQ GS WTFQA+ D + GI I+PDQMQV++P + LILIP+FD
Sbjct: 265 VLFLYVPLPIFWSLFDQQGSRWTFQASHMDGNVLGIQIVPDQMQVVNPAMVLILIPIFDK 324
Query: 594 CIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPE 639
+ P K+ ++EN L RM GG A AF+SAG +EL L+ P+
Sbjct: 325 VVNPWFAKLHVMENALHRMAIGGLFASAAFLSAGVLELVLETTYPK 370
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495080|ref|XP_001603652.2| PREDICTED: peptide transporter family 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/491 (40%), Positives = 288/491 (58%), Gaps = 65/491 (13%)
Query: 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIG 295
YPKS++ I+ EFCERFS+ G+RT+LS YL D+L +++ ATV
Sbjct: 13 KYPKSVFFIICNEFCERFSYYGMRTVLSFYLVDILLYTQTMATV---------------- 56
Query: 296 AILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVY 355
+YH F YF P++GA+LADS+ G+YRTI S VY
Sbjct: 57 -----------------------IYHTFTMFAYFFPLLGAMLADSYLGKYRTILYLSVVY 93
Query: 356 VLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415
G +LL + +VP L LP + ++LGL+ I +GTGGIKPCVAA G+QF +P+Q YL
Sbjct: 94 AAGQLLLAVSSVPPLGLPVREFSILGLLMIALGTGGIKPCVAAFGGDQFKLPQQEHYLAV 153
Query: 416 FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
FFS++YF IN G + P++RK + CYG +CY L F+VPAVLM +++V+F GK +
Sbjct: 154 FFSLFYFSINSGSLISTAITPVLRKEVTCYGMTTCYPLAFLVPAVLMTVSIVIFFAGKRL 213
Query: 476 YTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAIL 535
Y IR P+ N++++ + C+ +++ +K+ S K+ HWLDY++D+Y LI D+K+VL +L
Sbjct: 214 YKIRQPEGNVVVKVVLCISHAIGRKIKSK--GKREHWLDYSDDKYDRHLIEDIKSVLKVL 271
Query: 536 FVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCI 595
+F+PLP FW+LFDQ GS WTFQA+R D ++FG I PDQ QVI+P+ +I IP+F I
Sbjct: 272 VLFVPLPFFWALFDQQGSRWTFQASRMDGEVFGYLIKPDQFQVINPLFIVIFIPVFQWAI 331
Query: 596 YPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQE----NPPESTTKLECYN--- 648
YP L+K L PLR+M GG +AG +FI + VELN++ P + ++ +N
Sbjct: 332 YPILEKFLYLNTPLRKMTAGGILAGLSFIISAIVELNIEPTYAVQPSQGLAQIRIFNTIN 391
Query: 649 -------GFMKNATEWSKNSLSFM-------GNRALFLTGDR--TNRKNIENGNLGGTSG 692
G N T +S +L+ + N + LT D T+ K + G L S
Sbjct: 392 CPASLTLGSSTNKTSYSLEALNMIQDLYVPVNNSSTVLTLDAKYTDCKQLPGGTL-TVSE 450
Query: 693 NMTEVKNGNSS 703
N+T V+ +S
Sbjct: 451 NLTLVEKTATS 461
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300464|ref|XP_320378.4| AGAP012154-PA [Anopheles gambiae str. PEST] gi|157013172|gb|EAA00193.4| AGAP012154-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 262/418 (62%), Gaps = 44/418 (10%)
Query: 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIG 295
YP+SI+ I++ EF ERF++ G+RT+L+LYL L +S ATV+
Sbjct: 3 RYPRSIFFIISNEFSERFNYYGMRTVLALYLTQKLAYSNDTATVI--------------- 47
Query: 296 AILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVY 355
YHIF +L YF P++GAILADS+ G+++TI S VY
Sbjct: 48 ------------------------YHIFTSLAYFFPLMGAILADSWLGKFKTILYLSIVY 83
Query: 356 VLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415
G+ L+ LGA+P L LP T+LGL+FI +G+GGIKPCV+A G+QF +PEQ L +
Sbjct: 84 CAGSTLIALGAIPPLNLPATSMTVLGLLFIAVGSGGIKPCVSAFGGDQFKLPEQAAQLAK 143
Query: 416 FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
FFS++YF IN G + P++R+ + C+G SC++L F VPAVLM+LA+V+FV G M
Sbjct: 144 FFSLFYFSINAGSLISTTLTPILREDVHCFGDNSCFSLAFGVPAVLMILAIVIFVCGGAM 203
Query: 476 YTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAIL 535
YTI+ P N+I+ KC+ +L+ + S +AHWLDYAE +Y +++D+K +L IL
Sbjct: 204 YTIKKPSGNMIVLVFKCIGNALAVRSKESSTSPRAHWLDYAESKYGKGIVADIKALLKIL 263
Query: 536 FVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCI 595
++IPLP+FW+LFDQ GS WTFQA R D ++ G I PDQMQVI+P+L L IP+F++ I
Sbjct: 264 ILYIPLPVFWALFDQQGSRWTFQATRMDGELAGYTIKPDQMQVINPLLILAFIPVFESVI 323
Query: 596 YPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQEN----PPESTTKLECYNG 649
YPAL KI I PL+++ GG +AG AF+ +G+VE+ L P +L +NG
Sbjct: 324 YPALAKIGI-RRPLQKLSLGGLLAGAAFVLSGFVEIALDSTEAMLPAAHEAQLRVFNG 380
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270004137|gb|EFA00585.1| hypothetical protein TcasGA2_TC003455 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/452 (40%), Positives = 270/452 (59%), Gaps = 53/452 (11%)
Query: 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA 296
YPKS++ I++ EFCERFS+ G+RT+LSLYLRD+L F+E D+T
Sbjct: 38 YPKSVFFIISNEFCERFSYYGMRTILSLYLRDILDFTEGDST------------------ 79
Query: 297 ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV 356
V+YH F L YF P++GAI++D++ G+++TI S +Y
Sbjct: 80 ---------------------VIYHTFTMLAYFFPLLGAIISDNWLGKFKTILYVSIIYA 118
Query: 357 LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
GNILL L + L +P I +LL L I +GTGGIKPCVAA G+QF +P+Q + +
Sbjct: 119 TGNILLALSSAEPLGIPKIPFSLLALFLIAVGTGGIKPCVAAFGGDQFVLPQQAVQIATY 178
Query: 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMY 476
FSV+YF+IN G + P++R+ + C+G SCY L F +P VLM+L++++F G P+Y
Sbjct: 179 FSVFYFMINAGSLISTFLTPILREDVHCFGQNSCYPLAFAIPGVLMILSVLIFFFGMPLY 238
Query: 477 TIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILF 536
++ P+ N+++Q +KC+++ K S +K HWLD++ED + LI D+K L +L
Sbjct: 239 KMKEPEGNVLVQVVKCIWHGAKKNWKSD--KKVDHWLDHSEDRFDRSLIEDIKATLKVLV 296
Query: 537 VFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIY 596
++IPLP+FW+ +DQ GS WTFQAAR D ++ + ILPDQMQV++P+L L+ IPLF+ +Y
Sbjct: 297 IYIPLPIFWACYDQQGSGWTFQAARMDGRVGALTILPDQMQVVNPLLILVFIPLFNYVVY 356
Query: 597 PALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQ----ENPPESTTKLECYNGFMK 652
PA KI L+ PL+RMV GG + AF + + L ++ + P + +L YN +
Sbjct: 357 PACAKINFLKTPLQRMVYGGLLTAIAFAVSACISLAVEGGDADLPSDGNCQLRIYNPYNT 416
Query: 653 NATEWSKN------SLSFMGN--RALFLTGDR 676
KN SL MG + LTGD+
Sbjct: 417 TLNLNVKNFAVNVTSLDPMGYGFAQIELTGDK 448
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189235264|ref|XP_972470.2| PREDICTED: similar to oligopeptide transporter [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/452 (40%), Positives = 270/452 (59%), Gaps = 53/452 (11%)
Query: 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA 296
YPKS++ I++ EFCERFS+ G+RT+LSLYLRD+L F+E D+T
Sbjct: 38 YPKSVFFIISNEFCERFSYYGMRTILSLYLRDILDFTEGDST------------------ 79
Query: 297 ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV 356
V+YH F L YF P++GAI++D++ G+++TI S +Y
Sbjct: 80 ---------------------VIYHTFTMLAYFFPLLGAIISDNWLGKFKTILYVSIIYA 118
Query: 357 LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
GNILL L + L +P I +LL L I +GTGGIKPCVAA G+QF +P+Q + +
Sbjct: 119 TGNILLALSSAEPLGIPKIPFSLLALFLIAVGTGGIKPCVAAFGGDQFVLPQQAVQIATY 178
Query: 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMY 476
FSV+YF+IN G + P++R+ + C+G SCY L F +P VLM+L++++F G P+Y
Sbjct: 179 FSVFYFMINAGSLISTFLTPILREDVHCFGQNSCYPLAFAIPGVLMILSVLIFFFGMPLY 238
Query: 477 TIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILF 536
++ P+ N+++Q +KC+++ K S +K HWLD++ED + LI D+K L +L
Sbjct: 239 KMKEPEGNVLVQVVKCIWHGAKKNWKSD--KKVDHWLDHSEDRFDRSLIEDIKATLKVLV 296
Query: 537 VFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIY 596
++IPLP+FW+ +DQ GS WTFQAAR D ++ + ILPDQMQV++P+L L+ IPLF+ +Y
Sbjct: 297 IYIPLPIFWACYDQQGSGWTFQAARMDGRVGALTILPDQMQVVNPLLILVFIPLFNYVVY 356
Query: 597 PALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQ----ENPPESTTKLECYNGFMK 652
PA KI L+ PL+RMV GG + AF + + L ++ + P + +L YN +
Sbjct: 357 PACAKINFLKTPLQRMVYGGLLTAIAFAVSACISLAVEGGDADLPSDGNCQLRIYNPYNT 416
Query: 653 NATEWSKN------SLSFMGN--RALFLTGDR 676
KN SL MG + LTGD+
Sbjct: 417 TLNLNVKNFAVNVTSLDPMGYGFAQIELTGDK 448
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170031940|ref|XP_001843841.1| oligopeptide transporter [Culex quinquefasciatus] gi|167871421|gb|EDS34804.1| oligopeptide transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 261/417 (62%), Gaps = 44/417 (10%)
Query: 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA 296
YPKSI+ I++ EF ERF++ G+RT+L+LYL L + + ATV+
Sbjct: 7 YPKSIFFIISNEFSERFNYYGMRTVLALYLTQKLNYDDDTATVI---------------- 50
Query: 297 ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV 356
YHIF +L YF P++GAILADS+ G+++TI S VY
Sbjct: 51 -----------------------YHIFTSLAYFFPLMGAILADSWLGKFKTILYLSIVYC 87
Query: 357 LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
+G+ L+ LGA+P L LP T+LGL+FI +G+GGIKPCV+A G+QF +PEQ L +F
Sbjct: 88 IGSTLIALGAIPPLNLPATSMTVLGLLFIAVGSGGIKPCVSAFGGDQFKLPEQAVQLAKF 147
Query: 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMY 476
FS++YF IN G + P++R+ + C+ C++L F VPAVLM+L++ +FV GK MY
Sbjct: 148 FSLFYFAINAGSLISTSLTPILREDVHCFNDPDCFSLAFGVPAVLMILSIFVFVCGKSMY 207
Query: 477 TIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILF 536
I+ P N+++ KC+ +LS ++ ++HWLDYAE +Y ++++D+K+++ IL
Sbjct: 208 MIKKPAGNMVVLVFKCIGNALSTRMKEREVNPRSHWLDYAESKYGRKIVADIKSLMKILV 267
Query: 537 VFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIY 596
++IPLP+FW+LFDQ GS WTFQA R + +I I PDQMQVI+P+L L IP F+ +Y
Sbjct: 268 LYIPLPVFWALFDQQGSRWTFQATRMNGEIGAFTIKPDQMQVINPLLILAFIPFFEGLVY 327
Query: 597 PALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQEN----PPESTTKLECYNG 649
P L+K+ + PL+++ GG +AG AF+ +G+VE+ L + P ++L YNG
Sbjct: 328 PILEKLGV-RTPLQKLTFGGILAGAAFVISGFVEIALDKTNAVMPAPHESQLRIYNG 383
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321473738|gb|EFX84705.1| hypothetical protein DAPPUDRAFT_46936 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/399 (43%), Positives = 257/399 (64%), Gaps = 42/399 (10%)
Query: 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIG 295
YPKS++ I+ EFCERF+F G+RT+L+LY+ +L FSE AT+
Sbjct: 2 KYPKSVFCIIVNEFCERFNFYGMRTVLTLYMSQILNFSEDKATIF--------------- 46
Query: 296 AILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVY 355
YH F L YF PI G+ILAD++ G+++TI + S Y
Sbjct: 47 ------------------------YHSFLMLSYFSPIPGSILADTYLGKFKTIAILSIFY 82
Query: 356 VLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415
G+I+L + A+P LP I ++ GL+ I IGTGGIKPCV+A G+QF P+Q LE
Sbjct: 83 AFGSIILAVAAIPNF-LPQIGFSMTGLLIIAIGTGGIKPCVSAFGGDQFVRPQQDRQLES 141
Query: 416 FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
FFSV+YF +N G + P++R+ + C+G ++CY L F VPAVLM++++V+F+ GKP+
Sbjct: 142 FFSVFYFSVNAGSLISTAVTPILREDVSCFGDDTCYPLAFGVPAVLMLISVVIFLAGKPL 201
Query: 476 YTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAIL 535
YTI+ P+ NI+ +F KC+ +++S+K + +K HWLD+A D++ +LI D+K VL++
Sbjct: 202 YTIKKPQGNIMGEFFKCIGHAISRKWKAKG-EKHDHWLDFASDKFDKQLIDDVKRVLSVG 260
Query: 536 FVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCI 595
FVFIPLP+FW+L+DQ GS WTFQA R + + G+ I PDQMQ+++P+L LIL+P+F+ I
Sbjct: 261 FVFIPLPVFWALYDQQGSRWTFQATRMNGDLGGVVIKPDQMQIVNPLLILILVPIFETVI 320
Query: 596 YPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQ 634
YP K +L PLRR+ CG + G +F+ +G+VE+ L+
Sbjct: 321 YPCFKKSGLL-TPLRRIGCGLVLCGLSFVVSGFVEIALE 358
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383866059|ref|XP_003708489.1| PREDICTED: peptide transporter family 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 42/403 (10%)
Query: 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIG 295
YPK++ I++ EFCERFSF G+RT L++YLR+ L +
Sbjct: 13 EYPKAVAFIVSNEFCERFSFYGIRTALTIYLRNYLNYE---------------------- 50
Query: 296 AILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVY 355
DS T ++H+F L YF P+ GAILADS+ G++ TI S VY
Sbjct: 51 ----DSI-------------TTTIFHVFVMLAYFFPVFGAILADSWLGKFNTIFYLSIVY 93
Query: 356 VLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415
+G ILL L A P + LP + +L+GL I IGTGGIK CVAA G+QF +P+Q YL
Sbjct: 94 AIGQILLTLSAAPIIGLPPREFSLIGLFLITIGTGGIKTCVAAFGGDQFVLPQQERYLST 153
Query: 416 FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
FFS++YF IN G + P++R + C+GG+ CY+L F+VPAVLM++++++FV GKPM
Sbjct: 154 FFSIFYFSINAGSLISSFLTPLLRSEVSCFGGD-CYSLAFLVPAVLMIISILIFVFGKPM 212
Query: 476 YTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAIL 535
Y I PK N+++ KC+ +++S+K++ K+ HWLDYA+DEY RLI D+K + ++
Sbjct: 213 YRILQPKGNVVVDVSKCVAHAISRKINPRG-AKREHWLDYADDEYDKRLIRDIKGAIQVM 271
Query: 536 FVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCI 595
+F+P+P+FW+LFDQ G+ WT QA R QI I PDQMQV++P+L L IPLF+ I
Sbjct: 272 KLFLPIPIFWALFDQQGTRWTIQATRMTGQIGSFTIQPDQMQVVNPLLVLAFIPLFEAFI 331
Query: 596 YPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
YP L+KI I PLR++ GG +A +F+++ VE L++ P
Sbjct: 332 YPVLNKIGI-HTPLRKLTVGGVLAALSFVASALVEFELEKTDP 373
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 850 | ||||||
| ZFIN|ZDB-GENE-030131-4661 | 718 | slc15a1b "solute carrier famil | 0.389 | 0.461 | 0.343 | 1.1e-89 | |
| FB|FBgn0028491 | 810 | CG2930 [Drosophila melanogaste | 0.384 | 0.403 | 0.355 | 6.5e-83 | |
| ZFIN|ZDB-GENE-091204-9 | 734 | slc15a1a "solute carrier famil | 0.387 | 0.448 | 0.325 | 1.8e-79 | |
| UNIPROTKB|F1RP40 | 707 | SLC15A1 "Uncharacterized prote | 0.445 | 0.536 | 0.296 | 2.5e-79 | |
| UNIPROTKB|Q16348 | 729 | SLC15A2 "Solute carrier family | 0.423 | 0.493 | 0.338 | 1.8e-73 | |
| ZFIN|ZDB-GENE-030131-5866 | 719 | slc15a2 "solute carrier family | 0.385 | 0.456 | 0.351 | 1.8e-72 | |
| UNIPROTKB|E2QWX1 | 740 | SLC15A2 "Uncharacterized prote | 0.38 | 0.436 | 0.357 | 2.8e-71 | |
| RGD|61972 | 729 | Slc15a2 "solute carrier family | 0.370 | 0.432 | 0.362 | 4.3e-70 | |
| UNIPROTKB|A5A4L7 | 729 | slc15A2 "Uncharacterized prote | 0.405 | 0.473 | 0.342 | 7.9e-70 | |
| UNIPROTKB|F1P0K5 | 714 | SLC15A1 "Uncharacterized prote | 0.378 | 0.450 | 0.323 | 2.8e-63 |
| ZFIN|ZDB-GENE-030131-4661 slc15a1b "solute carrier family 15 (oligopeptide transporter), member 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 1.1e-89, Sum P(3) = 1.1e-89
Identities = 121/352 (34%), Positives = 174/352 (49%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA---- 371
+T +YH F ALCY PI+GAI+ADS+ G+++TI S VY +G +++ + A+ +
Sbjct: 59 STTIYHTFVALCYLTPIMGAIIADSWLGKFKTIVYLSIVYTIGQVIMAISAIHDITDANR 118
Query: 372 --LPXXXXXXXXXXXX-----XXXXXXXXPCVAALCGEQFCVPEQRFYLERFFSVYYFII 424
P PCVAA G+QF Q FFS++Y I
Sbjct: 119 DGKPDNKTLHISLSMLGLILIALGTGGIKPCVAAFGGDQF-EDHQEKQRSTFFSIFYLSI 177
Query: 425 NIGGFLGMIFIPMIRKSIPC--YGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPK 482
N G L + P++R S C Y +SCY L G MY + PK
Sbjct: 178 NAGSLLSTLITPILR-SQECGIYAKQSCYPLAFGVPAALMVVALIVFVIGHKMYIMESPK 236
Query: 483 KNIILQFLKCMFYXXXXXXXXX--PYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIP 540
NI+LQ + C+ + Y K+ HW+D+AE++Y LI+ +K V+ +LF++IP
Sbjct: 237 GNILLQVINCIGFALNNRFRHRGKQYPKREHWMDWAEEKYDKLLIAQVKMVVKVLFLYIP 296
Query: 541 LPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVXXXXXXXXXXXXFDNCIYPALD 600
LP+FW+LFDQ GS WT QA D G I PDQMQ+ D+ IYP +
Sbjct: 297 LPMFWALFDQQGSRWTIQATTMDGNFGGFVIQPDQMQIVNPILIVIMVPIMDSAIYPLIK 356
Query: 601 KIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPE----STTKLECYN 648
RI PLR+M G +A AF++A ++L + E P+ S T+L+ N
Sbjct: 357 LCRINFTPLRKMTVGMVLAALAFVAAALLQLQIDETMPKFPSTSQTQLKFLN 408
|
|
| FB|FBgn0028491 CG2930 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 117/329 (35%), Positives = 180/329 (54%)
Query: 312 FSFD-ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL 370
+S D ATV++HIF YF+ + GAI++DS+ G+++TI S VY+ G++LL LGA+ L
Sbjct: 159 YSDDTATVVFHIFTMFVYFLCVFGAIISDSWLGKFKTILYLSLVYICGSVLLTLGAIGRL 218
Query: 371 ALPXXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFL 430
LP PCV+A G+QF VPEQ + FFS++YF IN G +
Sbjct: 219 NLPMETFTMLGLALIALGSGGIKPCVSAFGGDQFKVPEQVKQITSFFSLFYFSINAGSLI 278
Query: 431 GMIFIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFL 490
P++R+ + C+ +CY L G+ +Y ++ P N+++
Sbjct: 279 STTVTPILREDVSCFDDINCYPLAFGVPAVLMIVSVIIFVLGRSLYKMKPPAGNMVVLVS 338
Query: 491 KCMFYXXXXXXXXXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQ 550
++ + HWLDYA+ +Y +LI D+K ++ +LF+++PLP+FW+LFDQ
Sbjct: 339 STIWTALTTKCKEKKTNPREHWLDYADKKYDRQLIDDVKVLMRVLFLYLPLPVFWALFDQ 398
Query: 551 LGSSWTFQAARTDSQIFGIHILPDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENPLR 610
GS WTFQA R D + I PDQ+QV +D +YPAL + I PL+
Sbjct: 399 QGSRWTFQATRMDGDMGSWDIKPDQLQVLNPLLILIFIPLYDVALYPALKLVGI-RRPLQ 457
Query: 611 RMVCGGCIAGFAFISAGYVELNLQENPPE 639
++ GG +AG AFI +G VEL+L++ P+
Sbjct: 458 KLTMGGILAGIAFIISGVVELSLEKTYPD 486
|
|
| ZFIN|ZDB-GENE-091204-9 slc15a1a "solute carrier family 15 (oligopeptide transporter), member 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 112/344 (32%), Positives = 164/344 (47%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA---- 371
AT +YH F ALCY PI+GAI+ADS+ G+++TI S VY +G +++ + + +
Sbjct: 79 ATSIYHAFVALCYLTPILGAIIADSWLGKFKTIIYLSIVYAVGQVVMAVSTIHDITDANR 138
Query: 372 --LPXXXXXXXXXXXX-----XXXXXXXXPCVAALCGEQFCVPEQRFYLERFFSVYYFII 424
P PCVAA G+QF + R L FFSV+Y I
Sbjct: 139 DGTPDNFTLHIALSMLGLVLIALGTGGIKPCVAAFGGDQFQEHQSR-QLNTFFSVFYLCI 197
Query: 425 NIGGFLGMIFIPMIR-KSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKK 483
N G L + P++R + + + CY L G MYT P+
Sbjct: 198 NAGSLLSTLITPVLRAQECGIHTQQQCYPLAFGVPAALMVVSLVVFIAGSGMYTKTAPEG 257
Query: 484 NIILQFLKCMFYXXXXXXXXXP--YQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPL 541
NI+ KC+++ Y K+ HW+D+AE++Y LI+ +K VL +LF++IPL
Sbjct: 258 NIMGSVCKCIWFALNNRFRHRSDIYPKREHWMDWAEEKYDKLLIAQIKMVLKVLFLYIPL 317
Query: 542 PLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVXXXXXXXXXXXXFDNCIYPALDK 601
P+FW+LFDQ GS WT QA G + PDQMQ D I+P + K
Sbjct: 318 PMFWTLFDQKGSRWTLQATTMTGDFGGFVLQPDQMQTVNPILILTLVPIMDRIIFPLIKK 377
Query: 602 IRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLE 645
+ +PL+RM G A AFI+A V++ + + P + E
Sbjct: 378 CGLNFSPLKRMTVGMLFAATAFIAAALVQMEIDKTLPNFPSSSE 421
|
|
| UNIPROTKB|F1RP40 SLC15A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 2.5e-79, Sum P(3) = 2.5e-79
Identities = 119/401 (29%), Positives = 187/401 (46%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA---- 371
+T +YH F ALCY PI+GA++ADS+ G+++TI S VY +G +++ + ++ L
Sbjct: 51 STAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQVVMAVSSINDLTDFDH 110
Query: 372 --LPXXXXXXXXXXXXXXXXXXXX-----PCVAALCGEQFCVPEQRFYLERFFSVYYFII 424
P PCV+A G+QF +++ RFFS++Y I
Sbjct: 111 NGTPNSMSVHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEK-QRNRFFSIFYLAI 169
Query: 425 NIGGFLGMIFIPMIR-KSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKK 483
N G L I PM+R + + ++CY L G MY P+
Sbjct: 170 NAGSLLSTIITPMLRVQQCGIHSTQACYPLAFGVPAALMAVSLIVFVMGSRMYKKLKPQG 229
Query: 484 NIILQFLKCMFYXXXXXXX--XXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPL 541
N++ + +KC+ + + K+ HWLD+A+++Y RLI +K V ++F++IPL
Sbjct: 230 NVMAKVVKCIGFAIKNRFRHRSKKFPKREHWLDWAKEKYDERLICQIKMVTRVMFLYIPL 289
Query: 542 PLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVXXXXXXXXXXXXFDNCIYPALDK 601
P+FW+LFDQ GS WT QA + QI + I PDQMQ D +YP + K
Sbjct: 290 PMFWALFDQQGSRWTLQATTMNGQIGLLKIQPDQMQTVNAILIVIMVPIMDAVVYPLIAK 349
Query: 602 IRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP------ESTTK-LECYNGFMKNA 654
+ LR+M G +A AF++A V++ + + P E K L N M +
Sbjct: 350 CGLNFTSLRKMTVGMFLASMAFVAAAIVQVEIDKTLPVFPKGNEVQVKVLNIGNNSMSVS 409
Query: 655 TEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMT 695
+ +L M FLT D +I + G + +T
Sbjct: 410 FPGTTVTLDQMSQTHEFLTFDVNKLTSINISSAGSPATPVT 450
|
|
| UNIPROTKB|Q16348 SLC15A2 "Solute carrier family 15 member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 1.8e-73, Sum P(2) = 1.8e-73
Identities = 126/372 (33%), Positives = 186/372 (50%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA--LP 373
+T +YH F +LCYF PI+GA +ADS+ G+++TI S VYVLG+++ LGA+P L +
Sbjct: 82 STSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQVV 141
Query: 374 XXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLER--FFSVYYFIINIGGFLG 431
PCVAA G+QF E++ ER +FSV+Y IN G +
Sbjct: 142 HTVLSLIGLSLIALGTGGIKPCVAAFGGDQF---EEKHAEERTRYFSVFYLSINAGSLIS 198
Query: 432 MIFIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFLK 491
PM+R + C+G E CYAL G +Y P+ NI+ Q K
Sbjct: 199 TFITPMLRGDVQCFG-EDCYALAFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFK 257
Query: 492 CMFYXXXXXXX--XXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFD 549
C+++ K+ HWLD+A ++Y +LI D+K + +LF++IPLP+FW+L D
Sbjct: 258 CIWFAISNRFKNRSGDIPKRQHWLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLD 317
Query: 550 QLGSSWTFQAARTDSQIFGIHIL-PDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENP 608
Q GS WT QA R + + G +L PDQMQV FD IY + K I +
Sbjct: 318 QQGSRWTLQAIRMNRNL-GFFVLQPDQMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSS 376
Query: 609 LRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNR 668
LR+M G +A AF A VE+ + E P E + + A + K ++ N
Sbjct: 377 LRKMAVGMILACLAFAVAAAVEIKINEMAPAQPGPQEVFLQVLNLADDEVKVTVVGNENN 436
Query: 669 ALFLTGDRTNRK 680
+L + ++ +K
Sbjct: 437 SLLIESIKSFQK 448
|
|
| ZFIN|ZDB-GENE-030131-5866 slc15a2 "solute carrier family 15 (H+/peptide transporter), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 121/344 (35%), Positives = 182/344 (52%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL--ALP 373
+T +YH F LCYF P++GA++ADS+ G+++TI S VYV+G+++ +GA+P + +
Sbjct: 68 STAIYHAFSGLCYFTPLLGALIADSWLGKFKTIIYLSIVYVIGHVVKSVGAIPDVGDSTV 127
Query: 374 XXXXXXXXXXXXXXXXXXXXPCVAALCGEQFC---VPEQRFYLERFFSVYYFIINIGGFL 430
PCVAA G+QF + E+R +FFS++Y IN G L
Sbjct: 128 HIALSMVGLGLIALGTGGIKPCVAAFGGDQFDEDNIDERR----KFFSIFYMSINAGSVL 183
Query: 431 GMIFIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFL 490
I P++R + C+GG+ CYAL G +Y P+ N++++
Sbjct: 184 STIITPILRGDVQCFGGD-CYALAFGVPAALMVIALVVFISGSGLYKKSPPEGNVLVRVC 242
Query: 491 KCM-FYXXXXXXXXXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFD 549
KC+ F K++HWLD+AE++YS RLI ++K V +L ++IPLP+FW+LFD
Sbjct: 243 KCIGFAISNRWTNSKKSPKRSHWLDWAEEKYSKRLIQEIKMVCRVLVLYIPLPMFWALFD 302
Query: 550 QLGSSWTFQAARTDSQIFGIHIL-PDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENP 608
Q GS WT QA R + G I+ PDQMQ+ FD IYP + RI P
Sbjct: 303 QQGSRWTLQATRMNMDFGGGFIIKPDQMQMLNALLILVFIPIFDMGIYPLVGLCRIKLTP 362
Query: 609 LRRMVCGGCIAGFAFISAGYVEL----NLQENPPESTTKLECYN 648
L++M G +A AF +A VE+ + E PP + ++ YN
Sbjct: 363 LKKMATGMILAALAFCAATAVEVYVIKTVVEPPPAKESLVQVYN 406
|
|
| UNIPROTKB|E2QWX1 SLC15A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 2.8e-71, Sum P(2) = 2.8e-71
Identities = 120/336 (35%), Positives = 173/336 (51%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA--LP 373
+T +YH F +LCYF PI+GA +ADS+ G+++TI S VYVLG+++ LGA+P +
Sbjct: 93 STSIYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVVKSLGALPIIGGQTV 152
Query: 374 XXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLER--FFSVYYFIINIGGFLG 431
PCVAA G+QF E++ ER +FSV+Y IN G +
Sbjct: 153 HTVLSLVGLSLIALGTGGIKPCVAAFGGDQF---EEKHAEERTRYFSVFYLSINAGSLIS 209
Query: 432 MIFIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFLK 491
PM+R + C+G E CYAL G +Y P+ NI+ Q +K
Sbjct: 210 TFITPMLRGDVQCFG-EDCYALAFGVPGLLMVIALVVFTMGSKIYRKPPPEGNIVTQVVK 268
Query: 492 CMFYXXXXXXX--XXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFD 549
C+++ K+ HWLD+A ++Y +LI D+K + +LF++IPLP+FW+L D
Sbjct: 269 CIWFAISNRFNNRSGDIPKRQHWLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLD 328
Query: 550 QLGSSWTFQAARTDSQIFGIHIL-PDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENP 608
Q GS WT QA R + + G +L PDQMQV FD IY + K I +
Sbjct: 329 QQGSRWTLQATRMNGNL-GFFVLQPDQMQVLNPLLVLIFIPLFDLVIYRLVSKCGISFSS 387
Query: 609 LRRMVCGGCIAGFAFISAGYVELNLQE-NPPESTTK 643
LR+M G +A AF A VE+ + + PP+ K
Sbjct: 388 LRKMAVGMILASLAFAVAAAVEIKINKMTPPQPGPK 423
|
|
| RGD|61972 Slc15a2 "solute carrier family 15 (H+/peptide transporter), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.3e-70, Sum P(2) = 4.3e-70
Identities = 117/323 (36%), Positives = 165/323 (51%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA--LP 373
+T +YH F +LCYF PI+GA +ADS+ G+++TI S VYVLG++ LGA+P L +
Sbjct: 82 STSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPILGGKML 141
Query: 374 XXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMI 433
PCVAA G+QF E R+FSV+Y IN G +
Sbjct: 142 HTILSLVGLSLIALGTGGIKPCVAAFGGDQF-EEEHAEARTRYFSVFYLAINAGSLISTF 200
Query: 434 FIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFLKCM 493
PM+R + C+G + CYAL G MY P+ NI+ Q +KC+
Sbjct: 201 ITPMLRGDVKCFG-QDCYALAFGVPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVIKCI 259
Query: 494 FYXX--XXXXXXXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQL 551
++ K+ HWLD+A ++Y LI+D+K + +LF++IPLP+FW+L DQ
Sbjct: 260 WFALCNRFRNRSGDLPKRQHWLDWAAEKYPKHLIADVKALTRVLFLYIPLPMFWALLDQQ 319
Query: 552 GSSWTFQAARTDSQIFGIHIL-PDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENPLR 610
GS WT QA + + + G +L PDQMQV FD IY + K RI + LR
Sbjct: 320 GSRWTLQANKMNGDL-GFFVLQPDQMQVLNPFLVLIFIPLFDLVIYRLISKCRINFSSLR 378
Query: 611 RMVCGGCIAGFAFISAGYVELNL 633
+M G +A AF A VE +
Sbjct: 379 KMAVGMILACLAFAVAALVETKI 401
|
|
| UNIPROTKB|A5A4L7 slc15A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 7.9e-70, Sum P(2) = 7.9e-70
Identities = 123/359 (34%), Positives = 181/359 (50%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA--LP 373
+T +YH F +LCYF PI+GA +ADS+ G+++TI S VYVLG+++ LGA+P L +
Sbjct: 82 STSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGHMI 141
Query: 374 XXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLER--FFSVYYFIINIGGFLG 431
PCVAA G+QF E++ ER +FSV+Y IN G +
Sbjct: 142 HTILSMVGLSLIALGTGGIKPCVAAFGGDQF---EEKHAEERTRYFSVFYLSINAGSLIS 198
Query: 432 MIFIPMIRKSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKKNIILQFLK 491
PM+R + C+G + CYAL G +Y P+ NI+ Q ++
Sbjct: 199 TFVTPMLRGDVQCFG-KDCYALAFGVPGMLMIIALVVFSMGSKIYKKPPPEGNIVTQVVR 257
Query: 492 CMFYXXXXXXX--XXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFD 549
C+++ K+ HWLD+A ++YS +LI D+K + ILF++IPLP+FW+L D
Sbjct: 258 CIWFAISNRFKNRSGDIPKREHWLDWASEKYSKQLIMDVKALTRILFLYIPLPMFWALLD 317
Query: 550 QLGSSWTFQAARTDSQIFGIHIL-PDQMQVXXXXXXXXXXXXFDNCIYPALDKIRILENP 608
Q GS WT QA R + + G +L PDQMQV FD +Y + K I
Sbjct: 318 QQGSRWTLQATRMNGNL-GFFVLQPDQMQVLNPFLVLIFIPLFDLVVYRLVAKCGINFTS 376
Query: 609 LRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGN 667
LR+M G +A AF A VE+ + P E + + A + K ++ +GN
Sbjct: 377 LRKMAVGMILACLAFAVAAAVEIKINGMAPPQPDSQEGFLQVLNLANDEVK--VTVLGN 433
|
|
| UNIPROTKB|F1P0K5 SLC15A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
Identities = 109/337 (32%), Positives = 162/337 (48%)
Query: 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAV-------- 367
+T +YH F ALCY PI+GA++ADS+ G+++TI S VY +G ++ + ++
Sbjct: 58 STAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVMAVSSINDMTDQNR 117
Query: 368 ---PTLALPXXXXXXXXXXXXXXXXXXXXPCVAALCGEQFCVPEQRFYLERFFSVYYFII 424
P PCV+A G+QF Q RFFS++Y I
Sbjct: 118 DGNPDNIAVHIALSMTGLILIALGTGGIKPCVSAFGGDQF-EEHQEKQRSRFFSIFYLSI 176
Query: 425 NIGGFLGMIFIPMIR-KSIPCYGGESCYALGXXXXXXXXXXXXXXXXXGKPMYTIRCPKK 483
N G + I P++R + + + CY L G MY P+
Sbjct: 177 NAGSLISTIITPILRAQECGIHSRQQCYPLAFGVPAALMAVSLVVFIAGSGMYKKVQPQG 236
Query: 484 NIILQFLKCMFYXXXXXXX--XXPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPL 541
NI+++ KC+ + Y K+ HWLD+A ++Y RLI+ K VL +LF++IPL
Sbjct: 237 NIMVRVCKCIGFAIKNRFRHRSKEYPKREHWLDWASEKYDKRLIAQTKMVLKVLFLYIPL 296
Query: 542 PLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVXXXXXXXXXXXXFDNCIYPALDK 601
P+FW+LFDQ GS WT QA D + I PDQMQ D IYP + K
Sbjct: 297 PMFWALFDQQGSRWTLQATTMDGDFGAMQIQPDQMQTVNPILIIIMVPVVDAVIYPLIQK 356
Query: 602 IRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
+I PLRR+ G +AG AF++A +++ + + P
Sbjct: 357 CKINFTPLRRITVGMFLAGLAFVAAALLQVQIDKTLP 393
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 850 | |||
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-89 | |
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-56 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 1e-52 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-20 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-19 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 3e-17 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 3e-12 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 8e-08 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-05 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 0.003 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 2e-89
Identities = 157/391 (40%), Positives = 221/391 (56%), Gaps = 42/391 (10%)
Query: 253 FSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVF 312
FS+ G++T+L LYL + L ++E AT +YH F LCY P+IGA++ADS+ G+++TI
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTI--- 57
Query: 313 SFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLAL 372
LY S VYV+G+ L LGAVP+L
Sbjct: 58 ------LY------------------------------LSLVYVVGHALASLGAVPSLGH 81
Query: 373 P-TIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLG 431
P +L+GL I +GTGGIKPCV+A G+QF Q RFFS +YF IN G
Sbjct: 82 PLHDALSLVGLALIALGTGGIKPCVSAFGGDQF-EERQLSLRFRFFSFFYFAINAGSLFS 140
Query: 432 MIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLK 491
I P++R + C+G + C+ L F VP +LM LAL++F +G MY + P NI+ + +K
Sbjct: 141 TIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMK 200
Query: 492 CMFYSLSKKLSS-SPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQ 550
C+ ++L K+ + S + HWLD+A +Y R+I K +L +LF+FIPLP+FW+LFDQ
Sbjct: 201 CIVFALKKRFRTRSEDWPRLHWLDWAAPKYLIRMIRSTKRLLRVLFLFIPLPMFWALFDQ 260
Query: 551 LGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLR 610
GS WT QA R D + I PDQMQ ++P+L LIL+P+FD +YPAL K LR
Sbjct: 261 QGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTRFTSLR 320
Query: 611 RMVCGGCIAGFAFISAGYVELNLQENPPEST 641
+M G +A AF A ++ + PE
Sbjct: 321 KMAVGMLLAALAFAVAALLQNKINPTLPEEP 351
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 2e-56
Identities = 95/295 (32%), Positives = 138/295 (46%), Gaps = 9/295 (3%)
Query: 345 YRTIRVFSFVYVLGNILLCLGAVPTLALPTIKT-TLLGLIFIGIGTGGIKPCVAALCGEQ 403
++TI + S +Y +G++LL LGA+P P +GL I +GTGGIKP V+A +Q
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQ 60
Query: 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMV 463
F Q + FFS +YF IN G + I P +++ Y LGF +PAV M+
Sbjct: 61 F-DETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQ-------NVGYPLGFGLPAVGML 112
Query: 464 LALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPR 523
LAL++F++G Y + P + + K K +HWL +A ++Y+ R
Sbjct: 113 LALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKR 172
Query: 524 LISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPML 583
IS K + +FIPLP FW+LFDQ GS W QA I+ ILPDQM L
Sbjct: 173 SISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATL 232
Query: 584 SLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638
+ +P D IYP + + + F+ + L P
Sbjct: 233 IVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKRGLTLP 287
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 1e-52
Identities = 106/430 (24%), Positives = 180/430 (41%), Gaps = 83/430 (19%)
Query: 228 LMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLR----DVLKFSEKDATVLYHI 283
EM P+ +YLI +E ERFS+ G+R +L LYL D L F E AT L+
Sbjct: 10 TTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSA 69
Query: 284 FYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYG 343
+ +L Y PIIG LAD G RTI ++GAIL
Sbjct: 70 YGSLVYLTPIIGGWLADRVLGTRRTI----------------------VLGAIL------ 101
Query: 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403
+G+++L A+ +++ P +GL I +GTG KP +++L GE
Sbjct: 102 -----------MAIGHLVL---AISSVSGPGG--LYIGLALIIVGTGLFKPNISSLLGEL 145
Query: 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMV 463
+ P+ + F+++Y INIG + I ++ + +GF + AV M+
Sbjct: 146 Y--PKDDPRRDGGFTLFYMGINIGSLIAPIITGLL-------AINYGWHVGFGLAAVGMI 196
Query: 464 LALVMFVVGKPMYTIR--------CPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHW--- 512
+ LV+F++G+ ++ + L+ L+ Q
Sbjct: 197 IGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLL 256
Query: 513 --------LDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAART-D 563
+ +AE SP++ + + +LA + +F+ +FW+L++Q+GSS A R +
Sbjct: 257 VISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVN 316
Query: 564 SQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLR----RMVCGG--C 617
QIFG + P Q ++P ++ P+ + P++ ++ G
Sbjct: 317 RQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFL 376
Query: 618 IAGFAFISAG 627
I A I G
Sbjct: 377 ILLLAGIWFG 386
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 3e-20
Identities = 92/441 (20%), Positives = 165/441 (37%), Gaps = 110/441 (24%)
Query: 231 EMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYL--RDVLKFSEKDATVLYHIFYALC 288
E T +PK ++ + +E ERFS+ G++ +L++YL + L FS++ A +++ + AL
Sbjct: 2 EKTFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALV 61
Query: 289 YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTI 348
Y + +G D +G +T+
Sbjct: 62 YLLTSVGWWFGDRVWGTKKTM--------------------------------------- 82
Query: 349 RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPE 408
VLG I+L LG GL I +G+G K +++ G+ + +
Sbjct: 83 -------VLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD 135
Query: 409 QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468
+ F+++Y INIG F+ + +I ++ Y +GF + AV MV+ L+
Sbjct: 136 MPR-RDGGFTLFYMSINIGSFISPLLAGVIAENYG-------YHVGFNLAAVGMVIGLLT 187
Query: 469 FVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISD- 527
F G+ M L+ + + LS + + A A + L+
Sbjct: 188 FFAGRHM-----------LRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV 236
Query: 528 -------MKTVLAI--------------------LFVFIPLPL----FWSLFDQLGSSWT 556
M LA+ ++ +I L L FW L+ Q+ +S
Sbjct: 237 VIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLN 296
Query: 557 FQAART-DSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALD-KIRILENPLR---- 610
F A ++ G+ + Q ++P ++ P+ I+ L K + PL+
Sbjct: 297 FFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVL-AMIWTRLGRKGKDPTTPLKFTLG 355
Query: 611 RMVCGGCIAGFA----FISAG 627
+ CG FA F AG
Sbjct: 356 MLFCGASFLTFAASIWFADAG 376
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-19
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 710 NITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVT 769
N T + + TV +++ +PQYVL + GEVMF++ GL FS++QAP +MK+V
Sbjct: 531 NPTIDGLQLQIVEDVPVN-TVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVL 589
Query: 770 IAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLDMLLF 814
A W L+VA+GN+I++ I + Q EF L++ L+ + M +F
Sbjct: 590 QALWLLTVAIGNIIVLIIAEFENMAVQWAEFVLFSSLMLVVMAIF 634
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-17
Identities = 87/395 (22%), Positives = 160/395 (40%), Gaps = 85/395 (21%)
Query: 217 DNSSDIPVNLSLMKEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKD 276
+ V+L+ K+ PK+ YLI +IE ERF + GL+ ++++YL L SE D
Sbjct: 5 NQKPTESVSLNAFKQ------PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD 58
Query: 277 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAI 336
+ L+ F AL Y + IG L D G R I
Sbjct: 59 SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI--------------------------- 91
Query: 337 LADSFYGRYRTIRVFSFVYVLGNILLCLG-AVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395
+LG I+L +G A+ + +G+ I +G G K
Sbjct: 92 -------------------MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN 132
Query: 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGF 455
++L C + L+ F++YY INIG F M+ P + YG +++ F
Sbjct: 133 PSSLLST--CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YG----WSVAF 183
Query: 456 VVPAVLMVLALVMFVVGKPMYTIRCPKKNII-LQFLKCM--------FYSLSKKLSSSPY 506
+ V M++ +V F + K + + + K + +++ L +
Sbjct: 184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHN-- 241
Query: 507 QKKAHW----------LDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWT 556
Q+ A + + ++ ++ + + K ++A + + + +F+ L+ Q+ +S
Sbjct: 242 QEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILMLEAI-IFFVLYSQMPTSLN 300
Query: 557 FQAAR-TDSQIFGIHILPDQMQVISPMLSLILIPL 590
F A R + I GI + P+Q Q ++P +I P+
Sbjct: 301 FFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPI 335
|
Length = 500 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 3e-12
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 54/245 (22%)
Query: 233 TSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVP 292
A+ P++IY ++ ++ E FSF G+R +L LYL + LK+ + A Y +F A C
Sbjct: 3 KHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYC---- 55
Query: 293 IIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 352
+L Y PI+G LAD G + + +
Sbjct: 56 --------------------------------SLVYVTPILGGFLADKVLGNRMAVMLGA 83
Query: 353 FVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412
+ +G+ + LGA P+ L L I G G K V+ L GE + + R
Sbjct: 84 LLMAIGH--VVLGASEI--HPSF--LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR-- 135
Query: 413 LERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472
+ FS+ Y N+G + I ++ E +A+GF + AV M+ LV+F+ G
Sbjct: 136 RDGGFSLMYAAGNVGSIIAPIACGYAQE-------EYSWAMGFGLAAVGMIAGLVIFLCG 188
Query: 473 KPMYT 477
+T
Sbjct: 189 NRHFT 193
|
Length = 493 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 56/239 (23%)
Query: 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAI 297
P+ ++I +E ERF + G++ +L+++ L FS++ A + + F AL Y + IG
Sbjct: 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGY 72
Query: 298 LADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVL 357
+ D G RTI VL
Sbjct: 73 VGDHLLGTKRTI----------------------------------------------VL 86
Query: 358 GNILLCLGAVPT-LALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416
G I+L +G T ++L + L I +G G K A+L + C P + L+
Sbjct: 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSK--CYPPKDPRLDGA 144
Query: 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475
F+++Y INIG + + P+I +G Y++ + + +++AL+++ + M
Sbjct: 145 FTLFYMSINIGSLISLSLAPVIADK---FG----YSVTYNLCGAGLIIALLVYFACRGM 196
|
Length = 489 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 717 VFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLS 776
+ + + P V + ++V YVL S GE+ + GL AP ++K+ +A W L+
Sbjct: 379 LLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438
Query: 777 VALGNLIIICI 787
VA G + +
Sbjct: 439 VAAGQTLGGQV 449
|
Length = 498 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
Query: 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLG 381
F ++ L+D +GR R + + ++ LG++LL + L L +G
Sbjct: 42 AFSLGYALGSLLAGYLSD-RFGRRRVLLLGLLLFALGSLLLAFASSLWLLL-------VG 93
Query: 382 LIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441
+G+G G + P AAL E F E+ R ++ +G LG + ++ +S
Sbjct: 94 RFLLGLGGGALYPAAAALIAEWFPPKERG----RALGLFSAGFGLGALLGPLLGGLLAES 149
Query: 442 IPCYGGESCYALGFVVPAVLMVLALVMF 469
G + + ++ +L +L L +
Sbjct: 150 ---LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 15/153 (9%)
Query: 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLG 381
F + L+D +GR R V ++G +L LG + L ++ L+
Sbjct: 40 AFSLGYALAQPLAGRLSD-RFGRRR-------VLLIGLLLFALGLLLLLFASSLWLLLVL 91
Query: 382 LIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441
+ G+G G + P AAL + F P + R + +G LG + ++
Sbjct: 92 RVLQGLGGGALFPAAAALIADWF--PPEE--RGRALGLLSAGFGLGAALGPLLGGLL--- 144
Query: 442 IPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474
+G + + + ++ + VLA ++ P
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAALLLPRPPP 177
|
Length = 346 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 13/191 (6%)
Query: 289 YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD---SFYGRY 345
Y +IG LA + T ++ L+ + ++ IGA+ A +GR
Sbjct: 42 YDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101
Query: 346 RTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405
+++ + + ++V+G IL+ L A I +G + +GIG G V E
Sbjct: 102 KSLLIIALLFVIGAILMGLAAFALSVEMLI----VGRVLLGIGVGIASALVPMYLSE-IA 156
Query: 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465
R L S+Y I G + F K LG + ++
Sbjct: 157 PKALRGAL---TSLYQLAITFGILVAYGF--GSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Query: 466 LVMFVVGKPMY 476
+ F+ P +
Sbjct: 212 GLFFLPESPRW 222
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| KOG1237|consensus | 571 | 100.0 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.89 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.88 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.88 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.88 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.88 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.88 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.88 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.88 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.88 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.87 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.87 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.86 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.86 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.86 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.86 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.86 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.85 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.84 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.84 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.84 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.84 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.83 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.83 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.83 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.83 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.83 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.83 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.83 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.83 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.82 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.82 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.82 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.82 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.82 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.82 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.81 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.81 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.81 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.81 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.8 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.8 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.8 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.8 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.8 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.8 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.79 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.79 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.79 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.79 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.79 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.79 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.79 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.77 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.77 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.77 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.76 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.75 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.74 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.74 | |
| KOG0569|consensus | 485 | 99.73 | ||
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.73 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.72 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.72 | |
| KOG0254|consensus | 513 | 99.7 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.69 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.69 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.68 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.68 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.68 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.68 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.68 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.66 | |
| KOG2532|consensus | 466 | 99.66 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.65 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.62 | |
| KOG0255|consensus | 521 | 99.61 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.6 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.6 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.56 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.56 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.54 | |
| KOG1330|consensus | 493 | 99.52 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.51 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.46 | |
| KOG0253|consensus | 528 | 99.45 | ||
| KOG2504|consensus | 509 | 99.44 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.44 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.44 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.43 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.43 | |
| KOG2615|consensus | 451 | 99.43 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.39 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.38 | |
| KOG0252|consensus | 538 | 99.37 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.37 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.37 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| KOG2532|consensus | 466 | 99.31 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.29 | |
| KOG2533|consensus | 495 | 99.29 | ||
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.25 | |
| KOG3764|consensus | 464 | 99.25 | ||
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.23 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.22 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.22 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.2 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.2 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.2 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.18 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.17 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.17 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.16 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.14 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.14 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.12 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.12 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.11 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.11 | |
| KOG2325|consensus | 488 | 99.11 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.1 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.1 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.09 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.08 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.08 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.06 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.06 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.05 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.04 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.02 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.01 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.01 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.0 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.97 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.92 | |
| KOG4686|consensus | 459 | 98.91 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.86 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.84 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.83 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.83 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.83 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.82 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.81 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.8 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.8 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.8 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.78 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.77 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.74 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.74 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.73 | |
| KOG4686|consensus | 459 | 98.71 | ||
| KOG3626|consensus | 735 | 98.7 | ||
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.7 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.69 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.69 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.69 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.68 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.68 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.66 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.63 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.63 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.6 | |
| KOG2816|consensus | 463 | 98.59 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.59 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.58 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.57 | |
| KOG2563|consensus | 480 | 98.56 | ||
| PRK11043 | 401 | putative transporter; Provisional | 98.56 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.56 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.54 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.54 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.5 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.47 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.41 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.41 | |
| KOG0569|consensus | 485 | 98.41 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.4 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.4 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.39 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.34 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.34 | |
| KOG2504|consensus | 509 | 98.34 | ||
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.32 | |
| KOG3098|consensus | 461 | 98.24 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.22 | |
| KOG3762|consensus | 618 | 98.19 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.17 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.12 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.11 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.91 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.91 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.84 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.82 | |
| KOG0253|consensus | 528 | 97.81 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.71 | |
| KOG2533|consensus | 495 | 97.69 | ||
| KOG1330|consensus | 493 | 97.69 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.61 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.6 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.57 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.56 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.36 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.35 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.34 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.29 | |
| KOG3764|consensus | 464 | 97.25 | ||
| KOG4332|consensus | 454 | 97.25 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.2 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.14 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.11 | |
| KOG0254|consensus | 513 | 97.1 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.97 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.88 | |
| KOG0637|consensus | 498 | 96.83 | ||
| KOG0252|consensus | 538 | 96.82 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.82 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.74 | |
| KOG3762|consensus | 618 | 96.23 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.93 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.79 | |
| KOG3574|consensus | 510 | 95.67 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.32 | |
| KOG2563|consensus | 480 | 95.15 | ||
| KOG0255|consensus | 521 | 95.05 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.52 | |
| KOG3626|consensus | 735 | 94.1 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.07 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 93.99 | |
| KOG2816|consensus | 463 | 93.08 | ||
| KOG2615|consensus | 451 | 92.78 | ||
| KOG2325|consensus | 488 | 91.32 | ||
| KOG1479|consensus | 406 | 91.13 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.07 | |
| KOG1237|consensus | 571 | 90.37 | ||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 89.79 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 88.51 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 83.21 |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=400.66 Aligned_cols=529 Identities=41% Similarity=0.747 Sum_probs=408.9
Q ss_pred hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccc
Q psy1432 253 FSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPI 332 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (850)
+++|++.+.+..|+++.+|++...+..+...+....++.+++||+++|+++|
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG---------------------------- 52 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLG---------------------------- 52 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------
Confidence 4789999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceehhhHHHHHHHHHHHHHHHhhhhcc-cCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccc
Q psy1432 333 IGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL-ALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRF 411 (850)
Q Consensus 333 ~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l-~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~ 411 (850)
|++++.++.+++.+|.+++++++.+.. +.......++++.+.++|.|+++|+..++.+|+++ +.+++
T Consensus 53 -----------~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~-~~~~~ 120 (654)
T TIGR00926 53 -----------KFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE-ERQLS 120 (654)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC-ccchh
Confidence 999999999999999998887654322 22233457788889999999999999999999997 44456
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccccCCchhhHHHHHH
Q psy1432 412 YLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLK 491 (850)
Q Consensus 412 ~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~~~~~~~~~~~~~ 491 (850)
++.++++++|+++|+|+.+++++.+++.+..+|+|...+|..+|.+++++++++++++..+++++++.+|++++...+.+
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~ 200 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIK 200 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHH
Confidence 79999999999999999999999999997766666556799999999999999999999999988888888887788888
Q ss_pred HHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccccccc
Q psy1432 492 CMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHI 571 (850)
Q Consensus 492 v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~~~~~i 571 (850)
++..+.+++..........+|+|++.++...+++++.|++++++++++..++||+.+.|.++.++.|+.+++.+++++.+
T Consensus 201 vi~~a~~~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~i 280 (654)
T TIGR00926 201 CIVTALRKRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEI 280 (654)
T ss_pred HHHHHHHHhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEec
Confidence 88887776544322222367888887777778899999999999999999999999999999999999999888888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCC----CCCCccccccc
Q psy1432 572 LPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQEN----PPESTTKLECY 647 (850)
Q Consensus 572 ~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~----~~~~~~~~~~~ 647 (850)
++++++.++++.++++.|+++..++|.++|++.+.++.+++.+|++++++++++++.++..+.++ |......++++
T Consensus 281 p~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~ 360 (654)
T TIGR00926 281 QPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVL 360 (654)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEe
Confidence 99999999999999999999999999999987778899999999999999999999999776544 22222445666
Q ss_pred cCcc--cccccccc-cc-------cccc---cccccccccccc-------------------ccc------cccCCC---
Q psy1432 648 NGFM--KNATEWSK-NS-------LSFM---GNRALFLTGDRT-------------------NRK------NIENGN--- 686 (850)
Q Consensus 648 ~~~~--~~~~~~~~-~~-------~~~~---~~~~~~~~~~~~-------------------~~~------~~e~~~--- 686 (850)
|..+ |....... +. +... +...++...+.. ++. ..+++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (654)
T TIGR00926 361 NTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYV 440 (654)
T ss_pred cCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEE
Confidence 6544 44332211 00 0000 000111100000 000 000000
Q ss_pred ------------------CCCCCCCcccc--c---cCC----------------------Ccccc--------------c
Q psy1432 687 ------------------LGGTSGNMTEV--K---NGN----------------------SSSIT--------------N 707 (850)
Q Consensus 687 ------------------~~~~~~~~~~~--~---~~~----------------------~~~~~--------------~ 707 (850)
..|..-+|..+ . .++ +.... +
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (654)
T TIGR00926 441 LLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDN 520 (654)
T ss_pred EEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccc
Confidence 00000000000 0 000 00000 0
Q ss_pred -------------ccccccc-------cchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHH
Q psy1432 708 -------------NKNITSK-------FQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKT 767 (850)
Q Consensus 708 -------------~~~~~~~-------~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg 767 (850)
...+++- ...+.+.....+++.++.+|++|||+++++||.+.+..+.++.++++|++||.
T Consensus 521 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks 600 (654)
T TIGR00926 521 AKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKS 600 (654)
T ss_pred cccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHH
Confidence 0011110 01111122345677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhheeee
Q psy1432 768 VTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLDMLLFYRITKRY 821 (850)
Q Consensus 768 ~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~l~~l~~l~~~~~~~~~ 821 (850)
..+++|.+..++|++|+..+.+......++.+|+++|+++++.+++|..+.+.|
T Consensus 601 ~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 601 VLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988888999999999999999999999887654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=380.63 Aligned_cols=443 Identities=27% Similarity=0.444 Sum_probs=357.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Q psy1432 231 EMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLK----FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRY 306 (850)
Q Consensus 231 ~~~~~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LG----ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~ 306 (850)
+++..+|||.++.++.+|++||++||++...+..|++..++ ++.+++..+.+.+....++++++|||+|||++|
T Consensus 13 ~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG-- 90 (498)
T COG3104 13 EMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG-- 90 (498)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 45567799999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHH
Q psy1432 307 RTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIG 386 (850)
Q Consensus 307 k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~g 386 (850)
+|+++..+++++.+|.++++.+. ......+++++++++
T Consensus 91 -------------------------------------~~~tI~lGail~~iGh~~L~~~~-----~~~~~gl~i~L~~I~ 128 (498)
T COG3104 91 -------------------------------------TRRTIVLGAILMAIGHLVLAISS-----VSGPGGLYIGLALII 128 (498)
T ss_pred -------------------------------------hhHHHHHHHHHHHHHHHHHhccc-----cccccHHHHHHHHHH
Confidence 99999999999999999998863 012368899999999
Q ss_pred HHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 387 IGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 387 lG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
+|.|+++|+..++++|++| +++.||..+++.+|++.|+|+.++|++++++.++. +|+.+|.++++.+..++
T Consensus 129 iG~Gl~K~NiS~llg~ly~--~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-------g~~~gF~~aavGm~~gl 199 (498)
T COG3104 129 VGTGLFKPNISSLLGELYP--KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-------GWHVGFGLAAVGMIIGL 199 (498)
T ss_pred hccccccccHHHHHHHhcC--CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 56667999999999999999999999999999984 39999999999999999
Q ss_pred HHHHHhcccccccC--Cch-----hhHH-HHHHHHHHhhhh--cccCCchhhhhhhhh----------hhhc--ccCchh
Q psy1432 467 VMFVVGKPMYTIRC--PKK-----NIIL-QFLKCMFYSLSK--KLSSSPYQKKAHWLD----------YAED--EYSPRL 524 (850)
Q Consensus 467 v~~~~~~~~~~~~~--~~~-----~~~~-~~~~v~~~~~~~--~~~~~~~~~~~~~ld----------~a~~--~~s~~~ 524 (850)
+.++.+++.+.... +.. +... .....+...... ...+.. +..+..- +..+ ...+..
T Consensus 200 ~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (498)
T COG3104 200 VIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQ--NTFSGVLLVISILIAIIYFAEAFRSPKVF 277 (498)
T ss_pred HHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCccH
Confidence 99999877654322 111 1111 111111111111 000000 0111000 0111 123333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy1432 525 ISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAAR-TDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIR 603 (850)
Q Consensus 525 v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~-~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g 603 (850)
+|+||+++.+++++..++||+++.|.++++..|+.+ .+++..+++++++++|.+|++.+++++|+++...+|+.++.
T Consensus 278 -~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~- 355 (498)
T COG3104 278 -DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN- 355 (498)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-
Confidence 788999999999999999999999999999999876 46664569999999999999999999999999888875554
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccccccccccccccccccccccccccccc
Q psy1432 604 ILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIE 683 (850)
Q Consensus 604 ~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 683 (850)
+.++...++.+|+++++.+++++.+.....
T Consensus 356 ~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-------------------------------------------------- 385 (498)
T COG3104 356 KQPSTPIKFALGLILAGLGFLILLLAGIWF-------------------------------------------------- 385 (498)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Confidence 556888889999999999999998764211
Q ss_pred CCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy1432 684 NGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPR 763 (850)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~ 763 (850)
.++.+.+|.+|+++.|+++++||.+.+|.+.+++++.+|+
T Consensus 386 ----------------------------------------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~ 425 (498)
T COG3104 386 ----------------------------------------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP 425 (498)
T ss_pred ----------------------------------------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH
Confidence 0112346899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhHHHHHHHHHHHHHHHHHhhheee
Q psy1432 764 SMKTVTIAAWQLSVALGNLIIICIEQLRG-------YVGQAGEFFLYACLIFLDMLLFYRITKR 820 (850)
Q Consensus 764 ~~rg~~~gl~~~~~~lG~~i~~~i~~~~~-------~~~~~~~f~l~a~l~~l~~l~~~~~~~~ 820 (850)
++++.+||.|.++++.|+.++..+.+... .....+.|..+++...+..+......++
T Consensus 426 ~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 426 ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999998877322 2233567888888887777776665554
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=381.50 Aligned_cols=463 Identities=30% Similarity=0.477 Sum_probs=399.3
Q ss_pred cChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 236 ~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
..|++...+++.+.+|+.++|++..++..|++..+|.+...+....+.+.+..+..++++|++||.++|
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~g----------- 102 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLG----------- 102 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH-----------
Confidence 367899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhh-hhcccC------------C-----hHHH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGA-VPTLAL------------P-----TIKT 377 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a-~p~l~~------------~-----~~~l 377 (850)
|++++.++.+++.+|.+++.+.+ .+.+.+ + ....
T Consensus 103 ----------------------------ry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~ 154 (571)
T KOG1237|consen 103 ----------------------------RYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAV 154 (571)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHH
Confidence 88999999999888877776654 232211 1 2457
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHhhcCC--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHH
Q psy1432 378 TLLGLIFIGIGTGGIKPCVAALCGEQFCV--PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGF 455 (850)
Q Consensus 378 liialil~glG~g~~~~~~~al~ae~fp~--p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f 455 (850)
++.++.+.++|.|+.+|+..++.+|||++ |..+....++++|+++..++|..++.++..|++++. +|.++|
T Consensus 155 ~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-------~w~lgf 227 (571)
T KOG1237|consen 155 LYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-------GWKLGF 227 (571)
T ss_pred HHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-------cceeec
Confidence 88888889999999999999999999973 556667779999999999999999999999999884 499999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCchhhHHHHHHHHHHhhhhcccCCch-----------------hhhhhhhhhhhc
Q psy1432 456 VVPAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPY-----------------QKKAHWLDYAED 518 (850)
Q Consensus 456 ~I~a~l~lvalv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~ld~a~~ 518 (850)
.++.+++++++++|+.+.+.|+..+|.+++...+.+++..+.+++....+. .++.+++|++..
T Consensus 228 ~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~ 307 (571)
T KOG1237|consen 228 GIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAAL 307 (571)
T ss_pred cHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhc
Confidence 999999999999999999999999999999999999999998876532111 123455665442
Q ss_pred c----------------cCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccccc-ccchHHHHHHHHH
Q psy1432 519 E----------------YSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFG-IHILPDQMQVISP 581 (850)
Q Consensus 519 ~----------------~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~~~-~~i~~~~~~vi~~ 581 (850)
. ++.+++||.|++++++++++..+.+|+++.|+.+..+.|+..++++++. +.+|++.++++..
T Consensus 308 ~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~ 387 (571)
T KOG1237|consen 308 KTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFIL 387 (571)
T ss_pred cCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHH
Confidence 1 6778999999999999999999999999999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc---cccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccc
Q psy1432 582 MLSLILIPLFDNCIYPALDKIRI---LENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWS 658 (850)
Q Consensus 582 l~ili~~pl~~~~i~~~l~r~g~---~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (850)
+..+++.|++|+.+.|..+|... ..+.++|+.+|+++..+++...+.+|..+.+...
T Consensus 388 ~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~-------------------- 447 (571)
T KOG1237|consen 388 LSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAV-------------------- 447 (571)
T ss_pred HHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhh--------------------
Confidence 99999999999999999998765 4588999999999999999999999875521000
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHH
Q psy1432 659 KNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQ 738 (850)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 738 (850)
+ .....+++|.+|++||
T Consensus 448 ----------------------~-----------------------------------------~~~~~~~mSi~W~iPQ 464 (571)
T KOG1237|consen 448 ----------------------S-----------------------------------------LLVETNPMSILWQIPQ 464 (571)
T ss_pred ----------------------h-----------------------------------------ccCCCCCeeHHHHHHH
Confidence 0 0122357899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----h------------hHHHHH
Q psy1432 739 YVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVG----Q------------AGEFFL 802 (850)
Q Consensus 739 yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~----~------------~~~f~l 802 (850)
|+++|++|++.++.+.+|.++++|++||+.++++|.++.++|++++.++........ . -.+|++
T Consensus 465 yvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~l 544 (571)
T KOG1237|consen 465 YVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWL 544 (571)
T ss_pred HHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988775443221 1 247999
Q ss_pred HHHHHHHHHHHHhhheeeecccccc
Q psy1432 803 YACLIFLDMLLFYRITKRYKFVKMQ 827 (850)
Q Consensus 803 ~a~l~~l~~l~~~~~~~~~~~~~~~ 827 (850)
++.+..++...+....+||+.++.+
T Consensus 545 la~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 545 LAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHhhhhhheEEEEEeeeecccc
Confidence 9999999999999999999877654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=345.21 Aligned_cols=448 Identities=19% Similarity=0.330 Sum_probs=341.3
Q ss_pred ccccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeee
Q psy1432 233 TSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVF 312 (850)
Q Consensus 233 ~~~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~ 312 (850)
+.++|||.++.++..+++|++++|++.++++.|+++.+|++..+++++.+.+.+..++.++++|+++||++|
T Consensus 8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G-------- 79 (489)
T PRK10207 8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG-------- 79 (489)
T ss_pred chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc--------
Confidence 345699999999999999999999999999999999999999999999999999999999999999999449
Q ss_pred cccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhch
Q psy1432 313 SFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGI 392 (850)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~ 392 (850)
|||+++.+.+++.++.+++.++.. ....+++++.+.++|.|+.
T Consensus 80 -------------------------------~r~~~~~g~~~~~~g~~~~~~~~~------~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 80 -------------------------------TKRTIVLGAIVLAIGYFMTGMSLL------KPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHhccccc
Confidence 999999999999999888876421 1134567888999999999
Q ss_pred hhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 393 KPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 393 ~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.|+..++++|+|| +++++|++++++++++.|+|..++|.+++++.+.. +|+++|+++.+.++++++.+...
T Consensus 123 ~~~~~~li~~~~p--~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-------gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 123 KANPASLLSKCYP--PKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-------GYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred cCCHHHHHHHhcC--CCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999997 44447788999999999999999999999999884 39999999887777777777766
Q ss_pred ccccccc--CCchhhHHHHHHHH---------HHhhhhcccCCchhhhhhhhh----------hhhcccCchhhhhhHHH
Q psy1432 473 KPMYTIR--CPKKNIILQFLKCM---------FYSLSKKLSSSPYQKKAHWLD----------YAEDEYSPRLISDMKTV 531 (850)
Q Consensus 473 ~~~~~~~--~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~~~~~ld----------~a~~~~s~~~v~~~k~l 531 (850)
++.+++. +|++.+. +..+.+ ..... ...+... .....- ...++...+. .++++.
T Consensus 194 ~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~i~~~~f~~~~~~~~~-~~r~r~ 268 (489)
T PRK10207 194 RGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVCA-WLMHNVE--VANLVLIVLSIVVTIIFFREAFKLDK-TGRNKM 268 (489)
T ss_pred chhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHHH-HHHhhhh--HHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence 6555432 2222111 111110 01110 0000000 000000 0000111112 234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchh
Q psy1432 532 LAILFVFIPLPLFWSLFDQLGSSWTFQAAR-TDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLR 610 (850)
Q Consensus 532 l~~l~v~~~~ilf~~~~~q~~s~l~~~a~~-~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~ 610 (850)
+..+.+++..+++|+.+.|..+.++.++.+ .+.+..++.+++++++.+|++.++++.|+.+ .+++.+++++..+++..
T Consensus 269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~-~l~~rl~~r~~~~~~~~ 347 (489)
T PRK10207 269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILA-GIYTHLGSKGKDLSMPM 347 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHH-HHHHHHhhCCCCCCcHH
Confidence 667777888999999999999999888874 6666668889999999999999999999998 57788888777778999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCC
Q psy1432 611 RMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGT 690 (850)
Q Consensus 611 ~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 690 (850)
++.+|++++++++++++..+... . .
T Consensus 348 k~~~G~~l~~~~~~~~~~~~~~~----------------------------------------~-------~-------- 372 (489)
T PRK10207 348 KFTLGMFLCSLGFLTAAAAGMWF----------------------------------------A-------D-------- 372 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----------------------------------------c-------C--------
Confidence 99999999999988776543100 0 0
Q ss_pred CCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHH
Q psy1432 691 SGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTI 770 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~ 770 (850)
.....+.||+++.|++.++||++.+|.+.+++.+.+|++++|.++
T Consensus 373 -----------------------------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~ 417 (489)
T PRK10207 373 -----------------------------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFIL 417 (489)
T ss_pred -----------------------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHH
Confidence 001247789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------cchhHHHHHHHHHHHHHHHHHhhheeeecccccccccc
Q psy1432 771 AAWQLSVALGNLIIICIEQLRGY-----------VGQAGEFFLYACLIFLDMLLFYRITKRYKFVKMQLDES 831 (850)
Q Consensus 771 gl~~~~~~lG~~i~~~i~~~~~~-----------~~~~~~f~l~a~l~~l~~l~~~~~~~~~~~~~~~~~~~ 831 (850)
|+|++..++|+.++..+.+.... +...+.|...+++.++..++++.+.|+.++ .++.+|+
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ 488 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR-MINTPES 488 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccc
Confidence 99999999999999988764421 123577888888888888888777666543 3444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=344.71 Aligned_cols=442 Identities=20% Similarity=0.246 Sum_probs=327.8
Q ss_pred cChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 236 ~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
+|||.++.+++.+++|++++|++.+++|.|+++.+|++..+++.+...+.+..+++++++|+++||++|
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilG----------- 74 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG----------- 74 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----------
Confidence 489999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
|||++.++.++..++.+++.... .+...+++++.+.++|.|...++
T Consensus 75 ----------------------------rrr~iliG~il~~lg~lll~~~~------~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 75 ----------------------------NRMAVMLGALLMAIGHVVLGASE------IHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHhccccccc
Confidence 89999999988888876554321 11133555666677888888899
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccc
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~ 475 (850)
..++++|+|| +++++|.++++++|...|+|++++|++++++.+.. +|+.+|.++++.++++++.++..++.
T Consensus 121 ~~alv~elfp--~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-------Gw~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 121 VSCLLGELYE--PTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-------SWAMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred HHHHHHHHCC--CCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-------ChHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999996 44457999999999999999999999999998874 39999999988888888887776655
Q ss_pred cccc-----CCchhhHH--HHHH---HHH--H-hhhhcccCCch-h--------hhhhhhhhhhcccCchhhhhhHHHHH
Q psy1432 476 YTIR-----CPKKNIIL--QFLK---CMF--Y-SLSKKLSSSPY-Q--------KKAHWLDYAEDEYSPRLISDMKTVLA 533 (850)
Q Consensus 476 ~~~~-----~~~~~~~~--~~~~---v~~--~-~~~~~~~~~~~-~--------~~~~~ld~a~~~~s~~~v~~~k~ll~ 533 (850)
+.+. +|.++... .... +.. . .+......... . ...-+.-+.. . .+...+|+||+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~er~r~~~ 269 (493)
T PRK15462 192 FTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIY-R-KAENQKQRKELGL 269 (493)
T ss_pred hccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hcCCHHHHhhHHH
Confidence 4332 11111000 0000 000 0 00000000000 0 0000000000 0 1122357889999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHh-hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHH
Q psy1432 534 ILFVFIPLPLFWSLFDQLGSSWTFQAAR-TDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRM 612 (850)
Q Consensus 534 ~l~v~~~~ilf~~~~~q~~s~l~~~a~~-~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m 612 (850)
++.+++..++||+.+.|.+++++.++.+ +|++++++++|+.++|.+|++.++++.|++.. ++..+.|+++.++...++
T Consensus 270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~-lw~~l~~~~~~~s~~~Kf 348 (493)
T PRK15462 270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAW-VVKESVAGNRTVRIWGKF 348 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHH-HHHHHhcCCCCCCcHHHH
Confidence 9999999999999999999999998865 78888899999999999999999999999985 444444444456788889
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCC
Q psy1432 613 VCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSG 692 (850)
Q Consensus 613 ~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 692 (850)
.+|+++++++++++.......
T Consensus 349 a~g~~~~g~~f~~l~~~~~~~----------------------------------------------------------- 369 (493)
T PRK15462 349 ALGLGLMSAGFCILTLSARWS----------------------------------------------------------- 369 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-----------------------------------------------------------
Confidence 999999999999987654211
Q ss_pred CccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHH
Q psy1432 693 NMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAA 772 (850)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl 772 (850)
+++..++.+|++..|++.++||.+.+|.+.+++.+.+|++.||++||+
T Consensus 370 --------------------------------~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 370 --------------------------------AMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred --------------------------------CCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence 000125889999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhhcc-------------chhHHHHHHHHHHHHH--HHHHhhheeeecccc
Q psy1432 773 WQLSV-ALGNLIIICIEQLRGYV-------------GQAGEFFLYACLIFLD--MLLFYRITKRYKFVK 825 (850)
Q Consensus 773 ~~~~~-~lG~~i~~~i~~~~~~~-------------~~~~~f~l~a~l~~l~--~l~~~~~~~~~~~~~ 825 (850)
|.+.. ++|+.++..+.+..... .....|...+.+.++. .+++..+.+..|.|+
T Consensus 418 w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
T PRK15462 418 YMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRN 486 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99854 79999988877655321 1234566665544433 344444444444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=333.58 Aligned_cols=441 Identities=21% Similarity=0.336 Sum_probs=336.2
Q ss_pred cccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeee
Q psy1432 234 SANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDV--LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRV 311 (850)
Q Consensus 234 ~~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~--LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~ 311 (850)
..+|||.++.++..+++|++++|++.++++.|++++ +|++..+++++.+.+.++.+++++++|+++||++|
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G------- 77 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG------- 77 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc-------
Confidence 345889999999999999999999999999999988 99999999999999999999999999999999449
Q ss_pred ecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhc
Q psy1432 312 FSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGG 391 (850)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~ 391 (850)
||+++..+.+++.++.+++++. ++...+++++.+.++|.|+
T Consensus 78 --------------------------------~~~~l~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~l~g~g~g~ 118 (475)
T TIGR00924 78 --------------------------------TKKTMVLGGIVLMLGHFMLAMS-------IYPDLIFYGLGTIAVGSGL 118 (475)
T ss_pred --------------------------------hHHHHHHHHHHHHHHHHHHHhc-------ccHhHHHHHHHHHHhcccc
Confidence 9999999999888888777664 2345677888889999999
Q ss_pred hhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 392 IKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 392 ~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
..|+..++.+|++| ++++.+|++++++++++.|+|+.+||.+++++.+.. +|+.+|+++++.++++++.+..
T Consensus 119 ~~~~~~~~~a~~~~-~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-------g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 119 FKANPSSMVGKLYE-RGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-------GYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred ccCCHHHHHHHhcC-CCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 222256899999999999999999999999999874 4999999988877777777766
Q ss_pred hcccccccCCchhh-----HHHHH------HHHHHhhhhcccCCchhhhhhhhh----------h--hhcccCchhhhhh
Q psy1432 472 GKPMYTIRCPKKNI-----ILQFL------KCMFYSLSKKLSSSPYQKKAHWLD----------Y--AEDEYSPRLISDM 528 (850)
Q Consensus 472 ~~~~~~~~~~~~~~-----~~~~~------~v~~~~~~~~~~~~~~~~~~~~ld----------~--a~~~~s~~~v~~~ 528 (850)
.++.+++.++++++ ..... ..+....+........ ...+... . ...+.+.++ .++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 268 (475)
T TIGR00924 191 GRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV-VIANILLMTVTLAVIIFFFRLAFKPRLDA-VAR 268 (475)
T ss_pred cccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhccCCH-HHH
Confidence 66555432211110 00000 0011111110000000 0000000 0 000011112 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-hhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q psy1432 529 KTVLAILFVFIPLPLFWSLFDQLGSSWTFQAA-RTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILEN 607 (850)
Q Consensus 529 k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~-~~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~ 607 (850)
++..+++++++..+++|+.+.|..++++.+.. .++.+++++++++++++++|++.++++.|+++. +++.++|+++.++
T Consensus 269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~-~~~~l~~~~~~~~ 347 (475)
T TIGR00924 269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAM-IWTRLGRKGKDPT 347 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHH-HHHHHHhCCCCCC
Confidence 44556788899999999999999998876654 467777788999999999999999999999994 5566666555557
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCC
Q psy1432 608 PLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNL 687 (850)
Q Consensus 608 ~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 687 (850)
...++.+|.++.+++++.++......
T Consensus 348 ~~~k~~~G~~l~~~~~~~~~~~~~~~------------------------------------------------------ 373 (475)
T TIGR00924 348 TPLKFTLGMLFCGASFLTFAASIWFA------------------------------------------------------ 373 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhc------------------------------------------------------
Confidence 77789999999999999987652100
Q ss_pred CCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHH
Q psy1432 688 GGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKT 767 (850)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg 767 (850)
..+...++||+++++++.++||.+..|.+++++++.+|+++||
T Consensus 374 -------------------------------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g 416 (475)
T TIGR00924 374 -------------------------------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG 416 (475)
T ss_pred -------------------------------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 0011358899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHhhheeeec
Q psy1432 768 VTIAAWQLSVALGNLIIICIEQLRGYVG-QAGEFFLYACLIFLDMLLFYRITKRYK 822 (850)
Q Consensus 768 ~~~gl~~~~~~lG~~i~~~i~~~~~~~~-~~~~f~l~a~l~~l~~l~~~~~~~~~~ 822 (850)
+++|++.++.++|+++++.+.+...... ..+.|...++++++..++++++.|+.+
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877665543 456788888888888888877766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.22 Aligned_cols=435 Identities=23% Similarity=0.379 Sum_probs=325.9
Q ss_pred cChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 236 ~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
++||.++.++..+++|++++|++.++++.|+++++|++..+++++.+.+....+..++++|+++||++|
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G----------- 86 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLG----------- 86 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 577889999999999999999999999999999999999999999988888888888899999999549
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
||+++..+.+++.++.+++.+.. .....+++++.+.++|.|...++
T Consensus 87 ----------------------------~r~~~~~g~~~~~ig~~l~~~~~------~~~~~l~~~~~l~gig~g~~~~~ 132 (500)
T PRK09584 87 ----------------------------TKRVIMLGAIVLAIGYALVAWSG------HDAGIVYMGMATIAVGNGLFKAN 132 (500)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhhhcccCC
Confidence 89999999988888877766531 12355667888889999999999
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccc
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~ 475 (850)
..++++|+|| ++++++.+++++++++.++|+.++|.+++++.+.. +|+++|++.++.++++++.+++.++.
T Consensus 133 ~~~l~~~~f~--~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-------g~~~~F~i~~i~~~i~~i~~~~~~~~ 203 (500)
T PRK09584 133 PSSLLSTCYE--KDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-------GWSVAFALSVVGMLITVVNFAFCQRW 203 (500)
T ss_pred HHHHHHHhcC--CCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999996 44456777899999999999999999999999874 39999999888777777666655444
Q ss_pred cccc--CCchhhH------HHHHHHHHHhh-hhcccCCchhhhhhh----------hhhhhcccCchhhhhhHHHHHHHH
Q psy1432 476 YTIR--CPKKNII------LQFLKCMFYSL-SKKLSSSPYQKKAHW----------LDYAEDEYSPRLISDMKTVLAILF 536 (850)
Q Consensus 476 ~~~~--~~~~~~~------~~~~~v~~~~~-~~~~~~~~~~~~~~~----------ld~a~~~~s~~~v~~~k~ll~~l~ 536 (850)
+++. +|.+++. ........... .....+.+. ..+. .......+..++ .++++++..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (500)
T PRK09584 204 VKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE--IARMALGVVALGIVVIFGKEAFAMKG-AARRKMIVAFI 280 (500)
T ss_pred hccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHH
Confidence 3332 1211111 11111111111 000000000 0000 000111111122 34566667777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHh-hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHH
Q psy1432 537 VFIPLPLFWSLFDQLGSSWTFQAAR-TDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCG 615 (850)
Q Consensus 537 v~~~~ilf~~~~~q~~s~l~~~a~~-~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG 615 (850)
+++..++||+.+.|.++.+..|+.+ .+.+..++.+++++++.+|++.++++.|+.+.. + +|.+++.++.+++.+|
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~-~---~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAI-Y---NKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHH-H---HHhCcCCCcHHHHHHH
Confidence 8889999999999999999988865 555666788999999999999999999999853 3 4555556788999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCcc
Q psy1432 616 GCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMT 695 (850)
Q Consensus 616 ~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 695 (850)
+++++++++.++......
T Consensus 357 ~~l~~l~f~~l~~~~~~~-------------------------------------------------------------- 374 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFA-------------------------------------------------------------- 374 (500)
T ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Confidence 999999999987653210
Q ss_pred ccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHH
Q psy1432 696 EVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQL 775 (850)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~ 775 (850)
+....++.+|++++|++.++||++.+|.+.+++.+.+|+++||+++|+|.+
T Consensus 375 -----------------------------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 375 -----------------------------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred -----------------------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 001136788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-----------cchhHHHHHHHHHHHHHHHHHhhheeeec
Q psy1432 776 SVALGNLIIICIEQLRGY-----------VGQAGEFFLYACLIFLDMLLFYRITKRYK 822 (850)
Q Consensus 776 ~~~lG~~i~~~i~~~~~~-----------~~~~~~f~l~a~l~~l~~l~~~~~~~~~~ 822 (850)
+.++|+.++..+.+.... .+..+.|...+++.++.+++++.+.++.+
T Consensus 426 ~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 426 TTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877643221 11357788888777766766666665544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=241.66 Aligned_cols=336 Identities=28% Similarity=0.497 Sum_probs=229.6
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhhccc--CChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHH
Q psy1432 346 RTIRVFSFVYVLGNILLCLGAVPTLA--LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFI 423 (850)
Q Consensus 346 ~vili~~i~~~lg~ll~al~a~p~l~--~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~ 423 (850)
|+++++++++.+|.+++.+++.+... ..+...+++++.+.++|.|+.+|+..++++||++ +.+++++.++++++|++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~-~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD-EDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS-TTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc-ccchhhhhhhHHHHHHH
Confidence 68899999999999998887766442 2234688999999999999999999999999997 33378999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccccccc-CCchhhHHHHHHHHHHhhhhccc
Q psy1432 424 INIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIR-CPKKNIILQFLKCMFYSLSKKLS 502 (850)
Q Consensus 424 ~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 502 (850)
.|+|+.+++++.++++++. +|.++|.++++.++++++.++.++++|.+. +|.+.+..+..+.+.....++..
T Consensus 81 in~G~~~~~~~~~~i~~~~-------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNY-------GWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRK 153 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS--------HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHC
T ss_pred HhhhhHhhcccchhhcccc-------chhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhh
Confidence 9999999999999999884 499999999999999999999999999887 55666555533333333332222
Q ss_pred CCchhhhhhhhhhhh-----------------------------cccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1432 503 SSPYQKKAHWLDYAE-----------------------------DEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGS 553 (850)
Q Consensus 503 ~~~~~~~~~~ld~a~-----------------------------~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s 553 (850)
.... ...++++... ...+.+++++.|.+.+.++.+...++++..+.|...
T Consensus 154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~ 232 (372)
T PF00854_consen 154 LAVP-KGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNT 232 (372)
T ss_dssp CCH--HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHH
T ss_pred cccc-cchHHHHHhhhhhhhhhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhh
Confidence 2110 1112211110 001234455566666677766666666666666666
Q ss_pred HHHHHHHhhcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy1432 554 SWTFQAARTDSQIFG-IHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELN 632 (850)
Q Consensus 554 ~l~~~a~~~~~~~~~-~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~ 632 (850)
....+..+++..+++ +++|+++++.++++.+++++|+++++++|+++ +++..++..++.+|.++++++++..+.++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~ 311 (372)
T PF00854_consen 233 FFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQPSPPQKFGIGMVFAILAMFVAAIVEIR 311 (372)
T ss_dssp HHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T------HHHHHHH-HHHHHHHHTTTHHHH-
T ss_pred HHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hcccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 666666677666777 89999999999999999999999999999987 5666788899999999999999988877753
Q ss_pred ccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccc
Q psy1432 633 LQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNIT 712 (850)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (850)
+. | ...
T Consensus 312 r~-----------------~---------------------------~~~------------------------------ 317 (372)
T PF00854_consen 312 RL-----------------C---------------------------YAQ------------------------------ 317 (372)
T ss_dssp -------------------H---------------------------H--------------------------------
T ss_pred hh-----------------h---------------------------ccc------------------------------
Confidence 30 0 000
Q ss_pred cccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHH
Q psy1432 713 SKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVA 778 (850)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~ 778 (850)
+....+.+|+++.|++.+++|.+..+.+.+..++.+|+++.+.++|+|+....
T Consensus 318 -------------~~~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 318 -------------PCGKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp ---------------TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred -------------ccCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 01122347888999999999999999999977777777777777777766554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-19 Score=211.54 Aligned_cols=160 Identities=18% Similarity=0.114 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccc
Q psy1432 259 RTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338 (850)
Q Consensus 259 ~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (850)
...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-G---------------------------------- 230 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-G---------------------------------- 230 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C----------------------------------
Confidence 44555677788999999999999999999999999999999999 9
Q ss_pred cccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHH
Q psy1432 339 DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418 (850)
Q Consensus 339 ~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~ 418 (850)
||++++++.++..++.+++++. ++...+++++++.|+|.|+..++..++++|.+| .++|+...+
T Consensus 231 -----RR~~lii~lil~~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p----~~~Rg~~~g 294 (742)
T TIGR01299 231 -----RKQCLLICLSVNGFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLA----QEKRGEHLS 294 (742)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHH
Confidence 8999988888777777776654 456788899999999999999999999999998 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---C---CCccchHHHHHHHHHHHHHHHHH
Q psy1432 419 VYYFIINIGGFLGMIFIPMIRKSIPCY---G---GESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 419 ~~~~~~~iGg~iap~I~~~I~~~~g~~---g---~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
++.....+|+++++.++.++....|.. + ...+|++.+++.++..+++++..
T Consensus 295 ~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 295 WLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887776543210 0 11359998888776655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=199.38 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
+|.++..+...++...+.+...++++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g------------- 71 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-D------------- 71 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-------------
Confidence 36678888889999999999999999999999999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.++..++.++..+. ++...+++++.+.+.+.+...++..
T Consensus 72 --------------------------~k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 72 --------------------------KKRYMLLAITAFASGFIAIPLV-------NNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred --------------------------cchhHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776666665553 3445556666666767677778889
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
++.+|.+| +++|++++++.+...++|+.++|.+++++... +|+..|++.+++.+++++...
T Consensus 119 ~~~~~~~~----~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~--------g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 119 AWFADNLS----STSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ--------SINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHhcC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHH
Confidence 99999997 67899999999999999999999999998752 399999988777666654433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=198.29 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.+| +..+...++...+.+.+.++++.|+++++|+|..+.+.+.++..+...+..+++|+++||+ |
T Consensus 10 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g------------ 74 (400)
T PRK11646 10 LGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-G------------ 74 (400)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-C------------
Confidence 445 5566778888999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.+++.+. ++.+.+++++++.+++.+...|+.
T Consensus 75 ---------------------------~k~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 75 ---------------------------AKPMIVTGMLMRAAGFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988888777777766553 345777888888899888888889
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
.++..|.+| +++|+++.++.+...++|..++|.+++++. .. +|+..|++.+...+++.+.
T Consensus 121 ~~~~~~~~~----~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-------g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 121 TALVIKLIR----PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-------DFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------hHHHHHHHHHHHHHHHHHH
Confidence 999999997 778999999999999999999999999998 42 4999999877665554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=183.95 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
+....++.+++|++..+.+++.+++.+...++.+++|+++||+ |
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g----------------------------------- 57 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-G----------------------------------- 57 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-C-----------------------------------
Confidence 3445567889999999999999999999999999999999999 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...++..++.+|.+| +++|++..++
T Consensus 58 ----~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~ 122 (399)
T TIGR00893 58 ----ARKTLAVFIVIWGVFTGLQAFA-------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFP----ASERATAVSI 122 (399)
T ss_pred ----cceeeHHHHHHHHHHHHHHHHH-------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCC----HHHHHHHHHH
Confidence 8888888888777777776664 356888899999999999999999999999997 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.+...++|+.++|.+++++.+.. +|++.|++.++..++..+....
T Consensus 123 ~~~~~~~g~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 123 FNSAQGLGGIIGGPLVGWILIHF-------SWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHhchHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988774 4999999877666555444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-18 Score=188.68 Aligned_cols=175 Identities=16% Similarity=0.077 Sum_probs=144.0
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
..+.+...+...+....+.......+|.|+.+++|+|..+.+++.+++.+...++.+++|+++||+ |
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g------------ 79 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-G------------ 79 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-C------------
Confidence 346788888888888888888889999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-cccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-TLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
||+++..+.+++.++.+++.+.... .....+...+++.+++.|+|.+...++
T Consensus 80 ---------------------------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 132 (399)
T PRK05122 80 ---------------------------PKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTG 132 (399)
T ss_pred ---------------------------CcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcch
Confidence 9999998888777666555443211 111123467888899999999998898
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLM 462 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~ 462 (850)
..++..|.+| +++|+++.+++..+.++|..++|.+++++.+.. +|+..+++..++.
T Consensus 133 ~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------g~~~~~~~~~~~~ 188 (399)
T PRK05122 133 SILWGIGRVG----ALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-------GLAGLGLLIMLLA 188 (399)
T ss_pred HHHHHHhhcC----hhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-------cHHHHHHHHHHHH
Confidence 8999999997 778899999988888999999999999998764 3888777655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-18 Score=192.83 Aligned_cols=178 Identities=13% Similarity=0.135 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
.+.++.+....++..+..+.+.+++|.|.. ++|++..+.+++.+.+.++..++.+++|+++||+ |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g------------- 73 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-G------------- 73 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 356788888888888888888889988885 6999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||++++.+.++..++.+++.+. ++...+++++++.|+|.++..|...
T Consensus 74 --------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~ 120 (471)
T PRK10504 74 --------------------------VRNIFFTAIVLFTLGSLFCALS-------GTLNELLLARVLQGVGGAMMVPVGR 120 (471)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8888888877777776665543 4557788899999999999999999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
++..|.+| +++|+++.++.+...++|+.++|.+++++.+.. +|++.|++.....+++.+......+
T Consensus 121 ~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-------gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 121 LTVMKIVP----REQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-------SWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHcC----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999997 788999999999999999999999999998873 4999999877655555544444333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-18 Score=188.50 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
|..++.+....+......|...+.+| .+.+++|++..+.+++.+.+.+...++.+++|+++||+ |
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------- 72 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-E------------- 72 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-------------
Confidence 33445544444555555554444444 56678999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.++..++.+++.+. ++...+++++++.|++.+...+...
T Consensus 73 --------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~ 119 (390)
T PRK03545 73 --------------------------RRKLLIGLFVLFIASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITA 119 (390)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988888887777664 5668888899999998888888899
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
++.+|++| +++|+++.+++..+.++|..++|.+++++.+.. +|++.|++.+++.++..+.
T Consensus 120 ~~i~~~~~----~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-------gw~~~f~~~~~~~~l~~~~ 179 (390)
T PRK03545 120 SLAIRVAP----AGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-------GWRTTFLAIGGGALITLLL 179 (390)
T ss_pred HHHHHhCC----hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-------cHHHHHHHHHHHHHHHHHH
Confidence 99999997 778999999999999999999999999988764 4999999987766555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=192.79 Aligned_cols=392 Identities=14% Similarity=0.086 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
+...+...++..++.......+|.|. ++++.+..+.+++.+...+...++.+++|+++||+ |
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g---------------- 80 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-D---------------- 80 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-C----------------
Confidence 33444455666666666666677776 45788999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+++..+.++..++.+...+..+ ...++...+++.+++.+++.+...++..++.
T Consensus 81 -----------------------~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 135 (417)
T PRK10489 81 -----------------------RKKLILLARGTCGLGFIGLALNAF--LPEPSLLAIYLLGLWDGFFGSLGVTALLAAT 135 (417)
T ss_pred -----------------------CceEEEehHHHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777777766655555544433211 1123456677778888888887778888999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccccC
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRC 480 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~~ 480 (850)
.|.+| +++|+++.++.+...++|..++|.+++++.+.. +|++.|++.+++.+++.+..+.. +..+
T Consensus 136 ~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~l-~~~~--- 200 (417)
T PRK10489 136 PALVG----RENLMQAGAITMLTVRLGSVISPALGGLLIAAG-------GVAWNYGLAAAGTFITLLPLLRL-PALP--- 200 (417)
T ss_pred hhccC----HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHhC-CCCC---
Confidence 99997 678899999999999999999999999998763 38888888776665554433222 2111
Q ss_pred CchhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1432 481 PKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAA 560 (850)
Q Consensus 481 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~ 560 (850)
+++.. + +.+ ..+..+ .. +.+...+.+...+. ...+ +.........++.+..
T Consensus 201 ~~~~~--------------~--~~~---~~~~~~----~~--~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~p~~~~ 251 (417)
T PRK10489 201 PPPQP--------------R--EHP---LRSLLA----GF--RFLLASPVVGGIAL---LGGL-LTMASAVRVLYPALAD 251 (417)
T ss_pred CCCcc--------------c--ccc---hHHHHH----HH--HHHHcChHHHHHHH---HHHH-HHHHHhHHHhhHHHHH
Confidence 11000 0 000 000000 00 00001111111111 1111 1111111111122221
Q ss_pred hhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q psy1432 561 RTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPES 640 (850)
Q Consensus 561 ~~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~ 640 (850)
.. .+.. ....+.+.....+..++...+.+ .+.++. ++.+.+..+.++.+++++.++...
T Consensus 252 ~~-~g~~--~~~~g~~~~~~~~g~~ig~~~~~-----~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~---------- 310 (417)
T PRK10489 252 EV-WQMG--AAQIGLLYAAVPLGAALGALTSG-----WLAHSA---RPGLLMLLSTLGSFLAVGLFGLMP---------- 310 (417)
T ss_pred hc-cCCC--hhHhHHHHHHHHHHHHHHHHHHH-----Hhhhcc---CcchHHHHHHHHHHHHHHHHHccc----------
Confidence 10 0100 01122222223333333322222 222221 223445666666666655443210
Q ss_pred ccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhh
Q psy1432 641 TTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSK 720 (850)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (850)
T Consensus 311 -------------------------------------------------------------------------------- 310 (417)
T PRK10489 311 -------------------------------------------------------------------------------- 310 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH
Q psy1432 721 LLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYV-GQAGE 799 (850)
Q Consensus 721 ~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~-~~~~~ 799 (850)
+++.++...++.+++.+...+...++..+.+|++.||.++|+++....+|..+++.+.+...+. +....
T Consensus 311 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~ 380 (417)
T PRK10489 311 ----------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS 380 (417)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence 2233444556777888877788889999999999999999999999999999999988877664 34556
Q ss_pred HHHHHHHHHHHHHHHhhheeeeccccccccc
Q psy1432 800 FFLYACLIFLDMLLFYRITKRYKFVKMQLDE 830 (850)
Q Consensus 800 f~l~a~l~~l~~l~~~~~~~~~~~~~~~~~~ 830 (850)
+...++..++..++.+...++.|+++.|+.|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 381 ASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 6667777777777777777777776665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-18 Score=188.80 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=140.2
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+|..+...+...+++.+..+..-...|. +.+++|++..+.+++.++..++..++.+++|+++||+ |
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------ 78 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-G------------ 78 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 5556666777777777766666555554 4577999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++.+++.|++.+...+..
T Consensus 79 ---------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~ 124 (406)
T PRK11551 79 ---------------------------RKRILIVSVALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNL 124 (406)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 8899888887776666655543 455778888999999999888999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.++.+|.+| +++|+++.++.+...++|+.++|.+++.+.+.. +|+..|++.+++.++..+
T Consensus 125 ~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 125 IALTSEAVG----PRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-------AWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------CHHHHHHHHHHHHHHHHH
Confidence 999999997 788999999999999999999999988877653 499999887765554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-18 Score=188.51 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
.+.++......++...+.......+|.|+.+++|+|..+.+++.+++.+...++.+++|+++||+ |
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g------------- 79 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-G------------- 79 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-c-------------
Confidence 35667777777777777778888899999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhh-hhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGA-VPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a-~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.+...++.+...+.. .+....++...+++++++.|+|.+...+..
T Consensus 80 --------------------------~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 133 (392)
T PRK12382 80 --------------------------AKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGA 133 (392)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776555544332221 111112356778899999999999888888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
.++..|.+| +++|+++++++..+.++|..++|.+++++.+.. +|+..+.+..+
T Consensus 134 ~~~~~~~~~----~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~~~~~~~ 186 (392)
T PRK12382 134 LTWGLGLVG----PKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-------GFAALALTTMV 186 (392)
T ss_pred HHHHHhhCC----ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHH
Confidence 899999997 678999999999888999999999999988763 38876655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-18 Score=186.82 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeec
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKD-----ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 313 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~-----a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~ 313 (850)
|.+.......++...++.....++|.|++ ++|++..+ .+++.+++.+...++.+++|+++||+ |
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g--------- 82 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-G--------- 82 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-C---------
Confidence 45666667778888888888889999985 58988655 37888899999999999999999998 9
Q ss_pred ccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchh
Q psy1432 314 FDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIK 393 (850)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~ 393 (850)
||+++..+.++..++.+++.+. ++...+++++++.+++.+ ..
T Consensus 83 ------------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~-~~ 124 (408)
T PRK09874 83 ------------------------------RKIMLLRSALGMGIVMVLMGLA-------QNIWQFLILRALLGLLGG-FV 124 (408)
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHhhh-hH
Confidence 8888888877766666655543 345777888888887754 45
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+...++..+.+| +++|+++.+.++...++|+.++|.+++++.+.. +|+..|.+.+++.+++.+...
T Consensus 125 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~ 190 (408)
T PRK09874 125 PNANALIATQVP----RNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-------GLRPVFFITASVLFLCFLVTL 190 (408)
T ss_pred HhHHHHHHHhcC----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHH
Confidence 777788899997 778899999999999999999999999998763 499999888776665554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=189.89 Aligned_cols=142 Identities=19% Similarity=0.316 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHH
Q psy1432 273 SEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 352 (850)
Q Consensus 273 s~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~ 352 (850)
+..+.+++.+++.++..++.+++|+++||+ | ||+++.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-g---------------------------------------rr~~~~~~~ 108 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-G---------------------------------------RKKSLLIIA 108 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-h---------------------------------------hHHHHHHHH
Confidence 389999999999999999999999999999 9 899998888
Q ss_pred HHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy1432 353 FVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGM 432 (850)
Q Consensus 353 i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap 432 (850)
++..++.++..+... ..+.+.+++++.+.|+|.+...+...++++|.+| +++|+.+.++++...++|+.+++
T Consensus 109 ~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 109 LLFVIGAILMGLAAF----ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP----KALRGALTSLYQLAITFGILVAY 180 (481)
T ss_pred HHHHHHHHHHHHhcc----ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC----hhhhhhhhhHHHHHHHHHHHHHH
Confidence 888877777655321 1233578889999999999999999999999997 77899999999999999999999
Q ss_pred HHH---HHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 433 IFI---PMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 433 ~I~---~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
.++ ..+... .+|++.|.+.+...++.++..
T Consensus 181 ~~~~~~~~~~~~-------~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 181 GFGSGKVSLNNT-------LGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHhhcCCCC-------ccHHHHHHHHHHHHHHHHHHH
Confidence 988 443333 359999998665555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=191.69 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhH
Q psy1432 271 KFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRV 350 (850)
Q Consensus 271 Gls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili 350 (850)
|.+..+.+++.+++.++..++++++|+++||+ | ||++++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-G---------------------------------------rr~~~~~ 90 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------------------------------RRDSLKI 90 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------------------------------cHHHHHH
Confidence 89999999999999999999999999999999 9 9999999
Q ss_pred HHHHHHHHHHHHHHhhhhcc-----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHH
Q psy1432 351 FSFVYVLGNILLCLGAVPTL-----ALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIIN 425 (850)
Q Consensus 351 ~~i~~~lg~ll~al~a~p~l-----~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~ 425 (850)
+.+++.++.++.+++.+... +...+..+++++++.|++.|+..+...++++|.+| +++|+.+++....+..
T Consensus 91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~----~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP----AHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC----hhhhhHHHHHHHHHHH
Confidence 98888888777665422111 11224567899999999999999999999999998 7789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 426 IGGFLGMIFIPMIRKSIP-CYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 426 iGg~iap~I~~~I~~~~g-~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+|+.+++.++..+....+ ..-+..+||+.|++.++..++.++.
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 999999887766543210 0001135999999877666555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-17 Score=182.08 Aligned_cols=173 Identities=15% Similarity=0.124 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 239 KSIYLILTIEFCERFSFC---GLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y---~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
+..+..+...+++...++ .+...++. +.+++|++..+.++..+++.++..++.+++|+++||+ |
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g----------- 76 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-G----------- 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------
Confidence 444444444444444333 33334443 4578999999999999999999999999999999999 9
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
||+++..+.++..++.++..+. ++...+++.+.+.|++.+...+.
T Consensus 77 ----------------------------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~ 121 (406)
T PRK15402 77 ----------------------------RRPVMLAGVAFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAV 121 (406)
T ss_pred ----------------------------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHH
Confidence 8889888887777776665553 35577888888889888888888
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
..+.+.|.+| +++|.+..++.+....+|+.++|.+++++.+.. +|++.|++.+++.+++.+...
T Consensus 122 ~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 122 GYAAIQESFE----EADAIKITALMANVALLAPLLGPLVGAALIHVL-------PWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CccHHHHHHHHHHHHHHHHHH
Confidence 8999999997 677888888888888899999999999988763 499999887776665554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-18 Score=175.64 Aligned_cols=346 Identities=19% Similarity=0.232 Sum_probs=245.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhh
Q psy1432 243 LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHI 322 (850)
Q Consensus 243 ~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~ 322 (850)
......++.....+.....++.|.. ++|.+..+.+++.++..+...++.+++|+++||+ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g------------------ 62 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-G------------------ 62 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C------------------
Confidence 3445667777788888888888874 5799999999999999999999999999999999 9
Q ss_pred hhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHh
Q psy1432 323 FYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGE 402 (850)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae 402 (850)
||+.+..+.++..++.++..+. ++...+++++.+.+++.+...+...++..|
T Consensus 63 ---------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 114 (352)
T cd06174 63 ---------------------RRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAAALIAE 114 (352)
T ss_pred ---------------------CchhhHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcccccccHhHHHHHHH
Confidence 8888888888777777776654 456788889999999999999999999999
Q ss_pred hcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccccCCc
Q psy1432 403 QFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPK 482 (850)
Q Consensus 403 ~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~~~~ 482 (850)
.+| +++|++.+++.+...++|+.++|.+++++.+.. +|+..+++.++..+++.+......
T Consensus 115 ~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------- 174 (352)
T cd06174 115 WFP----PKERGRALGLFSAGFGLGALLGPLLGGLLAESL-------GWRWLFLILAILGLLLALLLLFLL--------- 174 (352)
T ss_pred hCC----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 997 678999999999999999999999999998873 499999888776666554433221
Q ss_pred hhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy1432 483 KNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAART 562 (850)
Q Consensus 483 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~ 562 (850)
|++...... ..+.+............+....
T Consensus 175 ----------------------------------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 205 (352)
T cd06174 175 ----------------------------------------------RLLLLLALA---FFLLSFGYYGLLTYLPLYLQEV 205 (352)
T ss_pred ----------------------------------------------HHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHh
Confidence 111111111 1111112111111112111111
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchh-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCc
Q psy1432 563 DSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLR-RMVCGGCIAGFAFISAGYVELNLQENPPEST 641 (850)
Q Consensus 563 ~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~-~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~ 641 (850)
. +. .....+.+.....+..++..++.... .+|.++ ++ .+.++..+.+++.+......
T Consensus 206 ~-~~--~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~----------- 263 (352)
T cd06174 206 L-GL--SAAEAGLLLSLFGLGGILGALLGGLL----SDRLGR----RRLLLLIGLLLAALGLLLLALAP----------- 263 (352)
T ss_pred c-CC--CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh----hhHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 0 00 01122333444445555455544432 244443 23 46677777777666554321
Q ss_pred cccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhh
Q psy1432 642 TKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKL 721 (850)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (850)
T Consensus 264 -------------------------------------------------------------------------------- 263 (352)
T cd06174 264 -------------------------------------------------------------------------------- 263 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH
Q psy1432 722 LILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYV-GQAGEF 800 (850)
Q Consensus 722 ~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~-~~~~~f 800 (850)
+.+.+....++.+++.+...+...++..+..|++.|++.+|+.+....+|..+++.+.+...+. +....|
T Consensus 264 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~ 334 (352)
T cd06174 264 ---------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVF 334 (352)
T ss_pred ---------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH
Confidence 1345666778899999999999999999999999999999999999999999999998877653 345667
Q ss_pred HHHHHHHHHHHHHHhh
Q psy1432 801 FLYACLIFLDMLLFYR 816 (850)
Q Consensus 801 ~l~a~l~~l~~l~~~~ 816 (850)
.+.+++.++..+++++
T Consensus 335 ~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 335 LILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHhee
Confidence 7777777777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-18 Score=178.15 Aligned_cols=172 Identities=13% Similarity=0.036 Sum_probs=138.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhh
Q psy1432 245 LTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFY 324 (850)
Q Consensus 245 ~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~ 324 (850)
+...+...++.......+|.|.. +++.+..+.+++.++..+...++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g-------------------- 62 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-D-------------------- 62 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-c--------------------
Confidence 34455555555556667777775 5899999999999999999999999999999999 9
Q ss_pred hhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhc
Q psy1432 325 ALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQF 404 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~f 404 (850)
||+++..+.++..++.++..+.. .....+.+.+++++++.+++.+...++..++.+|.+
T Consensus 63 -------------------~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 121 (365)
T TIGR00900 63 -------------------RKKVMIGADLIRAVLVAVLPFVA--LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLV 121 (365)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88898888877666666555432 112235678888999999999999999999999999
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 405 CVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 405 p~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
| +++|+++.++.+....+|..++|.+++++.+.. +|+..|++.++..+++.+..+
T Consensus 122 ~----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 122 P----EEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-------GIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred C----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHH
Confidence 7 678999999999999999999999999998874 499999887766655544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-17 Score=184.76 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++..+...++..+..+.+..++|.+. +++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g---------------- 86 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-N---------------- 86 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-C----------------
Confidence 33344444444444445555666665 56999999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+++.++.++..++.++..+. ++...+++.+++.+++.|...++..+++
T Consensus 87 -----------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~ 136 (434)
T PRK11663 87 -----------------------ARYFMGIGLIATGIINILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLL 136 (434)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 8889988888777777766654 4456777778888888888888999999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
+|++| +++|++++++++.+.++|+.++|.+++++.+.. +|++.|++.++..++..+
T Consensus 137 ~~~~~----~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 137 TAWYS----RTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-------GWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cHHHHHHHHHHHHHHHHH
Confidence 99997 788999999999999999999999999998763 499999987765544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-17 Score=175.32 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=135.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.++.+...+...++.....+... +...++.+++|++..+.+++.++..++..++.+++|+++||+ |
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g------------ 80 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-G------------ 80 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-h------------
Confidence 34455555555555544444443 444556678999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+..
T Consensus 81 ---------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~ 126 (398)
T TIGR00895 81 ---------------------------RKRVLLWSILLFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNL 126 (398)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhH
Confidence 8888888887766666665543 345777888889999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
.++.+|.+| +++|+++.++++....+|+.++|.+++++.+.. +|+..|++.+++.++..+.
T Consensus 127 ~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 127 NALVSEYAP----KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-------GWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHcC----HHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-------cceeehhhhhhHHHHHHHH
Confidence 999999997 788999999999999999999999999998774 3898888875444444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-17 Score=174.17 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++.+....+....+.......+|. +.+++|.+..+.+++.+++.++..++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g-------------- 68 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-G-------------- 68 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C--------------
Confidence 44444444445555555555555554 5678999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+...+
T Consensus 69 -------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~ 116 (385)
T TIGR00710 69 -------------------------RRPVLLLGLFIFALSSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQA 116 (385)
T ss_pred -------------------------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHH
Confidence 8889888888777777766554 45577888899999999988899999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+..|.+| +++|++..++.+....+|+.++|.+++++.+.. +|+..|++.++..+++.+..+.
T Consensus 117 ~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 117 LVRDIYP----GEELSRIYSILMPVLALAPAVAPLLGGYILVWL-------SWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 778999999999999999999999999998874 4999998877666655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=179.52 Aligned_cols=165 Identities=24% Similarity=0.417 Sum_probs=138.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhh
Q psy1432 246 TIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYA 325 (850)
Q Consensus 246 ~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~ 325 (850)
...++..+........++.++.+++|.+..+.+++.+++.+...++.+++|+++||+ |
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g--------------------- 60 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-G--------------------- 60 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------------
Confidence 344555666666666777688899999999999999999999999999999999998 9
Q ss_pred hcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q psy1432 326 LCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405 (850)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp 405 (850)
||+++..+.++..++.++..++ ++.+.+++++++.|++.+...++..++++|.+|
T Consensus 61 ------------------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~ 115 (352)
T PF07690_consen 61 ------------------RRRVLIIGLLLFALGSLLLAFA-------SNFWLLLIARFLLGIGSGFFSPASNALIADWFP 115 (352)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------CeeeEeehhhhhhhHHHHhhhh-------hhHHHHhhhccccccccccccccccccccccch
Confidence 8889988888777775554442 344688899999999999999999999999997
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 406 ~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+++|++..+..+...++|..++|.+++++.+.. +|+..|++.+++.+++.+.
T Consensus 116 ----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 116 ----PEERGRAFGILSAGFSLGSILGPLLGGFLISYF-------GWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ----TCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-------HHCCHHHHHHHHHHHHHHH
T ss_pred ----hhhhhhccccccchhhhhhhcccchhhhhhhcc-------ccccccccccchhhhhhhh
Confidence 678999999999999999999999999998663 4999999988877777653
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-16 Score=176.02 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=141.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.|+.+..+....++.....|.....+|.+ .+++|++..+.++..+++.+...++.++.|+++||+ |
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g------------ 83 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-D------------ 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C------------
Confidence 56665555555555555666555566654 568999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.+++.+. ++.+.+++.+++.|++.+...+..
T Consensus 84 ---------------------------rr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~ 129 (394)
T PRK10213 84 ---------------------------RRYVVILFAVLLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMS 129 (394)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHH
Confidence 8999999998888777766554 466889999999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
.++++|.+| +++|+.+.+....+.++|..++|.+++++.+.. +|++.|++.+++.+++.
T Consensus 130 ~~~i~~~~~----~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-------gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 130 ASLTMRLVP----PRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-------GWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHcC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHH
Confidence 999999997 788999999999999999999999999998874 49999998776554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=188.66 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=121.1
Q ss_pred HHHhhCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccc
Q psy1432 266 LRDVLKFS---EKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFY 342 (850)
Q Consensus 266 Lt~~LGls---~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (850)
+.+++|++ ..+.+++.+++.++..++.+++|+++||+ |
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-G-------------------------------------- 155 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-G-------------------------------------- 155 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-c--------------------------------------
Confidence 45678998 89999999999999999999999999998 9
Q ss_pred cceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 343 GRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 343 ~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
||++++++.++..++.++.++. ++...+++++++.|++.++..++..++++|.+| +++|+.+.+++..
T Consensus 156 -rr~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~----~~~r~~~~~~~~~ 223 (505)
T TIGR00898 156 -RKKVLLLSTLVTAVSGVLTAFS-------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLP----KKQRAIVGTLIQV 223 (505)
T ss_pred -chHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHhhccchHHHHHHHhheecC----hhhhHHHHHHHHH
Confidence 8999988888777777776654 566888999999999999999999999999998 7788999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 423 IINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
+..+|..++|.++..+. .|++.|++.++..++..+..
T Consensus 224 ~~~~g~~~~~~~~~~~~----------~wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 224 FFSLGLVLLPLVAYFIP----------DWRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHH
Confidence 88899988888875543 28999988877666555444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-17 Score=175.10 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=124.3
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
..+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G----------------------------------- 66 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-G----------------------------------- 66 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-C-----------------------------------
Confidence 4456778889999999999999999999999999999999998 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
||+++..+.++..++.++.++. ++...+++++.+.|++.+...++......+.+| ++|+++.++
T Consensus 67 ----~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 130 (377)
T TIGR00890 67 ----PRAVAMLGGILYGLGFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-----DKRGLASGI 130 (377)
T ss_pred ----ccchhHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-----cccHHHHHH
Confidence 8999999988888888777765 456778888888899988887788888888884 358999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
...+.++|..+++.+.+.+.+.. +|++.|++.+++.++..+..+
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 131 IIGGYGLGSFILSPLITSVINLE-------GVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHhcchhHhHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHH
Confidence 99888898887666666665542 499999988876665554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-16 Score=172.61 Aligned_cols=173 Identities=14% Similarity=0.188 Sum_probs=143.9
Q ss_pred cChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 236 ~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
++|+.+.......++..+..+......+ .+.+++|++..+.+++.+++.+...++.+++|+++||+ |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g----------- 75 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-G----------- 75 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------
Confidence 3667777788888888887777665555 56788999999999999999999999999999999999 9
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.++..+.
T Consensus 76 ----------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~ 120 (405)
T TIGR00891 76 ----------------------------RRLPMVTSIVLFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGS 120 (405)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHH
Confidence 8889888888777777666553 45677888999999999999999
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lva 465 (850)
..++..|.+| +++|+++.++.+....+|..+++.+++.+.+..+ .+|+..|.+.++..++.
T Consensus 121 ~~~~i~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 121 SAAYVIESWP----KHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-----DGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHhCC----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ccHHHHHHHHHHHHHHH
Confidence 9999999997 6789999999999999999999999998887632 24999988765544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-16 Score=170.43 Aligned_cols=168 Identities=18% Similarity=0.147 Sum_probs=125.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhh
Q psy1432 246 TIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYA 325 (850)
Q Consensus 246 ~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~ 325 (850)
+..++...+.......++.|+.+++|.|..+.+++.+++.+...+..++.|+++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g--------------------- 61 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-G--------------------- 61 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C---------------------
Confidence 345667777788888999999999999999999999999999999999999999999 9
Q ss_pred hcccccccccccccccccceehhhHH-HHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhc
Q psy1432 326 LCYFVPIIGAILADSFYGRYRTIRVF-SFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQF 404 (850)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~Rr~vili~-~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~f 404 (850)
|||.++.. .+...++.++..+. ++...+++.+.+.+.+.+...|...++..|..
T Consensus 62 ------------------~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~ 116 (375)
T TIGR00899 62 ------------------DRKGLILFCCLLAALACLLFAWN-------RNYFLLLVLGVLLSSFASTANPQLFALAREHA 116 (375)
T ss_pred ------------------CchHHHHHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 77765543 34333444444432 34456666666666666666777788888887
Q ss_pred CCCcccchhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 405 CVPEQRFYLER--FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 405 p~p~~~~~r~s--~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
| +++|.. ..+......++|..++|.+++++.+.. +|+..|++.++..++..+..+.
T Consensus 117 ~----~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 117 D----RTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-------GFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred h----hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 5 333443 356777778999999999999998763 4999999988766655544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-17 Score=184.94 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTM---LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~---L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
|..+.++...++.....|..... ....+.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g----------- 92 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-N----------- 92 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-C-----------
Confidence 44444444444444444443322 24456789999999999999999999999999999999999 9
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
||+++..+.++.+++.++.++.. ....++...+++.+++.|++.+...|+
T Consensus 93 ----------------------------~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~ 142 (467)
T PRK09556 93 ----------------------------TKQFLPFLLILSAICMLGFGASL--GSGSVSLGLMIALWALSGFFQSTGGPC 142 (467)
T ss_pred ----------------------------ccchHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHHhccchH
Confidence 88888888776666655554421 111256688889999999999988899
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
..++++|.+| +++|+++++++..+.++|+.+++.+..++..... + .+|+..|.+.+++.++..+..+
T Consensus 143 ~~~~i~~~~~----~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~--~--~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 143 SYSTITRWTP----RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF--D--GHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHHHHHHHcC----ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc--c--CcchhHHHHHHHHHHHHHHHHH
Confidence 9999999998 7789999999999999999999999887766421 0 1488888887765554443333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-16 Score=179.29 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=117.0
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
....|+.++ |++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g------------------------------------ 91 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N------------------------------------ 91 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-C------------------------------------
Confidence 344577777 99999999999999999999999999999999 9
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHH
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVY 420 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~ 420 (850)
||+++.++.++..++.+++++... ...+...+++.+.+.|++.+...+...+...|++| +++|+++.+++
T Consensus 92 ---~k~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~----~~~r~~~~~~~ 161 (452)
T PRK11273 92 ---PRVFLPAGLILAAAVMLFMGFVPW---ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSVW 161 (452)
T ss_pred ---CchhHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCC----hHHHHHHHHHH
Confidence 888998888877777666554310 11245667777888888888888888888999997 77899999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 421 YFIINIGGFL-GMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 421 ~~~~~iGg~i-ap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
+.+.++|+.+ +|++...+... .+|+++|++.+++.++..+
T Consensus 162 ~~~~~~g~~~~~~l~~~~~~~~-------~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 162 NCAHNVGGGLPPLLFLLGMAWF-------NDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHH
Confidence 9999988754 55543333322 2499999987766555433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-17 Score=187.07 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=119.1
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccccc
Q psy1432 264 LYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYG 343 (850)
Q Consensus 264 ~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (850)
..+.+++|++..+++++.+.+.+...++.+++|+++||+ |
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g--------------------------------------- 82 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-G--------------------------------------- 82 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-C---------------------------------------
Confidence 344578999999999999999999999999999999998 9
Q ss_pred ceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHH-HHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLL-GLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 344 Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~llii-alil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
||++++.+.++..++.+++++. ++...+++ .+++.|++.+...+...++..+.++ ++|+++.++.+.
T Consensus 83 ~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-----~~r~~a~g~~~~ 150 (455)
T TIGR00892 83 CRPVVIAGGLLASLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-----RRRPLANGLAMA 150 (455)
T ss_pred chHHHHhhHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-----hhHHHHHHHHHh
Confidence 8888888887777777766554 23344443 3467788877665666788889884 468999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 423 IINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
+..+|+.++|.+++++.+.. +|+++|++.+++.+++++..++.
T Consensus 151 ~~~~g~~~~~~l~~~l~~~~-------gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 151 GSPVFLSTLAPLNQYLFESF-------GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred cccHHHHHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998874 49999999887776655544333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-17 Score=183.36 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
|..+..++...+....-.-.+.+-+|.. .+++|.+..+.+|+.+.+.++..++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-G------------- 69 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-G------------- 69 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 3445555656666666665566666665 578999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||++++.+.+++.++.+++++. +++..+++++.+.|+|.++..+...
T Consensus 70 --------------------------rk~~l~~~~~~~~~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~ 116 (495)
T PRK14995 70 --------------------------FKRLLMLGGTLFGLASLAAAFS-------PTASWLIATRALLAIGAAMIVPATL 116 (495)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999889888888775 5678899999999999998888888
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
+.+.+.++ ++++|+++.+++....++|..++|.+++++.+.. +||+.|++...+.+++++.....
T Consensus 117 ~~l~~~~~---~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-------gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 117 AGIRATFT---EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-------YWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------ChHHHHHHHHHHHHHHHHHHHHh
Confidence 88888873 2678999999999999999999999999998874 49999998766555554444333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-16 Score=174.69 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=136.5
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.+.......+...+..+.. .++..++.+++|++..+.+++.+++.+...++.+++|+++||+ |
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g------------ 81 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-G------------ 81 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 3455666666666655555544 4455567789999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++++.+.|+|.+...++.
T Consensus 82 ---------------------------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~ 127 (426)
T PRK12307 82 ---------------------------RKPLMMWSIVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACA 127 (426)
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999998888887777664 455788899999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
.++++|.+| +++|+++.+++..+..+|..++|.+.+++.+.. +|++.|++...
T Consensus 128 ~~~~~~~~~----~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-------~w~~~f~i~~~ 180 (426)
T PRK12307 128 STYAVESWP----KHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-------GWRAAFFVGLL 180 (426)
T ss_pred HHHHHHhCC----HhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-------CHHHHHHHHHH
Confidence 999999997 778999999999999999999999988887763 49999987543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-17 Score=183.20 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=130.0
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.++......++..+..+.....+ .++.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G------------ 99 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-G------------ 99 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 34455555555555555555444333 466789999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++.++. ++...+++++++.|++.+... +.
T Consensus 100 ---------------------------~r~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~r~l~G~~~~~~~-~~ 144 (476)
T PLN00028 100 ---------------------------PRYGSAFLLMLTAPAVFCMSLV-------SSATGFIAVRFFIGFSLATFV-SC 144 (476)
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHhhH-HH
Confidence 8888888887777776666554 344667778888888877653 44
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYG--GESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g--~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
..+++|.+| +++|+.+.++.+...++|+++++.+.+.+.......+ +..+||+.|++.+++.++..+..++
T Consensus 145 ~~~i~~~~~----~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 145 QYWMSTMFN----GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHhcC----hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 567899998 7889999999888888888888777766543211000 0125999999988766655444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-16 Score=173.19 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++..+...++..++.......++.. ..++|.+..+.+++.+.+.+...++.+++|+++||+ |
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-g--------------- 66 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-P--------------- 66 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-C---------------
Confidence 34555556666666554444444443 678999999999999999999999999999999999 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+++.++.++..++.+++.+. .+ .++.+++.|++.++..|...++
T Consensus 67 ------------------------rr~vl~~~~~~~~~~~~~~~~~-------~~---~~~~r~l~G~~~a~~~pa~~a~ 112 (393)
T PRK11195 67 ------------------------KGRVMFIANGIKLLGCLLMLFG-------IH---PLLAYGLVGIGAAAYSPAKYGI 112 (393)
T ss_pred ------------------------CchhhHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777665543 11 2567788999999999999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lva 465 (850)
++|.+| +++|+++.++.....++|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus 113 i~~~~~----~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--------~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 113 LTELLP----GEKLVKANGWMEGSTIAAILLGTVLGGALADP--------HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 999998 78899999999999999999999999999875 2676776655444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-17 Score=180.52 Aligned_cols=172 Identities=13% Similarity=0.172 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYH 321 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~ 321 (850)
..++...+...+........+| ++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g----------------- 65 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-G----------------- 65 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-C-----------------
Confidence 3344444555555444444454 45578999999999999999999999999999999999 9
Q ss_pred hhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy1432 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCG 401 (850)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~a 401 (850)
||+++.++.+++.++.+++.+. ++...+++++++.|++.+...++..+++.
T Consensus 66 ----------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~ 116 (485)
T TIGR00711 66 ----------------------TRRLFLISTFAFTLGSLLCGVA-------PNLELMIIFRVIQGFGGGPLIPLSFSTLL 116 (485)
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8999999988888887776654 46688889999999999999999999999
Q ss_pred hhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 402 EQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 402 e~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
|.+| +++|+++.+++.....+|+.++|.+++++.+.. +|++.|++.+.+.+++++.....
T Consensus 117 ~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------~w~~~f~~~~~~~~~~~~~~~~~ 176 (485)
T TIGR00711 117 NIYP----PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-------HWRWIFLINVPIGIIVVVVAFFI 176 (485)
T ss_pred HHCC----HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-------CceehhhhhhHHHHHHHHHHHHH
Confidence 9997 778999999999999999999999999998763 49999998776655555444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=176.23 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
......+.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-g----------------------------------- 54 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-F----------------------------------- 54 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-----------------------------------
Confidence 3444556778999999999999999999999999999999999 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
||+++..+.+....+ .+.... .+++..+++++++.|+|.+.. .+..+..+|.+| +++|+++.++
T Consensus 55 ----rr~~~~~~~~~~~~~-~~~~~~------~~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~----~~~r~~a~~~ 118 (368)
T TIGR00903 55 ----KRWFLFGSLATFAAA-AGRLLD------PFNYEWLLACQLLAALGQPFL-LNAFAPAASQIR----EERRDLVISL 118 (368)
T ss_pred ----chHHHHHHHHHHHHH-HHHHHH------hccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcC----HHHHHHHHHH
Confidence 777655443322222 211111 135688999999999998864 555666799997 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.+.+..+|+.+++.+++++.+.. +||..|++.+++.++..+..+.
T Consensus 119 ~~~~~~lG~~l~~~~~~~l~~~~-------gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 119 LSFAMYLGIIFALAAGLKIYTAG-------GLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 4999999877665555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=181.37 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=131.2
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeee
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDV----LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVF 312 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~----LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~ 312 (850)
+.+.+..+....+...+-...+....+..-.+. .+.+..+.+++.++..++..++.+++|+++||+ |
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-G-------- 84 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-G-------- 84 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--------
Confidence 334444455555555554444443344332211 245566778999999999999999999999999 9
Q ss_pred cccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhch
Q psy1432 313 SFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGI 392 (850)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~ 392 (850)
||+++.++.+++.++.++.++... .....+...+++++++.|++.|+.
T Consensus 85 -------------------------------rr~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 85 -------------------------------RKRVYGMELIIMIIATVASGLSPG-SSPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHHHccC-cccchHHHHHHHHHHHHHHHHhhh
Confidence 999998888888887776665311 000012567899999999999999
Q ss_pred hhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C---------------CCCccchHHHH
Q psy1432 393 KPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPC-Y---------------GGESCYALGFV 456 (850)
Q Consensus 393 ~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~-~---------------g~~~~w~~~f~ 456 (850)
.+...++.+|.+| ++.|+++.++.+....+|..+++.+..++...... . ....+||..|.
T Consensus 133 ~~~~~~~~~e~~p----~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~ 208 (502)
T TIGR00887 133 YPLSAIITSEFAT----KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIG 208 (502)
T ss_pred hHHHHHHHHHhcC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHH
Confidence 9999999999998 88999999999999999999999888766532110 0 00125999998
Q ss_pred HHHHHHHHHHH
Q psy1432 457 VPAVLMVLALV 467 (850)
Q Consensus 457 I~a~l~lvalv 467 (850)
+.++..++.++
T Consensus 209 ~~~ip~~i~~~ 219 (502)
T TIGR00887 209 FGAVPALLALY 219 (502)
T ss_pred HHHHHHHHHHH
Confidence 77665554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-16 Score=170.49 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+.|.++..++..+..........+.+|.|+. ++|+|..+++++.+++.++..++.+++|+++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g------------ 69 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-G------------ 69 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H------------
Confidence 4577899999999999999989999999987 5899999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.++..+..
T Consensus 70 ---------------------------~k~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~ 115 (381)
T PRK03633 70 ---------------------------FNRSYYLASLIFAAGCAGLGLM-------VGFWSWLAWRFVAGIGCAMIWVVV 115 (381)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988888877777766654 456788889999999999888887
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
.+...+..+ +++|++.++.+....++|..++|.+.+.+...
T Consensus 116 ~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 116 ESALMCSGT----SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777788886 56799999999999999999999999988664
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-17 Score=179.52 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++..+++..+.++++.|+.+++|++..+.+.+.+++.+...++++++|+++||+ |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g-------------- 74 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-G-------------- 74 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4566666677778887888899999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHH-hhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCL-GAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al-~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++.++..+..++...... ...+..........+++.+..+.+.....+...
T Consensus 75 -------------------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (420)
T PRK09528 75 -------------------------LKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIE 129 (420)
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhh
Confidence 888876655443333221111 101100000001111122222222222223333
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
++. +.+ .+.++..++......++|..++|.+++++.+. +|+..|++.+++.+++++.+++.
T Consensus 130 ~~~-~~~-----~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--------~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 130 AYI-ERV-----SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--------NPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred hHH-HHH-----HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--------CchHhHHHHHHHHHHHHHHHhcc
Confidence 332 222 23456677777888899999999999998764 38889988776666655554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=165.98 Aligned_cols=171 Identities=12% Similarity=0.121 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.+|.++.+....++...........+|.+ .+++|++..+.+++.+++.+...++.+++|+++||+ |
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g------------ 71 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-G------------ 71 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-C------------
Confidence 45666767666666666666555555554 578999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.+...++.++..+. ++...+++.+++.|++.+...+..
T Consensus 72 ---------------------------rr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~ 117 (394)
T PRK11652 72 ---------------------------RRPVILVGMSIFILGTLVALFA-------HSLTVLIAASAIQGLGTGVGGVMA 117 (394)
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHH
Confidence 8888888887777766665543 455778888899998888777777
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
.++..|.++ +++++...+.+..+..++..++|.+++++.+.. +|+..|++.++..++..
T Consensus 118 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 118 RTLPRDLYE----GTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-------GWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHHHHHHHH
Confidence 888889886 677888889988888999999999999988763 49999998766554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-16 Score=169.06 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....+.....+|. +.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g-------------- 66 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-S-------------- 66 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-c--------------
Confidence 45666666777777777777766665 4578999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.+++.+. ++.+.+++++++.|++.+...+...+
T Consensus 67 -------------------------~r~~~~~~~~~~~~~~~l~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~ 114 (382)
T PRK10091 67 -------------------------LKHILLFLVALCVIGNAMFTLS-------SSYLMLAIGRLVSGFPHGAFFGVGAI 114 (382)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999998888888777664 45688889999999999888888888
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
+..|.+| +++|++..+.+..+..+|+.++|.+++++.+.. +|++.|++.++..++..+..
T Consensus 115 ~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 115 VLSKIIK----PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-------SWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHhCC----hHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-------cHHHHHHHHHHHHHHHHHHH
Confidence 9999997 677889999988888999999999999988763 49999998877655554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-16 Score=171.22 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC---CCHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcCCccceeeeecc
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLK---FSEKDATVLY---HIFYALCYFVPIIGAILADSFYGRYRTIRVFSF 314 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LG---ls~~~a~~i~---~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~ 314 (850)
+.......+++.+-... ..++..++.++++ .+..+.+.+. ...+++..++.+++|+++||+ |
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-G---------- 91 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-G---------- 91 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------
Confidence 33343445555555544 5566678888874 5555444433 444445558889999999999 9
Q ss_pred cchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhh-hhcccCChHHHHHHHHHHHHHHhhchh
Q psy1432 315 DATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGA-VPTLALPTIKTTLLGLIFIGIGTGGIK 393 (850)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a-~p~l~~~~~~lliialil~glG~g~~~ 393 (850)
||+++..+.+++.++.+++++.. ...........+++.|++.|+|.|+..
T Consensus 92 -----------------------------rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 92 -----------------------------RKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred -----------------------------cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 99999999998888888877641 110001122468889999999999999
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCccchHHHHHHHHHHHHH
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYG-GESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g-~~~~w~~~f~I~a~l~lva 465 (850)
|...++++|.+| +++|+.+.+..+...+.|..+++.+...+....+... ...+||..|++.++..++.
T Consensus 143 ~~~~~~i~e~~p----~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 143 GTSATYMSEVAV----EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hhHHHHHHHhCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999999999997 6778888888888888888888877655543210000 0135999999877655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-16 Score=171.53 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccc
Q psy1432 254 SFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333 (850)
Q Consensus 254 ~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (850)
..+.+...+| -+.+++|+|..+.+++.+++.++..++.+++|+++||+ |
T Consensus 24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G----------------------------- 72 (393)
T PRK09705 24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-S----------------------------- 72 (393)
T ss_pred hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-C-----------------------------
Confidence 3344444454 45678999999999999999999999999999999999 9
Q ss_pred ccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchh
Q psy1432 334 GAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYL 413 (850)
Q Consensus 334 ~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r 413 (850)
||+++..+.+++.++.+++++. +++..+++++++.|+|.+...++..++..+.+| ++|
T Consensus 73 ----------~r~~l~~~~~l~~~~~~~~~~a-------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-----~~~ 130 (393)
T PRK09705 73 ----------ERRSVAISLLLIAVGALMRELY-------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-----QRT 130 (393)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHC-------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-----ccc
Confidence 9999999999999999988875 566788899999999999988888999999984 458
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q psy1432 414 ERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 414 ~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lva 465 (850)
+.+.+.+..+.++|+.+++.+++++.+..+ +|+..+.+.++..+++
T Consensus 131 ~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~------~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 131 PLVMGLWSAALMGGGGLGAAITPWLVQHSE------TWYQTLAWWALPAVVA 176 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887631 4988876655444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-16 Score=173.42 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=136.0
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.+..+....+...+...... .+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g------------ 83 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-G------------ 83 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 45666666666665555555444 444567788999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.++..++.
T Consensus 84 ---------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~ 129 (496)
T PRK03893 84 ---------------------------RRLAMVISIVLFSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSS 129 (496)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777776664 455778888999999999888999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
.++..|.+| +++|+.+.+.++.+.++|+.++|.+.+++.+.. +|++.|++.++
T Consensus 130 ~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~w~~~f~~~~~ 182 (496)
T PRK03893 130 ATYVIESWP----KHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-------GWRALFFIGIL 182 (496)
T ss_pred HHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CHHHHHHHHHH
Confidence 999999998 788999999999999999999999999988763 49999887543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=177.10 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=123.3
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehh
Q psy1432 269 VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTI 348 (850)
Q Consensus 269 ~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vi 348 (850)
++|++..+.+.+.+++.++..++.+++|+++||+ | ||+++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g---------------------------------------~r~~l 109 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-V---------------------------------------FKWSI 109 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-C---------------------------------------cchhh
Confidence 6889999999999999999999999999999999 9 88888
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHH
Q psy1432 349 RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGG 428 (850)
Q Consensus 349 li~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg 428 (850)
..+.++..++.++..+... .+...+++.+++.|++.++..+...++.+|.+| +++|+++.++.+.+.++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~ 180 (465)
T TIGR00894 110 GIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAP----PKERSRLLGMSTSGFQLGT 180 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCC----HHHHHHHHHHHHHHHHHHH
Confidence 8888777776665543211 223668888999999999999999999999998 7889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 429 FLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 429 ~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.++|.+++++.+... +|+..|++.++..++..+.++.
T Consensus 181 ~i~~~l~~~l~~~~~------gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 181 FIFLPISGWLCESWG------GWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHHHHHHHHHhccC------CCCeehhhhhHHHHHHHHHHHH
Confidence 999999999987620 4999999987766555444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-15 Score=168.15 Aligned_cols=173 Identities=8% Similarity=0.007 Sum_probs=140.3
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
++|..+.++...++.....+.+-..+|.. .+++|+|..+.+++.+++.++..++.+++|+++||+ |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g------------ 70 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPI-AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-P------------ 70 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h------------
Confidence 56778877777777777766666666664 568999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+. ++...+++.+.+.|++.+...++.
T Consensus 71 ---------------------------~r~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~ 116 (394)
T PRK03699 71 ---------------------------LKRQLIFGFALMILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIG 116 (394)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccch
Confidence 8888888887777777766653 455778888899999888888888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.+.+.|.+| +++|+...+..+....+|+.++|.+.+++.... .+|+..|.+.+++.++.++
T Consensus 117 ~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 117 TFLITHVYE----GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS------IEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred hHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHHH
Confidence 999999997 677888888888888899999999998876531 2499999987766555444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-16 Score=171.94 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=142.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+|+.++.++...+++......+ .....++.+++|++..+.+++.+++.++..++.+++|+|+||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G------------ 71 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-G------------ 71 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-C------------
Confidence 4455555555555444444433 3445588999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.+++.++.++.++. ++...+++++++.|++.++..|..
T Consensus 72 ---------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~ 117 (412)
T TIGR02332 72 ---------------------------ARRWIAGIMVLWGIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGI 117 (412)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999999988888888877764 455788899999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
.++.+|.+| +++|++..++++....+|+.++|.+++++....+ ..+..+||+.|++.++..++..+...
T Consensus 118 ~~~~~~~~~----~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 118 LLYLTFWFP----AYFRARANALFMIAMPVTMALGLILSGYILALDG-LMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCccchhHHHHHHHHHHHHHHHHHh
Confidence 999999998 7889999999999999999999999999875311 00012599999997766555444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-15 Score=163.41 Aligned_cols=161 Identities=13% Similarity=0.153 Sum_probs=128.8
Q ss_pred HHhhhHHHHHHHHHH--HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcc
Q psy1432 251 ERFSFCGLRTMLSLY--LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328 (850)
Q Consensus 251 ~~~~~y~~~t~L~~Y--Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~ 328 (850)
...+++....++|.+ +.+++|.+..+.+++.+++.+...++.+++|+++||+ |
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g------------------------ 69 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-G------------------------ 69 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-C------------------------
Confidence 344444444555544 6788999999999999999999999999999999999 9
Q ss_pred cccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCc
Q psy1432 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPE 408 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~ 408 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+...++..|.+|
T Consensus 70 ---------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--- 124 (401)
T PRK11043 70 ---------------RKPVLLAGLSLFALGSLGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYP--- 124 (401)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---
Confidence 8888888887777776666553 455777888888888887777777889999997
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 409 QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 409 ~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
++++++.++..+...++|+.++|.+++++.+.. +|+..|++.++..++..+..
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 125 -AQKANRVFATIMPLVALSPALAPLLGAWLLNHF-------GWQAIFATLFAITLLLILPT 177 (401)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHH
Confidence 667888888888888999999999999998874 49999988776665554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-15 Score=164.19 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccc
Q psy1432 257 GLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAI 336 (850)
Q Consensus 257 ~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (850)
.....+|.+. +++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g-------------------------------- 54 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-G-------------------------------- 54 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-C--------------------------------
Confidence 3445667676 46999999999999999999999999999999998 9
Q ss_pred cccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhH
Q psy1432 337 LADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERF 416 (850)
Q Consensus 337 ~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~ 416 (850)
||+++..+.++..++.+++.+. ++...+++.+.+.|++.+...+...++..|.+| +++|++.
T Consensus 55 -------~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~ 116 (377)
T PRK11102 55 -------RKPVILGGTLVFALAAVACALA-------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFP----KEEFSRM 116 (377)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHH
Confidence 8889888888777777766654 345777888888999988888999999999997 7789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 417 FSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 417 ~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
.++.+....+|+.++|.+++++.+.. +|+..|++.++..++..+..
T Consensus 117 ~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 117 MSFVTLVMTIAPLLAPIIGGWLLVWF-------SWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-------ChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874 39999988776665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=168.45 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=126.0
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccc
Q psy1432 262 LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSF 341 (850)
Q Consensus 262 L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (850)
...++.+++|++..+.+++.+++.+...++.+++|+++||+ |
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------------------------------- 58 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-N------------------------------------- 58 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-C-------------------------------------
Confidence 44577889999999999999999999999999999999999 9
Q ss_pred ccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH
Q psy1432 342 YGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY 421 (850)
Q Consensus 342 ~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~ 421 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+...++.+|.+| +++|+++.++.+
T Consensus 59 --~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~ 125 (379)
T TIGR00881 59 --PRVFLPIGLILCAIVNLFFGFS-------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFS----RSERGTWVSFWN 125 (379)
T ss_pred --CeehhHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcC----HhhheeeEeehh
Confidence 8999999888877777776664 355778888999999999999999999999997 778999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 422 FIINIGGFLGM-IFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 422 ~~~~iGg~iap-~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
...++|+.++| ++++.+.... +|+..|++.+++.++..+..+
T Consensus 126 ~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 126 CSHNVGGGLLPPLVLFGIAELY-------SWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred ccchhHHHHHHHHHHHHHHhcC-------CchhHHHHHHHHHHHHHHHHh
Confidence 99999999999 5666665552 499999887766555444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-15 Score=165.81 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=125.4
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccce
Q psy1432 266 LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRY 345 (850)
Q Consensus 266 Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr 345 (850)
+.+++|.+..+.++..+++.++..++++++|+++||+ | ||
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G---------------------------------------rr 81 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-G---------------------------------------RR 81 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-C---------------------------------------ch
Confidence 5678999999999999999999999999999999999 9 89
Q ss_pred ehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHH
Q psy1432 346 RTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIIN 425 (850)
Q Consensus 346 ~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~ 425 (850)
+++..+.+++.++.+++.+. ++...+++++++.|++.+...+...+...|.+| ++++++..++.+...+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~a-------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 150 (413)
T PRK15403 82 PVLITGALIFTLACAATLFT-------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFG----QTKGIKLMAIITSIVL 150 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHH
Confidence 99998888888877777664 566888999999999887666777788999997 7788999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 426 IGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 426 iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+|..++|.+++++.+.. +|++.|++.++..+++++..+
T Consensus 151 ~~~~~g~~lg~~l~~~~-------gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 151 VAPIIGPLSGAALMHFV-------HWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763 499999988776666554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-15 Score=171.88 Aligned_cols=181 Identities=15% Similarity=0.090 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHH----HHH--HHHHHHHHHHHHHHHHHHhhhhcCCccceeee
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKD----ATV--LYHIFYALCYFVPIIGAILADSFYGRYRTIRV 311 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~----a~~--i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~ 311 (850)
++.+.......+++.+-+.. ..+...++.+.++.+... .+. +.++..++..++.+++|+++||+ |
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G------- 85 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-G------- 85 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-------
Confidence 35566666677777765554 445556777887643321 111 24666778889999999999999 9
Q ss_pred ecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-cccCChHHHHHHHHHHHHHHhh
Q psy1432 312 FSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-TLALPTIKTTLLGLIFIGIGTG 390 (850)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-~l~~~~~~lliialil~glG~g 390 (850)
||+++.++.+++.++.+++++.... .++.-...++++.+++.|+|.|
T Consensus 86 --------------------------------rr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g 133 (490)
T PRK10642 86 --------------------------------RQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVG 133 (490)
T ss_pred --------------------------------cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 9999999999999988888775110 0000001247889999999999
Q ss_pred chhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCccchHHHHHHHHHHH
Q psy1432 391 GIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYG-GESCYALGFVVPAVLMV 463 (850)
Q Consensus 391 ~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g-~~~~w~~~f~I~a~l~l 463 (850)
+..++..++++|.+| +++|+...++...+..+|..+++.+...+....+... ...+||+.|++.+...+
T Consensus 134 ~~~~~~~~~~~e~~p----~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 134 GEYTGASIFVAEYSP----DRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred hhHHHHHHHHHHhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999999999998 6788999888887778888887776655543211000 01349999998664433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-16 Score=169.07 Aligned_cols=178 Identities=10% Similarity=0.108 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+|......++...++..+.++++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-g-------------- 66 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-G-------------- 66 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4577777788888888888899999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHH-hhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCL-GAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al-~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.++.+.+...++...... ...+..........+++.++.+++.+...+...
T Consensus 67 -------------------------rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 121 (396)
T TIGR00882 67 -------------------------LKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIE 121 (396)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence 888877665544333322211 111100001112334455566677776667766
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
++..|.-+ +++..++......++|..++|.+++.+.+. +|+..|++.+++.++..+..+
T Consensus 122 ~~~~~~~~------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--------~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 122 AYIEKVSR------NSNFEYGKARMFGCVGWALCASIAGILFSI--------DPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHhhh------hcccccchhhhhcccHHHHHHHHHhhhhcc--------CchHHHHHHHHHHHHHHHHHH
Confidence 66655432 233456677777899999999999987653 499999988776666554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-15 Score=165.36 Aligned_cols=366 Identities=11% Similarity=0.004 Sum_probs=220.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhh
Q psy1432 244 ILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIF 323 (850)
Q Consensus 244 i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~ 323 (850)
.....++...++-....++|.|++ ++|+|..+.+++.+++.+...++++++|.++||+ ||++.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~--------------- 71 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIII--------------- 71 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHH---------------
Confidence 344455555555666788899995 6899999999999999999999999999999998 82110
Q ss_pred hhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhh
Q psy1432 324 YALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403 (850)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~ 403 (850)
.++.+..+..+..+ ..... .++.+.+++.+++.+.+.+...|...++..+
T Consensus 72 --------------------~~~~~~~~~~l~~~--~~~~~-------~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~- 121 (382)
T TIGR00902 72 --------------------ALRLLALASAIFAA--AFSAG-------AHNAWLLFIAIGLFALFFSAGMPIGDALANT- 121 (382)
T ss_pred --------------------HHHHHHHHHHHHHH--HHHHh-------hhhHHHHHHHHHHHHHHHccchhHHHHHHHH-
Confidence 11222222211111 11111 1345777788888888877777877777644
Q ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccccCCch
Q psy1432 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPKK 483 (850)
Q Consensus 404 fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~~~~~ 483 (850)
. .++|++.++......++|..++|.+++++.+.. +|+..|++.+++.++.++ .+...+..+ +++
T Consensus 122 ~-----~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-------g~~~~f~~~~~~~~~~~~-~~~~~~~~~---~~~ 185 (382)
T TIGR00902 122 W-----QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-------DEQNILAILTAGLAFMLI-GFLIKPTIP---PKD 185 (382)
T ss_pred H-----HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-------ChhHHHHHHHHHHHHHHH-HHHcCCCCC---CCc
Confidence 3 356788899999999999999999999999884 399988876554333222 222222111 110
Q ss_pred hhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q psy1432 484 NIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTD 563 (850)
Q Consensus 484 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~ 563 (850)
+. + +.+ .... .+..++-..|+++.. .+...+.+....+..+..+.+...
T Consensus 186 ~~--------------~--~~~---~~~~-------~~~~~~l~~~~~~~~---l~~~~l~~~~~~~~~~~~~~~l~~-- 234 (382)
T TIGR00902 186 AI--------------P--EDE---SQGD-------SAFIALLKNPMNLRF---LAAVCLIQGAHAAYYGFSAIYWQA-- 234 (382)
T ss_pred cc--------------c--ccc---cccc-------hhHHHHHcChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 00 0 000 0000 000011111222222 122222333333333333322221
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q psy1432 564 SQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTK 643 (850)
Q Consensus 564 ~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~ 643 (850)
.+......+....+..+..++..++.+ |..+|.++.+.+.+|.++.++.++.++..+
T Consensus 235 --~g~s~~~~g~l~~~~~~~~i~~~~~~~--------~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------------- 291 (382)
T TIGR00902 235 --AGISASATGLLWGIGVLAEIIIFAFSN--------KLFQNCSARDLLLISAIACVGRWAIIGAIE------------- 291 (382)
T ss_pred --CCCCHhHHHHHHHHHHHHHHHHHHHhH--------HHHhhCCHHHHHHHHHHHHHHHHHHHHhHh-------------
Confidence 111111122223333333333333333 333333556667888888888877665431
Q ss_pred cccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhc
Q psy1432 644 LECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLI 723 (850)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (850)
T Consensus 292 -------------------------------------------------------------------------------- 291 (382)
T TIGR00902 292 -------------------------------------------------------------------------------- 291 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHH-HHHHHHHHHHHHHHHHhhccchhHHHHH
Q psy1432 724 LSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQ-LSVALGNLIIICIEQLRGYVGQAGEFFL 802 (850)
Q Consensus 724 ~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~-~~~~lG~~i~~~i~~~~~~~~~~~~f~l 802 (850)
+.+.++..-++.++..++..+....++.+. |++.|+.++++++ +..++|..+++.+.+...+..+...|++
T Consensus 292 -------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~ 363 (382)
T TIGR00902 292 -------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVF 363 (382)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 334455555888999999999999999988 9999999999986 5678899999999887777655677888
Q ss_pred HHHHHHHHHHHH
Q psy1432 803 YACLIFLDMLLF 814 (850)
Q Consensus 803 ~a~l~~l~~l~~ 814 (850)
.+++.++++++.
T Consensus 364 ~~~~~~~~~~~~ 375 (382)
T TIGR00902 364 MAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 888887766553
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-15 Score=164.48 Aligned_cols=158 Identities=12% Similarity=0.095 Sum_probs=128.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.||++.......++...+.+....+++.|+ +++|++..+++++.+.+.+...++.+++|+++||+ |
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g------------ 76 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-G------------ 76 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-C------------
Confidence 567888888888888888888888899988 56899999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.+++.+... ..++...+++.+++.|+|.+...+..
T Consensus 77 ---------------------------~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~i~G~g~~~~~~~~ 126 (402)
T TIGR00897 77 ---------------------------PLKTMMIGLLLWCVGHAAFIVFGL---GHANYPLILLFYGIRGLGYPLFAYSF 126 (402)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHHHHHHHcchHHHHhHH
Confidence 888988888877766554432111 11244666778888888888777777
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhc
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGG-FLGMIFIPMIRKSI 442 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg-~iap~I~~~I~~~~ 442 (850)
.+...+.+| +++|+++.++++...++|. .++|.+++++.+..
T Consensus 127 ~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~ 169 (402)
T TIGR00897 127 LVWVVYNTK----QDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF 169 (402)
T ss_pred HHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 788889987 6789999999999999986 57899998887764
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-16 Score=191.70 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEK--DATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~--~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+.+...+...++.++...+....+..++...++.+.. ..+++.+++.+...++.+++|+++||+ |
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-g------------ 75 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-S------------ 75 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-c------------
Confidence 4455555566666665555555555666666676543 468888999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||++++++.++..++.++..+.... ++++.+++++++.|++.+...++.
T Consensus 76 ---------------------------rk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 76 ---------------------------KNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHhhchHH
Confidence 8888888776555555444432211 345788889999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
.++++|.+| +++|+++++++..+.++|..++|.+++++...
T Consensus 125 ~~~i~~~~~----~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 125 YGIIPELVG----KENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhhhHHhcC----cccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 67899999999999999999999999998764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-15 Score=163.44 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCY-FVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~-~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
..+..+...++...+...+...++.|+.+++|++..+.+++.+......+ ++++++|+ +||+ |
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g-------------- 79 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-G-------------- 79 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-c--------------
Confidence 45556666888888888888999999999999999999999876655444 45555666 9999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehh-hHHHHHHHHHHHHHHHhhhhcccCChHHHHH-HHHHHHHHHhhchhhHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTI-RVFSFVYVLGNILLCLGAVPTLALPTIKTTL-LGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vi-li~~i~~~lg~ll~al~a~p~l~~~~~~lli-ialil~glG~g~~~~~~ 396 (850)
|||.+ ..+.++..++.++..+. ++...++ +++.+.+.+ +...|..
T Consensus 80 -------------------------~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~-~~~~~~~ 126 (393)
T PRK15011 80 -------------------------DRKSLIVFCCLLGVLACTLFAWN-------RNYFVLLFVGVFLSSFG-STANPQM 126 (393)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH-HhhHHHH
Confidence 66654 44444434444444432 2333333 333333443 3456777
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.++..|..+ ++++..+...+..+.+.++|..++|.+++++.+.. +|+..|++.+++.++..+....
T Consensus 127 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-------gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 127 FALAREHAD--KTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-------SFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHhh--hccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHHHh
Confidence 777777664 11122234456778888999999999999998874 3999999887766555544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-15 Score=164.09 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--CCCHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhcCCcccee
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVL--KFSEKDATVLY-----HIFYALCYFVPIIGAILADSFYGRYRTI 309 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~L--Gls~~~a~~i~-----~i~~i~~~~~~~lgG~LADr~lGr~k~l 309 (850)
++|.++..+...+++.+-...+....+.+..+++ +.+... +++. .+..+...++.++.|+++||+ |
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-G----- 92 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-G----- 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-c-----
Confidence 3466667777777777766655555556666655 677764 3332 233344556778889999999 9
Q ss_pred eeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-cccCChHHHHHHHHHHHHHH
Q psy1432 310 RVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-TLALPTIKTTLLGLIFIGIG 388 (850)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-~l~~~~~~lliialil~glG 388 (850)
||+++..+.+++.++.+++++.... .........+++.|.+.|++
T Consensus 93 ----------------------------------rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~ 138 (438)
T PRK09952 93 ----------------------------------RKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFA 138 (438)
T ss_pred ----------------------------------cHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998888888877764110 00000012577889999999
Q ss_pred hhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCccchHHHHHHHHHHH
Q psy1432 389 TGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYG-GESCYALGFVVPAVLMV 463 (850)
Q Consensus 389 ~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g-~~~~w~~~f~I~a~l~l 463 (850)
.|+..+...++..|.+| +++|+...+....+..+|..++..+..++....+..+ +..+||..|++.++..+
T Consensus 139 ~g~~~~~~~~~~~e~~p----~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 139 VGGEWGGAALLAVESAP----KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred hcccHHHHHHHHHHhCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 99999999999999998 6678888888888888888888777766653321000 01359999998776543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-14 Score=157.50 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYH 321 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~ 321 (850)
-..+...+....+.....+.+|.+ .+++|.+..+.+++.+++.+...++.++.|+++||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g----------------- 66 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-G----------------- 66 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-C-----------------
Confidence 334444455555555555556655 467999999999999999999999999999999999 9
Q ss_pred hhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy1432 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCG 401 (850)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~a 401 (850)
||+.+..+.++..++.++.... ++...+++++.+.|++.+...+...+++.
T Consensus 67 ----------------------~r~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~ 117 (392)
T PRK10473 67 ----------------------RKPVAIPGAALFIIASLLCSLA-------ETSSLFLAGRFLQGIGAGCCYVVAFAILR 117 (392)
T ss_pred ----------------------ChHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888888887777776665543 34567778888889988888888999999
Q ss_pred hhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 402 EQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 402 e~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
|.+| +++|+++.++.+...++|+.++|.+++++.+.. +|+..|++.++..+++.+.
T Consensus 118 ~~~~----~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-------g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 118 DTLD----DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-------PWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------ChHHHHHHHHHHHHHHHHH
Confidence 9997 788999999999999999999999998887663 4999998877665555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-15 Score=164.35 Aligned_cols=179 Identities=18% Similarity=0.180 Sum_probs=157.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.|..++......|+-...=|.....+| -+.+++|.|..++|...+++..+..++.|+-..+.||+ .
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~------------ 76 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-E------------ 76 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c------------
Confidence 445677777777777777766665554 45678999999999999999999999999999999999 7
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||++++....++.++.++++++ +++..++++|++.++.+|.+.+..
T Consensus 77 ---------------------------Rr~lLl~~l~lFi~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~ 122 (394)
T COG2814 77 ---------------------------RRRLLLGLLALFIVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIA 122 (394)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 788999999999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
.+..+++.| +++|+++.+..+.+.+++..+|..++.+|.+..| ||..|.+.+.+.+++++..+...|
T Consensus 123 ~~~a~~lvp----p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 123 AALAARLVP----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHcC----ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998 7889999999999999999999999999999854 999999988887777777666655
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-15 Score=168.43 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=120.6
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccc
Q psy1432 263 SLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFY 342 (850)
Q Consensus 263 ~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (850)
..++.+ +|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g-------------------------------------- 89 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-N-------------------------------------- 89 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-C--------------------------------------
Confidence 345655 599999999999999999999999999999999 9
Q ss_pred cceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 343 GRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 343 ~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
||+.+..+.++..++.++..+. +.. ..+...+++.+++.+++.+...+.....+.|.+| +++|++++++++.
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~----~~~rg~~~~~~~~ 161 (438)
T TIGR00712 90 -PRVFLPAGLILSAAVMLLMGFV--PWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWS----QSERGTIVSIWNC 161 (438)
T ss_pred -CceehHHHHHHHHHHHHHHhcc--ccc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcC----cccchhHHHHHHH
Confidence 8888888777766666654432 111 1234566777888889888888888899999997 7789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 423 IINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+.++|++++|.+.+++.... .+|+.+|++.++..+++.+..+.
T Consensus 162 ~~~~g~~~~~~l~~~~~~~~------~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 162 AHNIGGGIPPLLVLLGMAWF------NDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHhHhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877654431 14999999987766655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-14 Score=167.82 Aligned_cols=381 Identities=12% Similarity=0.102 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+.......+..+++.++...-++-|++ ++.=|....+++..+..+-..+..+++|.++||+ .
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-d--------------- 73 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-D--------------- 73 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c---------------
Confidence 4444555566666666666555554544 5677889999999999999999999999999999 8
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||++++.+-++..+..+++++.. ..+..+.+.+++..++.+++.+...|...++
T Consensus 74 ------------------------rrrili~~~~~~~~~~~~L~~l~--~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ 127 (524)
T PF05977_consen 74 ------------------------RRRILILSQLLRALVALLLAVLA--FFGLLSPWLLLILTFLLGIGSAFFNPAWQAI 127 (524)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776555544444322 1223345777777788899999999999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccccccc
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIR 479 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~ 479 (850)
+.|+.| +++...+.++.....|++..+||.++|.+....| -...|.+.++..+++++.+...++..++.
T Consensus 128 ip~lV~----~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-------~~~~f~inalsfl~~i~~l~~~~~~~~~~ 196 (524)
T PF05977_consen 128 IPELVP----KEDLPAANALNSISFNIARIIGPALGGILVAFFG-------AAAAFLINALSFLISILALLRWKPPPPPS 196 (524)
T ss_pred HHHhcc----HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 999998 7889999999999999999999999999988743 66788887776666554444333322211
Q ss_pred CCchhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1432 480 CPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQA 559 (850)
Q Consensus 480 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a 559 (850)
+.+++ .+.+-+...++. +...+.+...+.. ..++..........++..+
T Consensus 197 ~~~~e---~~~~~l~~G~ry-------------------------v~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a 245 (524)
T PF05977_consen 197 SLPRE---RFFSALREGLRY-------------------------VRSSPPLRSVLLR---SFLFNLFASAVWALLPLFA 245 (524)
T ss_pred ccchh---hhhhhHHHHHHH-------------------------HhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHH
Confidence 11111 111111111111 0111122111111 1111111111122233333
Q ss_pred HhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy1432 560 ARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPE 639 (850)
Q Consensus 560 ~~~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~ 639 (850)
.+. + +..+..+..+.. +.-.+.+.+..+.+.++++ .+..+.+..+.++.+++.+.+++..
T Consensus 246 ~~~---l---~~~a~~yGll~a--~~gvGai~Gal~~~~l~~~---~~~~~lv~~~~~~~a~~~~~lal~~--------- 305 (524)
T PF05977_consen 246 RDV---L---GGGASGYGLLLA--AFGVGAILGALLLPRLRRR---LSSRRLVLLASLLFALALLLLALSP--------- 305 (524)
T ss_pred HHH---h---CCcHHHHHHHHH--HHHHHHHHHHHHHHHhhcc---cCcchhhHHHHHHHHHHHHHHhcch---------
Confidence 221 1 111222222211 1222333444444444433 2344455666666666666555321
Q ss_pred CccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhh
Q psy1432 640 STTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFS 719 (850)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (850)
T Consensus 306 -------------------------------------------------------------------------------- 305 (524)
T PF05977_consen 306 -------------------------------------------------------------------------------- 305 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhH
Q psy1432 720 KLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVG-QAG 798 (850)
Q Consensus 720 ~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~-~~~ 798 (850)
+.+..++..++.|++.........+...+..|+++||++++++++....+..+|..+.+...+.. ...
T Consensus 306 -----------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~ 374 (524)
T PF05977_consen 306 -----------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRT 374 (524)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 33455666778888888888889999999999999999999999999999899988888776643 345
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1432 799 EFFLYACLIFLDMLLFYR 816 (850)
Q Consensus 799 ~f~l~a~l~~l~~l~~~~ 816 (850)
.+.+.++.+++..++.+.
T Consensus 375 al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 375 ALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566566656666655544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=162.32 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHH-----HHHHHHHHHHHhhhhcCCccceeeee
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLY-HIFYA-----LCYFVPIIGAILADSFYGRYRTIRVF 312 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~-~i~~i-----~~~~~~~lgG~LADr~lGr~k~l~~~ 312 (850)
+.....+...+++.+-...+ ..+..++.++++.+..+.+... +.... ...++.+++|+++||+ |
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-G-------- 84 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-G-------- 84 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-c--------
Confidence 33444444444444444433 3455577788998887754332 22221 1235678999999999 9
Q ss_pred cccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhh-hcccCChHHHHHHHHHHHHHHhhc
Q psy1432 313 SFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAV-PTLALPTIKTTLLGLIFIGIGTGG 391 (850)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~-p~l~~~~~~lliialil~glG~g~ 391 (850)
||++++.+.+++.++.+++++... ..+.......+++++++.|++.++
T Consensus 85 -------------------------------rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~ 133 (434)
T PRK15075 85 -------------------------------RRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGV 133 (434)
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999988888887776411 000000012467889999999999
Q ss_pred hhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHH
Q psy1432 392 IKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCY-GGESCYALGFVVPA 459 (850)
Q Consensus 392 ~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~-g~~~~w~~~f~I~a 459 (850)
..++..++.+|.+| +++|++..+++....++|..+++.+++.+....... ....+||..|++..
T Consensus 134 ~~~~~~~~~~e~~p----~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 134 ELGGVSVYLAEIAT----PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred cHHHHHHHHHhhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 88888999999998 778999999988888888888888887764321100 00135999998754
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-15 Score=163.58 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=125.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcc
Q psy1432 249 FCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328 (850)
Q Consensus 249 ~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~ 328 (850)
+..+.....+.++++.|+++++|++..+++++.++..+...+..|+.|+++||. +++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-~~r---------------------- 65 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRT-RTR---------------------- 65 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecC-CCC----------------------
Confidence 445566666778899999999999999999999999999999999999999996 421
Q ss_pred cccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccC-ChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q psy1432 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLAL-PTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVP 407 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~-~~~~lliialil~glG~g~~~~~~~al~ae~fp~p 407 (850)
+.+||+.++.+.+...++.+++... |.... .....+++..++.+++.+....+..++.+|+.+
T Consensus 66 ------------~Grrr~~i~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-- 129 (437)
T TIGR00792 66 ------------WGKFRPWLLIGAIPFSIVLVLLFTT--PDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL-- 129 (437)
T ss_pred ------------CCCcchhHHHhHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC--
Confidence 1124556667766666555554432 21111 123444555566677777777778889999874
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 408 EQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 408 ~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+.++|++..++.+...++|+.+++.+.+.+....+......+|+..+.+.+++.++..+.
T Consensus 130 -~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 130 -DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 256788999998888899988888777766654321011135888888777665555443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-15 Score=184.06 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHH-
Q psy1432 275 KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF- 353 (850)
Q Consensus 275 ~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i- 353 (850)
...+++.+++.+...++.+++|+++||+ | ||+++.....
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~---------------------------------------rk~~~~~~~~~ 91 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-D---------------------------------------KAKLAKILKFA 91 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-c---------------------------------------HHHHHHHHHHH
Confidence 4467778888899999999999999999 9 7776533211
Q ss_pred -HHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy1432 354 -VYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGM 432 (850)
Q Consensus 354 -~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap 432 (850)
+...+..+.++. .++++.+++++++.|++.+...|...+++.+++| +++++.+.++...+.++|..+||
T Consensus 92 ~~~~~~~~~~~~~------~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~----~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 92 EIGIAALAIYGFH------LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLN----KDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcC----ccccchhhHHHHHHHHHHHHHHH
Confidence 111111111111 1456888999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccchHHHHHHHHHHHH
Q psy1432 433 IFIPMIRKSIPCYGGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 433 ~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lv 464 (850)
.+++++.... +|++.|.+.++..++
T Consensus 162 ~l~g~l~~~~-------~~~~~~~~~~~~~~~ 186 (1140)
T PRK06814 162 IIGGLATISG-------NFVILVALLMGIAVL 186 (1140)
T ss_pred HHHHHHHhcc-------ccHHHHHHHHHHHHH
Confidence 9999998863 488888444433333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-14 Score=155.79 Aligned_cols=159 Identities=8% Similarity=0.019 Sum_probs=114.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhc
Q psy1432 248 EFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALC 327 (850)
Q Consensus 248 ~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~ 327 (850)
.++..++...+..++|.|++ ++|.|..+.+++.+++.+...++.+++|.++||+ ||++.
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~------------------- 71 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIP------------------- 71 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHH-------------------
Confidence 44555666777788999995 5899999999999999999999999999999999 83210
Q ss_pred ccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q psy1432 328 YFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVP 407 (850)
Q Consensus 328 ~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p 407 (850)
.++.+.++... ..+.... ..++.+.+++.+.+.+++.++..|...++..+..
T Consensus 72 ----------------~~~~~~~~~~~---~~~~~~~------~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--- 123 (382)
T PRK11128 72 ----------------ALRLLALLTLL---FAVAFWF------GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--- 123 (382)
T ss_pred ----------------HHHHHHHHHHH---HHHHHHH------hcccHHHHHHHHHHHHHHHcccccHHHHHHHHHH---
Confidence 02222222211 1111111 1244577777888888888888888888777653
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q psy1432 408 EQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 408 ~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lva 465 (850)
++|++.++......++|..++|.+++++.+..| |+..|++.++..++.
T Consensus 124 ---~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-------~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 124 ---KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-------EQAILWILTAGVASM 171 (382)
T ss_pred ---hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-------hhHHHHHHHHHHHHH
Confidence 346777777888889999999999999998743 999998777544443
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-15 Score=169.65 Aligned_cols=398 Identities=15% Similarity=0.122 Sum_probs=237.2
Q ss_pred HhhC--CCHHHH----HHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccc
Q psy1432 268 DVLK--FSEKDA----TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSF 341 (850)
Q Consensus 268 ~~LG--ls~~~a----~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (850)
+..| ++..+. +.+++++.+++.++..++|+++||+ |
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-G------------------------------------- 88 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-G------------------------------------- 88 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-------------------------------------
Confidence 3445 455443 5567888999999999999999999 9
Q ss_pred ccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH
Q psy1432 342 YGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY 421 (850)
Q Consensus 342 ~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~ 421 (850)
||..+++..++..++.++..+.... +...++++++++.|+..|......+.++.|..| .+.||.......
T Consensus 89 --RK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP----~~~RG~~g~~~~ 158 (485)
T KOG0569|consen 89 --RKNALLLSNLLAVLAALLMGLSKSA----PSFEMLILGRLIVGLACGLSTGLVPMYLTEISP----KNLRGALGTLLQ 158 (485)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCh----hhhccHHHHHHH
Confidence 8888888877766666666554322 455889999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh--ccccccc-CCchhhHHHHHHHHHHhhh
Q psy1432 422 FIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG--KPMYTIR-CPKKNIILQFLKCMFYSLS 498 (850)
Q Consensus 422 ~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~--~~~~~~~-~~~~~~~~~~~~v~~~~~~ 498 (850)
++.++|-.++..++. ..- .|.+..|...+.++.+.+++.++++... +|+|.-. +.+.+ +..+.+.+..
T Consensus 159 ~~~~~g~ll~~~~~l--~~i---lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~---~A~~sl~~y~- 229 (485)
T KOG0569|consen 159 IGVVIGILLGQVLGL--PSL---LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE---EARKALKFYR- 229 (485)
T ss_pred HHHHHHHHHHHHHcc--HHh---cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH---HHHHHHHHHh-
Confidence 999999998866552 112 2333569988888887777666655443 3444322 22222 2222211111
Q ss_pred hcccCCchhhhhhhhhhhhccc-----CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHhhcccccccc
Q psy1432 499 KKLSSSPYQKKAHWLDYAEDEY-----SPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSW---TFQAARTDSQIFGIH 570 (850)
Q Consensus 499 ~~~~~~~~~~~~~~ld~a~~~~-----s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l---~~~a~~~~~~~~~~~ 570 (850)
.+.......+...+..+.++.. +-.++-+.+.+..-+.+ ...+.+.|+.+.. .++....-.+. |+.
T Consensus 230 G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i-----~~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~ 303 (485)
T KOG0569|consen 230 GKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLI-----GIVVSFAQQFSGINAIFFYSTSIFKTA-GFT 303 (485)
T ss_pred CCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHH-----HHHHHHHHHhcCcceeHHHHHHHHHHc-CCC
Confidence 1110011111111111111111 11111111111111111 1111112222211 11111111111 111
Q ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccc
Q psy1432 571 -----ILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLE 645 (850)
Q Consensus 571 -----i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~ 645 (850)
..+..+..++....++...+ .+|.|| +..+..+..++++..+++........
T Consensus 304 ~~~a~~an~~~g~v~~~~t~~~~~l--------id~~gR----RpLll~~~~~~~~~~~~~~~~~~l~~----------- 360 (485)
T KOG0569|consen 304 PEEAQYANLGIGIVNLLSTLVSPFL--------IDRLGR----RPLLLISLSLMAVALLLMSIALFLSN----------- 360 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 11222333333333333222 256654 24466666666666666655432110
Q ss_pred cccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccC
Q psy1432 646 CYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILS 725 (850)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (850)
. .
T Consensus 361 ------------------------------------~------------------------------------------~ 362 (485)
T KOG0569|consen 361 ------------------------------------S------------------------------------------F 362 (485)
T ss_pred ------------------------------------H------------------------------------------h
Confidence 0 0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q psy1432 726 PGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYAC 805 (850)
Q Consensus 726 ~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~ 805 (850)
...+++..++.........+....|..+-+.+|++|++.|..+++...+.+++++++.....+......+...|+++++
T Consensus 363 -~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i 441 (485)
T KOG0569|consen 363 -GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVI 441 (485)
T ss_pred -hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 0011222223333333344556789999999999999999999999999999999999888887776666688999999
Q ss_pred HHHHHHHHHhhheeeeccccccccc
Q psy1432 806 LIFLDMLLFYRITKRYKFVKMQLDE 830 (850)
Q Consensus 806 l~~l~~l~~~~~~~~~~~~~~~~~~ 830 (850)
.+++.++..|+..+|+|+|+..+..
T Consensus 442 ~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 442 PLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred HHHHHHHHHHHhCcccCCCCHHHHH
Confidence 9999999999999999999876633
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=158.33 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++......+......+...+++|.|+.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------- 65 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-G---------------- 65 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-C----------------
Confidence 45566666677777777888888889999999999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCC-hHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALP-TIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~-~~~lliialil~glG~g~~~~~~~al 399 (850)
||+++..+.++..++.+++.+. + +...+++++++.|++.+. .++..++
T Consensus 66 -----------------------~r~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 114 (366)
T TIGR00886 66 -----------------------PRYTTTLSLLLLAIPCLWAGLA-------VQSYSVLLLLRLFIGIAGGS-FASCMPW 114 (366)
T ss_pred -----------------------chHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhchh-hHhHHHH
Confidence 8899988888888877776654 3 557778888888888554 4567889
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC--CCccchHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP-CYG--GESCYALGFVV 457 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g-~~g--~~~~w~~~f~I 457 (850)
++|.+| +++|+...+++....++|..+++.+++.+..... .++ +..+|++.|++
T Consensus 115 ~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 115 ISFFFP----KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHhcC----HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 999997 7789999999988888888888888776655310 000 01258988843
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-15 Score=165.03 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=149.4
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeec
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTM---LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 313 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~---L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~ 313 (850)
+.|--+.++...++.-..+|.++-. ...++.++.|+|..|.+++.+++++...++-.+.|.+|||. +
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-n--------- 92 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-N--------- 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-C---------
Confidence 3344567777778888888888744 45688889999999999999999999999999999999998 8
Q ss_pred ccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchh
Q psy1432 314 FDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIK 393 (850)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~ 393 (850)
.|..+..+.++.++..+++.+. +++..+.+...+-|...|+-.
T Consensus 93 ------------------------------pr~fm~~gLilsai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 93 ------------------------------PRYFMAFGLILSAIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred ------------------------------CceeehHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777665 356777777888899999999
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFI--PMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~--~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
|+.+..++.+|+ ++.||+..++.+..-|+||++.|.++ +++..+. +|+.+|++|+++.++..+..+.
T Consensus 136 pp~~~~i~~Wfs----r~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-------~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 136 PPCARTITHWFS----RKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-------GWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred cHHHHHHHHHcC----ccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 88999999999999999999999999 7777662 5999999999877765555554
Q ss_pred hcc
Q psy1432 472 GKP 474 (850)
Q Consensus 472 ~~~ 474 (850)
..+
T Consensus 205 ~~r 207 (448)
T COG2271 205 LLR 207 (448)
T ss_pred HhC
Confidence 433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-14 Score=155.59 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc-------hhHHHHHHHH
Q psy1432 734 YMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQ-LSVALGNLIIICIEQLRGYVG-------QAGEFFLYAC 805 (850)
Q Consensus 734 ~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~-~~~~lG~~i~~~i~~~~~~~~-------~~~~f~l~a~ 805 (850)
.++...++.+++++...+....++.+.+|++.||+++|+.+ ...++|..+++.+.+...+.. ....|.+.++
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~ 389 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 44555678889999989999999999999999999999997 567889999988887665431 1346777777
Q ss_pred HHHHHHHHHhhheeeec
Q psy1432 806 LIFLDMLLFYRITKRYK 822 (850)
Q Consensus 806 l~~l~~l~~~~~~~~~~ 822 (850)
+.++..++++++.++.+
T Consensus 390 ~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 390 YIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 87888888888777543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-14 Score=164.57 Aligned_cols=389 Identities=14% Similarity=0.158 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHH
Q psy1432 275 KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV 354 (850)
Q Consensus 275 ~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~ 354 (850)
.+.+++.++..+++.++.+++|+++|++ | ||++++++.+.
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-G---------------------------------------Rk~~l~~~~~~ 128 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRI-G---------------------------------------RKKTLLLAVVL 128 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------------------------------------hHHHHHHHHHH
Confidence 3458999999999999999999999999 9 99999999999
Q ss_pred HHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q psy1432 355 YVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIF 434 (850)
Q Consensus 355 ~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I 434 (850)
+.+|.++.+++ ++...+.++|++.|+|.|+...+.+.+.+|..| ++.|+...+..+...++|..++ .+
T Consensus 129 ~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap----~~~RG~l~~~~~l~~~~Gi~~~-~~ 196 (513)
T KOG0254|consen 129 FLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAP----AHIRGTLVSLYQLFITIGILLG-YC 196 (513)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCC----hhhhHHHHHHHHHHHHHHHHHH-HH
Confidence 99999999987 477999999999999999999999999999998 7899999999999999888877 44
Q ss_pred HHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh--cccccccCCchhhHHHHHHHHHHhhhhcccCCchhhhhhh
Q psy1432 435 IPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG--KPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHW 512 (850)
Q Consensus 435 ~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 512 (850)
+++...+.. .+||..+.+..+..++..+.+++. +|++.-+. ....+..+.+......+ ..+...+....
T Consensus 197 ~~~~~~~~~-----~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~---g~~~~a~~~l~~l~g~~-~~~~~~~~~~~ 267 (513)
T KOG0254|consen 197 INYGTSKVY-----AGWRIPLGLALIPAVILALGMLFLPESPRWLIEK---GRLEEAKRSLKRLRGLS-PEDVEVELELL 267 (513)
T ss_pred HhhhhccCC-----ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc---CChHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence 444444321 149987777665555444442221 22222221 11122222222111101 00000000000
Q ss_pred h-hhhhcc--cCc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHhhccccccccchHHHHH
Q psy1432 513 L-DYAEDE--YSP----RLISDMKTVLAILFVFIPLPLFWSLFDQLGS--------SWTFQAARTDSQIFGIHILPDQMQ 577 (850)
Q Consensus 513 l-d~a~~~--~s~----~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s--------~l~~~a~~~~~~~~~~~i~~~~~~ 577 (850)
. +...+. +.. .+... +...+...+..... .+.|... .-.++....... . ........
T Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~----~fqq~tG~~~~~~Y~~~if~~~g~~~~--~-~~~~~~~~ 339 (513)
T KOG0254|consen 268 KIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQ----LFQQLTGINYVFYYSTTIFKSAGLKSD--T-FLASIILG 339 (513)
T ss_pred HHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHH----HHHHHhCCceEEeehHHHHHhcCCCCc--h-HHHHHHHH
Confidence 0 000000 000 00000 11111111111111 1222211 111221111110 0 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccc
Q psy1432 578 VISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEW 657 (850)
Q Consensus 578 vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (850)
+++....++..-+ .||.|+ +..+..|...+++++++++.........+
T Consensus 340 ~v~~~~t~~~~~l--------vd~~gR----r~lll~s~~~m~~~~~~~~~~~~~~~~~~-------------------- 387 (513)
T KOG0254|consen 340 VVNFLGTLVATYL--------VDRFGR----RKLLLFGAAGMSICLVILAVVGVFALYYP-------------------- 387 (513)
T ss_pred HHHHHHHHHHHHH--------HHHhcc----HHHHHHhHHHHHHHHHHHHHHHHHhccCC--------------------
Confidence 3333333333222 245543 35578888888888888876543210000
Q ss_pred ccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHH
Q psy1432 658 SKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVP 737 (850)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 737 (850)
.......+..++.
T Consensus 388 -------------------------------------------------------------------~~~~~~~~~~~~~ 400 (513)
T KOG0254|consen 388 -------------------------------------------------------------------NSSKGAGWLAIVF 400 (513)
T ss_pred -------------------------------------------------------------------CcccchhHHHHHH
Confidence 0001123334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHH-HHh
Q psy1432 738 QYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLIFLDML-LFY 815 (850)
Q Consensus 738 ~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~~l~~l-~~~ 815 (850)
..+..........|..+.+..|.+|.+.|+.+.++....+++.+++............. ...|+++++++.+..+ +++
T Consensus 401 ~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~ 480 (513)
T KOG0254|consen 401 LCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVF 480 (513)
T ss_pred HHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhe
Confidence 44555556667788889999999999999999999999999999988665554444333 5667777777777777 788
Q ss_pred hheeeecccccccccc
Q psy1432 816 RITKRYKFVKMQLDES 831 (850)
Q Consensus 816 ~~~~~~~~~~~~~~~~ 831 (850)
...+|+|++..|+.+.
T Consensus 481 ~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 481 FFVPETKGLTLEEINE 496 (513)
T ss_pred EEcccCCCCcHHHHHH
Confidence 8899999999887665
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-13 Score=147.48 Aligned_cols=134 Identities=19% Similarity=0.158 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh
Q psy1432 289 YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP 368 (850)
Q Consensus 289 ~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p 368 (850)
.++.+++|+++||+ | ||+++..+.++..++.++..+....
T Consensus 49 ~i~~~~~G~l~dr~-g---------------------------------------~r~~l~~~~~~~~~~~~~~~~~~~~ 88 (394)
T TIGR00883 49 PLGAIVFGHFGDRI-G---------------------------------------RKKTLVITLLMMGIGTLLIGLLPSY 88 (394)
T ss_pred hhHHHHhhhhhhhh-h---------------------------------------hHHHHHHHHHHHHHHHHHHhhCCCh
Confidence 45789999999998 9 8999999888888777776654210
Q ss_pred -cccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-
Q psy1432 369 -TLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYG- 446 (850)
Q Consensus 369 -~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g- 446 (850)
.........+++++++.|++.+...+...++++|.+| +++|+...++...+..+|..+++.+++.+....+...
T Consensus 89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~ 164 (394)
T TIGR00883 89 ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP----PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 0000011357788888999999888999999999997 7788999999999889999999988776653211000
Q ss_pred CCccchHHHHHHHHHHHHHH
Q psy1432 447 GESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 447 ~~~~w~~~f~I~a~l~lval 466 (850)
+..+|+..|.+.++..+++.
T Consensus 165 ~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 165 LEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 01359999988766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-12 Score=143.19 Aligned_cols=173 Identities=9% Similarity=0.013 Sum_probs=123.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhh
Q psy1432 245 LTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFY 324 (850)
Q Consensus 245 ~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~ 324 (850)
+...+.+.........-+|.|+++ .|+|..+.+++..+... .+..+++|+++||+ +.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~-~~------------------- 61 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRY-TP------------------- 61 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcc-cc-------------------
Confidence 334555666666677789999985 59999999999777665 68899999999998 30
Q ss_pred hhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhc
Q psy1432 325 ALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQF 404 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~f 404 (850)
|.+.+||+.+..+.++.+++..++.+.. + ..+.+.+++..++.+...+...++..++.+|.+
T Consensus 62 --------------~~~g~rr~~l~~~~~~~~l~~~~l~~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~ 123 (402)
T PRK11902 62 --------------PLLGRRRGWLLLTQVGLAASIAAMAFCP-P---HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL 123 (402)
T ss_pred --------------cCCCcchhHHHHHHHHHHHHHHHHHhcC-c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111244567666665555555444421 1 123344544545556777778889999999999
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 405 CVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 405 p~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
| +++|+++.++...+..+|..+++.+++++.+.. .+|+..|++.+++.+++.+.
T Consensus 124 ~----~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~------~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 124 H----PEERGAGAAVKVLGYRLAMLVSGGLALWLADRV------LGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred C----hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc------cCHHHHHHHHHHHHHHHHHH
Confidence 7 778999999999888999999999998887742 14999999987766554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-13 Score=145.40 Aligned_cols=165 Identities=14% Similarity=0.034 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
.....+.+++|+|.++.++...+ .+...+ .+++|.++||+ +.+ +
T Consensus 9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~-~~~---------------------------------~ 52 (356)
T TIGR00901 9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTV-YLP---------------------------------F 52 (356)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcc-cCC---------------------------------C
Confidence 34444456789999999999755 333333 88999999998 210 0
Q ss_pred cccceehh-hHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 341 FYGRYRTI-RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 341 ~~~Rr~vi-li~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
.||||.+ +.+.++..+..+++.+. .+ ..+...+....++.+++.+...++..++++|++| +++|+.+.++
T Consensus 53 -~Grr~~~l~~~~~~~~~~~~~l~~~-~~---~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~r~~~~~~ 123 (356)
T TIGR00901 53 -FGRRRSWLVLTQVLLLSLLLILSFL-VP---STDLPLLAGLAFLIAFFSATQDIALDAWRLEILS----DEELGYGSTI 123 (356)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHcC-Cc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HhhhchHHHH
Confidence 1166654 45555444443343332 11 1233344444445567777778889999999997 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPC-YGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~-~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
...+.++|..+++.+++++....+. .....+|+..|++.++..+++++..+
T Consensus 124 ~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 124 YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876431 00012399999988877666555433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-12 Score=147.93 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|..+..+...+......+.....+|.|+++ .|.+..+.+.+..+... +++.+++|.++||+ .+.
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~-~~~------------ 75 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRY-TPP------------ 75 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcc-ccc------------
Confidence 346667777777888888888889999865 59999999987444322 46889999999997 311
Q ss_pred hhhhhhhhcccccccccccccccccceeh-hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRT-IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v-ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
++ ||||. +..+.+...++.+.+++. .+ .++...+.+.+++.+++.+...+...
T Consensus 76 ---------------------~~-Grrr~~ll~~~i~~~~~~~~~a~~-~~---~~~l~~l~~~~~l~~~~~a~~~i~~~ 129 (491)
T PRK11010 76 ---------------------FL-GRRRGWLLATQLLLLVAIAAMGFL-EP---GTQLRWLAALAVVIAFCSASQDIVFD 129 (491)
T ss_pred ---------------------CC-CCchHHHHHHHHHHHHHHHHHHHc-CC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 26665 555555444454444442 11 13456677777778888888888899
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
++.+|.+| +++|+++.++...+..+|..+++.+.+++.+.. .+|+..|++.+++.+++.+..
T Consensus 130 a~~~~~~~----~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~------~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 130 AWKTDVLP----AEERGAGAAISVLGYRLAMLVSGGLALWLADRY------LGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHhcC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHHHHHHHHH
Confidence 99999997 678999999999999999999999999988731 149999999887666654443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-13 Score=149.46 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
...++..+...+...+........+|.+ ++++|++..+.+++.+.+.++..++.++.|+++||+ |
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G------------- 89 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S------------- 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence 3455556656666666655555555554 889999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.+++.++.+++..... .++...+++++++.|+|.|...++..
T Consensus 90 --------------------------~r~~l~~g~~~~~~~~~l~~~~~~----a~~~~~ll~~r~l~G~g~g~~~~~~~ 139 (438)
T PRK10133 90 --------------------------YKAGIITGLFLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999988888876532111 25668889999999999999999999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR 439 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~ 439 (850)
++.+|..| ++++....+..+....+|+.++|.+++.+.
T Consensus 140 ~~v~~~~~----~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 140 PFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHhCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998764 455555678888888899999999987765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-13 Score=152.00 Aligned_cols=435 Identities=13% Similarity=0.105 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCccceeeeecccc
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADS----FYGRYRTIRVFSFDA 316 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr----~lGr~k~l~~~~~~~ 316 (850)
+..+....++-.+++-...++++.|+ +.+|++...++.+..+..+...+.+|++|++||| + |
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-G------------ 71 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-G------------ 71 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-C------------
Confidence 45555566666777666677777776 6799999999999999999999999999999996 6 7
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHH-HHHHHHHHHHHHHhhhh--ccc----CC--h--HHHHHHHHHHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVF-SFVYVLGNILLCLGAVP--TLA----LP--T--IKTTLLGLIFI 385 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~-~i~~~lg~ll~al~a~p--~l~----~~--~--~~lliialil~ 385 (850)
|||.++.+ .+...++.+++.+.... .+. .. . ....+++..+.
T Consensus 72 ---------------------------RRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 72 ---------------------------RRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 77776654 44444444444332110 000 00 1 12334444455
Q ss_pred HHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCC----CC--CccchHHHHH
Q psy1432 386 GIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMI--RKSIPCY----GG--ESCYALGFVV 457 (850)
Q Consensus 386 glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I--~~~~g~~----g~--~~~w~~~f~I 457 (850)
.++.....++..|+++|++| +++++++.+.++.....++|+.+++.+++++ .+..+-. .+ ..+.+..|++
T Consensus 125 d~~~n~~~~p~rALiaDl~p--~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i 202 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTG--GDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLI 202 (477)
T ss_pred HHHHHHHHHHHHHhcccccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHH
Confidence 56777788888999999997 4344557889999999999999999998865 2211100 00 1257889999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCchhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhh-hHHHHHHHH
Q psy1432 458 PAVLMVLALVMFVVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISD-MKTVLAILF 536 (850)
Q Consensus 458 ~a~l~lvalv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~-~k~ll~~l~ 536 (850)
.+++++++.+...+..++.+..++.... .+ +.. +. ++.+.....++ . -+.+++ -|.+.+++.
T Consensus 203 ~a~~l~i~~l~t~~~v~E~~~~~~~~~~-~~-----------~~~--~~-~~~~~~~~~~~-i-~~~~~~mP~~m~~l~~ 265 (477)
T TIGR01301 203 DIILLAILTYIALSAVKENPLIGSDDFI-NS-----------EAA--PP-SKHGEEAFFGE-L-FGAFKYLPRPVWILLL 265 (477)
T ss_pred HHHHHHHHHHHHeeeeeccCCCccccch-hh-----------hcc--cc-cccchhhhHHH-H-HHHHHHCCHHHHHHHH
Confidence 8887777666555444433211110000 00 000 00 00000000000 0 000011 122333333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccccccccch-H---H-HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhH
Q psy1432 537 VFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHIL-P---D-QMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRR 611 (850)
Q Consensus 537 v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~~~~~i~-~---~-~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~ 611 (850)
+....-+-|..+..+.+.+.-+...-...-.+-... . + .....+.+... +++..+-++.++.+. +++
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~----~k~ 337 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA----GKR 337 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc----chh
Confidence 333333344444444454433221110000000000 0 1 11111222212 222222222244432 123
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCC
Q psy1432 612 M-VCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGT 690 (850)
Q Consensus 612 m-~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 690 (850)
+ .++.++.+++++...+...... .+ + +..+.
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~------------~~------------------------------~--~~~~~---- 369 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAK------------NS------------------------------R--YYDGD---- 369 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh------------cc------------------------------c--ccccc----
Confidence 3 6777788888888876542000 00 0 00000
Q ss_pred CCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--cHHH
Q psy1432 691 SGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRS--MKTV 768 (850)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~--~rg~ 768 (850)
.... ++.....+..+..+.+.|+.-+......++++.+..|++ -.|.
T Consensus 370 ------------------------------~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 370 ------------------------------GESL-PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred ------------------------------cccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence 0000 011111345666778899999999999999999999954 4599
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHhhheeeec
Q psy1432 769 TIAAWQLSVALGNLIIICIEQLRGY---VGQAGEFFLYACLIFLDMLLFYRITKRYK 822 (850)
Q Consensus 769 ~~gl~~~~~~lG~~i~~~i~~~~~~---~~~~~~f~l~a~l~~l~~l~~~~~~~~~~ 822 (850)
.||+.|++..+...+.....+.... .+..+.+.+-++.++++++..+++.+|.+
T Consensus 419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999988766554221 23466888888888999988888777643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-13 Score=153.12 Aligned_cols=186 Identities=11% Similarity=0.092 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRD-VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~-~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
|+++..... +.-.+..+...+.+...+.+ ++|+|..+.+++.+++.++..+..++.|+++||+ |
T Consensus 34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G------------- 98 (462)
T PRK15034 34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-G------------- 98 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence 555555544 44444444444444555544 7999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
.|+++.++.++..+..++..+.... ..++...+++.+++.|++ ++..++..
T Consensus 99 --------------------------~R~v~~~~~ll~~i~~~~~~~a~~~--~~~s~~~lli~r~l~Gig-g~~f~~~~ 149 (462)
T PRK15034 99 --------------------------GRRWTVFSTAILIIPCVWLGIAVQN--PNTPFGIFIVIALLCGFA-GANFASSM 149 (462)
T ss_pred --------------------------ChHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHHHHH-HHhHHHHH
Confidence 8888888888777777666653110 013567888899999998 66778899
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCC------CCCCccchHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-----KSIPC------YGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~-----~~~g~------~g~~~~w~~~f~I~a~l~lval 466 (850)
..++++|| +++|+++.++....+++|..+++.+++.+. ...|. .|+..+|+.+..+-+.+.+++.
T Consensus 150 ~~vs~wfp----~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~ 225 (462)
T PRK15034 150 GNISFFFP----KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT 225 (462)
T ss_pred HHHHHHCC----HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999998 888999999997666777766665555433 22220 0111236665555555444544
Q ss_pred HHHHHh
Q psy1432 467 VMFVVG 472 (850)
Q Consensus 467 v~~~~~ 472 (850)
+..++.
T Consensus 226 i~~~~~ 231 (462)
T PRK15034 226 IAAWSG 231 (462)
T ss_pred HHHHHh
Confidence 444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-13 Score=145.48 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=115.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccc
Q psy1432 262 LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSF 341 (850)
Q Consensus 262 L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (850)
+...+.+++|++..+++++.+++.++..++.+++|+++||+ |
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g------------------------------------- 63 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-G------------------------------------- 63 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-C-------------------------------------
Confidence 34456679999999999999999999999999999999999 9
Q ss_pred ccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH
Q psy1432 342 YGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY 421 (850)
Q Consensus 342 ~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~ 421 (850)
||+++..+.++..++.+.. .. ++...+++++++.|+|.+...+...+...|.+| ++|+++.+.++
T Consensus 64 --~r~~~~~~~~~~~~~~~~~-~~-------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 128 (355)
T TIGR00896 64 --EERSVAAGLLLIAAGILIR-SA-------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-----QRVGLMTGLYS 128 (355)
T ss_pred --chHHHHHHHHHHHHHHHHH-Hh-------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-----chhhHHHHHHH
Confidence 8888888777655555443 21 344677888889999988877777888888884 46899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH
Q psy1432 422 FIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 422 ~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lv 464 (850)
...++|+.+++.+++.+.+..+ .+|+..|.+.++..++
T Consensus 129 ~~~~~g~~i~~~~~~~l~~~~~-----~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 129 MALMGGAALAAAATVPLAQHSG-----GHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHH
Confidence 9999999999999998876532 2388888766554333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-14 Score=159.54 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=128.9
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceeh
Q psy1432 268 DVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347 (850)
Q Consensus 268 ~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v 347 (850)
..++++..+.+++.+.+..+..++++.+|+++||+ | -|++
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G---------------------------------------~r~v 105 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-G---------------------------------------ARRV 105 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-C---------------------------------------chHH
Confidence 35789999999999999999999999999999999 9 7889
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHH
Q psy1432 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIG 427 (850)
Q Consensus 348 ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iG 427 (850)
+..+.++.+++.++..+.+.. +...+++.|++.|++.|...|+...+.+.+.| ...|+++.+....+..+|
T Consensus 106 ~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P----~~Ers~~~ail~~g~q~g 176 (466)
T KOG2532|consen 106 FFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAP----PNERSTFIAILTAGSQLG 176 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhHHHHhHHHhhhhceeeeECC----HHHHHHHHHHHHHHHHHH
Confidence 988888888877777665432 22467899999999999999999999999998 778999999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 428 GFLGMIFIPMIRKS-IPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 428 g~iap~I~~~I~~~-~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
.++++.++|+|.++ . ||+..||+.++..++..++++...
T Consensus 177 ~v~~mp~sg~lc~s~~-------GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 177 TIITMPVSGLLCESSL-------GWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHHHHHhHHHHhccCC-------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987 3 499999998887776666555543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-13 Score=153.70 Aligned_cols=155 Identities=13% Similarity=0.020 Sum_probs=109.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
..+..++.+..+.++++.|+++++|++...++.+.++.-+.-.+..|+.|+++||. . +
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t-~-s-------------------- 71 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNT-R-S-------------------- 71 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcC-C-C--------------------
Confidence 44566777777888999999999999999999999999999999999999999954 1 1
Q ss_pred cccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccC-ChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q psy1432 327 CYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLAL-PTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~-~~~~lliialil~glG~g~~~~~~~al~ae~fp 405 (850)
++.+||+.++++.+..+++.+++.. .|.... ..+..+++..++..++......+..++.+|+.+
T Consensus 72 -------------r~Grrrp~il~g~i~~~i~~~llf~--~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~ 136 (473)
T PRK10429 72 -------------RWGKFKPWILIGTLANSVVLFLLFS--AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL 136 (473)
T ss_pred -------------CCCCcchhHhhhhHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC
Confidence 1112466666676655555443322 121111 122334444455567777778888999999984
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 406 ~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
+.++|.+.+++.....++|+.+.+.+...+...
T Consensus 137 ---~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 137 ---DKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788988888888888888777666555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-12 Score=143.71 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++.++...+...+... +...+...+.+++|++..+.+++.+.+.++..++.+++|+++||+ |
T Consensus 5 ~~~~~~~f~~~G~~~~-~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G---------------- 66 (410)
T TIGR00885 5 FALITSLFALWGFAND-ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-S---------------- 66 (410)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C----------------
Confidence 4444445555554443 333344566889999999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+++..+.+++.++.++..... ..++...+++++++.|+|.|...+...++.
T Consensus 67 -----------------------~r~~~~~g~~l~~~g~~l~~~~~----~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~ 119 (410)
T TIGR00885 67 -----------------------YKAGILLGLFLYALGAFLFWPAA----EIMNYTLFLVGLFILTAGLGFLETAANPYI 119 (410)
T ss_pred -----------------------chHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHhhHHHHHhhhhHHH
Confidence 99999999988888876654321 113557788899999999999999889999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC------------------CCccchHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSI-PCYG------------------GESCYALGFVVPAVL 461 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~-g~~g------------------~~~~w~~~f~I~a~l 461 (850)
.+..| ++++++..+..+...++|+.++|.+++.+.... +..+ +..+|+.+|++.+++
T Consensus 120 ~~~~~----~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~ 195 (410)
T TIGR00885 120 LVMGP----ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV 195 (410)
T ss_pred HHHCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 667888899999999999999999998886431 0000 012499999887765
Q ss_pred HHHHHH
Q psy1432 462 MVLALV 467 (850)
Q Consensus 462 ~lvalv 467 (850)
.++..+
T Consensus 196 ~~~~~~ 201 (410)
T TIGR00885 196 VLAVAL 201 (410)
T ss_pred HHHHHH
Confidence 554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-13 Score=149.32 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=97.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
..+..+..+....++++.|+++++|++..+++.+.++..+...+..|++|+++||. |++
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-~~~-------------------- 74 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSV-NTR-------------------- 74 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecC-CCC--------------------
Confidence 44556666666777888999999999999999999999999999999999999997 532
Q ss_pred ccccccccccccccccccee-hhhHHHHHHHHHHHHHHHhhhh-ccc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHhh
Q psy1432 327 CYFVPIIGAILADSFYGRYR-TIRVFSFVYVLGNILLCLGAVP-TLA-LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~-vili~~i~~~lg~ll~al~a~p-~l~-~~~~~lliialil~glG~g~~~~~~~al~ae~ 403 (850)
+ |||| .++.+.+...+..+++ +. .+ ... .......++...+.+++.+...++..++..++
T Consensus 75 --------------~-Gr~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 137 (448)
T PRK09848 75 --------------W-GKFRPFLLFGTAPLMIFSVLV-FW-VPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAM 137 (448)
T ss_pred --------------C-cCchHHHHHHHHHHHHHHHHH-Hh-CcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhh
Confidence 1 2455 4455555444333332 11 11 111 11223344445566777888888888888888
Q ss_pred cCCCcccchhhhHHHHHHHHHH-----HHHHHHHHHHH
Q psy1432 404 FCVPEQRFYLERFFSVYYFIIN-----IGGFLGMIFIP 436 (850)
Q Consensus 404 fp~p~~~~~r~s~~~~~~~~~~-----iGg~iap~I~~ 436 (850)
.++ .++|....++..++.+ ++..++|.+.+
T Consensus 138 ~~~---~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 138 TQQ---PQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 852 3456777666655433 44444555543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-12 Score=146.03 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=120.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcc
Q psy1432 249 FCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328 (850)
Q Consensus 249 ~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~ 328 (850)
+..+.....+.++++.|+++++|++...++.+.++..+.-.+..|+.|+++||. +.
T Consensus 19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~-~~----------------------- 74 (444)
T PRK09669 19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRT-RT----------------------- 74 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecC-CC-----------------------
Confidence 556666667778999999999999999999999999999999999999999996 31
Q ss_pred cccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhccc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q psy1432 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA-LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVP 407 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~-~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p 407 (850)
++.+||+.++.+++..+++.+++.. .|... ......+++..++.+++......+..++.+|+.+
T Consensus 75 -----------r~Grrrp~il~~~~~~~i~~~l~f~--~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~-- 139 (444)
T PRK09669 75 -----------RHGQFRPYLLWFAIPFGVVCLLTFY--TPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITN-- 139 (444)
T ss_pred -----------CCCCcchhHHHHHHHHHHHHHHHHh--CCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC--
Confidence 1222456666666655555433322 22221 1223444455555566666677778899999985
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 408 EQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 408 ~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
+.++|++..++.....++|+.+++.+...+....+..+...+|+..+.+.+++.++..
T Consensus 140 -~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 140 -DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 2466888999998888999888887766555543310111246666666555544443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-12 Score=147.47 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=121.9
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceeh
Q psy1432 268 DVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347 (850)
Q Consensus 268 ~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v 347 (850)
+..+.+.....+..+++.++..++++++|.+|||+ | ||++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-G---------------------------------------Rk~~ 150 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-G---------------------------------------RKPV 150 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-c---------------------------------------cHHH
Confidence 34557888888999999999999999999999996 9 9999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHH
Q psy1432 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIG 427 (850)
Q Consensus 348 ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iG 427 (850)
++++.++..++.++.+++ +++..+++.|.+.|++.++...+...+++|.++ +++|+.+..+ ......+
T Consensus 151 ~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~----~~~R~~~~~~-~~~~~~~ 218 (521)
T KOG0255|consen 151 LLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVS----PKQRGLALTL-GGFFFVG 218 (521)
T ss_pred HHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhccchhHHhHhhheeecC----cchhhHHHHH-HHHHHHH
Confidence 999999999888888886 788999999999999999999999999999997 7889999998 7777788
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 428 GFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 428 g~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+.++|.+++++... ||+.+++.....++.++.
T Consensus 219 ~~~~~~~~a~~~~~---------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 219 GLMLPAGAAYITRD---------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHH
Confidence 88888888888774 999999877666655444
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-13 Score=149.54 Aligned_cols=361 Identities=14% Similarity=0.100 Sum_probs=218.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcc
Q psy1432 249 FCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328 (850)
Q Consensus 249 ~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~ 328 (850)
+..+........+++.|+++.+|+++..++.+..+.-+...+..|+.|+++||. . +
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~-~-t---------------------- 66 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRT-R-T---------------------- 66 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeee-c-c----------------------
Confidence 555566666677899999999999999999999999999999999999999953 1 1
Q ss_pred cccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-ccc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC
Q psy1432 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-TLA-LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCV 406 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-~l~-~~~~~lliialil~glG~g~~~~~~~al~ae~fp~ 406 (850)
++++||+.++++.+...++.+++..+ .| ... ......+.+..+++.++......+..++.+|+.+
T Consensus 67 -----------r~Grrrp~~l~g~i~~~~~~~llf~~-~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~- 133 (428)
T PF13347_consen 67 -----------RWGRRRPWILIGAILLALSFFLLFSP-PPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP- 133 (428)
T ss_pred -----------cccccceEeehhhHHHHHHHHHhhcc-ccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc-
Confidence 11236667777777666665555432 12 111 1122344555566678888888888999999996
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccccCCchhhH
Q psy1432 407 PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRCPKKNII 486 (850)
Q Consensus 407 p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~~~~~~~~~ 486 (850)
+.++|.+..++......+|+.+...+.+.+.+..+.-....+|+....+.+++.+++.+......|+.+++.+.+.
T Consensus 134 --~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-- 209 (428)
T PF13347_consen 134 --DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-- 209 (428)
T ss_pred --cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc--
Confidence 3567899999999888888877777777776554311100157777777666555555444443333000000000
Q ss_pred HHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccc
Q psy1432 487 LQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQI 566 (850)
Q Consensus 487 ~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~ 566 (850)
++.++.+..+ .+.+.|.+.. ++....+.+.......+...++....-..
T Consensus 210 ---------------------~~~~~~~~~~------~~~~nr~~~~---l~~~~~~~~~~~~~~~~~~~y~~~~vl~~- 258 (428)
T PF13347_consen 210 ---------------------KKISLRDSLR------SLFRNRPFRI---LLLAFFLQWLAFALMNTFLPYYFTYVLGN- 258 (428)
T ss_pred ---------------------cccccccchh------hhcccchHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHhcC-
Confidence 0011111111 0111122221 22222333333333333334443332111
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccc
Q psy1432 567 FGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLEC 646 (850)
Q Consensus 567 ~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~ 646 (850)
.-....+..+..+..++..|+..+.. +|.++ .+.+.++.++.+++.+.......
T Consensus 259 ---~~~~~~~~~~~~~~~~v~~~~~~~l~----~r~gk----~~~~~~~~~~~~~~~~~~~~~~~--------------- 312 (428)
T PF13347_consen 259 ---EGLISIFMLIFFVASIVGSPLWGRLS----KRFGK----KKVYIIGLLLAALGFLLLFFLGP--------------- 312 (428)
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHHHHH----HHccc----eeehhhhHHHHHHHHHHHHHHHh---------------
Confidence 01122333344444555555554322 44443 45567788888887777665420
Q ss_pred ccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCC
Q psy1432 647 YNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSP 726 (850)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (850)
T Consensus 313 -------------------------------------------------------------------------------- 312 (428)
T PF13347_consen 313 -------------------------------------------------------------------------------- 312 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------cccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 727 GRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAP-------RSMKTVTIAAWQLSVALGNLIIICIEQL 790 (850)
Q Consensus 727 ~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP-------~~~rg~~~gl~~~~~~lG~~i~~~i~~~ 790 (850)
.+.+++.+..++.+++.+......+++..+..+ ++..|...|++++...+|..+++.+.+.
T Consensus 313 ---~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 313 ---GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred ---hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 144677777889999999999999999998887 3557999999999998888887766553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-11 Score=133.02 Aligned_cols=177 Identities=14% Similarity=0.027 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHH--HHHHHHHHHHHHHHH-HHhhhhcCCccceeeeecccch
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVL--YHIFYALCYFVPIIG-AILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i--~~i~~i~~~~~~~lg-G~LADr~lGr~k~l~~~~~~~~ 317 (850)
+..++...+.+...+......+|.|++ +.|+|..+.+.. ..+++....+..|+. ++++||+ |
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g------------- 67 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-G------------- 67 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-C-------------
Confidence 445666778888888888889999996 469999999997 467788887777777 5578887 8
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
|||.+++...+... ..+..+...... ......+.....+.++..+...+..-
T Consensus 68 --------------------------~r~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~d~~~d 119 (390)
T TIGR02718 68 --------------------------RRRSWVLPMQCLVS-ACLASLALVGPD-VAGAGWAVGLLACASLASATQDIATD 119 (390)
T ss_pred --------------------------cchhHHHHHHHHHH-HHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665444422111 111122111111 11112222333333344444555566
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
++..|..+ +++++.+.+.+..+..+|..+++...+++.+.. +|+..|++.+++.++..+..+.
T Consensus 120 ~~~~~~~~----~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-------gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 120 GMAAEHFN----GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-------GQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHhCC----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHHH
Confidence 67777775 555666777777777889999998888888874 3999999988777665554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-12 Score=153.79 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.+|.+...+....+......++......-+.++++++..+.+++.+.+.++..++.++.|+++||. |
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~------------ 96 (633)
T TIGR00805 30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-H------------ 96 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-C------------
Confidence 345555555545555555556666677788899999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhc---------------------c---c-
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPT---------------------L---A- 371 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~---------------------l---~- 371 (850)
|++.+.++++++++|.++.+++-+.. + .
T Consensus 97 ---------------------------r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~ 149 (633)
T TIGR00805 97 ---------------------------RPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENL 149 (633)
T ss_pred ---------------------------cceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCC
Confidence 88999999999999999888763110 0 0
Q ss_pred -------------------CChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy1432 372 -------------------LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGM 432 (850)
Q Consensus 372 -------------------~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap 432 (850)
...+..+++++++.|+|.+...+...+++.|.+| +++|+...++++.+..+|..+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~----~~~~~~~~~i~~~~~~iG~~lG~ 225 (633)
T TIGR00805 150 TQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK----SKNSPLYIGILESIAVFGPAFGY 225 (633)
T ss_pred CCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC----ccccHHHHHHHHHHHHhhhHHHH
Confidence 0124567889999999999999999999999998 78899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCC---------------ccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 433 IFIPMIRKSIPCYGGE---------------SCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 433 ~I~~~I~~~~g~~g~~---------------~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
++++++.+...+++.. .+|+.+|++.+++.++.++.+++.
T Consensus 226 llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 226 LLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999988652212100 137788888777666655544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=138.10 Aligned_cols=387 Identities=12% Similarity=0.157 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
++.|......+...+++-...++.+.|++++.|++..+.|.+.++..+...+.+|+.|.++||+ |.
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~------------- 72 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GL------------- 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TT-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hh-------------
Confidence 4566566566666666666778999999999999999999999999999999999999999998 82
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHH-HHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVY-VLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~-~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.+....++. ..+.+. .+...|.++.+.....+++-+.+++...+..|..-
T Consensus 73 -------------------------kK~Ll~~i~~l~~l~~pff-~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~E 126 (412)
T PF01306_consen 73 -------------------------KKHLLWFIAILLLLFGPFF-IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSE 126 (412)
T ss_dssp -------------------------CSHHHHHHHHHHHTCHHHH-HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 333332222211 112111 11122333332111222221222222223333333
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccccc
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYT 477 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~ 477 (850)
++..+.- ++.+-=+|-....+.+|.+++..++|++... +-+..|++.....++..+..+..++...
T Consensus 127 a~~er~s------r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--------~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 127 AYAERVS------RRNGFEYGRARMWGSIGFAIASLLAGILFNI--------NPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp HHHHHHH------HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred HHHHHHH------HHhcCCcchHHHHhhHHHHHHHHHhheeeee--------CccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 3332221 2223333444556778888888899988864 2466777766554444443333332221
Q ss_pred ccCCchhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1432 478 IRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRL---ISDMKTVLAILFVFIPLPLFWSLFDQLGSS 554 (850)
Q Consensus 478 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~---v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~ 554 (850)
+..+..+. . ...+++.+.++ +-..|+++.+..........|..++|+...
T Consensus 193 ~~~~~~~~-------------------~--------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~ 245 (412)
T PF01306_consen 193 PQAEVADA-------------------L--------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPI 245 (412)
T ss_dssp SSS-SSTT-------------------S--------SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcc-------------------c--------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110000 0 00000001111 112234444444444444566677776543
Q ss_pred HHHHHHhhcc-cccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhh
Q psy1432 555 WTFQAARTDS-QIFG--IHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVEL 631 (850)
Q Consensus 555 l~~~a~~~~~-~~~~--~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~ 631 (850)
+. ....+. ..+. ++.. -..+++.-...+.+.|.+ ++|. ++.+.+.++.+++++-.+..+...
T Consensus 246 y~--~~~f~~~~~g~~~~G~l-~s~~v~~E~~~m~~~p~l-------i~ri----g~k~~Lllag~i~~iRi~~~~~~~- 310 (412)
T PF01306_consen 246 YF--ASFFQSAGQGNQMYGYL-WSVQVFLEALMMFFSPWL-------INRI----GAKNLLLLAGVIMAIRIIGSGFAT- 310 (412)
T ss_dssp HH--HHTSSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHH-----HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HH--HHHhcccccChhHHhHH-HHHHHHHHHHHHHHHHHH-------HHhc----ChHhHHHHHHHHHHHHHHHHhhhc-
Confidence 32 111111 1100 0000 112333333333333322 2444 456677888888888877776432
Q ss_pred hccCCCCCCccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCccccccccc
Q psy1432 632 NLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNI 711 (850)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (850)
T Consensus 311 -------------------------------------------------------------------------------- 310 (412)
T PF01306_consen 311 -------------------------------------------------------------------------------- 310 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1432 712 TSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAW-QLSVALGNLIIICIEQL 790 (850)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~-~~~~~lG~~i~~~i~~~ 790 (850)
+++++++.=.+-++-..+...+..-|+.+.+|+++.++...+. ++..++|..+.+.+.+.
T Consensus 311 -------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ 371 (412)
T PF01306_consen 311 -------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY 371 (412)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3445665567778877888888999999999999998888884 78899999998888887
Q ss_pred hhccch-hHHHHHHHHHHHHHHHHHhhheee
Q psy1432 791 RGYVGQ-AGEFFLYACLIFLDMLLFYRITKR 820 (850)
Q Consensus 791 ~~~~~~-~~~f~l~a~l~~l~~l~~~~~~~~ 820 (850)
..+..+ ...|++++++.++..++-++..++
T Consensus 372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 777554 678999999888888777776554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-11 Score=136.93 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=123.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
..+..+..+..+.+|++.|+++.+|++...++.+..+.-+.-.+.-|+.|+++||.- +
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~--~-------------------- 74 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTR--S-------------------- 74 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCC--C--------------------
Confidence 445566667777789999999999999999999999999999999999999999861 1
Q ss_pred cccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccC-ChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q psy1432 327 CYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLAL-PTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~-~~~~lliialil~glG~g~~~~~~~al~ae~fp 405 (850)
++.+||+-++++.+..+++.+++.. .|.... .....+.+..++..++......+..++.+|+.+
T Consensus 75 -------------r~Gr~rp~il~g~i~~~i~~~llf~--~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~ 139 (460)
T PRK11462 75 -------------RWGKFRPWVLFGALPFGIVCVLAYS--TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN 139 (460)
T ss_pred -------------CCCCcchhHhHHHHHHHHHHHHHHh--CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC
Confidence 1223556666666666655444332 232211 112344555555677777888888999999996
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q psy1432 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLA 465 (850)
Q Consensus 406 ~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lva 465 (850)
+.++|++..++.....++|+.+++.+...+....|......+|.....+.+++.+++
T Consensus 140 ---d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 140 ---DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 467899999999999999998888887666554331110123555544444443333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-10 Score=130.63 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHH-HHHHHHHHHHHHHHHhhccch-------hHHHHHHHHHHHHHH
Q psy1432 740 VLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQL-SVALGNLIIICIEQLRGYVGQ-------AGEFFLYACLIFLDM 811 (850)
Q Consensus 740 vl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~-~~~lG~~i~~~i~~~~~~~~~-------~~~f~l~a~l~~l~~ 811 (850)
++-|+..++...++..++.+.+|++.|++++|+++. ..++|..++..+.+...+..+ ...|.+.+++.++..
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999876 467898888888887665321 235677788888888
Q ss_pred HHHhhheee
Q psy1432 812 LLFYRITKR 820 (850)
Q Consensus 812 l~~~~~~~~ 820 (850)
++++.+.|+
T Consensus 389 ~~f~~~fk~ 397 (400)
T PF03825_consen 389 VLFVILFKP 397 (400)
T ss_pred HHHHhhccC
Confidence 888887654
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=154.65 Aligned_cols=177 Identities=19% Similarity=0.281 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
++.+...+.+.+.++.-=|.+-. ...=..+.+|.+....|.+...+.++..++.|+.|+|+||+ .
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-N------------- 96 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-N------------- 96 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-C-------------
Confidence 35566666666776666665543 33345567999999999999999999999999999999999 8
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
|++++.+|..++.++.++..+. ..++.+.+.|.+.|+|.+.+.|..+
T Consensus 97 --------------------------R~~v~~vG~~iW~~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~ 143 (493)
T KOG1330|consen 97 --------------------------RKRVIAVGIFIWTLAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAP 143 (493)
T ss_pred --------------------------cceEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccch
Confidence 9999999999999999888876 3568899999999999999999999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
++++|.|| ...|+++++++|+++++|+++|-++++.+.+..+ .||++|.+.+++.++..++.++.
T Consensus 144 s~IaD~f~----~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~------~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 144 SLIADSFP----DDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF------WWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred hHhhhcCc----chhhhHHHHHhhhhcccccceeEEeeeeeccCcc------ceEEEEEeehHHHHHHHHHHHhh
Confidence 99999998 8899999999999999999999999888887754 49999999988887766655444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=138.20 Aligned_cols=186 Identities=14% Similarity=0.155 Sum_probs=138.3
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
++|+++... ..+.-.+..+.+...+-.++.+++|+|+.|.+++..++.+...+.-++-|.+.||+ |
T Consensus 12 ~~~~L~~S~-~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-G------------ 77 (417)
T COG2223 12 ARRNLWLST-LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-G------------ 77 (417)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-C------------
Confidence 556666555 44445555666666777888899999999999999999999999999999999999 8
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
-|++...+.++..+-.+..++... .++.+.+++..++.|++ |+..+..
T Consensus 78 ---------------------------gR~~~~~s~~l~~IP~~~~~~a~~----~~~~~~ll~~gll~G~~-GasFav~ 125 (417)
T COG2223 78 ---------------------------GRKWTILSMLLLLIPCLGLAFAVT----YPSTWQLLVIGLLLGLA-GASFAVG 125 (417)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHHcc----CCchHHHHHHHHHHhcc-cceehcc
Confidence 677777777765555555555421 13334555555566655 3456788
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccc
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMY 476 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~ 476 (850)
.++.+..|| +++.|.+.+++. ++|+|..+...+++++....+ .+ .|+..-.+..+.++++.+.+++..+..
T Consensus 126 m~~~s~~fP----~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-~~---~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 126 MPNASFFFP----KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-FL---AWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred cccccccCC----hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999998 888999999999 889999999999999888743 00 288777777777777667666665443
Q ss_pred c
Q psy1432 477 T 477 (850)
Q Consensus 477 ~ 477 (850)
+
T Consensus 197 p 197 (417)
T COG2223 197 P 197 (417)
T ss_pred h
Confidence 3
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-11 Score=135.99 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
+..+....+++.+. +.....++.++.+++|++..+.+...+...+...+-+ ++|.++||+ +...
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~-~i~G------------- 91 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTF-PLFG------------- 91 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-CCCC-------------
Confidence 34455577888888 8888889999999999999999888888777777655 499999998 5100
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
++||+.++++.++.. ......++ . .........+.+.+.+++.+....+.-++.
T Consensus 92 ---------------------~rRr~~l~~~~~l~~-~~~~~~l~---~-~~~~~~~~~~~~~l~~~~~a~~dv~~da~~ 145 (468)
T TIGR00788 92 ---------------------YTKRWYLVLSGLLGS-AILYGLLP---G-KVSSAKVAAAFIFLAALAKALYDVLVDSLY 145 (468)
T ss_pred ---------------------ccchHHHHHHHHHHH-HHHHHhcc---c-ccchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 115555555555432 11111111 1 112223333456667788888888899999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.|..+ +++..++...++.+...++|..+++.++|++.+.. +|+..|++.+++.++..+
T Consensus 146 ~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-------~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 146 SERIR--ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-------LTRILFLITAALLLLQLF 203 (468)
T ss_pred hhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-------CcchHHHHHHHHHHHHHH
Confidence 99996 33444555666777777899999999999998874 399999998877766643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-10 Score=129.43 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhh
Q psy1432 243 LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHI 322 (850)
Q Consensus 243 ~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~ 322 (850)
...+-...+....-++...+..-+....|++..++.++.........++...+|.++|++ |
T Consensus 81 ~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-g------------------ 141 (528)
T KOG0253|consen 81 FVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-G------------------ 141 (528)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-h------------------
Confidence 333444455555555555555666677899999999999999999999999999999999 9
Q ss_pred hhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHh
Q psy1432 323 FYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGE 402 (850)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae 402 (850)
||+.+....++..+...+... ++++..+++.+.+.+.|.|+ .|...++..|
T Consensus 142 ---------------------rr~~f~~T~l~t~v~~~is~~-------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle 192 (528)
T KOG0253|consen 142 ---------------------RRKGFNLTFLVTGVFGVISGA-------SPNFASLCVFRALWGFGVGG-LPVDSAIYLE 192 (528)
T ss_pred ---------------------cchhhhhhHHHHHHHHHhhcC-------CCCeehhhHHHHHHhccCCC-ccHhHHHHHH
Confidence 777665555432222222222 36778889999999999999 7999999999
Q ss_pred hcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH-HHHHh-cccccccC
Q psy1432 403 QFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV-MFVVG-KPMYTIRC 480 (850)
Q Consensus 403 ~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv-~~~~~-~~~~~~~~ 480 (850)
..| ...|..-.-.. +...+|..+.-.+.=....+. +||+-+....+...+.++ .++.. +++|.-.+
T Consensus 193 ~lp----~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-------gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~ 260 (528)
T KOG0253|consen 193 FLP----SSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-------GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK 260 (528)
T ss_pred hcc----CcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc
Confidence 997 22333333222 334577777777665555663 388777666643333333 22222 45554444
Q ss_pred CchhhHHHHHHHHHHhhhhc
Q psy1432 481 PKKNIILQFLKCMFYSLSKK 500 (850)
Q Consensus 481 ~~~~~~~~~~~v~~~~~~~~ 500 (850)
..+....+.++-+...-+++
T Consensus 261 G~~~kAletL~kiArmNg~q 280 (528)
T KOG0253|consen 261 GDDYKALETLHKIARMNGKQ 280 (528)
T ss_pred CChHHHHHHHHHHHHhcCCC
Confidence 44444445555444444333
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-11 Score=139.86 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhhhHHHHH---HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 242 YLILTIEFCERFSFCGLRT---MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t---~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+.++.|..+...|++.. .+-..+.+.++.+..+++|+.++...+..++.|+.+.+.||+ |
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g-------------- 109 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-G-------------- 109 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-C--------------
Confidence 4444455555555555542 344567788999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHH-HHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIF-IGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil-~glG~g~~~~~~~ 397 (850)
.|.+.+.|+++..+|.++..++ .+.+.+++...+ .|+|.|+.+.+..
T Consensus 110 -------------------------~R~v~i~G~~v~~~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~pai 157 (509)
T KOG2504|consen 110 -------------------------CRTVMIAGGLVAALGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAV 157 (509)
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchh
Confidence 8899999999999999999887 345555555555 5799999998899
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccc
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~ 475 (850)
..++..| +++|+.+.++...+..+|..+-|.+..++.+..| |+..+.+-+.+++..++.-.+.+|.
T Consensus 158 viv~~YF-----~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-------~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 158 VILGTYF-----EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-------WRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred hhhhhHh-----HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-------cHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999 6889999999888889999988888888888843 9999998887776666655555553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-10 Score=128.85 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKD-ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~-a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (850)
+++..|+.+++|++..+ .+.+..++..+..++.+++|+++||+ |
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G---------------------------------- 90 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-R---------------------------------- 90 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-C----------------------------------
Confidence 45667999999999999 99999999999999999999999999 8
Q ss_pred cccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHH
Q psy1432 339 DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418 (850)
Q Consensus 339 ~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~ 418 (850)
-|+++.++++.+++..++..++ .+...+.+.+++.|++.|+.. +...+++..|| +++|+++.+
T Consensus 91 -----~K~vL~l~~l~Wsl~t~L~~fa-------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP----~kER~rats 153 (511)
T TIGR00806 91 -----YKPVLVLQALSFVCVWLLLLLG-------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP----PSRYQRAAA 153 (511)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC----HHHHHHHHH
Confidence 7889989988888888777775 356889999999999999998 99999999998 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchH---HHHHHHHHHHHHHHHHHH
Q psy1432 419 VYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYAL---GFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 419 ~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~---~f~I~a~l~lvalv~~~~ 471 (850)
..+.+..+|.++++.+++++. ..| |+. ..+|..+...++++..++
T Consensus 154 i~~sg~~vG~~Ia~~L~qll~-s~g-------Wr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 154 YSRAAVLLGVFLSSVLGQLLV-TLG-------WISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcC-------chhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999954 432 664 445555555555554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-09 Score=128.08 Aligned_cols=172 Identities=10% Similarity=0.081 Sum_probs=124.4
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.|..+...+....+.. ..|++..+. ..+.+++|++..+.+++..+.... .++.+++|+++||+ |
T Consensus 26 Rw~~lva~~~~~~~~g-~~y~fsv~s-~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G------------ 89 (591)
T PTZ00207 26 RFALLVLGAFCSICTS-FMYAFNLIS-GAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-G------------ 89 (591)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-C------------
Confidence 3434444444444432 334444333 467889999999999998875544 35666789999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++.++++++.+|.++.++...... .++.+.+++.+++.|+|.+...+..
T Consensus 90 ---------------------------~R~vllig~ll~~iG~ll~ala~~~~i-~~s~~~l~l~r~l~G~G~~~~~~~~ 141 (591)
T PTZ00207 90 ---------------------------PRPIFVLSMTVFCLGTLLFALTFQEVI-EGSVVRLSVYNGLMTLGCMLFDLGA 141 (591)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887532221 2466888899999999998888888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFL-GMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~i-ap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
...+.+.|| ++|+.+.++......+|+.+ +++..+++... |+..|++.+++.++..
T Consensus 142 ~~~i~~~Fp-----~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~---------~~~~fl~l~vl~~vv~ 198 (591)
T PTZ00207 142 VVTVLSVFP-----SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN---------TSAYFFFLMSFALVVG 198 (591)
T ss_pred HHHHHHhCh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHH
Confidence 889999995 46799999999999999975 56555555432 6766666555444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=141.61 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.+...+...++..+.+|++.+|+|.|+++.+|++..+.+.+.....++..++.+++|+++||+ |
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g------------ 314 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-G------------ 314 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence 445555555556677788999999999999999999998888888888888889999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.+...++.+.+... ...++...+++++++.+++.++..+..
T Consensus 315 ---------------------------rr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~g~~ 363 (490)
T PRK10642 315 ---------------------------RRPFVILGSVALFVLAIPAFIL----INSNVIGLIFAGLLMLAVILNCFTGVM 363 (490)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776665333322221111 111234556667777777666666778
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
.++.+|.+| ++.|+++.++.+....++++++|.+.+++.+..+ +|+..+++..+..+++++..+
T Consensus 364 ~~~~~~~~p----~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~------~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 364 ASTLPAMFP----THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ------NLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHCC----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHHHHHHH
Confidence 888999998 7889999997666677778899999999987632 355555444444444444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=138.68 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=130.3
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.....+...++..+.+|...+|+|.|+++.+|++......+..+..+...++.+++|+++||+ |
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-g------------ 314 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-G------------ 314 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 445555555567778889999999999999999999998776666677777788889999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.+..... .. ..+....+++..++.+++.++..+..
T Consensus 315 ---------------------------rr~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (438)
T PRK09952 315 ---------------------------RRRVYITGALIGTLSAFPFFMA-LE--AQSIFWIVFFSIMLANIAHDMVVCVQ 364 (438)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHH-HH--cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776655433332222221 10 11222333445555567777777888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFII-NIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~-~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+++.+|.+| .+.|+++.++.+..+ .+|++++|.+++++.+..+ .+|...+.+.++..+++++..+.
T Consensus 365 ~~~~~e~~p----~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-----~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 365 QPMFTEMFG----ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-----GSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHCC----cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHHHH
Confidence 999999998 678888888765554 5899999999999988632 24887777776666666655444
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-11 Score=131.78 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccc
Q psy1432 256 CGLRTMLSLYLRDVLK----FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVP 331 (850)
Q Consensus 256 y~~~t~L~~YLt~~LG----ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~ 331 (850)
|.+..++.-.+....| -+...+|.+-+.|.+...++.+++|.+|||+ |
T Consensus 45 ~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-G--------------------------- 96 (451)
T KOG2615|consen 45 YPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-G--------------------------- 96 (451)
T ss_pred hHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-C---------------------------
Confidence 4444455544444444 4567889999999999999999999999999 9
Q ss_pred ccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccc
Q psy1432 332 IIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRF 411 (850)
Q Consensus 332 ~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~ 411 (850)
||.+++.+.+..++...+.+.+ .++..++++|.+.|+..|-. ++.-|+++|.++ ++
T Consensus 97 ------------Rkpvll~c~~~va~s~ll~~~S-------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~s----ek 152 (451)
T KOG2615|consen 97 ------------RKPVLLACLIGVALSYLLWALS-------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVS----EK 152 (451)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcC----hh
Confidence 9999999998777777777765 45667888899999988765 678899999997 68
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 412 YLERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 412 ~r~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
.|+.+++....+..+|..+||+|++++..
T Consensus 153 ~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 153 YRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hccceeeeeehhhhcchhhcchhhhHHHh
Confidence 89999999999999999999999999988
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-09 Score=127.12 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
...+.|...++|-+ ....|+.....+...++.++.|.|||.+ |
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-G----------------------------------- 106 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-G----------------------------------- 106 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-c-----------------------------------
Confidence 34567888899976 4455677778889999999999999999 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
||..++.+.+++.+|.++.+-+ +++..++.+..+.|+|.|... +....++|..| .+.|..+..+
T Consensus 107 ----Rr~~~i~g~~l~vvG~Iv~atA-------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p----~k~R~~~~~~ 170 (599)
T PF06609_consen 107 ----RRYFFIIGSLLGVVGSIVCATA-------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVP----NKWRGLGLAI 170 (599)
T ss_pred ----chHHHHHHHHHHHhHHHHhhcC-------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcc----cchhhhHhHH
Confidence 9999999999999999998865 677899999999999977654 55666899997 5666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
..+...+....+|.++..+... .+||+.|++.++...++++..+
T Consensus 171 ~~~~~i~~~~~~~~ia~~~~~~-------~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 171 ASIPFIITTWISPLIAQLFAAH-------SGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHhhhcccHHHHHHhccC-------CCcchHHHHHHHHHHHHHHHHH
Confidence 5544444444566666555433 3599999998877666655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-08 Score=116.29 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHH
Q psy1432 734 YMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVG--QAGEFFLYACLIFLDM 811 (850)
Q Consensus 734 ~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~--~~~~f~l~a~l~~l~~ 811 (850)
.+.+.-++.|+..+...+..-++..++.|+...+...|++.++....+.+||.+.+...+.. ....+....++.++++
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl 461 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL 461 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34444567889999999999999999999999999999999999999999998877665532 4566777777777777
Q ss_pred HHHhhh
Q psy1432 812 LLFYRI 817 (850)
Q Consensus 812 l~~~~~ 817 (850)
++.+++
T Consensus 462 ~ll~~v 467 (477)
T PF11700_consen 462 ILLFFV 467 (477)
T ss_pred HHHhhc
Confidence 777554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-11 Score=133.87 Aligned_cols=145 Identities=21% Similarity=0.260 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHH
Q psy1432 272 FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVF 351 (850)
Q Consensus 272 ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~ 351 (850)
++....+.+..+.+++..+++++.||++|++ | ||+++...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-G---------------------------------------RK~vYG~~ 120 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-G---------------------------------------RKKVYGKE 120 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------------------------------------chhhhhHH
Confidence 7888999999999999999999999999999 9 99999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH----HHHHHH
Q psy1432 352 SFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY----FIINIG 427 (850)
Q Consensus 352 ~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~----~~~~iG 427 (850)
.++..+++++++++.-..-...-++++..-|.++|+|.|+-+|+..+..+|... +++||...++.. ++.-.|
T Consensus 121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an----~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN----KKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh----hccccceeEEEEEecchhHhhc
Confidence 998888888666542111111235778888999999999999999999999987 888888776543 333444
Q ss_pred HHHHHHHHHHHHhhcCC---CC-CCccchHHHHHHHH
Q psy1432 428 GFLGMIFIPMIRKSIPC---YG-GESCYALGFVVPAV 460 (850)
Q Consensus 428 g~iap~I~~~I~~~~g~---~g-~~~~w~~~f~I~a~ 460 (850)
+.++.++....-.-.+. +- -+.-||..|.+.++
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 44444443332222111 00 01238888777654
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-09 Score=118.87 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccc
Q psy1432 258 LRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAIL 337 (850)
Q Consensus 258 ~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (850)
..-.+...+.+.++++..+++.+..+++.+..+..+..|++.+|+ |
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-g--------------------------------- 76 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-G--------------------------------- 76 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-h---------------------------------
Confidence 334567788899999999999999999999999999999999999 9
Q ss_pred ccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHH
Q psy1432 338 ADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFF 417 (850)
Q Consensus 338 ~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~ 417 (850)
+|+.++.+..++++|+++..-+ .+..++..++.++.+.+.|.+.......++++.+.| ++.-.+=.
T Consensus 77 ------yk~gi~lgL~l~avg~~lF~pA----a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~----~~~a~~rl 142 (422)
T COG0738 77 ------YKAGIVLGLLLYAVGAALFWPA----ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK----PESAAFRL 142 (422)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC----chhHHHHH
Confidence 8999999999888887775422 223566888899999999999999999999999997 22334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 418 SVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 418 ~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
+..+....+|++++|.+++++..+
T Consensus 143 nl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 143 NLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Confidence 566666789999999999998873
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-17 Score=180.50 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHH
Q psy1432 275 KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV 354 (850)
Q Consensus 275 ~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~ 354 (850)
...+++.++..++..++.+++|+++||+ | ||+++.++.++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-G---------------------------------------Rk~~~~~~~~~ 85 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-G---------------------------------------RKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-c---------------------------------------ccccccccccc
Confidence 4568889999999999999999999999 9 88899888888
Q ss_pred HHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q psy1432 355 YVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIF 434 (850)
Q Consensus 355 ~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I 434 (850)
..+|.++..++... .+...+.+++++.|+|.|+..+..+.++.|..| ++.|+....+.+....+|..++.++
T Consensus 86 ~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~----~~~R~~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 86 MIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAP----PKHRGFLSSLFQLFWALGILLASLI 157 (451)
T ss_pred cccccccccccccc----ccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc
Confidence 88888777765200 156888999999999999999999999999997 6778988888888888888877766
Q ss_pred HHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 435 IPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 435 ~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
...+... . ....||..+.++++..++.++
T Consensus 158 ~~~~~~~-~---~~~~Wr~~~~~~~~~~l~~~~ 186 (451)
T PF00083_consen 158 GYIVSYY-S---DNWGWRILLIFGAIPSLLVLL 186 (451)
T ss_pred ccccccc-c---ccccccccccccccccccccc
Confidence 5433221 1 013599988887765544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=123.85 Aligned_cols=181 Identities=17% Similarity=0.151 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++..+...++.....+.+..++|.|+.+.+|++..+.+++..+..+...++.+++|+++||+ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-------------- 279 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-L-------------- 279 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-h--------------
Confidence 4566677778888888888999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhhhccccccccccccccccccee-hhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYR-TIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~-vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+ .+........++.++..+........+. ....+...+.+.+..+..+...
T Consensus 280 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (399)
T TIGR00893 280 -------------------------RRGKSLVFARKTAIIAGLVLSLLMFATNYVNI-PYAALALVALGFFGLGAGAIGW 333 (399)
T ss_pred -------------------------hcccchhHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHhchhhhhHHH
Confidence 333 1111111111121111111110000112 2222233333332233678899
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
++.+|.+| ++.|++..++++...++|+.++|.+.+++.+..| +|+..|.+.++..+++.+..+
T Consensus 334 ~~~~~~~~----~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g------~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 334 ALISDNAP----GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG------SFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHhhcC----hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC------chhHHHHHHHHHHHHHHHHHH
Confidence 99999998 7889999999999999999999999999988743 388888887776666655443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-09 Score=124.07 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=122.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
..+..++.+.....|++-|.+++.|++...+|.+..+.-+.-.+.-|+.|.++||. - +
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t-~-~-------------------- 77 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRT-R-S-------------------- 77 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccc-c-c--------------------
Confidence 45566677777888999999999999999999999999999999999999999986 2 1
Q ss_pred cccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC
Q psy1432 327 CYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCV 406 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~ 406 (850)
++++||+-++.+++-.++...++..+. ..-........++...+.+++...+.-+..++.+|+-+
T Consensus 78 -------------r~GrfRP~lL~g~ip~~i~~~l~F~~p-~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~- 142 (467)
T COG2211 78 -------------RWGRFRPWLLWGAIPFAIVAVLLFITP-DFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ- 142 (467)
T ss_pred -------------ccccccHHHHHHhHHHHHHHHHHHcCC-CcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC-
Confidence 133466667777675555544443321 11112344556677777888888888899999999996
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 407 PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 407 p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.++|.+..++..+..++|+.+...+.+.+.+..+
T Consensus 143 --d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 143 --DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999998888888887744
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.4e-11 Score=133.12 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+|......++....++++..|+|.|+.+++|++..++++...++.++..++.+++|+++||+ |
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g-------------- 322 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-N-------------- 322 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
Confidence 4577777788888888888999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+.+..+..+..++..+..+. ...+...+.+.+.+.|++..+......+
T Consensus 323 -------------------------~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 372 (467)
T PRK09556 323 -------------------------GRRALVACIALALIIFTLGVYQ-----HATSEYMYLASLFALGFLVFGPQLLIGV 372 (467)
T ss_pred -------------------------CCchHHHHHHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6665544433222222111111 1122334445555555433332223346
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHhh-cCCC---C-CCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINI-GGFLGMIFIPMIRKS-IPCY---G-GESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~i-Gg~iap~I~~~I~~~-~g~~---g-~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
...|.+| ++.++++.++.+..+++ |+.++|.+.|++.+. .+.. + ...+|+.+|.+..++++++++..++
T Consensus 373 ~~~~~~p----~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 373 AAVGFVP----KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhhcc----hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 6779998 78899999999999987 779999999999981 0000 0 0135999998887777776655543
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=140.63 Aligned_cols=228 Identities=17% Similarity=0.239 Sum_probs=146.2
Q ss_pred ecc-ccCCccchhhhhcccccccCCcccchhhhcccccCCCccccccceeEEEecCCCCCCcchhchhhhhccccccChH
Q psy1432 161 IAM-NLNHKHDYKIRLTGKLKSEKSLEVSKQEHAKTFEGVPVEYGMNQIDVVLKDNLDNSSDIPVNLSLMKEMTSANYPK 239 (850)
Q Consensus 161 ~~~-~~~~k~~~~~~~~~r~~~ees~~~~~~~~~~~~~~~Pv~~~~~~i~~lLr~~l~es~~~~~~~~~~~~~~~~~~~r 239 (850)
|+| |.+||.++++|+ .++.-+++.+-.+ ++ ...| +...+++ +
T Consensus 216 ~~d~P~~h~~is~~El-~~I~~~k~~~~~~--~~---~~vP-------~~~i~ts------------------------~ 258 (466)
T KOG2532|consen 216 YSDSPSKHPNISEKEL-KYIEKGKSEAHVK--KK---PPVP-------YKAILTS------------------------P 258 (466)
T ss_pred hcCCcccCCCCCHHHH-HHHHhcccccccC--CC---CCCC-------HHHHHcC------------------------H
Confidence 455 999999999999 6665554433111 11 2334 2222322 6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+|.+....++++.+++.+.+++|+|+.+++|++.++.|++.+++++...+..+++|.+|||+. .|.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~--~~~l---------- 326 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLT--FRIL---------- 326 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hccC----------
Confidence 7999999999999999999999999999999999999999999999999999999999999982 2111
Q ss_pred hhhhhhhcccccccccccccccccceehh-hHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTI-RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vi-li~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+++ . +||.+ .++.. ..+..+..+ ......+....++ +..++.+..+.......
T Consensus 327 ------------------s~t-~-~rkifn~i~~~--~~ai~l~~l---~~~~~~~~~~a~~-~l~~~~~~~g~~~~Gf~ 380 (466)
T KOG2532|consen 327 ------------------SET-T-VRKIFNTIAFG--GPAVFLLVL---AFTSDEHRLLAVI-LLTIAIGLSGFNISGFY 380 (466)
T ss_pred ------------------chH-h-HHHHHHhHHHH--HHHHHHHee---eecCCCcchHHHH-HHHHHHHHcccchhhhH
Confidence 000 0 22332 22222 112222222 2222211111111 11122222221111111
Q ss_pred HH-HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 399 LC-GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 399 l~-ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.. .|.. ++..+.++++.++..+++++++|.+.+.+.... ....|+..|.+.+++++++.+.+.+.
T Consensus 381 ~~~~~~a-----pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~----t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 381 KNHQDIA-----PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN----TREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred hhhhhcc-----chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC----CHHHHHHHHHHHHHHHHHhchheeEe
Confidence 11 1212 567899999999999999999999999988531 11369999999999888887666543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.5e-11 Score=125.19 Aligned_cols=169 Identities=16% Similarity=0.107 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....+...+++|.|+++++|++..+.+.+.....+...++.+++|+++||+ |
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g-------------- 283 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-G-------------- 283 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4466677777788888888899999999999999999999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+.+..+.++..+..+..... . ....+...+++...+.+++.+...++..+
T Consensus 284 -------------------------~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (394)
T TIGR00883 284 -------------------------RRPVLIIFTVLAALLAVPLLMA-L--LDSGSFTLFFFLVLGLALIGGMYTGPMGS 335 (394)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHH-H--hcCCchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 7776654443322222111111 1 11123355556667777877788889999
Q ss_pred HHHhhcCCCcccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVY-YFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~-~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
+.+|.+| ++.|+++.+.. +....+|+.++|.+++++.+..| .|+..++....
T Consensus 336 ~~~~~~p----~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g------~~~~~~~~~~~ 388 (394)
T TIGR00883 336 FLPELFP----TEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG------DWYAIGYYLAA 388 (394)
T ss_pred HHHHhCC----ccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC------cchhHHHHHHH
Confidence 9999997 66788888874 44556888899999999998743 36665555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-09 Score=123.13 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=120.3
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceeh
Q psy1432 268 DVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347 (850)
Q Consensus 268 ~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v 347 (850)
+++|+...+-+.+.++|+++..++.+++|.|.||+ . -.+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~---------------------------------------ls~~ 113 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-P---------------------------------------LSKG 113 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-C---------------------------------------hHHH
Confidence 56778889999999999999999999999999998 6 2334
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHH
Q psy1432 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIG 427 (850)
Q Consensus 348 ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iG 427 (850)
+....+++.+-.++.+.. .+.+.+++.+++.|+..++..|+..++++..|. +.+|+.-+++++....+|
T Consensus 114 l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~----~~e~g~r~~~~~a~~~~g 182 (495)
T KOG2533|consen 114 LSVSGILWGLFGFLTAAV-------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYG----KSERGLRMGIWYASASLG 182 (495)
T ss_pred HHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcC----hhhhhhhHHHHHHhcchh
Confidence 433344333322222221 456888999999999999999999999999997 888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccc
Q psy1432 428 GFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPM 475 (850)
Q Consensus 428 g~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~ 475 (850)
+++|.+++..+.+..+ -++..+|++.|.+.+++.++..+..++..|.
T Consensus 183 ~i~ggliA~g~~~~~~-~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 183 NIFGGLIAYGVFKLNG-SGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred hHHHHHHHHHhhhhcC-CCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999988655322 1123569999999998777766655554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-10 Score=122.68 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=123.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++..+..+...+.....++.+..++|.|+++++|++..+++.+.....++..++.+++|+++||+ |
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g------------ 280 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-G------------ 280 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 334344444444444455556667899999999999999999988887788888899999999998 8
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+.+..+.+...+......+. ++...+++.+.+.+++.|...+..
T Consensus 281 ---------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 281 ---------------------------KRFLMRVAAVAGVCFYAGMLMA-------HSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766655544332222211111 223444455555556666656666
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.+...|.+| + +++++.+.++...++|+.++|.++|++.+.. +|+..|.+.+++.+++++..+.
T Consensus 327 ~~~~~~~~p----~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 327 MLYFQDLMP----G-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-------NYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHhCC----C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHh
Confidence 777889885 3 4788999998888999999999999999874 3898988877777666655443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=127.38 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=129.8
Q ss_pred hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehh
Q psy1432 269 VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTI 348 (850)
Q Consensus 269 ~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vi 348 (850)
.++-++.+.|++..+..+...+..|+.|.+.||+ | +|-.+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-G---------------------------------------y~ipm 139 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-G---------------------------------------YKIPM 139 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-c---------------------------------------cccHH
Confidence 4667888999999999999999999999999998 9 88888
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHH
Q psy1432 349 RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGG 428 (850)
Q Consensus 349 li~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg 428 (850)
++|..+.....++.++. .+.++++++|.+.|+|.+....+..++++|.|| +.++|++++|..-....+|-
T Consensus 140 ~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~---~d~er~~vmGialgfislG~ 209 (464)
T KOG3764|consen 140 VAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFP---EDNERGSVMGIALGFISLGV 209 (464)
T ss_pred HHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcc---cchhhhHHHHHHHHHHhccc
Confidence 89998888888888886 456899999999999999999999999999996 56789999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 429 FLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 429 ~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.+||.++|.+.+..| +..+|.|.+.++++..++.++.
T Consensus 210 lvgPpfGGilYe~~G-------k~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 210 LVGPPFGGILYEFAG-------KSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred eecCCcccchHhhcC-------CcCcHHHHHHHHHHHHHHHHhe
Confidence 999999999999854 8999999888777766654443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=117.95 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=119.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccc
Q psy1432 250 CERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYF 329 (850)
Q Consensus 250 ~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~ 329 (850)
+..........++|.|+.+++|.+..+.+.+.....+...++.+++|+++||+ |
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g------------------------- 263 (375)
T TIGR00899 210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-G------------------------- 263 (375)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c-------------------------
Confidence 33333445567889999999999999999888887777788889999999998 9
Q ss_pred ccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcc
Q psy1432 330 VPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409 (850)
Q Consensus 330 ~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~ 409 (850)
||+++.++.++..++.++.... ++.+.+++...+.+++.+...+...++..|.+|
T Consensus 264 --------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~---- 318 (375)
T TIGR00899 264 --------------KRRLMLLAALAGVAFYTGLAAD-------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP---- 318 (375)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----
Confidence 7777766655433332222221 233445555666677777777778888889885
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 410 RFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 410 ~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+ +++++.+.++...++|+.++|.+.+++.+.. +|+..|.+.++..+++.+...
T Consensus 319 ~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-------g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 319 G-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-------SYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHh
Confidence 3 3568999999999999999999999998874 388889888877666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-10 Score=122.09 Aligned_cols=171 Identities=13% Similarity=0.119 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....+.+..|+|.|+++.+|++..+++.+.+.+.++..++.+++|+++||+ |
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~-------------- 269 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-D-------------- 269 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4556666666777777788889999999999999999999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+.+.....+..++.++.... ++...+.+..++.|++.++..+...+
T Consensus 270 -------------------------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~G~~~~~~~~~~~~ 317 (394)
T PRK03699 270 -------------------------LQRILTVLAGLALVLMYLFVNT-------DDPSHLLYAILGLGFFSSAIYTTIIT 317 (394)
T ss_pred -------------------------hhhHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665554333333322221 22244445556667776777777778
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
...+..| +.++...+..+....+|+.++|.+.+++.+..| ++..+++.+++.++++++
T Consensus 318 ~~~~~~~-----~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-------~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 318 LGSQQTK-----VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-------LQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHcc-----CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-------chhhhhhhHHHHHHHHHH
Confidence 8888774 224556677777889999999999999998743 788888777666665444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-10 Score=127.35 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++....++.+.+|+|.|+.+++|++..++++...++.++..++.+++|+++||+ +++|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~--------- 330 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTL--------- 330 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC---------
Confidence 5678888888999999999999999999999999999999999999999999999999999998 643322
Q ss_pred hhhhhhhhcccccccccccccccccceeh---hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRT---IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v---ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
+++. +..+......+..+... .... .+....++.+.+.+.+.++..+.
T Consensus 331 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 381 (465)
T TIGR00894 331 -------------------------SLTAARKIFNGIGGLGPGIFAYAL---PYLS-AAFYLTIIILTLANAVSSGPLAG 381 (465)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHHHH---HHcC-CchHHHHHHHHHHHHHhhhhhhh
Confidence 1111 11111100111111111 1111 12233333344444444444455
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
..+...|..| +.++.+.++.+..+++|+.++|.+.+++.+..+ + .+|..+|++.++..+++.+...
T Consensus 382 ~~~~~~~~~~-----~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~-~---~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 382 VLINSLDLAP-----RFLGFIKGITGLPGFIGGLIASTLAGNILSQDS-K---NVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhhchhhcCh-----hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC-c---hHHHHHHHHHHHHHHHHHHHee
Confidence 5555667664 479999999999999999999999998876421 1 1488899888877777665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-10 Score=123.50 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=114.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++......+..++....+|.+.+|+|.|+.+.+|++..+++....+..++..++.+++|+++||+ |
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-g------------ 307 (432)
T PRK10406 241 NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-G------------ 307 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C------------
Confidence 333333334344445778899999999999999999999999988888888888999999999998 8
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++.++.++..+..+.... ... ...+....+....+...+.+...+..
T Consensus 308 ---------------------------rr~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
T PRK10406 308 ---------------------------RRTSMLCFGSLAALFTVPILS-ALQ--NVSSPYAAFGLVMCALLIVSFYTSIS 357 (432)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHH-HHH--cCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665554432222211111 011 01111222222222223333344567
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIIN-IGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~-iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+++.+|.|| ++.|+++.++.+..++ +++..+|.+.+++. ..| .|...+++.++..+++++..++
T Consensus 358 ~~~~~e~fp----~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g------~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 358 GILKAEMFP----AQVRALGVGLSYAVANALFGGSAEYVALSLK-SIG------METAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHCC----CCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhC------CCcHHHHHHHHHHHHHHHHHHH
Confidence 788999998 7889999999887765 44556888888664 433 3555666555555555444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-08 Score=106.93 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=126.3
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
-+..-+++++|+|.+.++.+.+++.+...+..+++.+|+-|+ |
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g------------------------------------ 75 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-G------------------------------------ 75 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h------------------------------------
Confidence 455677889999999999999999999999999999999998 9
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHH
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVY 420 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~ 420 (850)
..|.+..+.++..+|.++=... +...++.+-.+.|.|.+..+...++++-+-|| ++.+..++.|
T Consensus 76 ---~er~l~~~Llli~~G~~iR~~~--------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-----k~~~~mtglY 139 (395)
T COG2807 76 ---EERSLFLALLLIAAGILIRSLG--------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-----KRVGLMTGLY 139 (395)
T ss_pred ---hHHHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-----cchhhHHhHH
Confidence 7788888877766666654432 33677888888899999999999999999995 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 421 YFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 421 ~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
....++|+.+++.++..+.++.+ +|+.++.+-+...++++++++
T Consensus 140 s~sl~~~aaLaa~lavpla~~~~------gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 140 STSLGAGAALAAALAVPLAQHSG------GWRGALGFWALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHhhhhhHHHHhhc------cHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988732 599988887776666665544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=113.28 Aligned_cols=173 Identities=27% Similarity=0.419 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++..........+++.|+.+.+|.+..+.+.+.....++..++.+++|+++||+ |
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-------------- 239 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-G-------------- 239 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 4556666677778888888888999999888899999999999999999999999999999999 8
Q ss_pred hhhhhhhhccccccccccccccccccee-hhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYR-TIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~-vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+ .+..+.++..++.+..... ++...+++...+.+++.+...+...
T Consensus 240 -------------------------~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~ 287 (352)
T cd06174 240 -------------------------RRRLLLLIGLLLAALGLLLLALA-------PSLALLLVALLLLGFGLGFAFPALL 287 (352)
T ss_pred -------------------------hhhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHhccchhHH
Confidence 777 7777777666666655543 2346677888888999999999999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
++..|.+| +++|++..+.++...++|+.++|.+.+++.+.. +|+..|.+.+++.+++.+..
T Consensus 288 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-------~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 288 TLASELAP----PEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-------GYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CcchHHHHHHHHHHHHHHHh
Confidence 99999997 689999999999999999999999999998763 48999998887777666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=122.43 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
++.....+...++....++.+..|+|.|+++.+|++..+++++..+..++..++.+++|+++||+ |
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g------------- 302 (434)
T PRK15075 237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-G------------- 302 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 33333334445556677888889999999999999999999988888888999999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.++..+..++... .. ...++...+.....+.+++.+...+...
T Consensus 303 --------------------------~r~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (434)
T PRK15075 303 --------------------------RRPVLIAFTVLAILTAYPALS-WL--VAAPSFARMLAVELWLSFLYGSYNGAMV 353 (434)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHH-HH--HcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 777766554322221111110 00 0112223333334445566666667777
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhcC
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIIN-IGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~-iGg~iap~I~~~I~~~~g 443 (850)
++.+|.+| ++.|+++.++.+..+. ++++++|.+.+++.+..|
T Consensus 354 ~~~~e~~p----~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 354 VALTEVMP----AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHCC----CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 88999998 6778999998655554 568889999999999854
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=116.08 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++......++..........+.+.|. +++|++..+++.+..++.+...++.+++|+++||+ |
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g---------------- 268 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-G---------------- 268 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------
Confidence 44444444555555555556677775 56899999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+.+..+.++..++.++..+. + ......++....+.+++.+...+..+++.
T Consensus 269 -----------------------~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 320 (377)
T TIGR00890 269 -----------------------RQKTMSIVFGISAVGMAAMLFI--P---MLNDVLFLATVALVFFTWGGTISLFPSLV 320 (377)
T ss_pred -----------------------hhhhhhHHHHHHHHHHHHHHHc--c---cchhHHHHHHHHHHHHHhccchhccHHHH
Confidence 7777777776666655544332 1 11112334445566777777777788899
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
+|.+| +++|++..++++....+|+.++|.+.+++.+.. +|+..|.+.+++.++++
T Consensus 321 ~~~~~----~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 321 SDIFG----PANSAANYGFLYTAKAVAGIFGGLIASHALTEI-------GFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHhh----hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-------chhhHHHHHHHHHHHhc
Confidence 99997 778999999999999999999999999998874 38989888776655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=118.41 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=124.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhh
Q psy1432 244 ILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIF 323 (850)
Q Consensus 244 i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~ 323 (850)
.....++.....+....|+|.|+.+ .|++..+.+.+.....++..++.+++|+++||+ |
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g------------------- 283 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-R------------------- 283 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-h-------------------
Confidence 3334455556677788899999875 799999999999999999999999999999998 8
Q ss_pred hhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhh
Q psy1432 324 YALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403 (850)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~ 403 (850)
||+.+..+.+...++.++..+. ++...+.+..++.+++.++..+...++..|.
T Consensus 284 --------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (406)
T PRK11551 284 --------------------PRRVVLLIYAGILASLAALAAA-------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLF 336 (406)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777666544333333322221 2234444555566676666778888999999
Q ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 404 fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+| ++.|+++.++++....+|+.++|.+++++.+..+ +|...+++.....+++.+..+
T Consensus 337 ~p----~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~------~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 337 YP----TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR------STVGVIGASIPVILVAALAAL 393 (406)
T ss_pred cc----hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC------chHHHHHHHHHHHHHHHHHHH
Confidence 98 7889999999999999999999999999987632 466666666555555444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-09 Score=116.99 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=124.7
Q ss_pred HHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccc
Q psy1432 250 CERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYF 329 (850)
Q Consensus 250 ~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~ 329 (850)
+..++++...++++.|+.+ .|++ +.+.....+.++..++.++.|+++||+ |
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~------------------------- 277 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-G------------------------- 277 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-c-------------------------
Confidence 3455666677888888864 5663 445666677778888889999999998 8
Q ss_pred ccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcc
Q psy1432 330 VPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409 (850)
Q Consensus 330 ~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~ 409 (850)
||+.+..+.++..++.++..+. ++...++++.++.|++.++..+...+...|.+|
T Consensus 278 --------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~---- 332 (399)
T PRK05122 278 --------------GLRVAIVSLLVEILGLLLLWLA-------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVP---- 332 (399)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC----
Confidence 7777776666555555544432 233556667778888888877877788889887
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhccccc
Q psy1432 410 RFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYT 477 (850)
Q Consensus 410 ~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~ 477 (850)
+++|+++.++++...++|+.++|.+.+++.+.. +|+..|.+.+++.+++++......++.+
T Consensus 333 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 333 PQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-------GYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 788999999999999999999999999998874 3999999888777777665554444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=121.24 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+|......++.....|++..|+|.|++++.|++..+++.+..++.+...++.+++|+++||+ +++
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~------------ 319 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRG------------ 319 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccC------------
Confidence 4567777777777778888899999999999999999999998888888889999999999998 522
Q ss_pred hhhhhhhhcccccccccccccccccceehh-hHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTI-RVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vi-li~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.. .....+..++.++..+. + ..+....++++.+.+.+..+......
T Consensus 320 -------------------------r~~~~~~~~~~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~~~~~~~~~~ 369 (452)
T PRK11273 320 -------------------------NRGATGVFFMTLVTIATIVYWLN--P---AGNPTVDMACMIVIGFLIYGPVMLIG 369 (452)
T ss_pred -------------------------CcchHHHHHHHHHHHHHHHHHHh--c---ccChHHHHHHHHHHHHHHHhHHHHHH
Confidence 33322 22222222222221111 0 11223333333333333222222334
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFL-GMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~i-ap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
++..|.+| ++.+++++++.+...++|+.+ +|.+++++.+..| |+..|.+.++..+++++...
T Consensus 370 ~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-------~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 370 LHALELAP----KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-------WDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHcC----hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-------chHHHHHHHHHHHHHHHHHH
Confidence 56779997 788999999999988888765 7999999998843 89999887776666655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=128.72 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHH
Q psy1432 281 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNI 360 (850)
Q Consensus 281 ~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~l 360 (850)
..+..++..++.+++|+++||+ | ||+++.++.++.+++.+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-G---------------------------------------Rr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-G---------------------------------------RLRMLAGSMVLSCISCF 640 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-C---------------------------------------CHHHHHHHHHHHHHHHH
Confidence 4455677888999999999998 9 88888888776666666
Q ss_pred HHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 361 LLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 361 l~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
+..+. ++...+++.+++++++.++..+...++.+|++| .+.|++++++.+.+..+|++++|.+++++.+
T Consensus 641 l~~~~-------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P----t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 641 FLSFG-------NSESAMIALLCLFGGLSIAAWNALDVLTVELYP----SDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 222445555566666666777888999999998 7889999999999999999999999998876
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 441 SIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 441 ~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
. +....|++.+++++++.++..
T Consensus 710 ~--------~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 710 I--------TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred h--------hhHHHHHHHHHHHHHHHHHHH
Confidence 5 245677777666665544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=117.42 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
+..+...+....+.....+....++|.|+.+++|++..+++++.....++..++.+++|+++||+ |
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g------------- 302 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-G------------- 302 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------
Confidence 33333344444445555666778899999999999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.+..+.++..+..+.... . .++...+.++..+.+...++..+..+
T Consensus 303 --------------------------~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (405)
T TIGR00891 303 --------------------------RRKAYVCSLLAGQLLIIPVFA--I----GANVAVLGLGLFFQQMLVQGIWGILP 350 (405)
T ss_pred --------------------------chhhhHHHHHHHHHHHHHHHH--h----CCchHHHHHHHHHHHHHHccchhhHH
Confidence 777776665533221111111 0 12334444554555555556667788
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
++++|.+| ++.|++++++.+...++|+.++|.+.|++.+..|
T Consensus 351 ~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 351 KHLGEYFP----TDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHhhhCC----cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999997 6789999999999999999999999999999854
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-09 Score=115.62 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
.+......++...+++++.+|+|.|+.+ .|++..+++.+.+++.++..++.+++|+++||+ |
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~---------------- 268 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-D---------------- 268 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-c----------------
Confidence 4444445566677888899999999976 899999999999999999999999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+.+..+..+..++.++.... + ++...+ ...+.+++.++..+...+..
T Consensus 269 -----------------------~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~--~~~l~g~g~g~~~~~~~~~~ 317 (393)
T PRK09705 269 -----------------------RRKLLMLALVLQLVGFCGFIWL--P----LQLPVL--WAMVCGLGLGGAFPLCLLLA 317 (393)
T ss_pred -----------------------chHHHHHHHHHHHHHHHHHHHc--c----chHHHH--HHHHHHHhccchHHHHHHHH
Confidence 7777777665544444433211 1 111222 22345677777777777777
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.+.++ +++.+++.+++.+...++++.++|.+.+++.+..| +|...|++.+..++++++.....
T Consensus 318 ~~~~~---~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 318 LDHSV---QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------NYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchHHHHHHHHHHHHHHHHHHHh
Confidence 78874 24678999999999999999999999999999854 58888888777666665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-09 Score=118.38 Aligned_cols=177 Identities=12% Similarity=0.036 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++......++.....+.+.+|+|.|+.+++|++..+++...+++.++..++.+++|+++||+ ++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~------------ 310 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL-FNGN------------ 310 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh-ccCC------------
Confidence 456666666666677777888999999989999999999999999999999999999999998 4220
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
|+.......+...++.. .+...+. .+.....+....++++..+........
T Consensus 311 ------------------------r~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (434)
T PRK11663 311 ------------------------RGPMNLIFAAGILLSVG--SLWLMPF---ASYVMQAACFFTIGFFVFGPQMLIGMA 361 (434)
T ss_pred ------------------------ccHHHHHHHHHHHHHHH--HHHHccc---ccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222222111111111 1111111 111222222222232222222233556
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
.+|.+| ++.|+++.++.+...++|+.++|.+.+++.+..| |+..|++.+++.+++.+..
T Consensus 362 ~~~~~~----~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-------~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 362 AAECSH----KEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-------WTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHhccc----HhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-------cHHHHHHHHHHHHHHHHHH
Confidence 788887 7889999999999999999999999999998743 8889988877766655433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-10 Score=125.04 Aligned_cols=177 Identities=17% Similarity=0.151 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cccceeeeecccch
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFY-GRYRTIRVFSFDAT 317 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~l-Gr~k~l~~~~~~~~ 317 (850)
|.+|.+....++-...=|++.-|.|.|+.++.|+|..++.+..+.+=.++..+++++||+|||++ |
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg------------- 318 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG------------- 318 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-------------
Confidence 78999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH--
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC-- 395 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~-- 395 (850)
||....+... ++..++.. ..+.....+..+..+.+..+| .-.+.|.
T Consensus 319 --------------------------rR~p~~~i~~---~~i~~~~~-~~w~~~~~~~~l~~~~l~~iG--f~IyGPqmL 366 (448)
T COG2271 319 --------------------------RRGPMALIFM---LLITASLV-LYWLAPNGSYLLDAILLFIIG--FLIYGPQML 366 (448)
T ss_pred --------------------------ccchHHHHHH---HHHHHHHH-HHHcCCCccHHHHHHHHHHHH--HHHhhHHHH
Confidence 5544432222 22222222 222221223344444444444 3333333
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINI-GGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~i-Gg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
......|..| ++-.|++.|...+.+-+ |..++-...+++.+.. +|..+|.+..+..+++.+.+..
T Consensus 367 iGl~a~e~~p----K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~-------gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 367 IGLAAAEFVP----KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW-------GWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred HHHHHhcccc----HhhccchhchhhhHHHHhhHHhcCCcceeeEecC-------CCcchHHHHHHHHHHHHHHHHH
Confidence 2344557777 88899999998888877 7788877888887763 3998888877666666554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-09 Score=115.24 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccc
Q psy1432 255 FCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIG 334 (850)
Q Consensus 255 ~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (850)
..+..+++|.|+.+.+|++..+.+++..+..++..++.+++|+++||. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~------------------------------ 287 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-R------------------------------ 287 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-C------------------------------
Confidence 456677899999988999999999999999999999999999999986 5
Q ss_pred cccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhh
Q psy1432 335 AILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLE 414 (850)
Q Consensus 335 ~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~ 414 (850)
+++.+..+.++..++.++..+. ++.....++.++.|++.+...+...+++.|.+| ++.|+
T Consensus 288 ---------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~g 347 (417)
T PRK10489 288 ---------PGLLMLLSTLGSFLAVGLFGLM-------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTP----DEMLG 347 (417)
T ss_pred ---------cchHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHHHH
Confidence 5566666655444444433322 334555666677778777777777889999997 78899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 415 RFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 415 s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
++.++++...++|+.++|.+.|++.+..| +...+++.++..++..+....
T Consensus 348 ~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 348 RINGLWTAQNVTGDAIGAALLGGLGAMMT-------PVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHhc-------hhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998743 666666655544444333333
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-09 Score=119.61 Aligned_cols=190 Identities=19% Similarity=0.155 Sum_probs=140.0
Q ss_pred cChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecc
Q psy1432 236 NYPKSIYLILTIEFCERFSFCGLRTMLSLYLRD-VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF 314 (850)
Q Consensus 236 ~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~-~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~ 314 (850)
.+||++++.....+.....+..+.+.+-.|+.+ +.+-+....|++.++..++..+..|+.|+.+-|. |+
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~--------- 100 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GS--------- 100 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CC---------
Confidence 378999999999999999999888888899975 4778888999999999999999999999999987 62
Q ss_pred cchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHH-HHhhhhcccCChHHHHHHHHHHHHHHhhchh
Q psy1432 315 DATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILL-CLGAVPTLALPTIKTTLLGLIFIGIGTGGIK 393 (850)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~-al~a~p~l~~~~~~lliialil~glG~g~~~ 393 (850)
-|+-++++.++..+|.++. ++...+. ....+++++|++.|+|.|..
T Consensus 101 -----------------------------~k~Pli~s~ii~~~g~llY~~l~~~~~---~~~y~mL~~R~l~Gvg~~n~- 147 (488)
T KOG2325|consen 101 -----------------------------VKKPLIVSFLIAIIGNLLYLALAYVPN---GVKYLMLVARILTGVGVGNF- 147 (488)
T ss_pred -----------------------------cccCHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHcCcCcccH-
Confidence 2566778888888888887 4443331 24588999999999998764
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------CccchHHHHHHHHHHHHHH
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGG-------ESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~-------~~~w~~~f~I~a~l~lval 466 (850)
+..-++.++.-. .+.|.++++....+..+|..+||.+...+.. +|..|- .+.|..+-++++++-++..
T Consensus 148 a~lR~Y~a~~s~----~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~-Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~ 222 (488)
T KOG2325|consen 148 AVLRAYIADAST----VEDRPRAFAATSGGFVLGIILGPTIQLAFTP-LGEKGFMILPGLIFNMYTAPAWLMAILWIIYI 222 (488)
T ss_pred HHHHHHHHhccC----ccchHHHHHHhhhHHHHHHHHhHHHHHHHhh-hcCCceEEcCcceEEecchHHHHHHHHHHHHH
Confidence 567788888654 4567788887777777777788777655432 232221 0224455566666666665
Q ss_pred HHHHHhc
Q psy1432 467 VMFVVGK 473 (850)
Q Consensus 467 v~~~~~~ 473 (850)
+++.+..
T Consensus 223 v~i~~~f 229 (488)
T KOG2325|consen 223 VIILFFF 229 (488)
T ss_pred HHHHhhe
Confidence 5555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-07 Score=102.15 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=96.2
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCccceeeeecccchhhhhhhhhhcccccccccccccccc
Q psy1432 266 LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSF---YGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFY 342 (850)
Q Consensus 266 Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~---lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (850)
+..+++++..-.+.+....++.+. ..+..|+.||+. +|.+
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~r------------------------------------ 48 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWR------------------------------------ 48 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCC------------------------------------
Confidence 356789999999999988887766 578899999975 1311
Q ss_pred cceehhhHHHHHHHHHHHHHHHhhhhcccC-------Ch-HH--HHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccch
Q psy1432 343 GRYRTIRVFSFVYVLGNILLCLGAVPTLAL-------PT-IK--TTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412 (850)
Q Consensus 343 ~Rr~vili~~i~~~lg~ll~al~a~p~l~~-------~~-~~--lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~ 412 (850)
|-+-+..+.++...|..+..+.... +.. +. .. ...++..+.|+|.+....+..++.+|..| +++
T Consensus 49 -RtPyI~~G~~~~~~g~~~ap~a~~~-l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~----e~~ 122 (403)
T PF03209_consen 49 -RTPYIWGGTLLQAGGLAIAPFALLL-LAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP----EER 122 (403)
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHHH-HcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC----Hhh
Confidence 4445566666666666666554332 222 22 22 23344444567777777888999999997 788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 413 LERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 413 r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
|+++.++.|....+|..++.++.+.+.+.
T Consensus 123 R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 123 RPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999988765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-09 Score=113.25 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=121.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhCCCHH---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhh
Q psy1432 248 EFCERFSFCGLRTMLSLYLRDVLKFSEK---DATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFY 324 (850)
Q Consensus 248 ~~~~~~~~y~~~t~L~~YLt~~LGls~~---~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~ 324 (850)
.++.......+..+++.|+.+..+.... ..+.+..++.++..++.+++|+++||+ |
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g-------------------- 286 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-G-------------------- 286 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--------------------
Confidence 3344444455667788888775543322 245555666777788889999999998 9
Q ss_pred hhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhc
Q psy1432 325 ALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQF 404 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~f 404 (850)
||+.+..+.++..++.+...+. ++...+++..++.|++.+...+...++..+..
T Consensus 287 -------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 287 -------------------PEKILITALIFSVLLLIPMSFV-------QTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 7777777766554444433322 23355666777788888888888888888887
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 405 CVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 405 p~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
| ++++++.++.++...++|+.++|.+++++.+.. +|+..|++.+++.+++.+..+.
T Consensus 341 ~----~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-------g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 341 S----NQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-------GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred C----cccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHH
Confidence 6 677899999999999999999999999998874 3999999988877777665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=118.99 Aligned_cols=160 Identities=8% Similarity=0.051 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccc
Q psy1432 253 FSFCGLRTMLSLYLRDVL---KFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYF 329 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~L---Gls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~ 329 (850)
..+.....++|.|+.+.+ +.+..+.+.+.++..+...++.+++|+++||+ |
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------------------- 290 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-G------------------------- 290 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------------------------
Confidence 334444556788887654 56777888999998888899999999999999 9
Q ss_pred ccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcc
Q psy1432 330 VPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409 (850)
Q Consensus 330 ~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~ 409 (850)
||+.+..+.++..++.++..+. ++...+++..++.+++.+...+....+..|.+|
T Consensus 291 --------------~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---- 345 (420)
T PRK09528 291 --------------AKNALLLAGTIMAVRIIGSGFA-------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFD---- 345 (420)
T ss_pred --------------cchhhHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 7787777777666665555442 334556666777777777766777788899997
Q ss_pred cchhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 410 RFYLERFFSV-YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 410 ~~~r~s~~~~-~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
++.+++..+. ++....+|+.++|.++|++.+..| |+..|.+.+++.++..+..+
T Consensus 346 ~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-------~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 346 VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-------FQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred ccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-------chHHHHHHHHHHHHHHHHHH
Confidence 5666666554 567778999999999999999743 99999987766655544433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=112.52 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++....++++.+++|.|+. ++|++..+++.+..++.++..++.++.|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~-------------- 285 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-G-------------- 285 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--------------
Confidence 34666666777888889999999999985 5899999999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhh-HHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIR-VFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vil-i~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.+. .+.+...++.+.+.+ .+....++....++..++.|++.++..+ ..
T Consensus 286 -------------------------~~~~~~~~~~l~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~ 337 (402)
T TIGR00897 286 -------------------------WMNTVRWFGGVGCGIFTLALYY--IPQHFGHSFAVALIIAIALGIFLAGYVP-LA 337 (402)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHH--HHHccCCcHHHHHHHHHHHHHHHHHHHH-HH
Confidence 555543 222222222222111 1111112334555566666776666544 44
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+...|..| ++|+++.++++....+|+.++|.+++++.+..| |...|++.+++.+++.+...
T Consensus 338 ~~~~~~~~-----~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-------~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 338 AVFPTLAP-----KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-------AIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHhhCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHHHHHHHHHHHH
Confidence 56677653 368999999999999999999999999998743 77788877766665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=111.95 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=122.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccc
Q psy1432 250 CERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYF 329 (850)
Q Consensus 250 ~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~ 329 (850)
+....+..+..+.+.|+.+ .|++. .+.....+.++..++.+++|+++||+ |
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g------------------------- 277 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-G------------------------- 277 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-C-------------------------
Confidence 3445566667788888865 56654 45556666677788889999999998 9
Q ss_pred ccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcc
Q psy1432 330 VPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409 (850)
Q Consensus 330 ~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~ 409 (850)
||+.+..+..+..++.++..+. ++...++++.++.+++.+...+...+...|.+|
T Consensus 278 --------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---- 332 (392)
T PRK12382 278 --------------GVKVAIVSLLVETVGLLLLWLA-------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVP---- 332 (392)
T ss_pred --------------CCeehHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----
Confidence 7777777776666655544332 233556667777788888777888888899997
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 410 RFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 410 ~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+++|+++.++++....+|+.++|.+.+++.+.. +|+..|.+.+.+.+++.+..+.
T Consensus 333 ~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 333 SQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-------GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CchHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999874 3999999888777776665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=122.23 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++..+...++..++++...++++.|+.+ +|++..+++++.++..++..++.+++|+++||. +.+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-~~~------------ 306 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK-WIR------------ 306 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccC------------
Confidence 346666666677777888888999999865 799999999999999999999999999999985 210
Q ss_pred hhhhhhhhcccccccccccccccccceehhhH--HHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRV--FSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili--~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
+++...+ +.+...++.++..+. ++...+++..++.|++.++..++.
T Consensus 307 -------------------------~~~~~~~~~~~~~~~l~~ll~~~~-------~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 307 -------------------------PHVQYLFSFALLFNGLTHLLCALA-------GDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhchHHHHH
Confidence 2222222 222222222222221 344666777888889988888999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
.+++.|.+| ++++++..++++...++|+.++|.+++++.+..+ +|+..|++.+++.+++.+..+
T Consensus 355 ~~~~~~~~~----~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g------~~~~~f~~~~~~~li~~~~~~ 418 (455)
T TIGR00892 355 FEVLMDLVG----AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK------NYKYIFYASGSIVVSAGLFLA 418 (455)
T ss_pred HHHHHHHhh----HHHHhhHHhHHHHHHHHHHHccccceeeeehhcC------CcchHHHHhhHHHHHHHHHHH
Confidence 999999997 6789999999999999999999999999988743 488899988877666655433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-09 Score=111.14 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....+.+..++|.|+.+.+|++..+++.+.....++..++.+++|+++||. +++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~------------ 282 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL-FNG------------ 282 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHH-cCC------------
Confidence 3466666666777777788889999999999999999999999999999999999999999987 311
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHH-HHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF-VYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i-~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
|+..+..... ...++..+.. .....+.....+...+.+....+..+...
T Consensus 283 -------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (379)
T TIGR00881 283 -------------------------RRGPLAVFFMALIIVSLLVYW-----LNPAANPLMDLICLFALGFLVYGPQMLIG 332 (379)
T ss_pred -------------------------cchHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2222211111 1111111111 10112223333444444544444455667
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
++..|.+| ++.|+++.++++...++|+.++|.+.|++.+..|
T Consensus 333 ~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 333 VIASELAP----KKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHhcC----cchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 78899997 7889999999999999999999999999999843
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-08 Score=110.27 Aligned_cols=173 Identities=15% Similarity=0.045 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++......++.....++..++++.|+.+..|++..+++++..+..++..++.+++|+++||+ |
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~---------------- 269 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-P---------------- 269 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-c----------------
Confidence 44444445555666666778889999888999999999999999999999999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+.+ .+..+..++..+.... .++...+++..++.|++.+...+...+.+
T Consensus 270 -----------------------~~~~~-~~~~~~~~~~~~l~~~------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 319 (390)
T PRK03545 270 -----------------------SGFLL-IAIALLLVCLLLLLPA------ANSEWHLSVLSIFWGIAIMCIGLAMQVKV 319 (390)
T ss_pred -----------------------hhHHH-HHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 65443 3333333332222111 12335556666677777766666677777
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.+..| +.++++.++++....+|..+||.++|++.+..| ++..|++.+++.+++++.....
T Consensus 320 ~~~~~-----~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 320 LKLAP-----DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-------LSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 78764 357889999988889999999999999998844 8999998888777776665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-09 Score=112.33 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++..+...+........+..+++.++ +++|++..++++......++..++.+++|+++||+ |
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~-------------- 347 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-G-------------- 347 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 3344444444444444444444555444 67899998889999999999999999999999998 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCC---hHHHHHHHHHHHHHHhh-chhh
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALP---TIKTTLLGLIFIGIGTG-GIKP 394 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~---~~~lliialil~glG~g-~~~~ 394 (850)
||+.+.++.++..++.++..+......... .....+....+.+.+.+ +..+
T Consensus 348 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (481)
T TIGR00879 348 -------------------------RRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGP 402 (481)
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccC
Confidence 788877777666666555553222211110 01222222223222222 2346
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
...++.+|.+| ++.|+.+.++.+...++|++++|.+.+++.+.. +|+..|++.+++.+++.+...+
T Consensus 403 ~~~~~~~~~~p----~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-------~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 403 VPWVIVSEIFP----LSLRPKGISIAVAANWLANFIVGFLFPTMLESI-------GVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred eehhhhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccceehhHHHHHHHHHHHHhe
Confidence 66778899997 778999999999999999999999999998874 3888888777666665554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=109.53 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccc
Q psy1432 253 FSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPI 332 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (850)
..+....+++|.|+++ .|.+..+.+.+.++..+...++.++.|+++||+ |
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~---------------------------- 263 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-G---------------------------- 263 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-C----------------------------
Confidence 3444455678999875 699999999999999999999999999999999 8
Q ss_pred cccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccch
Q psy1432 333 IGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412 (850)
Q Consensus 333 ~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~ 412 (850)
||+++..+.++..++.++.. + . .....++.+.+++.++..|+..+...|..| +++
T Consensus 264 -----------~~~~l~~~~~~~~~~~~~~~-~-------~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~----~~~ 318 (381)
T PRK03633 264 -----------RLLVLRVQVFVVILGSIAML-S-------Q--AAMAPALFILGAAGFTLYPVAMAWACEKVE----HHE 318 (381)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHh-h-------h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCC----HHH
Confidence 77777766665554443321 1 0 222334555566556667888888889886 556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 413 LERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 413 r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
++...+.++...++|+.++|.++|++.+..+ |+..|.+.+.+.+++.+
T Consensus 319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-------~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-------DNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHH
Confidence 6777778788889999999999999998843 88888887766654443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-08 Score=108.72 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++.........++.+.|+++ +|++..+.+.+..+..+...+..+++|++.||+ |
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g-------------- 268 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-S-------------- 268 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-C--------------
Confidence 445666666677777788888899999965 899999999999988888888999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+|+.+.++.+...+..++..++ ++.+.+++...+.++..+...++...
T Consensus 269 -------------------------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~q~l~g~~~~~~~~~~~~ 316 (382)
T TIGR00902 269 -------------------------ARDLLLISAIACVGRWAIIGAI-------EAFPLIFLLQILHCGTFAVCHLAAMR 316 (382)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHhH-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888777776665543 45567777788889999999999888
Q ss_pred HHHhhcCCCcccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYF-IINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~-~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
++.+. | ++.++.+.+.++. ...+|..++|.++|++.+..| + ..|.+.+++.+++++
T Consensus 317 ~i~~~-~----~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-------~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 317 YIAAQ-P----GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-------A-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHhC-C----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------H-HHHHHHHHHHHHHHH
Confidence 88887 7 6667888898874 457999999999999999843 4 456666655555543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=113.46 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
.|.+..-+...++.+-+...+.+....|.++++|++..+...+..+..+.+.++..++|++.||+ |.+
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k----------- 347 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPK----------- 347 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCc-----------
Confidence 35666677788888889999999999999999999999999999999999999999999999999 822
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-cccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-TLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
+++++.++.+++.+..+...+...+ ..+..+.+.+++.-++.|+..|+..+..
T Consensus 348 --------------------------~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~s 401 (477)
T PF11700_consen 348 --------------------------TKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSAS 401 (477)
T ss_pred --------------------------hhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHH
Confidence 2367766665443333333331111 1122344667777778899999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
-++.+++.| +.+.+.++++|.+..-..+.+||++.+.+.+.+| +.|.++....++.+++++++.+.
T Consensus 402 Rs~~~~LiP----~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg------~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 402 RSLFSRLIP----PGREAEFFGLYAITGKASSWLGPLLFGLITDATG------SQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHhCC----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchhHHHHHHHHHHHHHHHHhhc
Confidence 999999998 6778999999999999999999999999999865 47888887777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=113.36 Aligned_cols=177 Identities=12% Similarity=0.132 Sum_probs=127.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFS--------EKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls--------~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
..++..........+++.|+.+ .|.+ ....+.+.++..+...++.++.|+++||+ |
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g-------------- 279 (418)
T TIGR00889 216 FSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-G-------------- 279 (418)
T ss_pred HHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 3344333334445677888864 4544 46678888888889999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++.++.++..++..+..... . ...+...+++..++.+++.+...++...
T Consensus 280 -------------------------~r~~l~~~~~~~~v~~~l~~~~~-~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 280 -------------------------IKKVMLLSLVAWALRFGFFAYGD-P--EYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHcC-c--chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876666654444421 0 0012345566777788888888888899
Q ss_pred HHHhhcCCCcccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYY-FIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~-~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
+++|.+| ++.|+++.++++ ....+|+.++|.++|++.+..|..+ ..+|+..|.+.++..+++.+.+.+.
T Consensus 332 ~i~~~~p----~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~-~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 332 FVEKEVP----VHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG-TFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHCC----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 889999999997 4568999999999999998854211 0149999988877766665554444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-09 Score=118.09 Aligned_cols=182 Identities=18% Similarity=0.144 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+..|......+..--+|-++..++|.|+++++|++..+++.+...+.+...+.-++||+||||+ |
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-G-------------- 282 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-G-------------- 282 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-c--------------
Confidence 5678888888888888899999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
.+|++.+....+.++.++..++.....+.++....+...+.+++..|.-++....
T Consensus 283 -------------------------g~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk 337 (417)
T COG2223 283 -------------------------GRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFK 337 (417)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhee
Confidence 6666666655555555555543211112244455555555556666666777888
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+++..|| ++.+.+.++....+++||+.-|...+...+.+| ++..+|++-....+++.+..+.
T Consensus 338 ~Ip~if~-----~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg------~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 338 MIPVIFP-----KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG------SYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred echHHHH-----hhhhHHHHHHHHhccccccchhHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 8888884 578888999999999999999999999998865 5888998877777777665444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-08 Score=113.63 Aligned_cols=181 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....|++.+|+|.|+++..|++..+++++..+..+...++.+++|+++||+ |++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~------------ 317 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKG------------ 317 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC------------
Confidence 3456666666676777788999999999999999999999999999999999999999999998 722
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
|+ .. .+.+....+.+. .+ ........+.....+..++.+.+..+.......
T Consensus 318 -------------------------~~-~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 368 (438)
T TIGR00712 318 -------------------------NR-GA-TGVFFMTLVTIA-VI-VYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGL 368 (438)
T ss_pred -------------------------cc-cH-HHHHHHHHHHHH-HH-HHHhcCCCchHHHHHHHHHHHHHHccHHHHHHH
Confidence 22 22 222211111111 11 001111112222333333333332222222235
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGG-FLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg-~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
...|.+| ++.|+++.++++...++|+ .++|.+.|++.+..| |..+|++.++..+++.+..++.
T Consensus 369 ~~~~~~~----~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 369 HALELAP----KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-------WDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHhcC----hhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 6778887 7889999999998888875 579999999998743 8888887776666665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=114.00 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccc
Q psy1432 256 CGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGA 335 (850)
Q Consensus 256 y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (850)
+....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g------------------------------- 339 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-G------------------------------- 339 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------------------------
Confidence 34667899999989999999999999999999999999999999998 8
Q ss_pred ccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhh
Q psy1432 336 ILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415 (850)
Q Consensus 336 ~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s 415 (850)
||+++..+.++..++.++.... ...+...+.+...+.+....+..+..+++.+|.+| ++.|++
T Consensus 340 --------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~ 402 (496)
T PRK03893 340 --------TRKAYVCSLLISQLLIIPVFAI-----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFD----TEQRAA 402 (496)
T ss_pred --------chHHHHHHHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCC----HHHhhc
Confidence 7777766655433333222211 11222222232233222222344667788999997 778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 416 FFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 416 ~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
.+++++...++|+.++|.+.+++.+..| |+..+.+.+.
T Consensus 403 ~~~~~~~~~~~g~~lgp~l~g~l~~~~g-------~~~~~~~~~~ 440 (496)
T PRK03893 403 GLGFTYNVGALGGALAPILGALIAQRLD-------LGTALASLSF 440 (496)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhccCC-------hHHHHHHHHH
Confidence 9999999999999999999999998743 7766655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-09 Score=94.91 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHH
Q psy1432 283 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILL 362 (850)
Q Consensus 283 i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~ 362 (850)
.+.++..++.+++|+++||+ | ||+.+..+..+..++.++.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g---------------------------------------~~~~~~~~~~~~~~~~~~~ 45 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-G---------------------------------------RKPVLLVGLFIFVLSTAMF 45 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-c---------------------------------------hhHHHHHHHHHHHHHHHHH
Confidence 34567778899999999998 9 8888877777666665555
Q ss_pred HHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1432 363 CLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSI 442 (850)
Q Consensus 363 al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~ 442 (850)
.+. ++...+.+...+.+++.+...+...++..|.+| +++|++..+..+....+|+.++|.+.+++.+..
T Consensus 46 ~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 114 (141)
T TIGR00880 46 ALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP----PEERGVALGLMSAGIALGPLLGPPLGGVLAQFL 114 (141)
T ss_pred HHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC----hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc
Confidence 443 344667777888888888888899999999997 778999999999999999999999999998763
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 443 PCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 443 g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+|+..+++.+...+++.+...
T Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 115 -------GWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred -------chHHHHHHHHHHHHHHHHHHh
Confidence 488888887766555554443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=114.26 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRD-VLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~-~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
+.++......++....++++.+|+|.|+++ ..|++..+++.+.....++..++.+++|+++||+ |
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~------------- 307 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-K------------- 307 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-C-------------
Confidence 346777778888888999999999999977 3578899999999999999999999999999998 7
Q ss_pred hhhhhhhhhcccccccccccccccccceeh-hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRT-IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v-ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+. +....++..++. +.... . ++....+.+..+.+.|.....+..
T Consensus 308 --------------------------~r~~~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~~~~g~~~~~~~~ 354 (412)
T TIGR02332 308 --------------------------ERKHHTALPYLFAAAGW-LLASA----T--DHNLIQLLGIIMASMGSFSAMAIF 354 (412)
T ss_pred --------------------------ccHHHHHHHHHHHHHHH-HHHHh----c--CCHHHHHHHHHHHHHHhhhhhhHH
Confidence 4443 322222222222 11111 1 111222222333334433333444
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
++...|.+| ++.|+.+.++.+...++|++++|.+.+.+.+..| +|+.+|.+.++
T Consensus 355 ~~~~~~~~~----~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g------~~~~~~~~~~~ 408 (412)
T TIGR02332 355 WTTPDQSIS----LQARAIAIAVINATGNIGSALSPFLIGILKDATG------SFNSGLWFVAA 408 (412)
T ss_pred Hhhcccccc----hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC------CCchhHHHHHH
Confidence 455567776 7789999999999999999999999999988743 48888876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-08 Score=105.99 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDV--LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~--LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+.++......++....--.+..|++.|+.+. +|++..+++...+.+.++..++..++++++||+ |
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g------------ 206 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-S------------ 206 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------
Confidence 3455555555555555556778999999854 799999999999999999999999999999999 8
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
+++++.++.++..++.++.... ++ .....+..+.+++.+..+|..
T Consensus 207 ---------------------------~~~~l~~~~~l~~~~~~l~~~~-------~~-~~~~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 207 ---------------------------QGRYLAFNAFLAVLLSIGAALT-------HG-YVAMWFVLALGLFNSIMFPTI 251 (310)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHc-------CC-HHHHHHHHHHHHHHHHHHHHH
Confidence 6677766665544444333221 11 222345567789999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
.+...+.+| + ..+.+.+.. ..+.+|+.+.|.+.|++.+..| .+.+|+++..
T Consensus 252 ~s~a~~~~~----~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-------~~~a~~v~~~ 302 (310)
T TIGR01272 252 FSLALNALG----R-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-------IQLAFALPVP 302 (310)
T ss_pred HHHHHhhhh----h-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-------chHHHHHHHH
Confidence 999989885 2 234444444 4567999999999999998743 6777765553
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-08 Score=111.92 Aligned_cols=172 Identities=10% Similarity=0.108 Sum_probs=121.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 248 EFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYH-IFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 248 ~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~-i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
.++.....++..++.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g---------------------- 287 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-S---------------------- 287 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------
Confidence 34555666666778899998889999999999874 66678899999999999999 8
Q ss_pred cccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC
Q psy1432 327 CYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCV 406 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~ 406 (850)
||+.+.++.++..++.++...... ..++...+.+...+..++.|...+...++..+..+
T Consensus 288 -----------------~~~~l~i~~~l~~l~~l~~~~l~~---~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~- 346 (491)
T PRK11010 288 -----------------LFRALMIFGILQGVSNAGYWLLSI---TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN- 346 (491)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 667666555443333322221111 11233333334444344444445667788888887
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 407 PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 407 p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
++..++.+++.+...++|+.+++.++|++.+..| |+..|.+.+++.+.+++.....+
T Consensus 347 ---~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-------~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 347 ---KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-------WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999743 99999988887777766655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-08 Score=104.14 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLR-TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~-t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++..+...++.....+... .++|.|.++.+|++..+.+.+..+..++..++.+++|+++||+ |
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------------- 275 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-K-------------- 275 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 45555555556666666565 7888888888999999999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
|++.+..+.++..++.++..+. + ++...+++..++.+++.+...+...+
T Consensus 276 -------------------------~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (365)
T TIGR00900 276 -------------------------RMALMTGAIFVIGLAILVVGLT--P----PNFPLFLVLWFAIGVGYGPINVPQGT 324 (365)
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHhh--c----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655444444433332 1 12456667777888888888899999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
+..|.+| ++.|++..+.++...++|+.++|.++|++.+.
T Consensus 325 ~~~~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 325 LLQRRVP----AELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 78899999999999999999999999999876
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=104.61 Aligned_cols=148 Identities=20% Similarity=0.056 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+..+......++....++....|+| |+.+++|++..+++.+..+..++..++.+++|+++||+ |
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------------- 313 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-G-------------- 313 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--------------
Confidence 4445555556677777888888888 66778999999999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+.+ .+..+..+...+.... ..+...+++..++.+++.++..+...+
T Consensus 314 -------------------------~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (398)
T TIGR00895 314 -------------------------PRVTA-LLLLLGAVFAVLVGST------LFSPTLLLLLGAIAGFFVNGGQSGLYA 361 (398)
T ss_pred -------------------------hHHHH-HHHHHHHHHHHHHHHH------hhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66333 3332222222222110 123355566677778888888899999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMI 438 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I 438 (850)
+.+|.+| ++.|+++.++++....+|+.++|.++|++
T Consensus 362 ~~~~~~~----~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 362 LMALFYP----TAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHhhcCC----HHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999998 78899999999999999999999999876
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=110.41 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=100.7
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccc
Q psy1432 262 LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSF 341 (850)
Q Consensus 262 L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (850)
+..|+..+.+++.++.+++++++..-..+.+.++|||-||.+|-
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgi------------------------------------ 109 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGI------------------------------------ 109 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhh------------------------------------
Confidence 45666667777778888999998888889999999999998771
Q ss_pred ccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH
Q psy1432 342 YGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY 421 (850)
Q Consensus 342 ~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~ 421 (850)
|--+++.++ ...+|-++.+...+. +.++++..++.++|+|.-........+...+|+ .+...-++++.-
T Consensus 110 --r~gtii~~~-fv~~GqliFa~Ggi~----~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFK----GKELn~vfGlql 178 (459)
T KOG4686|consen 110 --RLGTIILCI-FVFLGQLIFAAGGIS----HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFK----GKELNFVFGLQL 178 (459)
T ss_pred --hHHHHHHHH-HHHHHHHHHHhchHH----HHHHHHHhhheeeccCchhhhhhhcceeEEEec----CccccchhhHHH
Confidence 223333333 334455555443221 456889999999999866555666778888897 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q psy1432 422 FIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 422 ~~~~iGg~iap~I~~~I~~~~g 443 (850)
..+-+|+.+-..+.+++.+.++
T Consensus 179 SvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 179 SVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHHhhceeeeeecHHHHHHHH
Confidence 8889999888888888887643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-08 Score=106.13 Aligned_cols=170 Identities=6% Similarity=0.067 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVL---KFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~L---Gls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
++..+...++....+.....+++.|+.+.+ +.+....+.+.++..+...++.++.|++.||+ |
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g------------- 282 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-G------------- 282 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 344444444444445555567889988776 55667778888888888899999999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+.+.++.++..++.++..+. ++...+++...+.+++.+.......
T Consensus 283 --------------------------~~~~l~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 283 --------------------------AKNALLIAGTIMSVRIIGSSFA-------TTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred --------------------------cchhHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877777666555443332 2335556666666776655545555
Q ss_pred HHHHhhcCCCcccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSV-YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~-~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
.+..+.+| ++.++...+. +++...+|+.++|.++|++.+..| |+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~----~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-------~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFD----VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-------FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCC----cceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-------cHHHHHHHHHHHHHHHHH
Confidence 56667665 5555665555 567889999999999999999843 889999877766555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-08 Score=107.09 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++..+...++.....+....+.+.|++..+| +....+.+..+..+...++.+++|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g-------------- 285 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-G-------------- 285 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 456666666777777777666666666666666 566677777788889999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+. .++...+++..++.+++.+...+...+
T Consensus 286 -------------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 286 -------------------------RKILFAGGILLMVLGYLIFFFA------GSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHc------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877777666655544332 123345556666778888888888999
Q ss_pred HHHhhcCC---CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCV---PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~---p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.+|..+. +..+++++.+++++++...+|+.+++.+.+++.+..|
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998741 1124567899999999999999999999999988765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-06 Score=91.67 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-----
Q psy1432 373 PTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP-CYG----- 446 (850)
Q Consensus 373 ~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g-~~g----- 446 (850)
.++..++++.++.|.|.+...+...+++++..+ ++++.+..++......+|..++|++++.+..... ...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~----~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~ 83 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGP----IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT 83 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 456788999999999999999999999999997 5568888999999999999999999998874310 000
Q ss_pred ---CCccchHHHHHHHHHHHHHHH
Q psy1432 447 ---GESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 447 ---~~~~w~~~f~I~a~l~lvalv 467 (850)
....|+.++++.+.+.++..+
T Consensus 84 ~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 84 ANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 002588888866554444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=112.03 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
+|......++.....+.+..|+|.|+.+++|++..+++.+.+++.++..++.+++|+++||+ ||++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~----------- 321 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGM----------- 321 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCc-----------
Confidence 44444444445555566778899999999999999999999999999999999999999998 854321
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
|++...........+..+..+ +.. .+.....+..++.+++.++..+...++.
T Consensus 322 -----------------------~~r~~~~~~~~~l~~i~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 373 (476)
T PLN00028 322 -----------------------RGRLWALWIVQTLGGVFCIWL---GRA--NSLGAAIVVMILFSIFVQAACGATFGIV 373 (476)
T ss_pred -----------------------chhHHHHHHHHHHHHHHHHHh---ccc--chHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 222222111111111111111 111 2233444444555555555555556666
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
.+.. ++.++...++.+.++++|+.++|.+.+ ..+ . .+|..+|++.+++++++.+..++.+
T Consensus 374 ~~~~-----~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~-~---~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 374 PFVS-----RRSLGVISGLTGAGGNVGAVLTQLLFF----TGS-S---YSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cccC-----hhhchhhhhhhhccccHHHHHHHHHHH----hcC-C---ccHhhHHHHHHHHHHHHHHHHHhee
Confidence 6655 357888888887776777776665532 211 1 1489999998888777776665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=109.81 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
..|......++..-+|.++..++|.|+++.+ +.........+..+...++.|++|+||||+ |
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G--------------- 314 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-G--------------- 314 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-C---------------
Confidence 4677777777776677777779999998755 344444445556678889999999999999 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
+++++.++.++..++..+..+ ..|.-...++..+.++.+.+.++.|.-++....+
T Consensus 315 ------------------------~~~vl~~~~i~~~i~~~~~~l-~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ 369 (462)
T PRK15034 315 ------------------------GVRVTLINFIFMAIFSALLFL-TLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQM 369 (462)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHhcccchHHHHh
Confidence 788887777655444433222 2221112344555555555556666666778888
Q ss_pred HHhhcCC------C-----------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q psy1432 400 CGEQFCV------P-----------EQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLM 462 (850)
Q Consensus 400 ~ae~fp~------p-----------~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~ 462 (850)
++..||. + ..+++.+.+.|+....+.+||++-|.+.++..+.+| ++..+|++..+..
T Consensus 370 ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g------~~~~~~~~~~~~~ 443 (462)
T PRK15034 370 IAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG------SPVGAMKVFLIFY 443 (462)
T ss_pred hHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC------CcHHHHHHHHHHH
Confidence 8888851 0 001257788888888999999999999888888765 5888888777666
Q ss_pred HHHHHHHHH
Q psy1432 463 VLALVMFVV 471 (850)
Q Consensus 463 lvalv~~~~ 471 (850)
++++++-+.
T Consensus 444 ~~~~~~~w~ 452 (462)
T PRK15034 444 IVCVLLTWL 452 (462)
T ss_pred HHHHHHHHH
Confidence 666554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-07 Score=100.53 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
.+..+...++.....+...++++.|+.+..|++..+.+.+.....++..++.+++|+++||+ |
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~---------------- 263 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-S---------------- 263 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-C----------------
Confidence 34444444444555556667788899888999999999999999999999999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
+++.+.++.++..++.++..... ++.....+...+.+.|.++..++.....
T Consensus 264 -----------------------~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (382)
T PRK10091 264 -----------------------PLRIAAVTDFIIVLALLMLFFFG------GMKTASLIFAFICCAGLFALSAPLQILL 314 (382)
T ss_pred -----------------------chhHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77777777665555554333211 1112333333444455444444444333
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
.+..+ + ++.++.+ ..+....+|+.++|.++|++.+..+ +|+..+.+.+++.++++..+.
T Consensus 315 ~~~~~--~-~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~------~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 315 LQNAK--G-GELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGL------AYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHhCC--c-chHHHHH--HHHHHHHHHHHHHHHHhHHHHHccc------CcchHHHHHHHHHHHHHHHHH
Confidence 33332 1 3334433 2355668999999999999998632 488888887666555544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-07 Score=101.19 Aligned_cols=138 Identities=16% Similarity=0.072 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccc
Q psy1432 253 FSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPI 332 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (850)
...+.+..++|.|+.+ .|++..+.+.+..+..++..++.+++|+++||+ |
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~---------------------------- 294 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-G---------------------------- 294 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----------------------------
Confidence 3444567789999876 699999999999999999999999999999998 8
Q ss_pred cccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH--hhchhhHHHHHHHhhcCCCccc
Q psy1432 333 IGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG--TGGIKPCVAALCGEQFCVPEQR 410 (850)
Q Consensus 333 ~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG--~g~~~~~~~al~ae~fp~p~~~ 410 (850)
||+.+..+.++..++.++.... + ... ...++..+.+++ ..+..+..++++.|.+| +
T Consensus 295 -----------~~~~~~~~~~~~~~~~~~~~~~--~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~ 352 (426)
T PRK12307 295 -----------LKKTFSIGLLMSFLFIFPLFRI--P---QDN--YLLLGACLFGLMATNVGVGGLVPKFLYDYFP----L 352 (426)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHH--c---ccc--HHHHHHHHHHHHHhcccHhHHHHHHHHHhCc----H
Confidence 7777766665443333322211 1 111 122222333332 22344567788899998 7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1432 411 FYLERFFSVYYFIINIGGFLGMIFIPMIRKSI 442 (850)
Q Consensus 411 ~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~ 442 (850)
+.|+++.++.+....+|+.++|.+.+++.+..
T Consensus 353 ~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 353 EVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 88999999999999999999999999998874
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-07 Score=104.37 Aligned_cols=156 Identities=17% Similarity=0.090 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+...+...++...++.....+.|.|++..+|.+..+.+++.....+...++.+++|+++||+ |
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g--------------- 325 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-G--------------- 325 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------
Confidence 455555566666666666666788888888999999999998888888888889999999999 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+++..+.++..++.++..+.. ..++...+.+..++.|++.+...+...++
T Consensus 326 ------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 377 (471)
T PRK10504 326 ------------------------YRRVLVATTLGLALVSLLFMLVA----LLGWYYLLPFVLFLQGMVNSTRFSSMNTL 377 (471)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777775555544443321 01222333445556667777777888889
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
..+.+| ++.++.++++.++...+|+++|+.+++.+.+..|
T Consensus 378 ~~~~~~----~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 378 TLKDLP----DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHcCC----HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999987 6789999999999999999999999999877644
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-07 Score=101.09 Aligned_cols=155 Identities=11% Similarity=-0.056 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++.......+.....+...++.|.|+.+++|++..+.+.......++..++.++.|+++||+ |
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~---------------- 279 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-P---------------- 279 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------------
Confidence 44444444445555566667789999999999999999888777778888999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
+|+.+.++.++..++.++..+.. .....+...+.++.++.++|.+...+...+..
T Consensus 280 -----------------------~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~ 334 (406)
T PRK15402 280 -----------------------LRSLIRMGLWPMVAGLLLAALAT--VISSHAYLWLTAGLSLYAFGIGLANAGLYRLT 334 (406)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77777777766666665554431 11223345566777778888877666555544
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSI 442 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~ 442 (850)
... + ++.+++..+.+++...+|+.+|+.+.+++.+..
T Consensus 335 ~~~-~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 335 LFS-S----DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred hhh-c----cccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 332 2 367899999999999999999999999887663
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-07 Score=101.06 Aligned_cols=174 Identities=17% Similarity=0.037 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYA-LCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i-~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
++..+...++...+.....++.+.|+.+ .|++..+.+++...... ...++.+++|+++||+ |
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g--------------- 272 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-G--------------- 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-h---------------
Confidence 4444445566666667777788899976 79999999999887764 5556678999999998 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
+|+.+..+.++...+.+......... ..+....++...++.+++.+...+...+.
T Consensus 273 ------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 327 (390)
T TIGR02718 273 ------------------------LWRTFILGVGLAGSLALLWFAQAAFW-LAPGIAVAWSCSAFGSLITGITSVAIYTA 327 (390)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHcc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666554322222221111111 11222333333344455566666677777
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
..+..+ +++.+++.++.++...++|+.++|.++|++.+..| |+..|.+.+++.++++
T Consensus 328 ~~~~~~---~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-------~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 328 FMRFAG---DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-------YAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHhC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHH
Confidence 777764 13678999999999999999999999999998743 8888887776555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-06 Score=92.56 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhCC---CH----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccc
Q psy1432 260 TMLSLYLRDVLKF---SE----KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPI 332 (850)
Q Consensus 260 t~L~~YLt~~LGl---s~----~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (850)
+++|.|+++..+- +. +..+...++..+...+..|+-|-++|.. |+
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~--------------------------- 87 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GP--------------------------- 87 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CC---------------------------
Confidence 4689999988764 33 3445666777778888889999999998 82
Q ss_pred cccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccch
Q psy1432 333 IGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFY 412 (850)
Q Consensus 333 ~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~ 412 (850)
||+.+.+..++..+..+.+.+. +. ...+...++.+++..++......+..+++.+..+ +.+
T Consensus 88 -----------Rk~~~~~f~~i~i~~~~~L~~i--~~--~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~----k~~ 148 (438)
T COG2270 88 -----------RKKFFGFFTAIGIISTFLLWFI--PP--GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTT----KDN 148 (438)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHh--CC--CchHHHHHHHHHHHHHhcchhheehhhHhhhhcC----ccc
Confidence 5666666555555544444432 11 1233445555555668888878888999999997 666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 413 LERFFSVYYFIINIGGFLGMIFIPM 437 (850)
Q Consensus 413 r~s~~~~~~~~~~iGg~iap~I~~~ 437 (850)
.++.++..+-.+.+|+.+..+++..
T Consensus 149 ~~riS~lg~~~gylgs~i~li~~~~ 173 (438)
T COG2270 149 MGRISGLGWALGYLGSVILLIFVVL 173 (438)
T ss_pred cCcccccccccccccchHHHHHHHH
Confidence 7778888888888999887776533
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=98.23 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++.......+....++....+.|.|+.+++|++..+++.+.....++..++.+++|+++||+ |
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~---------------- 270 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-G---------------- 270 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------------
Confidence 44444444555566677778889999999999999999999999999999999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+.+..+.++..++.++..+...+ ..+....++....+.++|.+...+...+..
T Consensus 271 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 325 (385)
T TIGR00710 271 -----------------------AKSLLRMGLILFAVSAVLLEITAIL--GLGSWAMIIGPMMFVGIGNSMISSIAMAYA 325 (385)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666555555544432211 112234445555667788888788888888
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
.|.+| ++++++.+.++.....++.+.+.+.+.+.+
T Consensus 326 ~~~~~-----~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 326 LEDFP-----HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred hccCc-----ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88774 357888888887765544444444444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=110.93 Aligned_cols=181 Identities=15% Similarity=0.055 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhcCCcc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATV------------LYHIFYALCYFVPIIGAILADSFYGRY 306 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~------------i~~i~~i~~~~~~~lgG~LADr~lGr~ 306 (850)
+..+......++..+.+|+...|+|.++. .+|++..+++. ...+..++..++.+++++++||+ |
T Consensus 288 ~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-g-- 363 (502)
T TIGR00887 288 KHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-G-- 363 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c--
Confidence 33333344455566788888889999985 67887543221 12233344555778899999999 9
Q ss_pred ceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHH
Q psy1432 307 RTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIG 386 (850)
Q Consensus 307 k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~g 386 (850)
||++++.+.++..++.++..+.... .. .. ..+........
T Consensus 364 -------------------------------------RR~~l~~~~~~~~~~~~~l~~~~~~-~~-~~-~~~~~~~~~~~ 403 (502)
T TIGR00887 364 -------------------------------------RKPIQLMGFFILTVLFFVLGFAYNH-LS-TH-GFLAIYVLAQF 403 (502)
T ss_pred -------------------------------------chhHHHHHHHHHHHHHHHHHHHHHh-cc-hh-HHHHHHHHHHH
Confidence 8888877776655555544432111 00 11 11111111111
Q ss_pred HHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCC--ccchHHHHHHHHHHH
Q psy1432 387 IGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCY-GGE--SCYALGFVVPAVLMV 463 (850)
Q Consensus 387 lG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~-g~~--~~w~~~f~I~a~l~l 463 (850)
.+..+..+..+++.+|.+| .+.|+++.++.+....+|++++|.+.+++.+..+.. |.+ .++...|++.++..+
T Consensus 404 ~~~~~~~~~~~~~~~E~~p----~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 479 (502)
T TIGR00887 404 FANFGPNATTFIVPGEVFP----TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMF 479 (502)
T ss_pred HHhcCCCchhhhhhhccCc----hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHH
Confidence 2222334567788899998 889999999999999999999999999988742100 000 124456666665555
Q ss_pred HHHH
Q psy1432 464 LALV 467 (850)
Q Consensus 464 valv 467 (850)
++.+
T Consensus 480 ~~~i 483 (502)
T TIGR00887 480 LGIL 483 (502)
T ss_pred HHHH
Confidence 5544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=100.22 Aligned_cols=153 Identities=15% Similarity=0.085 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++.......+....++.+.+|+|.|+++ .|++..+.+.+.++..++..++.+++|+++||+ |+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~~-------------- 261 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV-KD-------------- 261 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-cc--------------
Confidence 34544545556677778888999999975 799999999999999999999999999999998 61
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+++..+.++..++.+++.+.. .+ ... +..++.|++.+...+...+.
T Consensus 262 ------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~-~~~~l~g~~~g~~~~~~~~~ 309 (355)
T TIGR00896 262 ------------------------QRGIVAVLAVLQLVGLCGLLFAP------MH-GLW-AWALVLGLGQGGAFPLALTL 309 (355)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHHhh------hh-HHH-HHHHHHHHhhhhHhHHHHHH
Confidence 45555566555555554444321 11 111 23456788888888887777
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
..+..+ ++++++...++.+...++|+.++|.+.|++.+..|
T Consensus 310 ~~~~~~---~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 310 IGLRSR---QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHhcc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776653 25667888888888889999999999999998865
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=105.60 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++......++..+.+++...++|.|+++.+|++..+++++.....++..++.+++|+++||+ |
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~--------------- 319 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-D--------------- 319 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C---------------
Confidence 344455566667777888888999999999999999999999999999999999999999998 8
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+.+.++.++..++.++..+...+ ..+...+....++.|+|.+...++....
T Consensus 320 ------------------------~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 372 (485)
T TIGR00711 320 ------------------------PRKLVTIGLILYAVGFYWRAFTFTP---DTPFLAIALPQFIRGFGMGCFFMPLTTI 372 (485)
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776655555544421111 1233455566777888888877777777
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
..+.+| ++.++.+.+.+++..++|+.+++.+.+.+.++
T Consensus 373 ~~~~~~----~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 373 ALSGLP----PHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHhcCC----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887 78899999999999999999999999988765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-07 Score=98.85 Aligned_cols=152 Identities=7% Similarity=-0.031 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++..+...++.........++++.|+. +.|++..+.+.+..+..+...+...+.|++.||+ |
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~-------------- 268 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-S-------------- 268 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--------------
Confidence 34555555555555666666778889995 5899999999998888888888889999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+|+.+..+.+...++.++.... ++.+.+++..++.|++.+...+....
T Consensus 269 -------------------------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~ 316 (382)
T PRK11128 269 -------------------------ARDLLLLSAICGVVRWGLMGST-------TALPWLIVIQILHCGTFTVCHLAAMR 316 (382)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666555444332 34466677777788888877777777
Q ss_pred HHHhhcCCCcccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYF-IINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~-~~~iGg~iap~I~~~I~~~~g 443 (850)
+..+.. +.++++..+.++. ...+|..++|.++|++.+..|
T Consensus 317 ~~~~~~-----~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 317 YIAARP-----GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHCC-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777763 3345778887764 446777899999999998843
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-07 Score=114.31 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEK-DATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~-~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++..+...++.....+.+.+++|.|+.+.+|++.. ..+++.++..++..++.+++|+++||+ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~-------------- 297 (1146)
T PRK08633 233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-I-------------- 297 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e--------------
Confidence 344444445555556667778999999999999999 999999999999999999999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+++++.++.++..++.+++.+. ++...++++.++.|++.++..++..+
T Consensus 298 -------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~ 345 (1146)
T PRK08633 298 -------------------------ELGLVPLGALGLALSLFLLPTA-------PSLASVLVLFFLFGFSAGLFIVPLNA 345 (1146)
T ss_pred -------------------------EccchhHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6666666666555554444432 23456667777788888888888899
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
++.+.+| ++.|+++++++++..++|+.+++.+++.+..
T Consensus 346 ~~~~~~p----~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 346 LIQFRAP----EKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHhhcCC----ccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 7789999999999999999888887776654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-07 Score=105.21 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+.......++....+++...++|.|++..+|++..+++.......+...++.+++|+++||+ |
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g--------------- 323 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-G--------------- 323 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------
Confidence 455555666677777888888999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+.+..+.++..++.+++.... . ..+....++..++.|+|.|...+.....
T Consensus 324 ------------------------~~~~~~~g~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~l~G~g~g~~~~~~~~~ 375 (495)
T PRK14995 324 ------------------------LRLVATGGMALSALSFYGLAMTD---F-STQQWQAWGLMALLGFSAASALLASTSA 375 (495)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHHhc---C-CCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777666555554433211 1 1223445566777889888888878888
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
..+..| +++++.+.+.+++..++|+.+|+.+.+.+.++
T Consensus 376 ~~~~~~----~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 376 IMAAAP----PEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHhcCC----HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 77899999999999999999999999888764
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=101.38 Aligned_cols=169 Identities=14% Similarity=0.018 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+|......++....+|++.+|+|.|+++ .|++.. ++....++.+... +..++++||+ .|++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~----------- 254 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAG----------- 254 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhh-----------
Confidence 567888888999999999999999999965 688865 5666666555444 4458999998 5331
Q ss_pred hhhhhhhhcccccccccccccccccceeh-hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRT-IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v-ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+. .....++..++..+..+. .+....++...+.+++.....+..+
T Consensus 255 -------------------------~r~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~ 302 (368)
T TIGR00903 255 -------------------------LRSIYIRAAALLIAAFFLALAFE-------LNRLALFAFIGIAGLLMLPAYAIIM 302 (368)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHhhhhhHHHHH
Confidence 2333 222222222222221111 1112333344445555566667788
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
++.+|.+| ++.|+++.++.+..+++|+.++|.+.+.+... ....|.+.++..+++.+..
T Consensus 303 ~~~~~~~p----~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~---------~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 303 DWIGKFCD----KELHGKAAGAIGFTSRAISVALALAAMLFISS---------AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHhcc----hhhcCcccchhhHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHH
Confidence 99999998 88899999999999999999999999887732 4556666555555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-06 Score=99.00 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccc
Q psy1432 254 SFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333 (850)
Q Consensus 254 ~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (850)
+++....++|.++ +.+|++....++......+...++.+++|+++||+ |
T Consensus 286 ~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g----------------------------- 334 (479)
T PRK10077 286 GINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G----------------------------- 334 (479)
T ss_pred ChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------------------------
Confidence 3444444555554 56899888777777777888889999999999999 9
Q ss_pred ccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhc-hhhHHHHHHHhhcCCCcccch
Q psy1432 334 GAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGG-IKPCVAALCGEQFCVPEQRFY 412 (850)
Q Consensus 334 ~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~-~~~~~~al~ae~fp~p~~~~~ 412 (850)
||+.++.+.++..++.+++...... +... .....++.+.+.+.+. ..|+..++.+|.+| ++.
T Consensus 335 ----------~r~~~i~~~~~~~v~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----~~~ 397 (479)
T PRK10077 335 ----------RKPLQIIGALGMAIGMFSLGTAFYT--QAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFP----NAI 397 (479)
T ss_pred ----------ChHHHHHhHHHHHHHHHHHHHHHhc--Cccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCC----hhH
Confidence 8888888888777776665442211 1111 2233344444444443 34677899999997 788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 413 LERFFSVYYFIINIGGFLGMIFIPMIR------KSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 413 r~s~~~~~~~~~~iGg~iap~I~~~I~------~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
|+.++++.+...++|+.+++.+.+.+. +. .+|+..|++.+++.+++++..
T Consensus 398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 453 (479)
T PRK10077 398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-------FHNGFSYWIYGCMGVLAALFM 453 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-------ccCccHHHHHHHHHHHHHHHH
Confidence 999999999988898888877766554 33 237777777665555554443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=99.91 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+...+|.+.++.++..+..+-+.+.-+.++++.+|+|...++.+.+..++...+..|+.|.++|+. |
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G------------ 328 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-G------------ 328 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-c------------
Confidence 445789999999999888888888899999999999999999999999999999999999999998 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHH-HHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS-FVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~-i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
|+.....++ +...++-..+.++. ..-+++..++|+...+....
T Consensus 329 ---------------------------~n~~wv~~a~~~tl~~H~~l~Ft~---------lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 329 ---------------------------FNLWWVASACILTLLGHSGLFFTF---------LSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred ---------------------------ceehhHHHHHHHHHHHhhhHHhhh---------ccHHHHHHHHhhhHHHHHHH
Confidence 555444433 33333444444431 33456667777776666555
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.|+.++-+.| +++.|++++..+-..|+|-.+.|+++++|.++-|+|- |--+|.+....+.+..+
T Consensus 373 lWP~va~~vp----E~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~----~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 373 LWPCVASLVP----EEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD----NLEAFFLIIGLMALTSV 436 (459)
T ss_pred HhhhhhhhCC----HHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh----hHHHHHHHHHHHHHHHH
Confidence 7888888888 8899999999999999999999999999998754222 55566665554444333
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-06 Score=100.91 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+..++....+......+......+-+.+.++++.++.|++.+.+-+...+...+..+++-|. -
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-H-------------- 160 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-H-------------- 160 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-C--------------
Confidence 5566666666666555557778888899999999999999999999999999999999977775 4
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcc--------------c-------------
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL--------------A------------- 371 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l--------------~------------- 371 (850)
|-|.+-++++++++|.++.+++-+..- .
T Consensus 161 -------------------------rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~ 215 (735)
T KOG3626|consen 161 -------------------------RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKS 215 (735)
T ss_pred -------------------------ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCC
Confidence 666777888888888888887722110 0
Q ss_pred ----------------CC--hHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHH
Q psy1432 372 ----------------LP--TIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMI 433 (850)
Q Consensus 372 ----------------~~--~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~ 433 (850)
.. -+.+++++.++.|+|...+.+...+++=|-.. ++......++.+....+|-++|-+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk----~~~SplYlgi~~~~~~lGPaiGfl 291 (735)
T KOG3626|consen 216 TNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK----KKNSPLYLGILYSMAILGPAIGFL 291 (735)
T ss_pred ccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc----ccCCcHHHHHHHHHHHhhhHHHHH
Confidence 00 13367788888899988888888888877775 567778888888888899999988
Q ss_pred HHHHHHhhcCCCCC------------CccchHHHHHHHHHHHHHHHHHHHhccccc
Q psy1432 434 FIPMIRKSIPCYGG------------ESCYALGFVVPAVLMVLALVMFVVGKPMYT 477 (850)
Q Consensus 434 I~~~I~~~~g~~g~------------~~~w~~~f~I~a~l~lvalv~~~~~~~~~~ 477 (850)
+++++.+..-.+|. ...|..+|++.+.+++++.+.+++..+.++
T Consensus 292 lgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 292 LGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 88887654222211 135999999999988888887777655444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=99.53 Aligned_cols=144 Identities=28% Similarity=0.465 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFS-EKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls-~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
+|..+...++....++....++|.|+.+.+|++ ..+.+.+..+..++..++.+++|+++||+ |
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--------------- 271 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-G--------------- 271 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---------------
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------
Confidence 343444555556677778899999999999999 89999999999999999999999999998 8
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
+++...+......++.+...+... .++....+...++.|++.+...+...++
T Consensus 272 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 323 (352)
T PF07690_consen 272 ------------------------RRRRLLIAILLLILGALGLLLLPF----SSSPVWLIIALFLIGFGFGIVFPILFSL 323 (352)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHCCSHH----HCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544433333333222111 1334556667777888888889999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGM 432 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap 432 (850)
..|.+| +++++++.+.++...++|+.++|
T Consensus 324 ~~~~~~----~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 324 IQELVP----PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHCCCH----TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC----HHHHHHHHHHHHHHHHHHHHHCC
Confidence 999997 78899999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-07 Score=112.41 Aligned_cols=172 Identities=13% Similarity=0.003 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++..+...++..+.++++.+++|.|+.+.+|.+...++++.+.+.++..++.+++|+++|+. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~-------------- 289 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-I-------------- 289 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-e--------------
Confidence 4566666666777777788889999999999999999999999999999999999999999887 5
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhh-------------hhcccCChHHHHHHHHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGA-------------VPTLALPTIKTTLLGLIFI 385 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a-------------~p~l~~~~~~lliialil~ 385 (850)
+++.+..+.++..++.+.+.+.. ......++.+.++++.+++
T Consensus 290 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1140)
T PRK06814 290 -------------------------TLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL 344 (1140)
T ss_pred -------------------------eeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHH
Confidence 44444444443333333222210 0001113345667777888
Q ss_pred HHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 386 GIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 386 glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
|++.++..++..+++.+.+| ++.+|++++..++...+|..+++++++.+.... .++...+++.++
T Consensus 345 g~~~~~~~~~~~~~~~~~~p----~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~------~~~~~~~~~~~~ 409 (1140)
T PRK06814 345 AAAGGLYIVPLFAALQAWAN----PAHRARVIAANNVLNAAFMVAGTIILALLQALG------FSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHhHHHHHHHHHhhCC----cccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc------cCHHHHHHHHHH
Confidence 88888888889999999998 788999999999999999999999999887432 135555554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-07 Score=100.90 Aligned_cols=166 Identities=11% Similarity=0.105 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYL-RDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YL-t~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
+......++.....+....|++.|+ ++.+|++..+++.....+.++..++.+++|+++||+ |
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g---------------- 323 (438)
T PRK10133 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A---------------- 323 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C----------------
Confidence 3344445566666677778899996 567899999999999999999999999999999998 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+++..+.++..++.++..+. ++ ...+.+..+.++|.+...|...+..
T Consensus 324 -----------------------~~~~l~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~l~glg~~~i~P~~~s~a 372 (438)
T PRK10133 324 -----------------------PHKVLAAYALIAMALCLISAFA-------GG-HVGLIALTLCSAFMSIQYPTIFSLG 372 (438)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHc-------CC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765544443333221 11 1234556778899999999999999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.+.+| + +.+.+.++... ..+|+.++|.+.|++.+..| +-+.+|.++.+..+..+.
T Consensus 373 ~~~~~----~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g------~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 373 IKNLG----Q-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG------NIPTAELIPALCFAVIFI 427 (438)
T ss_pred Hcccc----h-hhccchhHHhH-HhccchHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHH
Confidence 99885 2 24455555543 44678888999999988742 256777776655444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-07 Score=99.96 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccc
Q psy1432 258 LRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAIL 337 (850)
Q Consensus 258 ~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (850)
...++|.|+++..+ +..+.+++.++..+.........+++.||.++
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~--------------------------------- 272 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFR--------------------------------- 272 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------
Confidence 45678999977655 66788888777666655555444555554325
Q ss_pred ccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHH
Q psy1432 338 ADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFF 417 (850)
Q Consensus 338 ~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~ 417 (850)
.++.+..+.++..++.++..+. ++...+.+...+.++|.+...|...++..+..| ++.++++.
T Consensus 273 ------~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p----~~~~g~~~ 335 (400)
T PRK11646 273 ------LEHRLMAGLLIMSLSMFPIGMV-------SNLQQLFTLICLFYIGSIIAEPARETLSASLAD----ARARGSYM 335 (400)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCC----cccchhhh
Confidence 3444555555555554444332 223445555566777777777888899999997 78899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 418 SVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 418 ~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+.++...++|+.+||.++|++.+..++++ .....|.+.+++.+++++.
T Consensus 336 g~~~~~~~~g~~ig~~l~G~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 336 GFSRLGLALGGAIGYIGGGWLFDLGKALN---QPELPWMMLGIIGLITLLA 383 (400)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHhhcC---CcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743222 1345555555544444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=97.98 Aligned_cols=176 Identities=20% Similarity=0.204 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++..+...++...+.|...+|+-.++++..|++....+++..++.++..++..++|+++|| +
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~--------------- 274 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--G--------------- 274 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--c---------------
Confidence 57778888888899999999999999999999999999999999999999999999999999 5
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
.|+++....++..+..+.+.+.. ++.....+...+.+++.+ |....+
T Consensus 275 ------------------------~~~~l~~~~~l~a~~~l~l~~~~------~~~~~~~~~~~~wg~a~~---~~~~~~ 321 (394)
T COG2814 275 ------------------------PRRALIAALLLLALALLALTFTG------ASPALALALLFLWGFAFS---PALQGL 321 (394)
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHhh---hhhhHH
Confidence 56666666554444444433321 222344444444444444 334444
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
..+..+ ..++.++.+.+++..+.|+|-.+|..++|.+.++. +++...++.+++.+++++..+...+
T Consensus 322 ~~~~a~--~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-------g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 322 QTRLAR--LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-------GYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHhcc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444442 12356888889999999999999999999999983 3888888888888888776665443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-05 Score=92.40 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--Cccceeeeecccchhhhhhhhhhcccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFY--GRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~l--Gr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (850)
-...|+.+++|++..+...+..+..+-. ..-++.|.++|.+- |++
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~r-------------------------------- 57 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYR-------------------------------- 57 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCc--------------------------------
Confidence 3456788999999999887776644433 34578999999652 522
Q ss_pred cccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHH
Q psy1432 339 DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418 (850)
Q Consensus 339 ~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~ 418 (850)
||.-++++.++..++.+.++.. +.. ..+.....+.+.+..+|.+..--+.-++..|.... ++..++...+
T Consensus 58 -----r~~Y~~i~~~~~~~~~~~~~~~--~~~-~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~--~p~~~g~lqS 127 (433)
T PF03092_consen 58 -----RKPYMIIGWLLGAVSALVLALL--PAS-ESSAAIAVVLLFLASFGYAFADVAADALVVELARR--EPESRGDLQS 127 (433)
T ss_pred -----chHHHHHHHHHHHHHHHHHHhc--ccc-cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--CCchhHHHHH
Confidence 5666666666554444443332 211 12334445555566688877777888999999862 2233888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 419 VYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 419 ~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+.+....+|+.++..+.|.+.+..+ ++..|.+.+.+.++..+..++
T Consensus 128 ~~~~~~~~G~lv~~~l~G~l~~~~~-------~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 128 FVWGVRSVGSLVGSLLSGPLLDSFG-------PQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCC-------CeEEehHHHHHHHHHHHHHHH
Confidence 9999999999999999999888743 777888776655555443333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-06 Score=101.18 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=129.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhh
Q psy1432 244 ILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIF 323 (850)
Q Consensus 244 i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~ 323 (850)
.+...++.++....+...+|.+..+.+|.+....|++.+++.+++.++.++.+++.+|+ +
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~------------------- 282 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-S------------------- 282 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C-------------------
Confidence 33333444444444556689999999999999999999999999999999999998887 7
Q ss_pred hhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhh
Q psy1432 324 YALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQ 403 (850)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~ 403 (850)
+++.+..+.++++++.+++++. ++.+...+++++.|++.........+..-+.
T Consensus 283 --------------------~~~lv~~~~~~~a~~~~~lal~-------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~ 335 (524)
T PF05977_consen 283 --------------------SRRLVLLASLLFALALLLLALS-------PSFWLALIALFLAGAAWIIANSSLNTLVQLS 335 (524)
T ss_pred --------------------cchhhHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777666665555553 3446666777777887777777777888888
Q ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 404 FCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 404 fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
.| ++.||++++++......+..+|..+.|.+.+..| -+..+.++++.++++.++..
T Consensus 336 ~P----~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-------~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 336 VP----DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-------VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred CC----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------HHHHHHHHHHHHHHHHHHHH
Confidence 87 8899999999999999999999999999999854 66777777765555554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=98.08 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+...++..++..++.....+.++-|.+..+|.+ ...+.+..+..+...++.+++++++||+ |
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-g-------------- 288 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-G-------------- 288 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-c--------------
Confidence 45667777788888888888888888999889988 5567777788899999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+.. .++.+.+++..++.|++.++..+...+
T Consensus 289 -------------------------k~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 289 -------------------------KKKVYIIGLLLAALGFLLLFFLG-----PGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred -------------------------ceeehhhhHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhHhhhccccccccc
Confidence 88888888887777766655431 135578888888899999999999999
Q ss_pred HHHhhcCCCc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCVPE---QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~p~---~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.+|..+..+ .+++.+..++.+.+...+|+++++.+.+.+.+..|
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999986311 23556888889999999999999999999887766
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-06 Score=92.86 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++......++.....++..++++.++.+++|++..+.+.+.....++..++.++.|++.||. +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~--------------- 280 (394)
T PRK10213 217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-V--------------- 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c---------------
Confidence 445444445555566666667774444567899999999999988888899999999999985 4
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHH-HHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLG-NILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg-~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
|+.+..+.++..+. .++.... ++.+.+.++.++.|++.+...+...+
T Consensus 281 -------------------------~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~ 328 (394)
T PRK10213 281 -------------------------KLALAGAPLVLAVSALVLTLWG-------SDKIVATGVAIIWGLTFALVPVGWST 328 (394)
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33333333322222 2222221 22355556677778888888888888
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lv 464 (850)
++.+..| ++.++..+.+....++|..+||.++|++.+..| ++..+...+++.++
T Consensus 329 ~~~~~~~-----~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-------~~~~~~~~~~~~~~ 382 (394)
T PRK10213 329 WITRSLA-----DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-------LTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------hhhHHHHHHHHHHH
Confidence 8888875 224455566666778999999999999998743 66666665544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=97.21 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDV--LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~--LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
.++......++..+....+..+.+.|+... .+.+....+.+.....+......++.|++.||. |
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~------------- 272 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-N------------- 272 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-C-------------
Confidence 344444455555555555556777777644 455666667777776666666778889999998 8
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
+|+.+..+.++..++.++..+.. ++...+.++..+.++|.+...|...
T Consensus 273 --------------------------~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~p~~~ 320 (395)
T PRK10054 273 --------------------------IRPLMTAGTLCFVIGLVGFIFSG------NSLLLWGMSAAVFTVGEIIYAPGEY 320 (395)
T ss_pred --------------------------chhHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777666666655444321 2334455667778888887778888
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
+++.+..| ++.+++.++..+ ...+|..++|.++|++.+..| ....|++.++.+.++++
T Consensus 321 ~~~~~~~p----~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-------~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 321 MLIDHIAP----PGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-------PWSLFVILALAIVAAWL 378 (395)
T ss_pred HHHHHhCC----cccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-------hhhHHHHHHHHHHHHHH
Confidence 88999887 556777777654 566899999999999999854 56666665544444433
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-06 Score=94.48 Aligned_cols=170 Identities=18% Similarity=0.103 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhhhHHHH---HHHHHHHHHhhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeec
Q psy1432 242 YLILTIEFCERFSFCGLR---TMLSLYLRDVLKFSEKD-----ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 313 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~---t~L~~YLt~~LGls~~~-----a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~ 313 (850)
.++....+...++++... .....+.....+..... .+.......+...+..++.|.++||+ |
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-g--------- 90 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-G--------- 90 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-h---------
Confidence 334444444444444443 45555555544432221 12222233567788889999999999 9
Q ss_pred ccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHH--HHhhc
Q psy1432 314 FDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIG--IGTGG 391 (850)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~g--lG~g~ 391 (850)
||..+.+..+...+..+...+.. +++++ +.+ -+.+.
T Consensus 91 ------------------------------rk~~L~~~~~~~~l~~~~~~~~~---------~~~~~---~~~l~g~~~~ 128 (463)
T KOG2816|consen 91 ------------------------------RKVVLLLPLFGTILPALCLLFQG---------YWFFL---LLGLSGGFSA 128 (463)
T ss_pred ------------------------------hhhhHHHHHHHHHHhHHHHHHHH---------HHHhh---hcccccchhh
Confidence 88888777664444444433321 11111 222 23344
Q ss_pred hhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 392 IKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 392 ~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+.+...++++|... .+.|....++.+.....++.++|.+++.+.+.. +....|.++.+..+++.+-..+
T Consensus 129 ~~s~~~a~vadis~----~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-------~~a~~f~ia~~~~~~~~~y~~~ 197 (463)
T KOG2816|consen 129 IFSVGFAYVADISS----EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-------GIALVFLIAAASGILSLLYMLL 197 (463)
T ss_pred hhhhhhhheeeccc----hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-------CchHHHHHHHHHHHHHHHHHhh
Confidence 55667788888875 678999999999888899999999999999883 3888999988877777665444
Q ss_pred hcc
Q psy1432 472 GKP 474 (850)
Q Consensus 472 ~~~ 474 (850)
..|
T Consensus 198 ~l~ 200 (463)
T KOG2816|consen 198 FLP 200 (463)
T ss_pred ccc
Confidence 433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=97.82 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+.......++...+++....+.+.|+++.+|.+....++......+...++.+++++++||+ |
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g-------------- 292 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-G-------------- 292 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 4455566666667777777777788888888998877666555544566778899999999998 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+|+++.++.++..++.++..+. ...+.+.++++.++.++|.+...+...+
T Consensus 293 -------------------------~~~~~~~g~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~g~G~~~~~~~~~a 342 (448)
T PRK09848 293 -------------------------KKNTFLIGALLGTCGYLLFFWV-----SVWSLPVALVALAIASIGQGVTMTVMWA 342 (448)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887666665554432 1123455666677788999999999999
Q ss_pred HHHhhcCCCc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCVPE---QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~p~---~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.+|..|..+ .+++.+..++.+++...+|+.+++.+.+.+.+..|
T Consensus 343 l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 343 LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999885110 12356888889999999999999999999887765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=98.18 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+..-+...+..+=+.-.+.++.-.|....+|++..+...+....++++.++++++|+|+||+ |
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g-------------- 316 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-G-------------- 316 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 3566666677777778888888999999999999999999999999999999999999999999 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
-|+++.++.+++.+..+...+... ...+++.-++.|...|+..+..-+
T Consensus 317 -------------------------~k~vl~~~lvi~~~~~~~~~~~~~-------~~~f~i~gll~g~s~G~~qA~SRS 364 (438)
T COG2270 317 -------------------------SKPVLMIGLVILSIAALYLIFLEG-------ELDFWILGLLVGTSLGGAQASSRS 364 (438)
T ss_pred -------------------------CceeehHHHHHHHHHHHHHHHccc-------cHHHHHHHHHHHHhcchHHHHHHH
Confidence 677887777766555444443321 245555556778888999999999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+.+++.| +++-+++++.|...+-.++.+||...+.+.+.+| +-|.++....++.+++++.+..
T Consensus 365 y~~~lvp----~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg------~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 365 YLARLVP----KGKEGRFFGLYALTGRAASFLGPFLVAVITQITG------SSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred HHHHhCC----CccccceeehhhhhhhHHHHHHHHHHHHHHHHhc------chhhHHHHHHHHHHhhHhhEEe
Confidence 9999998 6778999999999999999999999999988865 4677777766666666655443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.3e-06 Score=91.52 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFY-ALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~-i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (850)
.+.+.|+.+++|++..+.+++..... ++..++.+++|+++||+ |
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g---------------------------------- 274 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-G---------------------------------- 274 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-h----------------------------------
Confidence 45566778889999999999876544 45788899999999999 8
Q ss_pred cccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHH----HHHHHhhchhhHHHHHHHhhcCCCcccchhh
Q psy1432 339 DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLI----FIGIGTGGIKPCVAALCGEQFCVPEQRFYLE 414 (850)
Q Consensus 339 ~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliiali----l~glG~g~~~~~~~al~ae~fp~p~~~~~r~ 414 (850)
||+.+..+.++..+..+...+.... .++...++++.. ..+++.+...+....++.+.+| .+
T Consensus 275 -----~~~~l~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~--- 339 (402)
T PRK11902 275 -----LYRSLMLFGVLQAVSNLGYWVLAVT---PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----AT--- 339 (402)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HH---
Confidence 6776655555433333322211110 122233333332 3445566666777777777775 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHH
Q psy1432 415 RFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 415 s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
..+.+....++|+.+++.++|++.+..| |+..|.+.+++.+++++..
T Consensus 340 -~~~~~~~~~~l~~~~~~~~~G~l~~~~G-------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 340 -QYALLSALASVGRVYVGPTSGYLVEAYG-------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------hHHHHHHHHHHHHHHHHHH
Confidence 2344444556777766678999999854 8988888877666654443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.4e-06 Score=93.57 Aligned_cols=175 Identities=13% Similarity=0.100 Sum_probs=112.5
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
-.-.|.....| +...+.|...++.+++......+.|+.|++ |
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-G------------------------------------ 107 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-G------------------------------------ 107 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-c------------------------------------
Confidence 34457777778 778888999999999999999999999999 9
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhhhhcccCChHH--HHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHH
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIK--TTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~--lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~ 418 (850)
-|.+.+++.....+|..+=.++..|.... .++ +...+..+.+.....+...-.-.-+-+|| .++|..+..
T Consensus 108 ---LR~a~llgt~ln~iGa~Ir~iss~p~v~~-~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~----~~qra~A~~ 179 (480)
T KOG2563|consen 108 ---LRTALLLGTVLNGIGAWIRLISSLPFVPP-LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP----PDQRAIATV 179 (480)
T ss_pred ---hHHHHHHHHHHHHHHHHHhhhccCccccc-cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC----cchhhhhhh
Confidence 78888899998888888887766554422 222 45555555554444333332344456787 566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchH--HHHHHHHHHHHHHHHHHHhcccccccCCc
Q psy1432 419 VYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYAL--GFVVPAVLMVLALVMFVVGKPMYTIRCPK 482 (850)
Q Consensus 419 ~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~--~f~I~a~l~lvalv~~~~~~~~~~~~~~~ 482 (850)
.-.++.-+|..++-++.+.+..+..+ -+..+|.. .|+....+..+.++...+.++..++.||+
T Consensus 180 ~~v~~n~LGvavg~llppilV~~~~~-~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps 244 (480)
T KOG2563|consen 180 LGVMGNPLGVAVGFLLPPILVPSSKD-SEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS 244 (480)
T ss_pred HHHhcchHHHHHHhhccceecCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 77766677777777777777665310 01134554 35544444444443333444444444444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-06 Score=90.13 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=100.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhc
Q psy1432 248 EFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALC 327 (850)
Q Consensus 248 ~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~ 327 (850)
..+....++...+++|.|+. +.|++..+.+.......++..++..+++++.||+ |
T Consensus 212 ~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~----------------------- 266 (401)
T PRK11043 212 FAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-G----------------------- 266 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----------------------
Confidence 33444556667778888885 5799999999888777778888888999999998 8
Q ss_pred ccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q psy1432 328 YFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVP 407 (850)
Q Consensus 328 ~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p 407 (850)
+|+.+....+...++.+...+... ...++...++++..+.+++.+...+...+...+.+|
T Consensus 267 ----------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 326 (401)
T PRK11043 267 ----------------GEQLLPWLLVLFAVSVIAIWLASL--LSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-- 326 (401)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--
Confidence 666554444433333332222111 112233445555666777888878887777777774
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 408 EQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 408 ~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
+.++++.++++.....++.+++.+.+.+.+.
T Consensus 327 ---~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 327 ---QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred ---ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3589999999988788888888888877653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-06 Score=101.21 Aligned_cols=312 Identities=14% Similarity=0.082 Sum_probs=211.9
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCCh-HHHHHHHHHHHHHHhhchhh
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPT-IKTTLLGLIFIGIGTGGIKP 394 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~-~~lliialil~glG~g~~~~ 394 (850)
|+.++|.+.+.++..|..+|+++|. +...+....+.+.++.+...+.+........ .....+.++.++++.++..+
T Consensus 25 A~~i~~~f~~l~yl~pilGg~iAD~---~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg 101 (654)
T TIGR00926 25 STVLFHTFTYLCYLTPLIGAIIADG---WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence 4567888888888888888888885 7777777777666655555554332221111 12234566667788999999
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP-CYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g-~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
+-+.+.+++++ ..+++.+.+..+++++..+.+.. +.+++..+..... +++...++...++..++.+++.++.++...
T Consensus 102 iKp~vsaf~gd-qf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 102 IKPCVSAFGGD-QFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccCchhhhHh-hcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 43334566789999988877665 6777777766643 111100111344456666777777777777
Q ss_pred ccccccCCchhhHHHHHHHHHHhhhhcccCCchhhhhhh-hhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 474 PMYTIRCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHW-LDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLG 552 (850)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~ 552 (850)
..++.-++.+.....+.++.......... +......++ .+.......+..+++.+.+.+++.++...+.+++.+.++.
T Consensus 180 ~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~ 258 (654)
T TIGR00926 180 AGSKMYKKKPPKGNIVSKVIKCIVTALRK-RFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFD 258 (654)
T ss_pred HhccccCCCCCCccHHHHHHHHHHHHHHH-hhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666665444455565444432211 110001111 1111111122334567788899999999999999999999
Q ss_pred HHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy1432 553 SSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELN 632 (850)
Q Consensus 553 s~l~~~a~~~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~ 632 (850)
...+.+..+.+...+.++..+...+.++.+-.++.+++...+.++++.+.+++..+.+++.-+.+.+.++.+.++..+..
T Consensus 259 Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~v 338 (654)
T TIGR00926 259 QQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALV 338 (654)
T ss_pred cchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876666666778899999999999999998778999998876667888999999999999999998864
Q ss_pred c
Q psy1432 633 L 633 (850)
Q Consensus 633 ~ 633 (850)
.
T Consensus 339 e 339 (654)
T TIGR00926 339 Q 339 (654)
T ss_pred H
Confidence 3
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-06 Score=89.43 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++..+...++...+.+.+..+.|.|+.+.+|++..+++.+..+..++..++.+++|+++||+ |
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g---------------- 258 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-G---------------- 258 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C----------------
Confidence 34444445555566667777888888889999999999999999999999999999999999 9
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALC 400 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ 400 (850)
||+++..+.++..+..+........ ..+...+.++..+.+.+.+...+...+..
T Consensus 259 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T PRK11102 259 -----------------------ALNMLRFGLWIQFIMGIWLVVSALL---DLGFWALVVGVAAFVGCVSMISSNAMAVI 312 (377)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777776665433322222111100 01223333444444444455455555566
Q ss_pred HhhcCCCcccchhhhHHHHHHHHH-HHHHHHHHHHH
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFII-NIGGFLGMIFI 435 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~-~iGg~iap~I~ 435 (850)
.|..| +.+++..+.++... .+|+.+++++.
T Consensus 313 ~~~~~-----~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 313 LDEFP-----HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred hcccc-----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66653 45777777766543 45565555554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-06 Score=92.75 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFY-ALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~-i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++......++....++...++++.|+.+ +|++..+.+.+..+.. +...++.+++|+++||+ |
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g-------------- 273 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-N-------------- 273 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-h--------------
Confidence 35555666667788888899999999987 9999999998887655 56778889999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcc----cCChHHHHHHHHHHHHHHhhchhh
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL----ALPTIKTTLLGLIFIGIGTGGIKP 394 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l----~~~~~~lliialil~glG~g~~~~ 394 (850)
||+.+..+.++..++..+..+...... ..++...+..+.++.+++.+...+
T Consensus 274 -------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (356)
T TIGR00901 274 -------------------------ILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTV 328 (356)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 777777777655554443332110000 002334555566667888888899
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHH
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIIN 425 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~ 425 (850)
...++..|.+| +++|++.++.++...+
T Consensus 329 ~~~~~~~~~~p----~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 329 AFVAFLSKLSN----PKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcC----CCccHHHHHHHHHHHh
Confidence 99999999998 7889999998877654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-06 Score=94.79 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+...++..++.....+...++.+.|.+..+| +....+.+..+..++..++.+++++++||+ |
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g-------------- 294 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-S-------------- 294 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--------------
Confidence 667777777777777777776766655554544 455566666666688888999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++.++.++..++.+...+.. .....+...+++..++.+++.+...+..++
T Consensus 295 -------------------------kk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~g~~~~~~~~~~~a 347 (473)
T PRK10429 295 -------------------------RRILWAGASIFPVLSCGVLLLMG--LAAPHNALLIVIAGILLNIGTALFWVLQVI 347 (473)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888777765554544432211 111233455566666778888888888999
Q ss_pred HHHhhcCC---CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCV---PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~---p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+++|..+. +..+++.+..++...+..-+|..+++.+.|++.+..|
T Consensus 348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999641 1234455667888888889999999999999988766
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-06 Score=95.91 Aligned_cols=140 Identities=15% Similarity=0.066 Sum_probs=93.6
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceeh
Q psy1432 268 DVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347 (850)
Q Consensus 268 ~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v 347 (850)
+.++.+..... .+..++..++.+++++++||+ | ||++
T Consensus 351 ~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~-g---------------------------------------rr~~ 387 (505)
T TIGR00898 351 GNLGGNIYLDL---FISGLVELPAKLITLLLIDRL-G---------------------------------------RRYT 387 (505)
T ss_pred cccCCChHHHH---HHHHHHHHHHHHHHHHHHHHh-C---------------------------------------CHHH
Confidence 34555543333 334456677888999999998 9 8888
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHH
Q psy1432 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIG 427 (850)
Q Consensus 348 ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iG 427 (850)
+.++.++.+++.++..+. + ........+..++.+.+.++..+...++.+|.+| .+.|+.+.++.+....+|
T Consensus 388 ~~~~~~~~~~~~l~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----~~~r~~~~g~~~~~~~ig 458 (505)
T TIGR00898 388 MAASLLLAGVALLLLLFV--P---VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP----TVVRNLGVGVCSTMARVG 458 (505)
T ss_pred HHHHHHHHHHHHHHHHHc--C---CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc----HHHHhhhHhHHHHHHHHH
Confidence 877777655555544432 1 1111233333444456666667888899999998 788999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 428 GFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 428 g~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
+.++|.+.+ +.+. ++...+.+.+++.+++.+.
T Consensus 459 ~~i~p~i~~-~~~~--------~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 459 SIISPFLVY-LGEK--------WLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHhHHHH-HHHH--------HHhhHHHHHHHHHHHHHHH
Confidence 999999998 4433 2455666655555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-05 Score=85.66 Aligned_cols=134 Identities=12% Similarity=0.091 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccc
Q psy1432 254 SFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333 (850)
Q Consensus 254 ~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (850)
..+.+..+.|.|+.+++|++..+.+.+.....++..++.+++|+++||+ |
T Consensus 218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g----------------------------- 267 (392)
T PRK10473 218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-K----------------------------- 267 (392)
T ss_pred HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----------------------------
Confidence 3344556678888889999999999999999999999999999999998 9
Q ss_pred ccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchh
Q psy1432 334 GAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYL 413 (850)
Q Consensus 334 ~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r 413 (850)
||+.+..+.++..++.++..+.. .....+++..+.+.|.+...+. .+..+..| . +++.
T Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~--~-~~~~ 325 (392)
T PRK10473 268 ----------PRTLMLTSQVLFLAAGITLALSP-------SHAVSLFGITLICAGFSVGFGV--AMSQALGP--F-SLRA 325 (392)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhcc--C-cccc
Confidence 78888777776666665555431 1122333333434443333222 23334444 1 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 414 ERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 414 ~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.+.+. ..++..+++.+++++.+..|
T Consensus 326 g~~~~~----~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 326 GVASST----LGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred cHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 333333 34555666667777776643
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-05 Score=87.09 Aligned_cols=136 Identities=16% Similarity=0.023 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccc
Q psy1432 254 SFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333 (850)
Q Consensus 254 ~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (850)
........++.|+.+.+|++..+.+.+.....++..++.++.+++.||. +
T Consensus 220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~----------------------------- 269 (393)
T PRK11195 220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-T----------------------------- 269 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-----------------------------
Confidence 3344445667888889999999999999999999999999999999987 7
Q ss_pred ccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchh
Q psy1432 334 GAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYL 413 (850)
Q Consensus 334 ~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r 413 (850)
+++++..+.+ ..++.++..+. ++.....+...+.|++.+...++..+...+..| ++..+
T Consensus 270 ----------~~~~~~~g~~-~~~~~~~~~~~-------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~---~~~~~ 328 (393)
T PRK11195 270 ----------VLRVLPAGIL-MGLVVLLMALQ-------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGH---VLVGA 328 (393)
T ss_pred ----------ccchHHHHHH-HHHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc---ccccc
Confidence 6666655543 22222222221 223445556667788888777778888877543 23347
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 414 ERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 414 ~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
+++++..+...++|..++..+.+.+..
T Consensus 329 g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 329 GHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886643
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.3e-06 Score=94.30 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
..+.+..++...++..++-.....+..+.+-+.-|++..++.++......+..++++++.++-||+ |
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-g------------ 333 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-G------------ 333 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence 345566666677776666655555566666677899999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccC-ChHH-HHHHHHHHHHHHhh-chh
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLAL-PTIK-TTLLGLIFIGIGTG-GIK 393 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~-~~~~-lliialil~glG~g-~~~ 393 (850)
||+.++.+..+..+..+++.......-.. +.+. ..+.+.++..++.+ +..
T Consensus 334 ---------------------------RRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 334 ---------------------------RRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred ---------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999887777776666543221111 1111 12334444333333 235
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
|..+-+.+|+|| ++.|..++++......+..++-.+....+.+.+|
T Consensus 387 pi~~fi~aELf~----~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g 432 (485)
T KOG0569|consen 387 PIPWFIGAELFP----QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG 432 (485)
T ss_pred chhHHHHHHhCC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778889999998 6778888887777666666666666677777744
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-08 Score=115.47 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=2.7
Q ss_pred hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccc
Q psy1432 253 FSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPI 332 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (850)
....++.....+-++++++++.+++|++.+.+-++..+..++..++++|- -
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-h---------------------------- 66 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-H---------------------------- 66 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C----------------------------
Confidence 66666666777888999999999999999999999999999999988775 4
Q ss_pred cccccccccccceehhhHHHHHHHHHHHHHHHhhhhcc-------c------------C---------------------
Q psy1432 333 IGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTL-------A------------L--------------------- 372 (850)
Q Consensus 333 ~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l-------~------------~--------------------- 372 (850)
|-|.+-.++++.++|.++.++|-+..- . .
T Consensus 67 -----------rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 135 (539)
T PF03137_consen 67 -----------RPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSS 135 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------CcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccc
Confidence 555666777777777777776632110 0 0
Q ss_pred ---ChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--
Q psy1432 373 ---PTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGG-- 447 (850)
Q Consensus 373 ---~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~-- 447 (850)
..+.+++++.++.|+|...+++...+++=|..+ ++......++++....+|-++|-++++...+..-+++.
T Consensus 136 ~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~----~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~ 211 (539)
T PF03137_consen 136 SLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS----KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVP 211 (539)
T ss_dssp ----------------SSS-------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHhccccCCccceeeeeccccc----cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccc
Confidence 013567788888889988889999999989886 66677778888888888888888888766532111110
Q ss_pred -------------CccchHHHHHHHHHHHHHHHHHHHhcccccc
Q psy1432 448 -------------ESCYALGFVVPAVLMVLALVMFVVGKPMYTI 478 (850)
Q Consensus 448 -------------~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~ 478 (850)
...|..+|++.+.+.++..+.+++..|..++
T Consensus 212 ~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 212 PDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp --------------------------------------------
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 0258899998888777776666665444443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-05 Score=88.70 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.-|.+..-.-..+..+|.+..|+|.++. +.|+|..+++.+.+...+......+++-++++|...
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n--------------- 272 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN--------------- 272 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 3555655566789999999999999997 579999999999999999999999999999999722
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
+|+.......++.+|.+.+.+. | . ...+...+++|+|.|+..|....+
T Consensus 273 ------------------------~r~~~~~~~~~~l~G~~G~~~~--P----~--~~~~lw~~llG~G~G~~F~laL~l 320 (395)
T COG2807 273 ------------------------QRPLVVLALLLMLVGLVGLLLA--P----G--QLPILWALLLGLGQGGAFPLALTL 320 (395)
T ss_pred ------------------------cchHHHHHHHHHHHHHHHHHHh--h----h--hHHHHHHHHHhCccchHHHHHHHH
Confidence 6777777777777777666553 1 1 122222578899999999999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAV 460 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~ 460 (850)
+.+-.. +.++.++.++..+-.+.+=..++|.+.|++.+.+| +|...++.-+.
T Consensus 321 i~~rs~---~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g------sw~~~~~~l~~ 372 (395)
T COG2807 321 ILLRSS---DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG------SWSAPLVLLAL 372 (395)
T ss_pred HHhhcC---ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC------ChHHHHHHHHH
Confidence 999885 45667888888887777777889999999999976 68877665443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=90.66 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.++..+...++............+-|.+..++. ....+.+.....+...++.+++++++||+ |
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g--------------- 292 (444)
T PRK09669 230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-D--------------- 292 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C---------------
Confidence 344444444444444433333333344434443 33334455555667778889999999998 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
||+.+.++.++..++.++..+ ...++...+++..++.+++.++..+..+++
T Consensus 293 ------------------------k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 293 ------------------------RVRAFKWTIVAFVILSALIFF-----IPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666544332222211 112344566777778889999999999999
Q ss_pred HHhhcCCCc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 400 CGEQFCVPE---QRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 400 ~ae~fp~p~---~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
.+|..+..+ .+++.+..++.+.+...+|.++++.+++++.+..|
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999985211 23345667788888999999999999999988866
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00046 Score=77.39 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=102.1
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceeh
Q psy1432 268 DVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRT 347 (850)
Q Consensus 268 ~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v 347 (850)
+..|+++.+.+.+.....+...+..++.|.++||+ | ||+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-G---------------------------------------rk~~ 101 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-G---------------------------------------RKKA 101 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------------------------------------chHH
Confidence 57899999999999999999999999999999998 9 8888
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHH-hhcCCCcccchhhhHHHHHH-HHHH
Q psy1432 348 IRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCG-EQFCVPEQRFYLERFFSVYY-FIIN 425 (850)
Q Consensus 348 ili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~a-e~fp~p~~~~~r~s~~~~~~-~~~~ 425 (850)
-+..++++.++++.-. .++...+++++++.|+++.....+--+++. |.-...-+++..+.-++... +...
T Consensus 102 cl~~cily~~scl~k~--------~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~ 173 (354)
T PF05631_consen 102 CLLFCILYSLSCLTKH--------SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNG 173 (354)
T ss_pred HHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhH
Confidence 8777877776654322 256689999999999999988877766543 43221111223333343333 2222
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 426 IGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 426 iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+-+..+.+++-++.+..+ .+-..+|..+..+.+++.+....
T Consensus 174 ~vAI~aGv~a~~l~~~~~-----~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 174 VVAIGAGVVANVLADWFG-----FGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHHHhHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHHHh
Confidence 334445556666666543 12456787777766666554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=88.64 Aligned_cols=166 Identities=10% Similarity=-0.012 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDV-LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~-LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
++......++.........++++.|+.+. .+.+...++.....+.....++.+++|+++||+ +
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~--------------- 297 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-A--------------- 297 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C---------------
Confidence 34444445554444456678899998653 356666667677777788899999999999998 8
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
+|+++.+++++..+..++..+. ++ .....++.+.++..+.++|...++
T Consensus 298 ------------------------~~~~l~i~~~~~~~~~ll~~~~-------~~-~~~~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 298 ------------------------AHKVLMAYAIIGMALCLGSIFA-------GG-HVGLYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHc-------CC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666444444443332 11 223456666778888888999999
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCccchHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP--CYGGESCYALGFVVPAVLMV 463 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g--~~g~~~~w~~~f~I~a~l~l 463 (850)
..+.++ ++. ..+.+....+ .+|+.+.|.+.|++.+..| ..| +.+.+|+++....+
T Consensus 346 ~~~~~g----~~~-~~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~---~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 346 ALKGLG----QDT-KYGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAP---AVNTSFILPLLCFA 402 (410)
T ss_pred HHhhhh----hhh-hhhHHHHHHH-HhccchHHHHHHHHHHHhcccccC---ccchHHHHHHHHHH
Confidence 999995 332 2323333333 3999999999999998531 011 36778888765444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=96.74 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++.......+..++++....+++.|.. ..|++..++..+.++..+...++.++.|+++|+. ..+
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~------------ 363 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIR------------ 363 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccc------------
Confidence 46777777788888999999999999997 8999999999999999999999999999999997 411
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
++.+..++.++.+++.+.+.+. .+...++..-+++|++.|.+.+..+.
T Consensus 364 -------------------------~~~~~~~~ll~~gl~~~~~p~~-------~~~~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 364 -------------------------ALVLFLLTLLIAGLARLFLPFA-------TTYVGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333333222221 34466777777888888888777778
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
.+.|+.+ .++...++++......++..++|.+++++.+.++ .|...|+..++.++++.+..++..
T Consensus 412 i~~~~~g----~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 412 ILVDLVG----LEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHcC----hhhcchHHHHHHHHhHHHHHcCcccceeeeeccC------CeeeehhhcChHHHHHHHHHHHhH
Confidence 8999997 7789999999999999999999999999988865 599999999988888876655543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-06 Score=90.14 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhh
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLY 320 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~ 320 (850)
++......++.....+.+.++++.|+++.+|++..+++.+..+..+...++.+++|+++||+ |
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g---------------- 289 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-G---------------- 289 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-c----------------
Confidence 44444455555566677888999999999999999999999999999999999999999998 8
Q ss_pred hhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCC-hHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 321 HIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALP-TIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~-~~~lliialil~glG~g~~~~~~~al 399 (850)
||+.+..+......+..+..+.. ..+ +....+....+.+++.|...+...++
T Consensus 290 -----------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (366)
T TIGR00886 290 -----------------------GARKLLMSFLGVAMGAFLVVLGL----VSPLSLAVFIVLFVALFFFSGAGNGSTFAL 342 (366)
T ss_pred -----------------------cchhHHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHHHHhccccchhhhc
Confidence 66666555544444433333221 111 34555555566666777777788888
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGG 428 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg 428 (850)
.++.+| +.++...+..+...++|+
T Consensus 343 ~~~~~~-----~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 343 VPHIFR-----RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred chhhch-----hhcccHHHHHHHhccCCC
Confidence 999884 478888888887777653
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.001 Score=77.08 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHH
Q psy1432 281 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNI 360 (850)
Q Consensus 281 ~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~l 360 (850)
..+-+....++.++++-+-|.+ | .|..+.+++..+..-.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~---------------------------------------~K~~lv~ga~~y~~f~~ 95 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-G---------------------------------------PKWALVIGATCYAAFPL 95 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-h---------------------------------------HHHHHHHHhHHHHHHHH
Confidence 4455556666777778888887 8 78888888774444332
Q ss_pred HHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q psy1432 361 LLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIF 434 (850)
Q Consensus 361 l~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I 434 (850)
...+ +|-..++.+-+++|+|.+..+.-...+++|... ++..++-.++.|.....+..+|.++
T Consensus 96 gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt~~st----~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 96 GFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST----RETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHHh--------cchHHHHHHHHHhhhhHHheecccceehhhcCC----hhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 2222 234788899999999999988888899999886 7888888888887776655555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00011 Score=81.05 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccc
Q psy1432 254 SFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333 (850)
Q Consensus 254 ~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 333 (850)
....+..+.+.|+.+.+|++..+.+++.....++..++.++++++.||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~----------------------------- 271 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S----------------------------- 271 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----------------------------
Confidence 3344455677888888999999999888777777777778888888887 5
Q ss_pred ccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchh
Q psy1432 334 GAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYL 413 (850)
Q Consensus 334 ~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r 413 (850)
|+... +.....++.++....... ...+...+..+.++.++|.+...|...+...|.+| +++
T Consensus 272 ----------~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~ 332 (394)
T PRK11652 272 ----------TLMWQ--SVICCLLAGLLMWIPGWF--GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-----YLA 332 (394)
T ss_pred ----------HHHHH--HHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccc
Confidence 22222 111111222221111111 11223455666677788888888999999989885 356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 414 ERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 414 ~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
+...+..+...++|+.+++.+++++...
T Consensus 333 g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 333 GTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 8888888888899999999998877544
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00037 Score=81.43 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLS-VALGNLIIICIEQLRGY-VGQAGEFFLYACLIF 808 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~-~~lG~~i~~~i~~~~~~-~~~~~~f~l~a~l~~ 808 (850)
++|..+|.=++.++-.+++..+..+|+...+||++|..++|+.+.. .++|-.+|++|.+.+.. .+..-.|..+++.++
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl 537 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACL 537 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHH
Confidence 4456666678889999999999999999999999999999998754 56677777777665544 344556777766666
Q ss_pred HHHHHHhhheee
Q psy1432 809 LDMLLFYRITKR 820 (850)
Q Consensus 809 l~~l~~~~~~~~ 820 (850)
+.++++..+.+.
T Consensus 538 ~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 538 VTLALFISIQLL 549 (618)
T ss_pred HHHHHHHHhhhh
Confidence 666666655433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=83.10 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=120.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhh
Q psy1432 247 IEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYAL 326 (850)
Q Consensus 247 ~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~ 326 (850)
..+....+.-...++...|+++.-|.+....+.+.++..+.-.+.-.+.+++--|+ |
T Consensus 215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g---------------------- 271 (400)
T PF03825_consen 215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-G---------------------- 271 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------------------
Confidence 33444444444566788898765558888888877777777777777778877777 7
Q ss_pred cccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCCh-HHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q psy1432 327 CYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPT-IKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405 (850)
Q Consensus 327 ~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~-~~lliialil~glG~g~~~~~~~al~ae~fp 405 (850)
-++++.++++.+++=..+.++...+. +. .....++..+-|+..+....+...++.+.+|
T Consensus 272 -----------------~~~ll~~a~~~~~vR~~l~a~~~~~~---~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p 331 (400)
T PF03825_consen 272 -----------------IKWLLLLALVAYAVRWLLYAYFSDPW---PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP 331 (400)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC
Confidence 66777777765544333333321110 00 1122333456788888888899999999998
Q ss_pred CCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 406 VPEQRFYLERFFSVYYFII-NIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 406 ~p~~~~~r~s~~~~~~~~~-~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
++.|.++-+++.... .+|+.+|..++|++.+..|. .+...|...+.+++++.++..+.++..
T Consensus 332 ----~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~-~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 332 ----PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA-RGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred ----ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999998765 79999999999999998441 111235666777777666666666554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00034 Score=80.27 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.+...+...++.........+...-|.+..+|... ..+.+..++.+...++.+++++++||+ |
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~-g-------------- 291 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWK-C-------------- 291 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 344444444555555555554455555555566433 345566677778888899999999998 8
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+ .+ ..+...+++..++.+++.++..+..++
T Consensus 292 -------------------------kk~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 292 -------------------------KVTIFWWTNALLAVISLAMFF--VP---MQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHH--hc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654443322222222211 11 112223344445567777777777788
Q ss_pred HHHhhcCC--Ccccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCV--PEQRFYL-ERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~--p~~~~~r-~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+.+|..+. -...+|+ +..++...+...+|.++++.+++++.+..|
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88887641 0112333 444677778889999999999999887655
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00029 Score=79.31 Aligned_cols=156 Identities=11% Similarity=-0.025 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++.......+....++.+.+++|.|+.+.+|++..+.++......++..++..+.+.+.++. +
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~-------------- 282 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-T-------------- 282 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--------------
Confidence 4566666666777777788888899999999999999999988777777777776666655443 2
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
+++.+.....+..+|.++..+.... ..++....+++..+.++|.+...|...+
T Consensus 283 -------------------------~~~~~~~~~~~~~ig~~l~~~~~~~--~~~~~~~~~~~~~l~~~G~~~~~p~~~~ 335 (413)
T PRK15403 283 -------------------------EPRFIWRAVPIQLVGLALLIVGNLL--WPHVWLWSVLGTSLYAFGIGLIFPTLFR 335 (413)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2233222222223333333322110 1122333456777778888877777765
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
..-.+. ...++++.+.++.....+..+++...+++.+.
T Consensus 336 ~al~~~-----~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 336 FTLFSN-----NLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHhccC-----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 332332 22368888888888878888888888888765
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00093 Score=71.83 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+...+.+..+.. +.|.+-.|. ..+.+.+|++.++...+.....++.++ .++.|.+.|++ |
T Consensus 4 ~l~a~~~v~~~~G-t~Y~Fs~yS-~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-g--------------- 64 (250)
T PF06813_consen 4 SLVASIWVQLCSG-TTYTFSAYS-PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-G--------------- 64 (250)
T ss_pred hHHHHHHHHHhcC-cccchhhhh-HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-c---------------
Confidence 3344444443333 445554444 456789999999999999999999987 48899999999 9
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAAL 399 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al 399 (850)
.+.++.+|++...+|..+..+........++.+.+.+...+.+.+.+.+.......
T Consensus 65 ------------------------p~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt 120 (250)
T PF06813_consen 65 ------------------------PWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVT 120 (250)
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHH
Confidence 88899999998888888877654433333455666655555556555554555566
Q ss_pred HHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1432 400 CGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIP 436 (850)
Q Consensus 400 ~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~ 436 (850)
..+.|| +.||.+.++.-....+++.+-..+..
T Consensus 121 ~~~NFP-----~~RG~vvgilk~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 121 CVRNFP-----RSRGTVVGILKGFFGLSAAIFTQIYS 152 (250)
T ss_pred HHHhCc-----cccCceehhhhHHHHhHHHHHHHHHH
Confidence 678996 35899988877777777665444433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00037 Score=80.78 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|++...++..++...++....+.+.-|.+..+|.+................++.++...|++|+ |
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-g-------------- 300 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-G-------------- 300 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--------------
Confidence 4455555567777777777778888888888999999988888888888888899999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++.++.++..++.++..+.. .++..++++..++.++|.+...+..++
T Consensus 301 -------------------------kk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 301 -------------------------KKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHHHHhhccccccHH
Confidence 89999999888888777766542 345678888888889999999999999
Q ss_pred HHHhhcCC---CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 399 LCGEQFCV---PEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 399 l~ae~fp~---p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+++|..+- -..+++-|-.++.+.+..=+|..++-.+.+++.+..|
T Consensus 351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99988642 1223444556667777777888888888888888766
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00049 Score=62.51 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHH
Q psy1432 733 IYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQA-GEFFLYACLIFLDM 811 (850)
Q Consensus 733 ~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~-~~f~l~a~l~~l~~ 811 (850)
+.+....++.+++.+...+....+..+..|++.|+..++..+....+|..+++.+.+...+...+ +.|.+.+++.++..
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34555678888999999999999999999999999999999999999999999888876654444 56666666666666
Q ss_pred HHHhhhe
Q psy1432 812 LLFYRIT 818 (850)
Q Consensus 812 l~~~~~~ 818 (850)
+..+.+.
T Consensus 132 ~~~~~~~ 138 (141)
T TIGR00880 132 ILLAFLL 138 (141)
T ss_pred HHHhhcC
Confidence 6655543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0016 Score=64.73 Aligned_cols=147 Identities=22% Similarity=0.323 Sum_probs=101.5
Q ss_pred HHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccc
Q psy1432 261 MLSLYLRDVLKFSE--KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILA 338 (850)
Q Consensus 261 ~L~~YLt~~LGls~--~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (850)
.++.+.. ..+.+. ...+++.....+...++.++.|+++||+ |
T Consensus 24 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g---------------------------------- 67 (338)
T COG0477 24 ALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-G---------------------------------- 67 (338)
T ss_pred HHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-c----------------------------------
Confidence 4444443 444444 5788888888888888889999999999 9
Q ss_pred cccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHH
Q psy1432 339 DSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFS 418 (850)
Q Consensus 339 ~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~ 418 (850)
||+.+..+.....++.++..+... .....+.+.+...|++.+...+...++.+|.+| + ...++...+
T Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~ 134 (338)
T COG0477 68 -----RRKVLIIGLLLFLLGTLLLALAPN-----VGLALLLILRLLQGLGGGGLLPVASALLSEWFP--E-ATERGLAVG 134 (338)
T ss_pred -----chHHHHHHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--c-hhHHHHHHH
Confidence 776666665543444333333211 234667777777888888888999999999996 1 156888888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHH
Q psy1432 419 VYYF-IINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVL 461 (850)
Q Consensus 419 ~~~~-~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l 461 (850)
.... ...+|..++|.+++.+... . ..+|+..|.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 173 (338)
T COG0477 135 LVTLGAGALGLALGPLLAGLLLGA-L----LWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H----hcchHHHHHHHHHH
Confidence 8777 4678888888777777654 1 13488865555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=76.09 Aligned_cols=187 Identities=10% Similarity=0.047 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHH----HHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKD----ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~----a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
...+...++....+....+.++.|..+..+.+... .+++.++..+...+.+|+..++--++ +|++
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l-~~~~---------- 343 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRL-GRKG---------- 343 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCC----------
Confidence 33333334444555555566777877765543222 56667766667777766644433233 2110
Q ss_pred hhhhhhhhhcccccccccccccccccceeh--hhHHHHHHHHHHHHHHHhhhhcc--cCChHHHHHHHHHHHHHHhhchh
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRT--IRVFSFVYVLGNILLCLGAVPTL--ALPTIKTTLLGLIFIGIGTGGIK 393 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~v--ili~~i~~~lg~ll~al~a~p~l--~~~~~~lliialil~glG~g~~~ 393 (850)
++.+.. +.+|.++.+++.+...+...... ...+.+++++..++.++|.....
T Consensus 344 ------------------------~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~ 399 (475)
T TIGR00924 344 ------------------------KDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMIS 399 (475)
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 001222 35566666666665554311100 12466888899999999999999
Q ss_pred hHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q psy1432 394 PCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGK 473 (850)
Q Consensus 394 ~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~ 473 (850)
|+..++.++..| ++.|++.++.+.....+|..+++.+........ +|...|...++.+++..++++...
T Consensus 400 p~~~~~~~~~aP----~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 400 PLGLSWWTKIAP----QRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-------GVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 889999999999999999999888887665442 366666666655555555444443
Q ss_pred c
Q psy1432 474 P 474 (850)
Q Consensus 474 ~ 474 (850)
|
T Consensus 469 ~ 469 (475)
T TIGR00924 469 P 469 (475)
T ss_pred H
Confidence 3
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.13 Score=60.18 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRK 440 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~ 440 (850)
.-+++..|.+. .++..+.++.+..++|+|..+++.+..++.+
T Consensus 149 lFW~fandi~t----~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 149 LFWGFANQITT----IDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999997 7889999999999999999999999988764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=81.61 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHH-----------------HHHHHHhhCCCHHHHHHH--HHHHHHHHHHHHHHHHHh
Q psy1432 238 PKSIYLILTIEFCERFSFCGLRTML-----------------SLYLRDVLKFSEKDATVL--YHIFYALCYFVPIIGAIL 298 (850)
Q Consensus 238 ~r~i~~i~~~~~~~~~~~y~~~t~L-----------------~~YLt~~LGls~~~a~~i--~~i~~i~~~~~~~lgG~L 298 (850)
.|.-+....+.|..++++|+.+-.. |.++....+......-.. ..+..+..+.+.++.|++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 3445556667888999999887443 333333333222222111 233345677788999999
Q ss_pred hhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHH
Q psy1432 299 ADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTT 378 (850)
Q Consensus 299 ADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~ll 378 (850)
-||+ | ||+++..+.+++.+..+++..+..+.. ...++
T Consensus 405 verl-G---------------------------------------RKkTMal~l~~f~iflfll~~c~~rn~---~tvll 441 (528)
T KOG0253|consen 405 VERL-G---------------------------------------RKKTMALSLILFGIFLFLLTTCKTRNA---YTVLL 441 (528)
T ss_pred HHHh-c---------------------------------------chhHHHHHHHHHHHHHHHHHHhcCcch---hHHHH
Confidence 9997 9 899998888877776666555422211 01233
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy1432 379 LLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFI 435 (850)
Q Consensus 379 iialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~ 435 (850)
+.++++ ..+.+.+.+++-.|.+| ...|+.+.|.....+-+|+.++|.|+
T Consensus 442 f~araf----isg~fqvaYvYtPEVyP----TavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 442 FTARAF----ISGAFQVAYVYTPEVYP----TAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HHHHHH----HhchheEEEEecCcccc----hhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 344443 33445677888999998 78899999998888999999999999
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.9e-07 Score=104.25 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+...+....+..+..+....+...++.+..|.+.. ........+...++.+++.++.||+ |
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-G-------------- 314 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-G-------------- 314 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-c--------------
Confidence 3455555555555555554555555566667777777 2333344456667778888999998 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCC---hHHHHHHHHHHHHHHhh-chhh
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALP---TIKTTLLGLIFIGIGTG-GIKP 394 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~---~~~lliialil~glG~g-~~~~ 394 (850)
||++++.+.++..+..++++.......+.+ + ...+....+...+.+ +..+
T Consensus 315 -------------------------Rr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~~g~~~ 368 (451)
T PF00083_consen 315 -------------------------RRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS-ILSIVFLALFFAFFSLGWGP 368 (451)
T ss_pred -------------------------cccccccccccccccccccccccccccccccccc-cccceeeeeccccccccccc
Confidence 777777777655554444431111111111 1 111122222222222 3446
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSI 442 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~ 442 (850)
+.+.+.+|.|| .+.|.++.+..+....+++.++|.+.+++.+..
T Consensus 369 ~~~~~~~ElfP----t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 412 (451)
T PF00083_consen 369 LPWIYTAELFP----TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL 412 (451)
T ss_pred ccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 67788899998 788999999999988999999998888877663
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=86.02 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSF 302 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~ 302 (850)
.+|...+..+|.....|++..|+|.|+++..|+|..++..+...+.++..++.+++|+++||+
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 477788889999999999999999999987789999999999999999999999999999995
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.2e-05 Score=90.12 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-h-HHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ-A-GEFFLYACLIF 808 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~-~-~~f~l~a~l~~ 808 (850)
..|.+++.-.+.|+||+...|....++++.+|...|+.+++++++...+|..+|............ | +.|...|++.+
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~v 199 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGV 199 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHH
Confidence 446777788899999999999999999999999999999999999999998887766554444433 2 46788888988
Q ss_pred HHHHHHhhheeeeccc
Q psy1432 809 LDMLLFYRITKRYKFV 824 (850)
Q Consensus 809 l~~l~~~~~~~~~~~~ 824 (850)
+.+++...+.++..++
T Consensus 200 i~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 200 IVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHhhccCcccc
Confidence 8888888777765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=73.74 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYH 321 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~ 321 (850)
.......|+.--.=-..-+|++.|+.+..|++..+++...+.++++.+++..++-++-.|+ -
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~----------------- 300 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-K----------------- 300 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-----------------
Confidence 3333334443333334457899999998999999999999999999999998888888887 5
Q ss_pred hhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy1432 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCG 401 (850)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~a 401 (850)
..|.+...+++..+-++...+. ++ ...+.++.+.|+..+.++|...+...
T Consensus 301 ----------------------~~k~Laf~a~~~ill~~~~~l~-------~g-~v~~~~l~~ig~F~simfPTIfslal 350 (422)
T COG0738 301 ----------------------PEKYLAFYALIAILLLLAVALI-------GG-VVALYALFLIGLFNSIMFPTIFSLAL 350 (422)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHh-------cC-hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555554323223333332 22 44455667778888889999999999
Q ss_pred hhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy1432 402 EQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 402 e~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g 443 (850)
+-.| +. ++..+..-....+||.+-|.+.|++.+..|
T Consensus 351 ~~l~--~~----ts~~s~~l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 351 KNLG--EH----TSVGSGLLVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred hccC--cc----ccccceeeeeheecchHHHHHHHHHHHhhh
Confidence 9885 22 233333334556899999999999999844
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=73.26 Aligned_cols=172 Identities=8% Similarity=0.082 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeeccc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLK---FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFD 315 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LG---ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~ 315 (850)
|.+|.......+....++.+-.-.+.|.+..+. .++...|.+.++-.+.-.+...+..++-+|+ |
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g----------- 287 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-G----------- 287 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-C-----------
Confidence 455555544444444455444457778775443 4455667777888888888888899999998 9
Q ss_pred chhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhH
Q psy1432 316 ATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPC 395 (850)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~ 395 (850)
.|+.++++..+..+=.+++++. ++.+.+.+...+-++-.+.....
T Consensus 288 ----------------------------~k~~Lllag~i~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 288 ----------------------------AKNLLLLAGVIMAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hHhHHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777666655555554 34467777778888888887778
Q ss_pred HHHHHHhhcCCCcccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 396 VAALCGEQFCVPEQRFYLERFFSVY-YFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 396 ~~al~ae~fp~p~~~~~r~s~~~~~-~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
..-++++.|| ++...+...+. +++..+|..+.+.++|++.++.| ++..|++.+.+++...+.
T Consensus 333 ~fkYI~~~fd----~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-------~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 333 AFKYITAHFD----KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-------FQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHS-----GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-------cHHHHHHHHHHHHHHHHH
Confidence 8899999997 56666677664 56778999999999999999964 788888777665554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0058 Score=69.80 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=122.0
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
.+=.|--+++|++..+.+-+......+..++..+.|++..|-.|
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~------------------------------------ 273 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLG------------------------------------ 273 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------------------------------
Confidence 34467778899999999999999999999999999998875435
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHH
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVY 420 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~ 420 (850)
++++..+++....++..+..++... ++.+.+..+.+++|+|.|.+.....+.+.|+.. +.+.|.+.+..
T Consensus 274 ---~~~~a~~G~~~~~~~f~lii~a~~~----~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~----~~~aG~~mG~W 342 (403)
T PF03209_consen 274 ---KKRTAALGCLLGALAFALIILAGPL----GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTS----AGRAGLFMGAW 342 (403)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CcchhHHHHHH
Confidence 5667777777666666655554322 234788999999999999988888888888886 56678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-C--CCccchHHHHHHHHHHHHHHHHH
Q psy1432 421 YFIINIGGFLGMIFIPMIRKSIPCY-G--GESCYALGFVVPAVLMVLALVMF 469 (850)
Q Consensus 421 ~~~~~iGg~iap~I~~~I~~~~g~~-g--~~~~w~~~f~I~a~l~lvalv~~ 469 (850)
..+..++.+++-.+++.+.+-.... + ...+|...|.+-+++++++++++
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877642111 1 11458888888887777766543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0045 Score=72.06 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcc
Q psy1432 253 FSFCGLRTMLSLYLRDVLKFSE----KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCY 328 (850)
Q Consensus 253 ~~~y~~~t~L~~YLt~~LGls~----~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~ 328 (850)
..+....+.++.|+.+..+.+. ....++.+...+...+..|+.|++.||+ |+++.- ..
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~-~~---------------- 344 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKD-LS---------------- 344 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCC-CC----------------
Confidence 3344444667777764333211 1223444444456667788889999998 832100 00
Q ss_pred cccccccccccccccceehhhHHHHHHHHHHHHHHHhhh--hccc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q psy1432 329 FVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAV--PTLA-LPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFC 405 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~--p~l~-~~~~~lliialil~glG~g~~~~~~~al~ae~fp 405 (850)
.-.-+.+|.++..++.+..+.... ...+ ..+.++++...++.++|.+...|+..++..+..|
T Consensus 345 ---------------~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP 409 (489)
T PRK10207 345 ---------------MPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP 409 (489)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh
Confidence 000244555555555443322111 1111 1245667778888899999999999999999998
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 406 VPEQRFYLERFFSVYYFIINIGGFLGMIFIPMI 438 (850)
Q Consensus 406 ~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I 438 (850)
++.++.+++.++...++|+.++..++...
T Consensus 410 ----~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 410 ----QHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999899999887777654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.49 Score=54.73 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=96.3
Q ss_pred HHHHHHHHHh-hCCCHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccc
Q psy1432 260 TMLSLYLRDV-LKFSEKDATV-LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAIL 337 (850)
Q Consensus 260 t~L~~YLt~~-LGls~~~a~~-i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (850)
.++..|++.. .|++..+... +.-+..-......++...++|.+ |
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~--------------------------------- 69 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-R--------------------------------- 69 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-h---------------------------------
Confidence 4577889887 8999998763 44444445555667888999998 6
Q ss_pred ccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHH
Q psy1432 338 ADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFF 417 (850)
Q Consensus 338 ~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~ 417 (850)
-|++++++++...+..+++.+. .+...+-+.-++.|++.+ +--++.+.++-. .++++.-++.
T Consensus 70 ------Ykpviil~~~~~i~t~~lll~~-------~sv~~mq~~q~~yg~~~a----~evay~sYiys~-v~~~~yq~vt 131 (412)
T PF01770_consen 70 ------YKPVIILQALSYIITWLLLLFG-------TSVLAMQLMQFFYGLATA----AEVAYYSYIYSV-VDKEHYQKVT 131 (412)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHH----HHHHHHHHheee-cCHHHHHHHH
Confidence 5667777766544444444443 444555555555555544 444555555532 1245566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 418 SVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 418 ~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
+....+.-+|-.+|.+++-.+...-+ .++....++......++++..++
T Consensus 132 s~~raa~l~g~~~s~~lgQllvs~~~-----~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 132 SYTRAATLVGRFISSLLGQLLVSFGG-----VSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666777776666655321 35777888887766666665444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0093 Score=69.46 Aligned_cols=188 Identities=10% Similarity=0.037 Sum_probs=110.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHH--hhCCCH------HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhh
Q psy1432 248 EFCERFSFCGLRTMLSLYLRD--VLKFSE------KDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVL 319 (850)
Q Consensus 248 ~~~~~~~~y~~~t~L~~YLt~--~LGls~------~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~ 319 (850)
.+.....+|....-++.++.. ..+.+. ...+++.++..+...+..++.+++-.|. +++.
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l-~~r~------------ 347 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKM-GDRL------------ 347 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHh-CcCC------------
Confidence 335556677776667777653 111211 1245566666667777777776665555 4221
Q ss_pred hhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhc--ccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 320 YHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPT--LALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~--l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
+..+.+.++.++.+++.+++.+..... -+.-+..++.+..++.++|.+...|...
T Consensus 348 -----------------------~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~ 404 (500)
T PRK09584 348 -----------------------PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGL 404 (500)
T ss_pred -----------------------CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 034556666777777766655542110 0111245778888889999999999999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSI---PCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~---g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
++..+..| ++.|++.++.+.....+|+.++..+........ .-.....++...|...+++.++..+++++..+
T Consensus 405 s~~~~~aP----~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 405 AMVAQLVP----QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 889999999887766666666555543221100 00000012556676666555544444444443
Q ss_pred c
Q psy1432 475 M 475 (850)
Q Consensus 475 ~ 475 (850)
.
T Consensus 481 ~ 481 (500)
T PRK09584 481 K 481 (500)
T ss_pred H
Confidence 3
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.54 Score=54.70 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICI 787 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i 787 (850)
+...++...++-=+|.-.+--+...+.-|..|++.||...|.=+....+.-.+...+
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666678888888888899999999999999999887777776665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=68.16 Aligned_cols=196 Identities=13% Similarity=0.050 Sum_probs=129.7
Q ss_pred cccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhCCCH------HH----HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy1432 234 SANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRD-VLKFSE------KD----ATVLYHIFYALCYFVPIIGAILADSF 302 (850)
Q Consensus 234 ~~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~-~LGls~------~~----a~~i~~i~~i~~~~~~~lgG~LADr~ 302 (850)
.++-||.++.++..+++.-++++.+..+...|..+ .++-+. .+ ..+...++.+...+..++--++..++
T Consensus 253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999888888888774 444221 11 12333344444445555556667676
Q ss_pred CCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhh-----c------cc
Q psy1432 303 YGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVP-----T------LA 371 (850)
Q Consensus 303 lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p-----~------l~ 371 (850)
|+ ||++..++.++..++.+...+.... . +-
T Consensus 333 -g~--------------------------------------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~ 373 (477)
T TIGR01301 333 -GA--------------------------------------GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL 373 (477)
T ss_pred -cc--------------------------------------chhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 61 3566567766666665555432210 0 00
Q ss_pred CCh---HHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy1432 372 LPT---IKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGE 448 (850)
Q Consensus 372 ~~~---~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~ 448 (850)
.++ ....++...+.|+..+.....-.+++++..+ ++.++.|..+++.|....+.+.+..+..|.+....|
T Consensus 374 ~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~--~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g----- 446 (477)
T TIGR01301 374 PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS--NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG----- 446 (477)
T ss_pred CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc--ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 011 1344555566778888888888999999986 344667999999999999999999988888666644
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccc
Q psy1432 449 SCYALGFVVPAVLMVLALVMFVVGKPM 475 (850)
Q Consensus 449 ~~w~~~f~I~a~l~lvalv~~~~~~~~ 475 (850)
.+-...+.+.++.++++.+..+...|+
T Consensus 447 ~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 447 GGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 235677888888888777766555443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=73.81 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSM-KTVTIAAWQLSVALGNLIIICIEQLRGYV-GQAGEFFLYACLIF 808 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~-rg~~~gl~~~~~~lG~~i~~~i~~~~~~~-~~~~~f~l~a~l~~ 808 (850)
+++.+++.-++.|+|......++.++..+.+|++. ||.++|....+.++|..+++.+.+...+. |...-|.+++++++
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~L 237 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLL 237 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHH
Confidence 33467788899999999999999999999999766 69999999999999999999887776653 44667999999999
Q ss_pred HHHHHHhhheeeecccc
Q psy1432 809 LDMLLFYRITKRYKFVK 825 (850)
Q Consensus 809 l~~l~~~~~~~~~~~~~ 825 (850)
++.++-.++.+.++.++
T Consensus 238 ld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 238 LDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHHHHHheeCccccCc
Confidence 99999888776654433
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.033 Score=61.05 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=90.2
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccccccc
Q psy1432 264 LYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYG 343 (850)
Q Consensus 264 ~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (850)
-|+.+..|+...+.+.+..+..+...+...+.|-|+|+- |
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-G--------------------------------------- 100 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-G--------------------------------------- 100 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-c---------------------------------------
Confidence 466778899999999999998899999999999999998 9
Q ss_pred ceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH-HHHhhcCC-Ccccchh-hhHHHHH
Q psy1432 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA-LCGEQFCV-PEQRFYL-ERFFSVY 420 (850)
Q Consensus 344 Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a-l~ae~fp~-p~~~~~r-~s~~~~~ 420 (850)
||+.-..-++ ..++++++- +.|+...+++++++.|+.++......-+ +++|.-.. .-+++-. .++.-..
T Consensus 101 RKracvtyci----tYiLsCiTK----hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ 172 (454)
T KOG4332|consen 101 RKRACVTYCI----TYILSCITK----HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAV 172 (454)
T ss_pred cccceeeehH----HHHHHHHhh----cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHH
Confidence 6665433333 555566652 3356677889999999988877655544 45565420 0001111 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHH
Q psy1432 421 YFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 421 ~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lv 464 (850)
.+...+-+.++.+.+-.+++..+ . |--.+|..++....+
T Consensus 173 ffgNglvAiiaGlfgn~lvd~~s-l----GPVAPFdAAacfLai 211 (454)
T KOG4332|consen 173 FFGNGLVAIIAGLFGNLLVDTFS-L----GPVAPFDAAACFLAI 211 (454)
T ss_pred HhhccHHHHHHHHHHHHHHHHhc-c----CCCCchHHHHHHHHH
Confidence 23333444455555666666644 2 234455544433333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=74.45 Aligned_cols=134 Identities=9% Similarity=-0.083 Sum_probs=98.7
Q ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccce
Q psy1432 266 LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRY 345 (850)
Q Consensus 266 Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr 345 (850)
..+.+|+++.+.+.+.....++..++..+.+++.+|+ | .|
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~---------------------------------------~r 318 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-P---------------------------------------YR 318 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-C---------------------------------------HH
Confidence 3457999999999999998888888888888888777 7 77
Q ss_pred ehhhHHHHHHHHHHHHHHHhh-hhc--ccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 346 RTIRVFSFVYVLGNILLCLGA-VPT--LALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 346 ~vili~~i~~~lg~ll~al~a-~p~--l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
+++.++.++..++.+...+.. .+. ...++...++...++.+++.+....+..+++.+..| ++..++.++++..
T Consensus 319 ~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p----~~~egt~~al~~s 394 (468)
T TIGR00788 319 LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCP----SGCESSVFALLAS 394 (468)
T ss_pred HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCC----CCceehHHHHHHH
Confidence 788777776655544322111 011 111222233444555667777777778999999997 7789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy1432 423 IINIGGFLGMIFIPMIRKSIP 443 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g 443 (850)
..++|+.+++.+++++.+..|
T Consensus 395 ~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 395 ILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998865
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.047 Score=65.56 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLD 810 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~l~~l~ 810 (850)
+.+.+....++.|+|++...+.....+.+.+| +.||.++|++....++|+.+...+.......+..+.|++.+++.++.
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVV 197 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55677777889999999998888888999887 56999999999999999986544433222223345666677777777
Q ss_pred HHHHhhheeee
Q psy1432 811 MLLFYRITKRY 821 (850)
Q Consensus 811 ~l~~~~~~~~~ 821 (850)
.++.+.+.+..
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 77766665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=56.29 Aligned_cols=51 Identities=29% Similarity=0.415 Sum_probs=44.9
Q ss_pred HhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy1432 252 RFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYG 304 (850)
Q Consensus 252 ~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lG 304 (850)
..+.-.+..+++.|+. +.|++..+.+.+.++..+...+++|++|+++||+ |
T Consensus 13 f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~ 63 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-G 63 (77)
T ss_pred HHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
Confidence 3344456678999997 5999999999999999999999999999999999 8
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=67.95 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.+|.....++...+..++-+....+....+-+..|.+... .+...+..++..++..+++++.||+ |
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-g------------ 357 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-G------------ 357 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-c------------
Confidence 4455555555555555544444434434444566766543 4555555667777778889999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhccc----CCh-HHHHHHHHHHH-HHHhh
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLA----LPT-IKTTLLGLIFI-GIGTG 390 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~----~~~-~~lliialil~-glG~g 390 (850)
||+.++.+.+.+.++.++++........ ... ..+.++...+. .....
T Consensus 358 ---------------------------Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~ 410 (513)
T KOG0254|consen 358 ---------------------------RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAI 410 (513)
T ss_pred ---------------------------cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 9999999999888888777654322111 011 12222222222 22222
Q ss_pred chhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHH
Q psy1432 391 GIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGG 428 (850)
Q Consensus 391 ~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg 428 (850)
+..|..+.+.+|.|| .+.|+.+.++......+..
T Consensus 411 g~g~v~w~~~sEifp----~~~r~~~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 411 GWGPVPWVIVSEIFP----LRLRSKGASLAVAVNWLWN 444 (513)
T ss_pred ccccchhhhhhccCc----HhHHhhhHHHHHHHHHHHH
Confidence 334667788999998 7778877776555443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0089 Score=71.95 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------
Q psy1432 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYV----------------- 794 (850)
Q Consensus 732 ~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~----------------- 794 (850)
+..++..-++.|+|++...+.+.+++.+.+|++.|+..+|+++....+|..+++.+.+.....
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~ 251 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT 251 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 445566778999999999999999999999999999999999999999999888776644311
Q ss_pred -----chhHH-HHHHHHHHHHHHHHHhhhee
Q psy1432 795 -----GQAGE-FFLYACLIFLDMLLFYRITK 819 (850)
Q Consensus 795 -----~~~~~-f~l~a~l~~l~~l~~~~~~~ 819 (850)
+.||. |++.+++.++.++.++++-+
T Consensus 252 dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 252 DPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12443 66777777766655544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.053 Score=63.79 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHh
Q psy1432 739 YVLMSIGEVMFAIAGLHFSFTQAPRS--MKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLIFLDMLLFY 815 (850)
Q Consensus 739 yvl~gige~l~~p~~~~~~~~~aP~~--~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~~l~~l~~~ 815 (850)
..+..+|.++..+...++..+++|++ .|+.+.++.+....+|+.+++.+.+......+ ++.|.+.++.++++.+.++
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 34455677777787888999999975 79999999999999999999999887765433 4556666666666666655
Q ss_pred hhe
Q psy1432 816 RIT 818 (850)
Q Consensus 816 ~~~ 818 (850)
...
T Consensus 187 ~~~ 189 (493)
T PRK15462 187 CGN 189 (493)
T ss_pred Hhh
Confidence 433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.88 E-value=1.3 Score=51.07 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIE 788 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~ 788 (850)
+.|.+....+.-|+-.++........+.+..|++.|..++|...++-.+|..++.++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555556667777888888888899999999999999999999999988887764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=65.18 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+.....+.+.-.+++-.=.++++.|+. .+|.+.+-.+.+-.+.-+...+.+|+.|..|||+-+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~s-------------- 96 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTS-------------- 96 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceeccccccccccccc--------------
Confidence 34555555566666666666678888885 689999999999999999999999999999999822
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhh--hcc-c---C----ChHHHHHHHHHHHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAV--PTL-A---L----PTIKTTLLGLIFIGIG 388 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~--p~l-~---~----~~~~lliialil~glG 388 (850)
+|.+||+-+..+.+...++.++..+... +.+ + . .....++++..++=+.
T Consensus 97 ---------------------r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A 155 (498)
T KOG0637|consen 97 ---------------------RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVA 155 (498)
T ss_pred ---------------------ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhh
Confidence 2344666666677777777776665531 111 1 1 1234445555555555
Q ss_pred hhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1432 389 TGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIP 436 (850)
Q Consensus 389 ~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~ 436 (850)
.-...++.-++.+|+.. +++++.| +.+++-+...+|+.++-..++
T Consensus 156 ~n~~qgp~ra~L~Dl~~-~d~~~~~--Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 156 NNTLQGPCRALLADLAR-GDAKKTR--ANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhhhhHHHHHHHhcc-Chhhhhc--cchhHHHHHHhcceeeeeccc
Confidence 55667788899999996 4444444 778888888888887655554
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0017 Score=74.99 Aligned_cols=184 Identities=12% Similarity=-0.010 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHH----HHHHHHH-HHHH----HHHHHHHhhhhcCCccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATV----LYHIFYA-LCYF----VPIIGAILADSFYGRYR 307 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~----i~~i~~i-~~~~----~~~lgG~LADr~lGr~k 307 (850)
|-+.++...+..|.-..++|....+...-+. .+|+.+.+... -.+..+. .... +..++..+.|++ |
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-G--- 376 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-G--- 376 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-h---
Confidence 5577777888888888999988877655553 45654443333 1111111 1222 335566788998 9
Q ss_pred eeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHH
Q psy1432 308 TIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGI 387 (850)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~gl 387 (850)
|+.+.+.+.+++.+..++++.+.....+.. ..++.-.+.+-+
T Consensus 377 ------------------------------------Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~--Gf~v~y~l~~ff 418 (538)
T KOG0252|consen 377 ------------------------------------RKYIQLMGFFIMTIFFFVIAGPYNQLENTI--GFVVLYSLTFFF 418 (538)
T ss_pred ------------------------------------hHHHHHhhHHHHHHHHHHHcCCcccccccC--ceeehHHHHHHH
Confidence 889998888877777777666543222222 222222222234
Q ss_pred HhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 388 GTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 388 G~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
+.-+-.+......+|.|| .+.|+..-++....+=.|++++.....++.++- |-...+.+..|++.+..++++.+
T Consensus 419 ~NFGPn~ttfivpaE~FP----arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--yp~~~g~~~v~~i~~~~~~~gi~ 492 (538)
T KOG0252|consen 419 GNFGPNATTFIVPAEIFP----ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN--YPPNIGVRNVFIILAGCMLLGIL 492 (538)
T ss_pred HhcCCCceeEEeehhhch----HHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc--CCccccchHHHHHHHHHHHHhHh
Confidence 444444555677889998 899999999998888999999999999998820 00002378888888877777765
Q ss_pred HH
Q psy1432 468 MF 469 (850)
Q Consensus 468 ~~ 469 (850)
..
T Consensus 493 ~T 494 (538)
T KOG0252|consen 493 FT 494 (538)
T ss_pred ee
Confidence 43
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.17 Score=59.71 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLR 791 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~ 791 (850)
+...+...-+++|++|+... +...+++..+|++.|+++.|.++.+..+|.++++.+.++.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999 9999999999999999999999999999999999988873
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.096 Score=63.01 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHH
Q psy1432 733 IYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQA-GEFFLYACLIFLDM 811 (850)
Q Consensus 733 ~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~-~~f~l~a~l~~l~~ 811 (850)
..++...++.|+|.+.... ....+.|..|.+.|+.+.++.....-....+++.+.+.......| |.|.+.+++..+.+
T Consensus 132 ~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 132 NTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 3556667788888665554 455689999999999888777665555555667776655443343 55666666666665
Q ss_pred HHHhhhe
Q psy1432 812 LLFYRIT 818 (850)
Q Consensus 812 l~~~~~~ 818 (850)
++.+++.
T Consensus 211 vl~~~fY 217 (599)
T PF06609_consen 211 VLIFFFY 217 (599)
T ss_pred HHHHHHh
Confidence 5544443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.042 Score=64.95 Aligned_cols=162 Identities=14% Similarity=0.015 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccc
Q psy1432 258 LRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAIL 337 (850)
Q Consensus 258 ~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (850)
+.++|--++ +++|-.....|.+...-.++-.+.-++.++|-.++ |
T Consensus 390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-G--------------------------------- 434 (618)
T KOG3762|consen 390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-G--------------------------------- 434 (618)
T ss_pred HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-c---------------------------------
Confidence 334443344 45665666666666666667777778889999998 9
Q ss_pred ccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHH
Q psy1432 338 ADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFF 417 (850)
Q Consensus 338 ~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~ 417 (850)
+-+++.++.....+=.+... .+ ++.|+.+..-++.|+..+.++.+..++++...| ++-+.++-
T Consensus 435 ------Hv~v~~lgLa~~~~Rf~~~S-----~L--~n~W~vLPieilqgit~aliWaa~~sY~s~vaP----p~l~at~Q 497 (618)
T KOG3762|consen 435 ------HVNVMYLGLACNVGRFLYYS-----YL--QNPWMVLPIEILQGITHALIWAAIISYASHVAP----PGLRATAQ 497 (618)
T ss_pred ------ccceeeehhhHHHHHHHHHH-----Hh--cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC----CcchHHHH
Confidence 55555555442222222222 22 344777777888999999999999999999998 56677777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccc
Q psy1432 418 SVYYFII-NIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTI 478 (850)
Q Consensus 418 ~~~~~~~-~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~ 478 (850)
++..... .+|-++|.+|+|.+.+..+ -+..|.+.++..++.++.+....+..++
T Consensus 498 ~l~~g~f~GlG~g~GslIGG~~v~~fg-------~~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 498 GLLQGIFHGLGKGLGSLIGGFVVERFG-------ARTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHhcccCcchhhhhhhhhheeeh-------hHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 7766554 7888889999999988843 6788888887777777777666554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.23 Score=50.07 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=61.2
Q ss_pred ceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHH
Q psy1432 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFI 423 (850)
Q Consensus 344 Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~ 423 (850)
.|++++++.+.+.+-.+.... ++...++.+-++.|+|.+..+.....++.+... ++.+++-.++++..
T Consensus 66 ~K~sm~lg~~~y~~y~~~~~~--------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~----~~~~~~~~~ifw~i 133 (156)
T PF05978_consen 66 PKWSMILGSLGYAIYIASFFY--------PNSYTLYPASALLGFGAALLWTAQGTYLTSYST----EETIGRNTGIFWAI 133 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC----HHHHhhHHHHHHHH
Confidence 888998888855543222222 244778888899999999999999999988775 77888888888877
Q ss_pred HHHHHHHHHHHHHHH
Q psy1432 424 INIGGFLGMIFIPMI 438 (850)
Q Consensus 424 ~~iGg~iap~I~~~I 438 (850)
...+..+|.++.-.+
T Consensus 134 ~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 134 FQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666655444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.5 Score=56.05 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADS 301 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr 301 (850)
...-.+...+|-+....+.+.+++.++..++..++|+++++
T Consensus 36 ~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 36 LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455566689999999999999999999888888877644
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.12 Score=60.09 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
..+..|+... |++....+..-+...+....++.+..++-.|+ |
T Consensus 279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-G----------------------------------- 321 (432)
T PF06963_consen 279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-G----------------------------------- 321 (432)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-----------------------------------
Confidence 4577899876 99999999999999999999999999999998 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCC----hHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhh
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALP----TIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLER 415 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~----~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s 415 (850)
-.|+=+.+.........+ +...++....+ +...++.+.++.=+|.=++--+..-++-|..| +++|+.
T Consensus 322 ----lvr~G~~~l~~q~~~L~~-~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~----~~~Rg~ 392 (432)
T PF06963_consen 322 ----LVRAGLWSLWWQWVCLAL-CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP----ESERGA 392 (432)
T ss_pred ----chhhHHHHHHHHHHHHHH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC----HHHhhH
Confidence 444444444433332222 22233333322 33445555555557777777788888888887 788999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1432 416 FFSVYYFIINIGGFLGMIF 434 (850)
Q Consensus 416 ~~~~~~~~~~iGg~iap~I 434 (850)
+++..+...++...+...+
T Consensus 393 v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 393 VSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988888877765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=3.8 Score=47.45 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNL 782 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~ 782 (850)
....++.+|.+.+...-.++..+.+|-++++||...|+.|.+.+....+|+-
T Consensus 368 ~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~ 419 (510)
T KOG3574|consen 368 YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGN 419 (510)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCC
Confidence 4455667788888888888889999999999999999999998888777743
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0046 Score=73.21 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcC-Cccceeeeecccc
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYA-LCYFVPIIGAILADSFY-GRYRTIRVFSFDA 316 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i-~~~~~~~lgG~LADr~l-Gr~k~l~~~~~~~ 316 (850)
+.+....+...++....-++.+++|-|++.+++++..++..+..+..+ ++.++.++||++..|+- +.++.++++.+.+
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 456777778888999999999999999999999999999988876555 66778899999999872 3345555554432
Q ss_pred hhhhhhhhhhcccccccccccc---cccccc---eehhhHHHHHHHH------HHHHHHHhhhhccc-CChHHHHHHHHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILA---DSFYGR---YRTIRVFSFVYVL------GNILLCLGAVPTLA-LPTIKTTLLGLI 383 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~R---r~vili~~i~~~l------g~ll~al~a~p~l~-~~~~~lliiali 383 (850)
.+ .-+.+....+..|-....+ +.|... ....-...- +.. +........ .. ...+..+++...
T Consensus 385 ~v-~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~-Cn~~~~~~~~~a~~G~C~---~~C~~~~~~Fl~~~~ 459 (539)
T PF03137_consen 385 IV-SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCS-CNSCCSSGNGSATPGKCP---SDCCNKLIPFLILLF 459 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCC-CCCccCCCcccccCCCcC---cccccccHHHHHHHH
Confidence 22 2222233445555442221 111000 000000000 000 000000000 00 112223333333
Q ss_pred HHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q psy1432 384 FIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFII-NIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 384 l~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~-~iGg~iap~I~~~I~~~ 441 (850)
+..+..++...+.....-...| +++|.-+.|+.+... .+|..-||++.|++.+.
T Consensus 460 ~~~~~~~~~~~p~~~i~LR~V~----~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 460 ILSFFTFMSQVPSTLITLRCVP----PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHhcccchheeeeccCC----hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 3333333333333333345555 677889999888776 67888899999999886
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.041 Score=63.77 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.+...+.........||.+.+.|-.-+ ..-|+++..+|.+.....++++++..+.|.++||. .++
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~f------------ 331 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKF------------ 331 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhH------------
Confidence 4455555555555556665555443333 34688889999999999999999999999999998 522
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHH-HHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLG-NILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg-~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
|.++++......++ +.+..+. ........++....++|....++.|...
T Consensus 332 --------------------------k~~~~v~~~~~~v~~~~l~~~t----~~~~~~viv~~t~~~~g~~~~~~~Pig~ 381 (480)
T KOG2563|consen 332 --------------------------KLTTLVLYLFALVGTLMLLTCT----LFLGDSVIVFTTCGLLGFFGTGYLPIGF 381 (480)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHhh----ccCCceEehhhhHHHHHHhhcCCCCcce
Confidence 23333333322223 2222221 1112224555666667766667778777
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
.+..|..- |. . =+.-.|..+..+.+-+++=..+.+...+.
T Consensus 382 ElgvE~Ty-Pv-~--E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 382 ELGVETTY-PV-A--EGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred eeeeeecc-cc-C--CcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 77777653 11 1 13344566666666666555566655554
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.3 Score=49.41 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=60.5
Q ss_pred ceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHH
Q psy1432 344 RYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFI 423 (850)
Q Consensus 344 Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~ 423 (850)
||.....+.++..++.++.++.... ......++...+...+.+....+...+.+|++| ...|..+.+.....
T Consensus 379 R~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p----t~~r~~~~~~~~~~ 450 (521)
T KOG0255|consen 379 RRPPLFLSLFLAGIGLLLFGWLPDD----LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIP----TVVRNTAVGAISAA 450 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHH
Confidence 8888888888777777766654211 110122222222233444444566888999998 88899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1432 424 INIGGFLGMIFIPMIRK 440 (850)
Q Consensus 424 ~~iGg~iap~I~~~I~~ 440 (850)
..+|+.++|.+......
T Consensus 451 ~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 451 ARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998765554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.25 Score=54.97 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHH
Q psy1432 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRS---MKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLI 807 (850)
Q Consensus 732 ~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~---~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~ 807 (850)
...+.....+.++|.++.=|....+..+|++++ .|......+..+.++|+.++..+.+...+... +..|.+.++.+
T Consensus 33 ~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~ 112 (372)
T PF00854_consen 33 LGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM 112 (372)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH
Confidence 345666777889999999999999999999876 46667777889999999999877776665444 55788888888
Q ss_pred HHHHHHHhhheeeeccc
Q psy1432 808 FLDMLLFYRITKRYKFV 824 (850)
Q Consensus 808 ~l~~l~~~~~~~~~~~~ 824 (850)
+++++.|+.-.++|+.+
T Consensus 113 ~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 113 LLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHCCCCTT--S
T ss_pred HHHHHHHHhCCcCCcCc
Confidence 99998888877777665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.24 Score=60.76 Aligned_cols=92 Identities=13% Similarity=0.234 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---------------
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRG--Y--------------- 793 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~--~--------------- 793 (850)
.+..++..-++.|+|+....+.+.+|+-+-+-++.-...+|+.+....+|-++|.++.++.. +
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 44456677789999999999999999999999999999999999999999888877665321 0
Q ss_pred --cchhH-HHHHHHHHHHHHHHHHhhheeeec
Q psy1432 794 --VGQAG-EFFLYACLIFLDMLLFYRITKRYK 822 (850)
Q Consensus 794 --~~~~~-~f~l~a~l~~l~~l~~~~~~~~~~ 822 (850)
.|.|| -|++.+.+.++..+.++++=|+..
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 12355 488888888888887777655544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.3 Score=48.00 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLD 810 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~l~~l~ 810 (850)
+.|.+.....+.+.+......+...-..+.+|+ .||.+.|+.-...++++.+-..+.......+...+..+.+....+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v 173 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV 173 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 555665555566666666666667777789986 5999999999999999999888876666656566666677666655
Q ss_pred HHHHhhheeee
Q psy1432 811 MLLFYRITKRY 821 (850)
Q Consensus 811 ~l~~~~~~~~~ 821 (850)
.++...+.|..
T Consensus 174 ~l~~~~~vr~~ 184 (250)
T PF06813_consen 174 CLVAMFFVRPV 184 (250)
T ss_pred HHHHhhheecc
Confidence 55554555543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.45 Score=56.03 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHH
Q psy1432 734 YMVPQYVLMSIGEVMFAIAGLHFSFTQAPRS--MKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLIFLD 810 (850)
Q Consensus 734 ~li~~yvl~gige~l~~p~~~~~~~~~aP~~--~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~~l~ 810 (850)
.+....++.++|.+++=|...++..++.|++ .|..+.+++..+.++|+.+++.+.++.....+ +..|.+.++-+.++
T Consensus 119 gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~g 198 (498)
T COG3104 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIG 198 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4556667778999999999999999999853 26677888888999999999999998877655 45688888888988
Q ss_pred HHHHhhheeeecccc
Q psy1432 811 MLLFYRITKRYKFVK 825 (850)
Q Consensus 811 ~l~~~~~~~~~~~~~ 825 (850)
++.|+..-|+++...
T Consensus 199 l~~f~~~~r~~~~~~ 213 (498)
T COG3104 199 LVIFLLGRRHVKGIG 213 (498)
T ss_pred HHHHHHccchhcCCC
Confidence 888888776665443
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.62 Score=54.59 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 262 LSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGA-ILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 262 L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG-~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
++.|+...+|++..+.+...+.......++..+.. .+.-.+ |
T Consensus 264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~------------------------------------ 306 (463)
T KOG2816|consen 264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-G------------------------------------ 306 (463)
T ss_pred EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------------------------------------
Confidence 45678888999999999999999999999998777 555554 8
Q ss_pred cccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHH
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVY 420 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~ 420 (850)
-++++..|.+.-.++.+..+++ .+.++++.+..+.++. +...|...++.+-+.. ++.+|+++++.
T Consensus 307 ---~~~~i~lGl~~~~~~~~~~af~-------~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~----~~e~g~v~~~i 371 (463)
T KOG2816|consen 307 ---EKRLISLGLLSEFLQLLLFAFA-------TETWMMFAAGVVVALA-GIVFPAIRAFASILVS----PEEQGKVFGII 371 (463)
T ss_pred ---hhhHhhHHHHHHHHHHHHHHHh-------ccchhhhHHHHHHHhh-cchhHHHHhHHHhhcc----cccccchhhHH
Confidence 5557777777667777777765 2235666665555443 4456888888888886 77899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy1432 421 YFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 421 ~~~~~iGg~iap~I~~~I~~~ 441 (850)
...-.+.++++|.+-+-+...
T Consensus 372 s~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 372 SGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHhhhhhHHHHHHHHHH
Confidence 999999999998887766443
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.3 Score=51.09 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLYL-RDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~YL-t~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++..++...+-..-.|....+.+.++ ...+|++..|.|-+.+.-.+.+.+.+..-+...||..|
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~-------------- 326 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG-------------- 326 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc--------------
Confidence 445555444443333333334444444 46799999999999888666666666655555555432
Q ss_pred hhhhhhhhccccccccccccccccccee-hhhHHHHHHHHHHHHHHHhhhhcc-cCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYR-TIRVFSFVYVLGNILLCLGAVPTL-ALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~-vili~~i~~~lg~ll~al~a~p~l-~~~~~~lliialil~glG~g~~~~~~ 396 (850)
.-+ .+..+.+ ++.+++..+ .......+.++..+..+..+...+|.
T Consensus 327 -------------------------~~~a~l~~~l~--------~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~L 373 (451)
T KOG2615|consen 327 -------------------------NIKAVLLFSLL--------LIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCL 373 (451)
T ss_pred -------------------------chhhHHHHHHH--------HHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHH
Confidence 111 1111111 112221111 11233677788888888877788999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
..+.....| +.+||...|+....+.++=.+||.+.|.+..+
T Consensus 374 t~Lv~~~~~----~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 374 TSLVHKYGP----QSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHhcCC----cccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 999988887 88999999999999999999999999988765
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.3 Score=49.03 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH----HHHhhc-----cc-hhH--
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICI----EQLRGY-----VG-QAG-- 798 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i----~~~~~~-----~~-~~~-- 798 (850)
..+++...+++.|+|.+..+ ..-.|.++..-.+.|.++++....+..+|..+|+.+ .++... ++ .++
T Consensus 129 ~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y 207 (488)
T KOG2325|consen 129 VKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY 207 (488)
T ss_pred hHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec
Confidence 45688889999999866544 445677776656667777777766666666666654 332211 11 111
Q ss_pred --HHHHHHHHHHHHHHHHhhheeeec
Q psy1432 799 --EFFLYACLIFLDMLLFYRITKRYK 822 (850)
Q Consensus 799 --~f~l~a~l~~l~~l~~~~~~~~~~ 822 (850)
.=++.+.+.++..++.+...+|..
T Consensus 208 Tap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 208 TAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred chHHHHHHHHHHHHHHHHHhheeecc
Confidence 234556666667777777777644
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=91.13 E-value=36 Score=39.72 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 731 KLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIE 788 (850)
Q Consensus 731 s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~ 788 (850)
+-+|.+....++|+..|-.......+..+..|++.+-.+-.+..+....|-..|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3467777778899999999999999999999999999988888888888888877663
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.07 E-value=41 Score=40.25 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1432 395 CVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKS 441 (850)
Q Consensus 395 ~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~ 441 (850)
.-+.+.-|++. .++..++.+.++...|++..++..+..++.+.
T Consensus 168 lFw~faNeitt----~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITT----IEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhh----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888886 78899999999999999999999999888764
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=90.37 E-value=4.5 Score=48.86 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHH
Q psy1432 541 LPLFWSLFDQLGSSWTFQAARTDS-QIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIA 619 (850)
Q Consensus 541 ~ilf~~~~~q~~s~l~~~a~~~~~-~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~ 619 (850)
..+.|..+.+..+.+..++..+.. +..++.+..+...+.+.+.++++.+....+.++. ..-...+.++-++.
T Consensus 194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~-------p~gsp~t~i~~Vlv 266 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKK-------PRGSPKTRIGQVLV 266 (571)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeC-------CCCCchhHHHHHHH
Confidence 467888888899988888877655 3456777778888888888888876665433221 11114455666666
Q ss_pred HHHHHHHH
Q psy1432 620 GFAFISAG 627 (850)
Q Consensus 620 ~ls~l~~a 627 (850)
+...-.-+
T Consensus 267 aa~~k~~~ 274 (571)
T KOG1237|consen 267 AAAFKRKA 274 (571)
T ss_pred HHHHHHhc
Confidence 55554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=89.79 E-value=8.1 Score=44.67 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q psy1432 736 VPQYVLMSIGEVMFAIAGLHFSFTQA---PRSMKTVTIAAWQLSVALGNLIIICIEQLRGYV-GQAGEFFLYACLIFLDM 811 (850)
Q Consensus 736 i~~yvl~gige~l~~p~~~~~~~~~a---P~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~-~~~~~f~l~a~l~~l~~ 811 (850)
....++..+|..+.-.+.-+.+.|.+ |.+ ||..++.......+|+.++..+.+..... +..+.|.+.+.+..+..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 34456677888888888888777766 445 88899998999999999998887655543 33455666666666665
Q ss_pred HHHhhheee
Q psy1432 812 LLFYRITKR 820 (850)
Q Consensus 812 l~~~~~~~~ 820 (850)
+..+.+..+
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=88.51 E-value=2.6 Score=38.64 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccc
Q psy1432 261 MLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADS 340 (850)
Q Consensus 261 ~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (850)
-+...+.++.++|..+++++.+..+++..++.++..++.++. .
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~------------------------------------ 55 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-R------------------------------------ 55 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c------------------------------------
Confidence 455667889999999999999999999999999999988876 5
Q ss_pred cccceehhhHHHHHHHHHHHHHHHh
Q psy1432 341 FYGRYRTIRVFSFVYVLGNILLCLG 365 (850)
Q Consensus 341 ~~~Rr~vili~~i~~~lg~ll~al~ 365 (850)
+++.+..+.+...+..+.++++
T Consensus 56 ---~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 56 ---PRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666666666665
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=83.21 E-value=1e+02 Score=36.14 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 733 IYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICI 787 (850)
Q Consensus 733 ~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i 787 (850)
++.+...+++|+..|.+......+..+..+++.|..+..+..++-.+|-.+|+.+
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556888999999999999999999999999999999998888888888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 850 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-10 | ||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-07 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-72
Identities = 112/452 (24%), Positives = 186/452 (41%), Gaps = 91/452 (20%)
Query: 230 KEMTSANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCY 289
+ + +P+ I I+ E CERFSF G+R +L+ +L L S
Sbjct: 3 SPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSI--------------- 47
Query: 290 FVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIR 349
L + A ++H F YF P++G +AD F+G+Y TI
Sbjct: 48 -----PEELRGA-------------VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89
Query: 350 VFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQ 409
S +Y +G+ L + GL I +G+GGIKP V++ G+QF +
Sbjct: 90 WLSLIYCVGHAFLAIFEHSVQGF------YTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143
Query: 410 RFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMF 469
++ F ++YF IN G F + +P++ K+ A+ F +P VLM +A V F
Sbjct: 144 S-LAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------GAAVAFGIPGVLMFVATVFF 195
Query: 470 VVGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSP------------------------ 505
+G+ Y P+ FL + +L K+
Sbjct: 196 WLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTL 255
Query: 506 -----------------YQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLF 548
+ L+ A + + +++VL IL +F + FWSLF
Sbjct: 256 GIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLF 315
Query: 549 DQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENP 608
DQ S+W QA + P MQ ++P+L ++LIP + +YPA++++ +
Sbjct: 316 DQKASTWILQAND---MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA 372
Query: 609 LRRMVCGGCIAGFAFISAGYVELNLQENPPES 640
LR+M G I G ++I G ++L + S
Sbjct: 373 LRKMGAGIAITGLSWIVVGTIQLMMDGGSALS 404
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 725 SPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLII 784
G + + + + Y L++ GEV+ + GL F+++QAP++MK ++ W LSV +GNL +
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWV 457
Query: 785 ICIEQL------------RGYVGQAGEFFLYACLIFLDMLLFYRITKRYKFVKMQLDESS 832
+ G A + F +A L ++F + Y+ +
Sbjct: 458 LLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQATG 517
Query: 833 S 833
S
Sbjct: 518 S 518
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-34
Identities = 80/421 (19%), Positives = 144/421 (34%), Gaps = 97/421 (23%)
Query: 238 PKSIYLILTIEFCERFSFCGLRTMLSLYLRDV-----LKFSEKDATVLYHIFYALCYFVP 292
P + + E ERFS+ G+R +L Y+ + L + A + I+ ++ Y
Sbjct: 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG 71
Query: 293 IIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFS 352
IG +AD G +
Sbjct: 72 TIGGFVADRIIGARPAV------------------------------------------- 88
Query: 353 FVYVLGNILLCLGAVPTLALPTIKTTL-LGLIFIGIGTGGIKPCVAALCGEQFCVPEQRF 411
G +L+ LG + LALP + L +I I IGTG +KP V+ L G + ++R
Sbjct: 89 ---FWGGVLIMLGHI-VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR- 143
Query: 412 YLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471
+ FS++ F IN+G F+ + + +++ G Y + F + A+ M + L+++
Sbjct: 144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEA---AG----YHVAFSLAAIGMFIGLLVYYF 195
Query: 472 GKPMY--------TIRCPKKNIILQFLKCMFYSLS------------------KKLSSSP 505
G T + + +K +
Sbjct: 196 GGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI 255
Query: 506 YQKKAHWLDYAEDEYSPRLISDMKTVLAILFV-FIPLPLFWSLFDQLGSSWTFQAAR-TD 563
+A S ++ S + FI LFW++ +Q AA D
Sbjct: 256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD 315
Query: 564 SQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAF 623
S F Q ++P+ ++ P F ++ A K + + + G AG +F
Sbjct: 316 SSWFP----VSWFQSLNPLFIMLYTPFF-AWLWTAWKKNQP--SSPTKFAVGLMFAGLSF 368
Query: 624 I 624
+
Sbjct: 369 L 369
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 16/91 (17%), Positives = 44/91 (48%)
Query: 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLR 791
+++V + L+ +GE++ + GL + AP++ + ++ W LS ++G+ + + L
Sbjct: 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445
Query: 792 GYVGQAGEFFLYACLIFLDMLLFYRITKRYK 822
+ F + + ++ ++KR +
Sbjct: 446 NAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 54/400 (13%), Positives = 103/400 (25%), Gaps = 122/400 (30%)
Query: 33 DVSQDLLSYQQDITPFLRKPKLVLINTLPCVVSVVNDIT--YLDEMESGDILTYANVTQG 90
+ + Y+ DI ++ C V D+ L + E I+ + G
Sbjct: 10 ETGEHQYQYK-DILSVFEDA---FVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 91 NY-TFNTIAPRDCGTIFFDKKEDCAKTFTI-ISQPN----TDAVVIMSIQNKKLDINFYQ 144
F K+E+ + F + + N + Q + Y
Sbjct: 64 TLRLF---------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYI 113
Query: 145 ESFLPTSGSNKP-------------QLKIIAMNLNHKHDYKIRLTGKLKSEKS---LEVS 188
E N+ +L+ + L + + + G L S K+ L+V
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVC 171
Query: 189 KQEHAKTFEGVPVEYGMN-------------------QIDVVLKDNLDNSSDIPVNLSLM 229
+ + + +N QID D+SS+I + + +
Sbjct: 172 LSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 230 KE-----MTSANYPKSIYLIL----TIEFCERFSF-CGLRTMLS---------------- 263
+ + S Y L+L + F+ C + +L+
Sbjct: 231 QAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTT 287
Query: 264 -LYLRDVLK-FSEKD-----ATVLYHIFYAL----CYFVP----IIGAILAD-----SFY 303
+ L + + L L P II + D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 304 GRY------RTIRVF--SFDATVLYHIFYALCYF---VPI 332
I + +F L F I
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 100/644 (15%), Positives = 186/644 (28%), Gaps = 204/644 (31%)
Query: 231 EMTSANYP-KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATV--------LY 281
E Y K I + F + F + + +L E D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 282 HIFYALC--------YFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPII 333
+F+ L FV +L ++ I+ +++ ++
Sbjct: 66 RLFWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMY---------- 112
Query: 334 GAILADSFYGR-YRTIRVFS--FVYVLGNILLCLGAVPTLALPTIKTTLLGL---IFIGI 387
R Y +VF+ V L L ++ LL L + I
Sbjct: 113 -----IEQRDRLYNDNQVFAKYNVSRLQPYL------------KLRQALLELRPAKNVLI 155
Query: 388 -GTGGI-KPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCY 445
G G K VA + V + + F +++ +N+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKV-QCKM----DFKIFW--LNLK------------------ 190
Query: 446 GGESCYALGFVVPAVLMVLALVMFVVGKPMYTIRC-PKKNIILQF--LKCMFYSLSKKLS 502
+C + P ++ + + P +T R NI L+ ++ L + L
Sbjct: 191 ---NCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLK 239
Query: 503 SSPYQKKAHWLDYAEDEYSPRLISDM----KTVLAILFVFIPLPLFWSLFDQLGS----- 553
S PY+ L + + + + K +L F + D L +
Sbjct: 240 SKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFK--------QVTDFLSAATTTH 288
Query: 554 ------SWTFQAARTD---SQIFGIHI--LPDQMQVISPM-LSLI------LIPLFDNCI 595
S T + LP ++ +P LS+I + +DN
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 596 YPALDKI-RILE------NP--LRRMVCGGCIAGFA-F-----ISAGYVEL---NLQENP 637
+ DK+ I+E P R+ + F I + L ++ ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 638 PESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEV 697
+ + + + K S + + L L N +
Sbjct: 404 VMVVVN-KLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHR------------- 447
Query: 698 KNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYV---LMSIGE----VMFA 750
SI ++ NI F L P + Y ++ L +I +F
Sbjct: 448 ------SIVDHYNIPKTFDSDD----LIPPYLDQYFY---SHIGHHLKNIEHPERMTLFR 494
Query: 751 IAGLHFSFTQAP-RSMKTVTIAAWQLSVALGNLIIICIEQLRGY 793
+ L F F + R T AW S ++ N + QL+ Y
Sbjct: 495 MVFLDFRFLEQKIRHDST----AWNASGSILNTLQ----QLKFY 530
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-04
Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 147/459 (32%)
Query: 473 KPMYTIRC------PKKNIILQ----FLK-------CMFYSLSKKLSSSPYQKKAHWLDY 515
+P +R P KN+++ K C+ Y + K+ K WL+
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLNL 189
Query: 516 AEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQ 575
SP + L +L L Q+ +WT ++ + + IH + +
Sbjct: 190 KNCN-SPETV------LEML---------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 576 MQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVC---------GGC--------I 618
++ L+ ++NC L +L N V C
Sbjct: 234 LR------RLLKSKPYENC----LL---VLLN-----VQNAKAWNAFNLSCKILLTTRFK 275
Query: 619 AGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLS---FMGN-RALFLTG 674
F+SA ++ + T E + +K + L N R L +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 675 ----DRTNR-KNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRT 729
D N ++ N ++ SS+ + + ++F +L + P
Sbjct: 335 ESIRDGLATWDNWKHVNC-------DKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPS-- 384
Query: 730 VKLIYMVPQYVL------MSIGEVMFAIAGLH-FSFTQAPRSMKTVTIAAWQLSV----- 777
+P +L + +VM + LH +S + T++I + L +
Sbjct: 385 AH----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 778 ---ALGNLII-------------ICIEQLRGY-----------VGQAGEFFLYACLIFLD 810
AL I+ + L Y + L+ ++FLD
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLD 499
Query: 811 MLLFYRITKRYKFVKMQLDESSSLLVPGKGKNDILFNLN 849
++F++ ++ S+ + L L
Sbjct: 500 ----------FRFLEQKIRHDSTAWNASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 44/292 (15%), Positives = 86/292 (29%), Gaps = 74/292 (25%)
Query: 55 VLINTLPCVVSVVNDITYLDEMESGDILTYANVTQGNYTFNTIAPRDCGT------IFFD 108
L +S+ + L E +L + + T I +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL--DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 109 KKEDCAKTFTIISQPNTDAV--VI-MSIQNKKLDINFYQESF-----LPTSGSNKPQ--L 158
D T+ N D + +I S+ L+ Y++ F P ++ P L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFP-PSAHIPTILL 392
Query: 159 KII-----------AMNLNHK---------------HDYKIRLTGKLKSEKSLE---VSK 189
+I +N HK + L KL++E +L V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 190 QEHAKTFE----GVPVE---------YGMNQIDVVLKDNLDNSSDIPVNLSLMK-----E 231
KTF+ P + + I+ + + + ++ ++ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 232 MTSANYPKSIY-LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYH 282
T+ N SI + ++F + + C + +L F K L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLIC 561
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.92 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.81 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.78 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.34 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.12 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.92 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.82 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.6 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.74 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=288.01 Aligned_cols=444 Identities=31% Similarity=0.596 Sum_probs=289.5
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceee
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLK------FSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIR 310 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LG------ls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~ 310 (850)
++|.++..+...++..+++|++..+++.|+++++| ++..+++++.+++.++..++.+++|+++||++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------ 83 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------ 83 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 55677888889999999999999999999999999 999999999999999999999999999999768
Q ss_pred eecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhh
Q psy1432 311 VFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTG 390 (850)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g 390 (850)
||+++.++.++..++.++..+.. .+...+++++++.|++.+
T Consensus 84 ---------------------------------~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 84 ---------------------------------KYNTILWLSLIYCVGHAFLAIFE------HSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp ---------------------------------SHHHHHHHHHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------chHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhcc
Confidence 88999888888887777766641 156788889999999999
Q ss_pred chhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 391 GIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 391 ~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+..++..++++|.+| +.++.++.+.+++++...++|+.++|.+++++.+.. +|+..|++.+++.+++++.++
T Consensus 125 ~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 125 GIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 222222355666689999999999999999998763 499999998887777666655
Q ss_pred HhcccccccCCchhhHHHHHHHHHHhhhhcccCCc---------------------------------------hhhhhh
Q psy1432 471 VGKPMYTIRCPKKNIILQFLKCMFYSLSKKLSSSP---------------------------------------YQKKAH 511 (850)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~~~~~ 511 (850)
...++.++.++++++..+..+.+....+++..... ...+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (524)
T 2xut_A 197 LGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276 (524)
T ss_dssp SSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGG
T ss_pred HhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccch
Confidence 54444433222222111111111111111100000 000111
Q ss_pred h--hhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Q psy1432 512 W--LDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAARTDSQIFGIHILPDQMQVISPMLSLILIP 589 (850)
Q Consensus 512 ~--ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~~~~~~~~~i~~~~~~vi~~l~ili~~p 589 (850)
| ++..++..+..+.++.|+++..+.+++...+++..+.+..+.+..+....+... + .+.+.+...+.+..++..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 353 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIP 353 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGG
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHH
Confidence 2 121111222223345566655666665566666666666666666654433221 1 2455666666677777788
Q ss_pred HHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccccccccccccccc
Q psy1432 590 LFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRA 669 (850)
Q Consensus 590 l~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (850)
+.+++.+|.++|++++.++.+.+.+|.++.++++++++..+...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------------------------ 397 (524)
T 2xut_A 354 FNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM------------------------------------ 397 (524)
T ss_dssp GTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------------------------------
T ss_pred HHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------------
Confidence 88877777777776555666777888888877776665432100
Q ss_pred ccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 670 LFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMF 749 (850)
Q Consensus 670 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~ 749 (850)
. .+...+.+++++.+++.++++++.
T Consensus 398 ------------~-------------------------------------------~~~~~~~~~~~~~~~l~g~~~~~~ 422 (524)
T 2xut_A 398 ------------D-------------------------------------------GGSALSIFWQILPYALLTFGEVLV 422 (524)
T ss_dssp ------------T-------------------------------------------TTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ------------c-------------------------------------------CCCCcCHHHHHHHHHHHHHHHHHH
Confidence 0 000124567788899999999999
Q ss_pred HHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccch------------hHHHHHHHHHHHHHHHHHhhh
Q psy1432 750 AIAGLHFSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQ------------AGEFFLYACLIFLDMLLFYRI 817 (850)
Q Consensus 750 ~p~~~~~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~------------~~~f~l~a~l~~l~~l~~~~~ 817 (850)
.+..++++.+.+|++.||.++|++++..++|+.+++.+.+...+... ...|++.+++.++..++++.+
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887655321 123777888888888888887
Q ss_pred eeeecccccc
Q psy1432 818 TKRYKFVKMQ 827 (850)
Q Consensus 818 ~~~~~~~~~~ 827 (850)
.+++++++.+
T Consensus 503 ~~~~~~~~~~ 512 (524)
T 2xut_A 503 ARSYQMQDHY 512 (524)
T ss_dssp ----------
T ss_pred HHHhccchhh
Confidence 7777665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=267.30 Aligned_cols=431 Identities=21% Similarity=0.311 Sum_probs=298.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCccce
Q psy1432 235 ANYPKSIYLILTIEFCERFSFCGLRTMLSLYLRDV-----LKFSEKDATVLYHIFYALCYFVPIIGAILADS-FYGRYRT 308 (850)
Q Consensus 235 ~~~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~-----LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr-~lGr~k~ 308 (850)
.+++|.++..+...+++.+++|++.++++.|+++. +|++..+.+++.+++.++..++.+++|+++|| + |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g---- 83 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G---- 83 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C----
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c----
Confidence 34677889999999999999999999999999998 99999999999999999999999999999999 7 9
Q ss_pred eeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH
Q psy1432 309 IRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG 388 (850)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG 388 (850)
||+++..+.++..++.++++++ ++...+++++++.|+|
T Consensus 84 -----------------------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~ 121 (491)
T 4aps_A 84 -----------------------------------ARPAVFWGGVLIMLGHIVLALP-------FGASALFGSIILIIIG 121 (491)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHSC-------CSTTHHHHHHHHHHHH
T ss_pred -----------------------------------chHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHH
Confidence 9999999988888887776653 4557888999999999
Q ss_pred hhchhhHHHHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHH
Q psy1432 389 TGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVM 468 (850)
Q Consensus 389 ~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~ 468 (850)
.++..++..++++|.+| +++++|+.++++++...++|+.++|.+++++.+.. +|++.|++.++..+++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 122 TGFLKPNVSTLVGTLYD--EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-------GYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHHHSS--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHcC--cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 44455888999999999999999999999999874 4999999988777777666
Q ss_pred HHHhccccccc---CC----chhhHHHHHHH------------HHHhhhhcccCCchhhhhhhhhh----------hhcc
Q psy1432 469 FVVGKPMYTIR---CP----KKNIILQFLKC------------MFYSLSKKLSSSPYQKKAHWLDY----------AEDE 519 (850)
Q Consensus 469 ~~~~~~~~~~~---~~----~~~~~~~~~~v------------~~~~~~~~~~~~~~~~~~~~ld~----------a~~~ 519 (850)
++...+++.+. ++ ..+...+..+. .......+.. .. ....... ....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 268 (491)
T 4aps_A 193 YYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LP--AYINLLTIVAIAIPVFYFAWM 268 (491)
T ss_dssp HHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cc--cchhhhhHHHHHHHHHHHHHH
Confidence 55543332211 11 11111111110 0011111100 00 0000000 0000
Q ss_pred c--CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 520 Y--SPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQAART-DSQIFGIHILPDQMQVISPMLSLILIPLFDNCIY 596 (850)
Q Consensus 520 ~--s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~a~~~-~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~ 596 (850)
+ ......++++....+.+++...+++..+.+..+.+..+.... +... ...+.+..+..+..++..++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~- 343 (491)
T 4aps_A 269 ISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWLW- 343 (491)
T ss_dssp C------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHHH-
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc----cCHHHHhccchHHHHHHHHHHHHHH-
Confidence 0 011112334444455666667777888777777766665432 2111 2334445555666666667666533
Q ss_pred hhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccccccccCcccccccccccccccccccccccccc
Q psy1432 597 PALDKIRIL-ENPLRRMVCGGCIAGFAFISAGYVELNLQENPPESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGD 675 (850)
Q Consensus 597 ~~l~r~g~~-~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (850)
+|.++| ....+++.+|.++.++++++++.......
T Consensus 344 ---~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 379 (491)
T 4aps_A 344 ---TAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG----------------------------------------- 379 (491)
T ss_dssp ---HHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-----------------------------------------
T ss_pred ---HHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Confidence 444432 24456677888888888877766532110
Q ss_pred ccccccccCCCCCCCCCCccccccCCCcccccccccccccchhhhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1432 676 RTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVFSKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLH 755 (850)
Q Consensus 676 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~ 755 (850)
.....+.+++++.+++.+++++...+..++
T Consensus 380 --------------------------------------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 409 (491)
T 4aps_A 380 --------------------------------------------------TSGKVSPLWLVGSWALVILGEMLISPVGLS 409 (491)
T ss_dssp --------------------------------------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred --------------------------------------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 001235567778889999999999999999
Q ss_pred HhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhheeeeccc
Q psy1432 756 FSFTQAPRSMKTVTIAAWQLSVALGNLIIICIEQLRGYVGQAGEFFLYACLIFLDMLLFYRITKRYKFV 824 (850)
Q Consensus 756 ~~~~~aP~~~rg~~~gl~~~~~~lG~~i~~~i~~~~~~~~~~~~f~l~a~l~~l~~l~~~~~~~~~~~~ 824 (850)
++.+.+|++.||.++|+.++...+|..+++.+.+...+.+..+.|..++++.++..++++.+.++.+++
T Consensus 410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888777777888888888888888888776665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-22 Score=215.59 Aligned_cols=181 Identities=11% Similarity=-0.009 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
.++.++..+...++.....+.+...+|.+. +++ ++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g------------ 90 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-C------------
Confidence 345666677677777777666666666655 556 9999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++.++.++..++.+++++.... .++...+++++++.|++.+...++.
T Consensus 91 ---------------------------~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 91 ---------------------------PRVFLPAGLILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHHHhhhccchH
Confidence 8999999999888888887761100 1344778889999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.++++|.+| +++|+++.++.+...++|..++|.+++++.+..+ +|+..|++.+++.++..+..+..
T Consensus 141 ~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g------~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 141 GRTMVHWWS----QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN------DWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHTTCT----TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC------CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999997 7889999999999999999999999999887631 39999999887666655444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-21 Score=212.92 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhhHHHH
Q psy1432 274 EKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSF 353 (850)
Q Consensus 274 ~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i 353 (850)
....+++.+++.++..++.+++|+++||+ | ||++++++.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-G---------------------------------------Rk~~l~~~~~ 93 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-G---------------------------------------RRDSLKIAAV 93 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-C---------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---------------------------------------CHHHHHHHHH
Confidence 45667888999999999999999999999 9 9999999999
Q ss_pred HHHHHHHHHHHhhhh-----------cccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHHH
Q psy1432 354 VYVLGNILLCLGAVP-----------TLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYYF 422 (850)
Q Consensus 354 ~~~lg~ll~al~a~p-----------~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~~ 422 (850)
++.++.+++++.... ....++...++++|++.|+|.|+..+..+++++|..| +++|+...++.+.
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p----~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP----AHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC----GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHhhhhhHHhhhh
Confidence 999999888753211 0123567889999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHHHHHHH
Q psy1432 423 IINIGGFLGMIFIPMIRKSIPCY-GGESCYALGFVVPAVLMVL 464 (850)
Q Consensus 423 ~~~iGg~iap~I~~~I~~~~g~~-g~~~~w~~~f~I~a~l~lv 464 (850)
...+|..+++.++..+....+.. ....+|+..+.+..+..++
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999888887766542210 0112466666555443333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-20 Score=198.19 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=144.9
Q ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccc
Q psy1432 237 YPKSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDA 316 (850)
Q Consensus 237 ~~r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~ 316 (850)
+++.+..+....++..+........+|. +.+++|++..+.+++.+++.++..++.+++|+++||+ |
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g------------ 89 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-S------------ 89 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-C------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c------------
Confidence 4556666666666666666655555554 6788999999999999999999999999999999999 9
Q ss_pred hhhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 317 TVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+++..+.++..++.++..+... .++.+.+++++++.|+|.+...+..
T Consensus 90 ---------------------------~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 90 ---------------------------YKAGIITGLFLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhH
Confidence 999999999988888887733211 1566889999999999999999999
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCC------------------CCccchHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIR-KSIPCYG------------------GESCYALGFVV 457 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~-~~~g~~g------------------~~~~w~~~f~I 457 (850)
.++++|.+| +++|++..++++...++|..++|.+++++. ...+..+ ...+|++.|++
T Consensus 139 ~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 139 NPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHSSC----STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 999999998 788999999999999999999999999998 4321000 00018999877
Q ss_pred HHHHHHHHHHHHH
Q psy1432 458 PAVLMVLALVMFV 470 (850)
Q Consensus 458 ~a~l~lvalv~~~ 470 (850)
.+++.++..+.++
T Consensus 215 ~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 215 IVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=188.40 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhh
Q psy1432 243 LILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHI 322 (850)
Q Consensus 243 ~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~ 322 (850)
......++..+........+|.+ .+++|.+..+.+++.+++.+...++.+++|+++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------------ 63 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-G------------------ 63 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-C------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------------
Confidence 34445556666666666666654 578999999999999999999999999999999999 9
Q ss_pred hhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHh
Q psy1432 323 FYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGE 402 (850)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae 402 (850)
||+++..+.++..++.++..+. ++...+++++++.|++.+...+...++.+|
T Consensus 64 ---------------------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~ 115 (375)
T 2gfp_A 64 ---------------------RRPVILVGMSIFMLATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRD 115 (375)
T ss_dssp ---------------------CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8899999988888888777664 355788889999999999999999999999
Q ss_pred hcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHH
Q psy1432 403 QFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALV 467 (850)
Q Consensus 403 ~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv 467 (850)
.+| +++|++..+.++...++|..++|.+++++.+.. +|+..|++.++..++..+
T Consensus 116 ~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 116 LYE----RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-------NWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHH----TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HCC----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-------cHHHHHHHHHHHHHHHHH
Confidence 997 678999999999999999999999999988763 499999887765554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=189.16 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++...++....+++|.|+++++|++..+++++.+++.++..++.+++|+++||+ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-G-------------- 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G-------------- 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-T--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 4566666666666667777778999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHH-hhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCL-GAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al-~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.+++.++...... ...+.... ..+.++++.+++.+...+...
T Consensus 72 -------------------------rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~ 122 (417)
T 2cfq_A 72 -------------------------LRKYLLWIITGMLVMFAPFFIFIFGPLLQY----NILVGSIVGGIYLGFCFNAGA 122 (417)
T ss_dssp -------------------------TCCHHHHHHHHTTSCHHHHHHHTHHHHHHT----TCCHHHHGGGSSTTHHHHTTH
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhH
Confidence 888887776654432211110 00010000 011222232332222222223
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLM 462 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~ 462 (850)
+...+..+ +..++++...+..+...++|+.++|.+++++.+. +|+..|++.++..
T Consensus 123 ~~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--------~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 123 PAVEAFIE--KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--------NNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHH--HHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--------CSHHHHTTTTTTT
T ss_pred HHHHHHHH--HhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--------chhHHHHHHHHHH
Confidence 33333332 1123455566777777789999999999998764 3888888765543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=130.60 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cccceeeeecccch
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFY-GRYRTIRVFSFDAT 317 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~l-Gr~k~l~~~~~~~~ 317 (850)
+.++..+...++....++++..++|.|+.+.+|++..+++++.++..++..++.+++|+++||+. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------------- 318 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG------------- 318 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 56777778888888999999999999999889999999999999999999999999999999963 5
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHH-HHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYV-LGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCV 396 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~-lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~ 396 (850)
||+.+.++.++.. ++.++..+ ....+...+.+...+.|++.++..+..
T Consensus 319 --------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 319 --------------------------NRGATGVFFMTLVTIATIVYWM-----NPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHTTS-----CCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHH-----hcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 6666666555333 22222211 111244666677777788888888888
Q ss_pred HHHHHhhcCCCcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 397 AALCGEQFCVPEQRFYLERFFSVYYFIINI-GGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 397 ~al~ae~fp~p~~~~~r~s~~~~~~~~~~i-Gg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
.++..|.+| ++.|+++.++++...++ |+.++|.+.+++.+..| |+..|++.+++.+++.+..+.
T Consensus 368 ~~~~~~~~~----~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 368 GLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-------WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHHH
Confidence 899999997 77899999999999999 99999999999998743 888998888777776665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=128.05 Aligned_cols=167 Identities=11% Similarity=0.090 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 240 SIYLILTIEFCERFSFCGLRTMLSLY-LRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 240 ~i~~i~~~~~~~~~~~y~~~t~L~~Y-Lt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
.++..+...++.....+.+..+++.| +++.+|++..+++.+..+..++..++.+++|+++||+ |
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~-------------- 323 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-A-------------- 323 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------------
Confidence 46666667777778888888999999 8888899999999999999999999999999999998 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||+++..+.++..++.++..+. ++.. ..+...+.+++.+...|...+
T Consensus 324 -------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~g~~~~~~~~~~~~ 370 (438)
T 3o7q_A 324 -------------------------PHKVLAAYALIAMALCLISAFA-------GGHV-GLIALTLCSAFMSIQYPTIFS 370 (438)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHC-------CHHH-HHHHHHHHHHHHTTHHHHHHH
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHc-------CCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666665554442 2222 344456778888888999999
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLAL 466 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lval 466 (850)
+..|.+| ++ ++.+.++.. ...+|+.++|.+.+++.+..| +++.+|++.+++.++.+
T Consensus 371 ~~~~~~~----~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g------~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 371 LGIKNLG----QD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG------NIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHSSCG----GG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT------SSGGGGHHHHHHHHHHH
T ss_pred HHHhhcc----cc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHH
Confidence 9999996 22 555555555 556999999999999998843 37888887665544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-10 Score=120.86 Aligned_cols=173 Identities=6% Similarity=0.052 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccch
Q psy1432 241 IYLILTIEFCERFSFCGLRTMLSLYLRDVLKF---SEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDAT 317 (850)
Q Consensus 241 i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGl---s~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~ 317 (850)
++......++....++.+..++|.|+.+.++. +....+.+..+..+...++.+++|+++||+ |
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g------------- 287 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G------------- 287 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------------
Confidence 44333333444455556667899999776653 234456677777777888899999999999 9
Q ss_pred hhhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 318 VLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
||+++..+.++..++.++..+. ++...+++...+.+++.+...+...
T Consensus 288 --------------------------~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 288 --------------------------GKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555443333221 2334455555556666666667778
Q ss_pred HHHHhhcCCCcccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSV-YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVV 471 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~-~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~ 471 (850)
++.+|.+| ++.|+++.++ ++....+|+.++|.++|++.+.. ++...|.+.+++.+++.+..+.
T Consensus 335 ~~~~~~~p----~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 335 KYITSQFE----VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHSC----HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCC----HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 7889998888 47777899999999999998863 3788888877776666655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-09 Score=112.82 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhh
Q psy1432 242 YLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYH 321 (850)
Q Consensus 242 ~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~ 321 (850)
.......++..+..+....+...++.+..+.+.........+..++..++.++++++.||+ |
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-G----------------- 340 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-G----------------- 340 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-----------------
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-c-----------------
Confidence 3333344444444444444555566678899998888888888889999999999999999 9
Q ss_pred hhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHH-hhchhhHHHHHH
Q psy1432 322 IFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIG-TGGIKPCVAALC 400 (850)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG-~g~~~~~~~al~ 400 (850)
||+.++.+.....++.+........ ..+. ...+++..+...+ ..+..|..+.+.
T Consensus 341 ----------------------rr~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
T 4gc0_A 341 ----------------------RKPLQIIGALGMAIGMFSLGTAFYT--QAPG-IVALLSMLFYVAAFAMSWGPVCWVLL 395 (491)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHHHHHHHHT--TCCH-HHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred ----------------------CcchhccchHHHHHHHHHHHHHHhc--ccch-HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877666665555443221 1122 2222333333222 223446778999
Q ss_pred HhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 401 GEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 401 ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
+|.|| .+.|+++.++.+....+++.+++.+.+.+.+...... ..++...|++.+++.+++.+..++..|
T Consensus 396 ~E~fP----t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 396 SEIFP----NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHSSC----TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 99998 7889999999999999999999888877654310000 012455677766666666655544444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.1e-09 Score=113.36 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=126.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhh
Q psy1432 244 ILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIF 323 (850)
Q Consensus 244 i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~ 323 (850)
.+...++....++...++++.|+.+.++.+....+.+.....+...++.++.|+++||+ ||++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~-------------- 352 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPS-------------- 352 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC-----------------
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCC--------------
Confidence 33344444555556667889999998898877778888888888889999999999998 843222
Q ss_pred hhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhc--ccCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy1432 324 YALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPT--LALPTIKTTLLGLIFIGIGTGGIKPCVAALCG 401 (850)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~--l~~~~~~lliialil~glG~g~~~~~~~al~a 401 (850)
+.+.+..+.++..++.++..+..... ....+...+.++.++.+++.+...+...++..
T Consensus 353 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 412 (491)
T 4aps_A 353 --------------------SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTT 412 (491)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22223355554444444443321110 01123356667778888998888899999999
Q ss_pred hhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q psy1432 402 EQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKP 474 (850)
Q Consensus 402 e~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~ 474 (850)
|.+| ++.|+.+.++++...++|+.++|.+.+++.+. ++...|.+.+++.+++.+.++...+
T Consensus 413 ~~~p----~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 413 KLAP----KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--------SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHTT----TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--------STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 77889999999999999999999998887654 3566777766666666555554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-08 Score=106.46 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|.++......++.....+.+..++|.|+++.+|++..+++.+.....++..++.++.|+++||+ |
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~-------------- 263 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-S-------------- 263 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-H--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 4566677777788888888999999999999999999999999999999999999999999998 7
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHH-HHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFV-YVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVA 397 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~-~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~ 397 (850)
+ .+..+... ...+..+..+... ..++...+++...+.+++.+...+...
T Consensus 264 -------------------------~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~ 313 (375)
T 2gfp_A 264 -------------------------T--LMWQSVICCLLAGLLMWIPDWF---GVMNVWTLLVPAALFFFGAGMLFPLAT 313 (375)
T ss_dssp -------------------------H--HHHHHHHHHHHTSSSSSHHHHH---HHHHHHHHHHHHHHHHHHHHHTSSTTH
T ss_pred -------------------------H--HHHHHHHHHHHHHHHHHHHhhh---ccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4 22222221 1111111111100 011335556677777888888889999
Q ss_pred HHHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHH
Q psy1432 398 ALCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPA 459 (850)
Q Consensus 398 al~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a 459 (850)
++..|.+| ++|+++.+..+...++|+.++|.+.+++.+.. +|...+.+.+
T Consensus 314 ~~~~~~~p-----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------~~~~~~~~~~ 363 (375)
T 2gfp_A 314 SGAMEPFP-----FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-------QGSLGLLMTL 363 (375)
T ss_dssp HHHHTHHH-----HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHhCC-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-------cccHHHHHHH
Confidence 99999984 47899999999999999999999999987652 3666666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00097 Score=73.79 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHH---HHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHH
Q psy1432 732 LIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAA---WQLSVALGNLIIICIEQLRGYVGQ-AGEFFLYACLI 807 (850)
Q Consensus 732 ~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl---~~~~~~lG~~i~~~i~~~~~~~~~-~~~f~l~a~l~ 807 (850)
.+.++...++.|++.++..|...+++.+.+|++.|+...++ ++....+|..+++.+.+......+ .+.|.+.+++.
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566677889999999999999999999999999876666 888899999999887766554333 44566666666
Q ss_pred HHHHHHHhhhee
Q psy1432 808 FLDMLLFYRITK 819 (850)
Q Consensus 808 ~l~~l~~~~~~~ 819 (850)
++..++++...+
T Consensus 189 ~~~~~~~~~~~~ 200 (524)
T 2xut_A 189 FVATVFFWLGRK 200 (524)
T ss_dssp HHHHHHHHSSSS
T ss_pred HHHHHHHHHhcc
Confidence 666655554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 850 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.92 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.34 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.15 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.9e-22 Score=211.31 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=130.8
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhccccccccccccc
Q psy1432 260 TMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILAD 339 (850)
Q Consensus 260 t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (850)
+.+..++. ++|+|..+.+++.+++.++..++.+++|+++||+ |
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g----------------------------------- 87 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-N----------------------------------- 87 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-C-----------------------------------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----------------------------------
Confidence 34445665 5899999999999999999999999999999999 9
Q ss_pred ccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHH
Q psy1432 340 SFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSV 419 (850)
Q Consensus 340 ~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~ 419 (850)
||+++.++.++..++.+++++..... .+...+++.+++.|++.++..++..++++|.+| +++|++++++
T Consensus 88 ----~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~ 156 (447)
T d1pw4a_ 88 ----PRVFLPAGLILAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSV 156 (447)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT----TTHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----hhcccccccc
Confidence 99999999888888877776532111 233678888999999999999999999999998 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 420 YYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 420 ~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.+...++|+.++|.+++.+....+ +|+..|++.+.+.++..+..+..
T Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFLLGMAWFN------DWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTC------CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhHhhhhh------cccccchhhhhhHHHHHHHHHHh
Confidence 999999999999999988877642 59999988877666555544444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=8.1e-21 Score=193.67 Aligned_cols=400 Identities=10% Similarity=0.042 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
|++|......++..++.....+++|.|+++++|+|..+.+++.+++.+...++.+++|+++||+ |
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-g-------------- 71 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-G-------------- 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-T--------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------------
Confidence 6788888888888888888888999999999999999999999999999999999999999999 9
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
||++++++.++..++.++..+..... ......++...+.+.+.+........
T Consensus 72 -------------------------rr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (417)
T d1pv7a_ 72 -------------------------LRKYLLWIITGMLVMFAPFFIFIFGP---LLQYNILVGSIVGGIYLGFCFNAGAP 123 (417)
T ss_dssp -------------------------TCTHHHHHHHHHHHTHHHHHHHTHHH---HHHTTCHHHHHHTTTTGGGGGTTHHH
T ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHhhhcccccccchhh
Confidence 88888888776666666555432110 00011122222333333333333333
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHhcccccc
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIGGFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVGKPMYTI 478 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iGg~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~~~~~~~ 478 (850)
...+..+ +..+++....+........+..++|.+++++.+. +|+..+.+......+..+......+..+.
T Consensus 124 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 124 AVEAFIE--KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--------NNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHHHH--HHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred ccccccc--chhhhhHHHHHHHhhhhccccccccccccccccc--------cccccccchhhHHHHHHHHHHHHhccccc
Confidence 3333322 2233445555666667788888999999988775 25555555554444444433333322221
Q ss_pred cCCchhhHHHHHHHHHHhhhhcccCCchhhhhhhhhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1432 479 RCPKKNIILQFLKCMFYSLSKKLSSSPYQKKAHWLDYAEDEYSPRLISDMKTVLAILFVFIPLPLFWSLFDQLGSSWTFQ 558 (850)
Q Consensus 479 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ld~a~~~~s~~~v~~~k~ll~~l~v~~~~ilf~~~~~q~~s~l~~~ 558 (850)
.+...+. .+..... ....+. .+.... +...............+.. ........
T Consensus 194 ~~~~~~~-------------~~~~~~~----~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 246 (417)
T d1pv7a_ 194 SATVANA-------------VGANHSA----FSLKLA------LELFRQ-PKLWFLSLYVIGVSCTYDV---FDQQFANF 246 (417)
T ss_dssp SSCSSHH-------------HHSCCCC----CCHHHH------HHHTTS-SHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred chhhhhh-------------hhhhccc----cccccc------cccccc-ccccchhhhhHHHHHHHHh---hhcccccc
Confidence 1111110 0000000 000000 000001 1111111111111111111 11111111
Q ss_pred HHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy1432 559 AARTDSQIFGIHILPDQMQVISPMLSLILIPLFDNCIYPALDKIRILENPLRRMVCGGCIAGFAFISAGYVELNLQENPP 638 (850)
Q Consensus 559 a~~~~~~~~~~~i~~~~~~vi~~l~ili~~pl~~~~i~~~l~r~g~~~~~~~~m~iG~~i~~ls~l~~a~~~~~~~~~~~ 638 (850)
........+..............+...+...+.++ ..+|. ++.+.+.++.++.+++.+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~----~~~~~~~~~~~~~~~~~~~~~~~--------- 309 (417)
T d1pv7a_ 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL----IINRI----GGKNALLLAGTIMSVRIIGSSFA--------- 309 (417)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHH----CHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ccccccccccchhhhcccccccccccccchhhhhh----hhccc----ccccchhhhHHHHHHhhhccccc---------
Confidence 11111000000000111112222222222222221 12333 34555667777776666555421
Q ss_pred CCccccccccCccccccccccccccccccccccccccccccccccCCCCCCCCCCccccccCCCcccccccccccccchh
Q psy1432 639 ESTTKLECYNGFMKNATEWSKNSLSFMGNRALFLTGDRTNRKNIENGNLGGTSGNMTEVKNGNSSSITNNKNITSKFQVF 718 (850)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (850)
T Consensus 310 -------------------------------------------------------------------------------- 309 (417)
T d1pv7a_ 310 -------------------------------------------------------------------------------- 309 (417)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-ch
Q psy1432 719 SKLLILSPGRTVKLIYMVPQYVLMSIGEVMFAIAGLHFSFTQAPRSMKTVTIAAW-QLSVALGNLIIICIEQLRGYV-GQ 796 (850)
Q Consensus 719 ~~~~~~~~~~~~s~~~li~~yvl~gige~l~~p~~~~~~~~~aP~~~rg~~~gl~-~~~~~lG~~i~~~i~~~~~~~-~~ 796 (850)
.+.+.++...++.+++.+...+...++..+.+|++.||.++|+. ++...+|..+++.+.+...+. +.
T Consensus 310 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 310 -----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred -----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 13355666778889999999999999999999999999999974 567889999999888877654 44
Q ss_pred hHHHHHHHHHHHHHHHHHhhheeeeccccc
Q psy1432 797 AGEFFLYACLIFLDMLLFYRITKRYKFVKM 826 (850)
Q Consensus 797 ~~~f~l~a~l~~l~~l~~~~~~~~~~~~~~ 826 (850)
...|++.+++.++..++.++..|+.+....
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 567888888888888888777766554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.6e-11 Score=128.37 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchh
Q psy1432 239 KSIYLILTIEFCERFSFCGLRTMLSLYLRDVLKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATV 318 (850)
Q Consensus 239 r~i~~i~~~~~~~~~~~y~~~t~L~~YLt~~LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~ 318 (850)
+.++......++.....+++..+++.|+.+.+|++..+.+....+..+...++.+++|+++||+ +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-------------- 313 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-F-------------- 313 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S--------------
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-c--------------
Confidence 5677777788888899999999999999999999999999999999999999999999999998 7
Q ss_pred hhhhhhhhcccccccccccccccccceehhhHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHH
Q psy1432 319 LYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAA 398 (850)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vili~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~a 398 (850)
|++......+...+..+... ........+....++..++.+++.++..+...+
T Consensus 314 -------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 366 (447)
T d1pw4a_ 314 -------------------------RGNRGATGVFFMTLVTIATI--VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 366 (447)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHH--HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred -------------------------ccccccccchhHHHHHHHHH--HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222221111111111 122222334466666777778887777888899
Q ss_pred HHHhhcCCCcccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q psy1432 399 LCGEQFCVPEQRFYLERFFSVYYFIINIG-GFLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFV 470 (850)
Q Consensus 399 l~ae~fp~p~~~~~r~s~~~~~~~~~~iG-g~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~ 470 (850)
+..|.+| ++.|+++.++.+...+++ ..++|.+.+++.+..| |+..|++.+++.+++.+.+.
T Consensus 367 ~~~~~~p----~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-------~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 367 HALELAP----KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-------WDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------hHHHHHHHHHHHHHHHHHHH
Confidence 9999998 788999999999888775 4568999999998843 88888877666655554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.7e-10 Score=116.51 Aligned_cols=145 Identities=8% Similarity=0.025 Sum_probs=114.2
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccceeeeecccchhhhhhhhhhcccccccccccccccccceehhh
Q psy1432 270 LKFSEKDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIRVFSFDATVLYHIFYALCYFVPIIGAILADSFYGRYRTIR 349 (850)
Q Consensus 270 LGls~~~a~~i~~i~~i~~~~~~~lgG~LADr~lGr~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rr~vil 349 (850)
.+.+....+.......++..++..+.|+++||+ | |++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~---------------------------------------~~~~~~ 293 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-G---------------------------------------GKNALL 293 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-C---------------------------------------HHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-c---------------------------------------cccchh
Confidence 345566677777888888888999999999999 8 888888
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCcccchhhhHHHHHH-HHHHHHH
Q psy1432 350 VFSFVYVLGNILLCLGAVPTLALPTIKTTLLGLIFIGIGTGGIKPCVAALCGEQFCVPEQRFYLERFFSVYY-FIINIGG 428 (850)
Q Consensus 350 i~~i~~~lg~ll~al~a~p~l~~~~~~lliialil~glG~g~~~~~~~al~ae~fp~p~~~~~r~s~~~~~~-~~~~iGg 428 (850)
++.++..++.++..+. ++...+++..++.+++.+...+...++..|.+| ++.|+++.+..+ ....+|+
T Consensus 294 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~ 362 (417)
T d1pv7a_ 294 LAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFE----VRFSATIYLVCFCFFKQLAM 362 (417)
T ss_dssp HHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----GGGHHHHHHHHHTTTHHHHH
T ss_pred hhHHHHHHhhhccccc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCC----HhHHHHHHHHHHHHHHHHHH
Confidence 8777666655555443 455777777888889999999999999999998 788999999754 5667999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHHHHHHh
Q psy1432 429 FLGMIFIPMIRKSIPCYGGESCYALGFVVPAVLMVLALVMFVVG 472 (850)
Q Consensus 429 ~iap~I~~~I~~~~g~~g~~~~w~~~f~I~a~l~lvalv~~~~~ 472 (850)
.++|.++|++.+..| |+..|++.+++.+++.+...+.
T Consensus 363 ~i~~~~~G~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 363 IFMSVLAGNMYESIG-------FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999854 8888888777666655554443
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